RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14307
(1235 letters)
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 92.3 bits (229), Expect = 1e-18
Identities = 99/470 (21%), Positives = 134/470 (28%), Gaps = 76/470 (16%)
Query: 282 KPGEPEVQT----PIVP-EPTKQELPEVPETTKP-QLPEVPEPTKSQLPEVPEPT-KPQL 334
+P EP V + P P + + P P P P + P+ P P+ P
Sbjct: 2576 RPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635
Query: 335 PEVLEPTTLQLPEDPEPTKPQLP-------EDPEPTKPQLPEVP--EPTKPQLPEVLEP- 384
E +P P P + P P + +
Sbjct: 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSL 2695
Query: 385 TKLQLPEDPEPTKPQLPED-PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQ 443
T L P P PT PE P P P P + P P P VP T
Sbjct: 2696 TSLADPPPPPPT----PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751
Query: 444 LPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELL----L 499
P P P P P L P L
Sbjct: 2752 GGPARPARPPTTAGPPAPA-------------PPAAPAAGPPRRLTRPAVASLSESRESL 2798
Query: 500 PPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLL---------- 549
P +P L P LPP + P LPP + PP P
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858
Query: 550 --------PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP 601
P + K P +P + L P E P +PE
Sbjct: 2859 GGDVRRRPPSRSPAAKPAAPARPPVRRLARP--------AVSRSTESFALPPDQPE---- 2906
Query: 602 PKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELL-----LPPKPES 656
P+P+ PP+P+P+ PP+P+P PP+P+P L P +P P+P
Sbjct: 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP--LAPTTDPAGAGEPSGAVPQPWL 2964
Query: 657 ELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLD 706
L+P + P+P P P P L + +L L
Sbjct: 2965 GALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALH 3014
Score = 77.3 bits (190), Expect = 5e-14
Identities = 105/441 (23%), Positives = 142/441 (32%), Gaps = 76/441 (17%)
Query: 327 PEPTKPQLPEVLEPTTLQLPEDPEPTKPQL--------------PEDPEPTKPQLPEVPE 372
P+P P P L P L EP P++ DP P P
Sbjct: 2504 PDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAA 2563
Query: 373 PTK--------PQLPEVLEPTKLQLPE-DPEPTKPQLPEDPETTKP-QLPEVPEPTKLQL 422
P + P+ E ++ + P+ P+ +P+ P D P P P
Sbjct: 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
Query: 423 PEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPK 482
P+ P P+ P E P VP P +P+ V ++ L + PP+
Sbjct: 2624 PDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681
Query: 483 -PEPEILLPP-KPEPELLLPPKPEPE-LLLPPKLEPKLLLPP------KSEPELLLPPKP 533
P P L PP P P P L LPP ++ P L P P
Sbjct: 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741
Query: 534 EPELLLPPKP--------KPELLLPPKPEPEKLLLPPKPKPKLLLPPK----PESELLLP 581
P P P PP P P P P+ L P ES LP
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPA--APAAGPPRRLTRPAVASLSESRESLP 2799
Query: 582 PKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKP----EPELLL------- 630
+P P +PP P LPP + PP P P L L
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859
Query: 631 ------------PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPE----PEILLPPKP 674
KP P + + ES L P +PE P+ PP+P
Sbjct: 2860 GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
Query: 675 EPELLLPPKPEPELLLPPKPE 695
+P+ PP+P+P PP+P+
Sbjct: 2920 QPQPPPPPQPQPPPPPPPRPQ 2940
Score = 77.3 bits (190), Expect = 5e-14
Identities = 101/516 (19%), Positives = 135/516 (26%), Gaps = 59/516 (11%)
Query: 251 VKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTP-IVP-EPTKQELPEVPETT 308
V RR A+ R P+ G D P P P I+P EP + + T
Sbjct: 2479 VYRRPAEARFPFAAGAAPDPGGGGP--PDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTW 2536
Query: 309 KPQLPEV-PEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEP------TKPQLPEDPE 361
L E+ + P +P P P+ P P EP +P P P+
Sbjct: 2537 IRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP--PQ 2594
Query: 362 PTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQ 421
+P+ P P P P + P E
Sbjct: 2595 SARPRAPVDDRGDPRGPAP---------PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645
Query: 422 LPEVPEPTK-PELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLP 480
+P P P V + + + + P P
Sbjct: 2646 VPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP 2705
Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLE--------------PKLLLPPKSEPE 526
P PEP P LPP P P L P P P
Sbjct: 2706 PTPEPA---PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT 2762
Query: 527 LLLPPKPEPELLLPPKPKPELLLPP----KPEPEKLLLPPKPKPKLLLPPKPESELLLPP 582
PP P P P L P E L P P P + L
Sbjct: 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
Query: 583 KPEPELIIPPKPEPEILIPPKPEPELLLPP-----------KPEPEILLPPKPEPELLLP 631
P L P +P PP P LP + P KP P
Sbjct: 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPP 2882
Query: 632 PKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLP 691
+ + E L P +PE P P+ P+P+P P+P P
Sbjct: 2883 VRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ----PQPQPPPPPQPQPPPPPPPR 2938
Query: 692 PKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPV 727
P+P TT + + L+ + V
Sbjct: 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974
Score = 68.0 bits (166), Expect = 3e-11
Identities = 82/385 (21%), Positives = 109/385 (28%), Gaps = 35/385 (9%)
Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
P + E P DP P P+P P P L P L EP P+
Sbjct: 2478 PVYRRPAEARFPFAAGAAPDPGGGGP-----PDPDAPPAPSRLAPAILPDEPVGEPVHPR 2532
Query: 400 L-----------PEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP 448
+ +D P LP P P P E ++ + P+ P
Sbjct: 2533 MLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP 2592
Query: 449 -EPTKPQ--ILDKKEPVLLDKKEPVLLDKKEPVLPP-KPEPEILLPPKPEPELLLPPKPE 504
+ +P+ + D+ +P P+ D P PP P P P P + PP+
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
Query: 505 PELLLPPKLEPKLLLPPKSEPELLLPP--KPEPELLLPP-KPKPELLLPPKPEPEKLLLP 561
+ P ++ P +P P L PP P P P
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP 2712
Query: 562 PKPKPKLLLPPKPESELLLPPKPEPELIIPPKPE----PEILIPPKPEPELLLPPKPEPE 617
LPP P + P P P P P P PP P P
Sbjct: 2713 HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP 2772
Query: 618 ILLPPKPEPELLLP---PKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKP 674
P L P E LP +P LP P LPP
Sbjct: 2773 AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832
Query: 675 EPELLLPPKPEPELLLPPKPETITT 699
+ PP P P P ++
Sbjct: 2833 SAQPTAPPPPP-----GPPPPSLPL 2852
Score = 34.1 bits (78), Expect = 0.59
Identities = 26/122 (21%), Positives = 35/122 (28%), Gaps = 13/122 (10%)
Query: 281 KKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
K+ TP P + P P P PT P P P
Sbjct: 384 KRRSARHAATPFARGPGGDDQTR-PAAPVPASVPTPAPTPVPASAPPPPATP-------- 434
Query: 341 TTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQL 400
L E P P + +P P P+ + L+ + + P PEP L
Sbjct: 435 --LPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRP--PEPPGADL 490
Query: 401 PE 402
E
Sbjct: 491 AE 492
Score = 31.4 bits (71), Expect = 4.0
Identities = 21/102 (20%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
P P + P P VP P +P P P P P+ E
Sbjct: 394 PFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPP----PATPLPS----AEPGSDDG 445
Query: 409 PQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEP 450
P P +P P+ + + + + P PEP
Sbjct: 446 PAPPPERQPPAPATEPAPDDPDDATRKALDALRERRP--PEP 485
>gnl|CDD|185644 PTZ00465, PTZ00465, rhoptry-associated protein 1 (RAP-1);
Provisional.
Length = 565
Score = 65.9 bits (160), Expect = 8e-11
Identities = 65/170 (38%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 293 VPEPTKQELPEVPETTKPQL-PEVPEPTKSQLPEVPEPTKPQLPE-VLEPTTLQLPEDPE 350
V +PTK+ + + E TK L V EPTK + + E TK L E V EPT E P+
Sbjct: 314 VTQPTKKFIEDTNEVTKNYLKANVAEPTKKFMQDTHEKTKGYLKENVAEPTKTFFKEAPQ 373
Query: 351 PTKPQLPED-PEPTKPQLPEVPEPTKPQLPE-VLEPTKLQLPEDPEPTKPQLPED-PETT 407
TK E+ +PTK E P+ TK L E + +PTK E P+ TK L E+ + T
Sbjct: 374 VTKHFFDENIGQPTKEFFREAPQATKHFLDENIGQPTKEFFREAPQVTKHFLDENIAQPT 433
Query: 408 KPQLPEVPEPTKLQLPE-VPEPTKPELPEVPELTKTQLPE-VPEPTKPQI 455
K +VP+ TK + E + +PTK L EVP T L E + +P K I
Sbjct: 434 KEFFRDVPQVTKKVITENIAQPTKEFLKEVPHTTMKVLNENIAQPAKEII 483
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 58.5 bits (141), Expect = 2e-08
Identities = 78/332 (23%), Positives = 106/332 (31%), Gaps = 27/332 (8%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P EP QL P Q+ + PT QL P+ Q P P P Q PE P
Sbjct: 553 PASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSA-PSYAQTP-WPVPHPSQTPEPP- 609
Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLD 465
TT+ +PE P + +P P P +P + P +P + +I K
Sbjct: 610 TTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWT-- 667
Query: 466 KKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEP 525
+ +P +P P +LP + P + PP P + PP + P
Sbjct: 668 ---------QIGHIPYQPSPT-------GANTMLPIQWAPGTMQPPPRAPTPMRPPAAPP 711
Query: 526 ELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPE 585
P PP P PP P + PP P PP PP
Sbjct: 712 GRAQRPAAATGRARPPAAAPGRARPPAAAPGRAR-PPAAAPGRARPPAAAPGRARPPAAA 770
Query: 586 PELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPE 645
P P P+P PP P+ P P+P P L+P + +
Sbjct: 771 PG---APTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSM--QLMPRAAPGQQGPTKQIL 825
Query: 646 PELLLPPKPESELLLPLKPEPEILLPPKPEPE 677
+LL L E P P
Sbjct: 826 RQLLTGGVKRGRPSLKKPAALERQAAAGPTPS 857
Score = 50.8 bits (121), Expect = 5e-06
Identities = 50/216 (23%), Positives = 65/216 (30%), Gaps = 7/216 (3%)
Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPP-KPEPELLL 539
P P P P+P P+ P L P + P + +P P P
Sbjct: 596 PWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQ-- 653
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPK-PKLLLPPKPESELLLPPKPEPELIIPPKPEPEI 598
PP+ + P + + P P +LP + + PP P + PP P
Sbjct: 654 PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR 713
Query: 599 LIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESEL 658
P PP P PP P PP P PP P PP
Sbjct: 714 AQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGA 773
Query: 659 LLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKP 694
P P PP P+ P P+P P
Sbjct: 774 PTPQPPPQ---APPAPQQRPRGAPTPQPPPQAGPTS 806
>gnl|CDD|216001 pfam00577, Usher, Type VII secretion system (T7SS), usher protein.
The chaperone-usher (CU) pathway or Type VII secretion
system (T7SS) in Gram-negative (diderm) bacteria is
responsible for the secretion and assembly of prepilins
for fimbriae biogenesis, the prototypical Type 1 pili.
Following the prepilins export to the periplasm by the
Sec translocon, the biogenesis of fimbriae requires a
two-component assembly and transport system which is
composed of a periplasmic chaperone and an outer membrane
protein, which has been termed a molecular 'usher'. The
usher protein is rather large (from 86 to 100 Kd) and
seems to be mainly composed of membrane-spanning
beta-sheets, a structure reminiscent of porins. Although
the degree of sequence similarity of these proteins is
not very high they share a number of characteristics. One
of these is the presence of two pairs of cysteines, the
first one located in the N-terminal part and the second
at the C-terminal extremity that are probably involved in
disulphide bonds. The best conserved region is located in
the central part of these proteins.
Length = 552
Score = 54.2 bits (131), Expect = 3e-07
Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 58/277 (20%)
Query: 968 NSELVYKDKY----TGVG---GYFGAVPEIGQ-------NYYFHQNQSQNYYYHQNLSQN 1013
L D Y GVG G GA+ N H QS Y ++L +
Sbjct: 201 YGGLQLADDYQAAALGVGLNLGDLGALSVDVTQSRSKLDNQSSHNGQSYRLSYSKSLDE- 259
Query: 1014 YYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQ 1073
N +L Y R S+ YY + +++ N N + + + Y LSQ
Sbjct: 260 --TGTNFTLAGY--RYSSRGYY-----TLSDFLDTRNSGYNLRYRKKNKERY--QLTLSQ 308
Query: 1074 NYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNY---YYHQNQSQNYY--YHQNQSQKYYYH 1128
+ +L L Q Y+ N S + Y + + +++
Sbjct: 309 SLGGWGSLYLSGS-----RQTYWGDDNTSTSLQVGYNFNIGRVSVSLNWSYSRNAGSNNR 363
Query: 1129 Q-----NLS-------QNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY 1176
N+S Y + S++ + + + Y ++
Sbjct: 364 DDSLSLNISIPLGRLDGRAYSTYSYSRSNNGGTTSNTGVSGSLFEDDRLSY--GVNAG-R 420
Query: 1177 YHQNRSQN---YYYHQ----NLSQNYYYHQNQSQKNY 1206
+ + ++ LS +Y Y ++ Q
Sbjct: 421 SSDGKESSGSLNLSYRGDYGELSGSYSYSRDYRQLGA 457
Score = 44.5 bits (106), Expect = 3e-04
Identities = 28/146 (19%), Positives = 42/146 (28%), Gaps = 38/146 (26%)
Query: 1111 QSQNYYYHQNQSQKYYYHQNLSQ--------NYYYHQNLSQNYYC------HQNQSQNYY 1156
+ N H QS + Y ++L + Y Y S+ YY +N N
Sbjct: 237 KLDNQSSHNGQSYRLSYSKSLDETGTNFTLAGYRYS---SRGYYTLSDFLDTRNSGYNLR 293
Query: 1157 YHQNQSQKYYYHQNLSQN---------CYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYY 1207
Y + K Y LSQ+ Q Y+ N S + N +
Sbjct: 294 YRKKN--KERYQLTLSQSLGGWGSLYLSGSRQT----YWGDDNTSTSLQVGYNFNIGRVS 347
Query: 1208 YHLNLSQNYYYHQNLSQNYYYHQNSF 1233
LN S + +S
Sbjct: 348 VSLNWSYSRN------AGSNNRDDSL 367
>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional.
Length = 955
Score = 53.6 bits (128), Expect = 6e-07
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 364 KPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLP 423
+P P +P+P P +P+ + P P DP+P P +P DP P P+ +P + P
Sbjct: 559 EPDEPIIPDPVDPVIPDPVIPD----PVDPDPVDPVIP-DPVIPDPVDPDPVDPEPVD-P 612
Query: 424 EVPEPTKPEL--PEVPELTKTQL-PEV 447
+P+PT P++ + P +T+ Q PEV
Sbjct: 613 VIPDPTIPDIGQSDTPPITEHQFRPEV 639
Score = 49.0 bits (116), Expect = 2e-05
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 28/108 (25%)
Query: 287 EVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLP 346
E PI+P+P +P+ P +P+P P+P P +P+ P
Sbjct: 559 EPDEPIIPDPVDPVIPD---------PVIPDPVD------PDPVDPVIPD---------P 594
Query: 347 EDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPE 394
P+P P P DPEP P +P+PT P + + P + PE
Sbjct: 595 VIPDPVDPD-PVDPEPVDPV---IPDPTIPDIGQSDTPPITEHQFRPE 638
Score = 44.4 bits (104), Expect = 4e-04
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 33/98 (33%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT 342
P +P + P++P+P P+ P +P+ P +P+P P
Sbjct: 568 PVDPVIPDPVIPDPVD------PDPVDPVIPD---------PVIPDPVDPD--------- 603
Query: 343 LQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE 380
P DPEP P +P+ P +P++ + P + E
Sbjct: 604 ---PVDPEPVDPVIPD------PTIPDIGQSDTPPITE 632
Score = 33.2 bits (75), Expect = 0.99
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 464 LDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKS 523
++ EP++ D +PV+ P+P I P P+P + P P+P ++P ++P + P
Sbjct: 558 IEPDEPIIPDPVDPVI---PDPVIPDPVDPDP--VDPVIPDP--VIPDPVDPDPVDPEPV 610
Query: 524 EPELLLPPKPE 534
+P + P P+
Sbjct: 611 DPVIPDPTIPD 621
Score = 33.2 bits (75), Expect = 0.99
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 595 EPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKP 654
EP+ I P P + P P+P I P P+P + P P+P I P P+P + P+P
Sbjct: 559 EPDEPIIPDP----VDPVIPDPVIPDPVDPDP--VDPVIPDPVIPDPVDPDP---VDPEP 609
Query: 655 ESELLLPLKPEPEI 668
P+ P+P I
Sbjct: 610 VD----PVIPDPTI 619
Score = 31.7 bits (71), Expect = 3.2
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 554 EPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPK 613
EP++ ++P P + P P+ P P+P + P P+P I P P+P
Sbjct: 559 EPDEPIIPDPVDPVIPDPVIPD-----PVDPDP--VDPVIPDPVIPDPVDPDP------- 604
Query: 614 PEPEILLPPKPEPEL 628
+PE + P P+P +
Sbjct: 605 VDPEPVDPVIPDPTI 619
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 51.2 bits (122), Expect = 3e-06
Identities = 71/348 (20%), Positives = 101/348 (29%), Gaps = 8/348 (2%)
Query: 354 PQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQ-LP 412
P + P P P+ +P P Q P+ P + PQ LP
Sbjct: 179 PSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLP 238
Query: 413 EVPEPTKLQLPEVPEPTKPELPEVPELTK--TQLPEVPEPTKPQILDKKEPVLLDKKEPV 470
P + Q P P + P +P + + + P +
Sbjct: 239 SPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFG 298
Query: 471 LLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLP 530
L + P LP + + P L P +P E LPP + PP + P LP
Sbjct: 299 LAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLP 358
Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
+ P P +P P L P P P L L P+ +P +
Sbjct: 359 NQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSV 418
Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
P +P P + P+ P P P + P I PP
Sbjct: 419 PAQP-PVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPA 477
Query: 651 PPKPESELLLP----LKPEPEILLPPKPEPELLLPPKPEPELLLPPKP 694
P S P L P P P + + +P E P P
Sbjct: 478 APPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESP 525
Score = 46.2 bits (109), Expect = 1e-04
Identities = 64/237 (27%), Positives = 88/237 (37%), Gaps = 16/237 (6%)
Query: 477 PVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPE 536
+PP+ P P + L P +L P +P+ P+P
Sbjct: 201 QAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSP---HPPLQPQTASQQSPQPP 257
Query: 537 LLLPPKPKPELLLPPKPEPEKLLL-PPKPKPKLLLPPKPES--ELLLPPKPEPELIIP-- 591
P+ P P P L P + PP+P + +PP P P P
Sbjct: 258 APSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHS 317
Query: 592 -PKPEPEILIPPKPEPELLLPPKPE-PEILLPPK-PEPELLLPPKPEPEILLPPKPEPEL 648
P L P +P E LPP P P I PP P P+L P L P P P++
Sbjct: 318 HTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQM 377
Query: 649 L--LPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTL 703
LPP P L PL P P P L L P+ +P +P +P +T +++L
Sbjct: 378 PSNLPPPPA---LKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSL 431
Score = 42.0 bits (98), Expect = 0.002
Identities = 50/203 (24%), Positives = 69/203 (33%), Gaps = 17/203 (8%)
Query: 496 ELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLP----- 550
+ LL P+ P + +PP PP + +PP+ P P +
Sbjct: 170 QQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISA 229
Query: 551 PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLL 610
P P++L P P L P + PP P P PP P
Sbjct: 230 PSLHPQRLPSPHPP----LQPQTASQQSPQPPAPSSRHPQSSHHGP---GPPMPHALQQG 282
Query: 611 PPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILL 670
P + PP+P L P + LP + +P PP L P +P E L
Sbjct: 283 PVFLQHPSSNPPQPFG---LAQSQVPPLPLPSQAQPHSHTPPSQS--ALQPQQPPREQPL 337
Query: 671 PPKPEPELLLPPKPEPELLLPPK 693
PP P + PP P LP +
Sbjct: 338 PPAPSMPHIKPPPTTPIPQLPNQ 360
Score = 39.3 bits (91), Expect = 0.014
Identities = 42/181 (23%), Positives = 56/181 (30%), Gaps = 11/181 (6%)
Query: 516 KLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPK--PEPEKLLLPPKPKPKLLLPPK 573
+ LL P+ P + +PP PP +PP+ P + P+ L L
Sbjct: 170 QQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISA 229
Query: 574 PESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK 633
P P P P L + PP P P PP P P
Sbjct: 230 PSLHPQRLPSPHPPLQPQTASQQSPQ-PPAPSSRHPQSSHHGP---GPPMPHALQQGPVF 285
Query: 634 PEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPK 693
+ PP+P LPL + + P L P +P E LPP
Sbjct: 286 LQHPSSNPPQP-----FGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPA 340
Query: 694 P 694
P
Sbjct: 341 P 341
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 51.2 bits (122), Expect = 4e-06
Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 12/224 (5%)
Query: 346 PEDP-EPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE-VLEPTKLQLPEDPEPTKPQLPED 403
P +P T P D P +P + P P PQ E V+ P P+ + +P + +
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVP-GPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394
Query: 404 PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVL 463
+P P+ P +P PE P P +P +E
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454
Query: 464 LDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPK-----LEPKLL 518
+ ++ P EP P E + ++ P+P E P + E
Sbjct: 455 TFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEE 514
Query: 519 LPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPP 562
+ +L +P PE P +PE + P +PP
Sbjct: 515 KRAREREQLAAWYQPIPE----PVKEPEPIKSSLKAPSVAAVPP 554
Score = 49.7 bits (118), Expect = 1e-05
Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 4/160 (2%)
Query: 289 QTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPED 348
Q P+ P+ +P PE Q P P +P + Q
Sbjct: 398 QQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFA 457
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
P+ T +P + Q V+EP + E+ +P +P L E +
Sbjct: 458 PQSTYQTEQTYQQPAAQEPLYQQPQPVEQ-QPVVEPEPVV--EETKPARPPLYYFEEVEE 514
Query: 409 PQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP 448
+ E + P +PEP K P L + VP
Sbjct: 515 KRAREREQLAAWYQP-IPEPVKEPEPIKSSLKAPSVAAVP 553
Score = 49.7 bits (118), Expect = 1e-05
Identities = 51/227 (22%), Positives = 69/227 (30%), Gaps = 29/227 (12%)
Query: 283 PGEPEVQTPIVPEP-TKQELPEVPETTKPQLPEVPEPTKSQLPE----VPEPTKP----- 332
P EP QTP V P V P P+ EP + PE + +P
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPG-PQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394
Query: 333 ---QLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQL 389
Q P + + +P PE Q P P +P + + Q
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454
Query: 390 PEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLP---- 445
P+ T E T Q P EP Q V + E V E TK P
Sbjct: 455 TFAPQST-----YQTEQTYQQ-PAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYY 508
Query: 446 --EVPEP---TKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEI 487
EV E + Q+ +P+ KEP + P +
Sbjct: 509 FEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPV 555
Score = 43.9 bits (103), Expect = 6e-04
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 13/167 (7%)
Query: 267 DPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEV 326
D E + L +D P EP + P Q+ + + V + Q P+
Sbjct: 726 DFEFSPMKALLDD--GPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ 783
Query: 327 PEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEP--TKPQLPEVLEP 384
P +PQ + +P Q P+ +P +P P+ P+ +PQ P P+P +PQ P +P
Sbjct: 784 PVAPQPQYQQPQQPVAPQ-PQYQQPQQPVAPQ-PQYQQPQQPVAPQPQYQQPQQPVAPQP 841
Query: 385 TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKP 431
L P L + ++ P P P+ L P +P
Sbjct: 842 QDTLL-------HPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEP 881
Score = 42.8 bits (100), Expect = 0.001
Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 16/182 (8%)
Query: 514 EPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPP-KPEPEKLLLPPKPKPKLLLPP 572
EP PP + + P +P + P P P+ P P PE + + P
Sbjct: 338 EPVTQTPPVASVD---VPPAQPTVAWQPVPGPQTGEPVIAPAPEGY----PQQSQYAQPA 390
Query: 573 KPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 632
+E P +P P P P + P +P + P PE +
Sbjct: 391 VQYNE----PLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNA 446
Query: 633 KPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPP 692
E P+ + E P EP P E + ++ P+P E P
Sbjct: 447 WQAEEQQSTFAPQSTY----QTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA 502
Query: 693 KP 694
+P
Sbjct: 503 RP 504
Score = 39.3 bits (91), Expect = 0.015
Identities = 25/162 (15%), Positives = 44/162 (27%), Gaps = 4/162 (2%)
Query: 534 EPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPK 593
EP PP ++ P +P +P + ++ P PE P + +
Sbjct: 338 EPVTQTPPVASVDVP-PAQPTVAWQPVPGPQTGEPVIAPAPEG---YPQQSQYAQPAVQY 393
Query: 594 PEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK 653
EP +P + + + P P P +
Sbjct: 394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453
Query: 654 PESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
+ E P EP P E + ++ P+P
Sbjct: 454 STFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV 495
Score = 37.4 bits (86), Expect = 0.068
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 329 PTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQL----PEVPEPTKPQLPEVLEP 384
P +P ++EP Q P+ P + Q + +P PQ P+ P +PQ + +P
Sbjct: 740 PHEPLFTPIVEPV--QQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 797
Query: 385 TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
Q P+ +P +P P+ P+ +PQ P P+P + Q P+ P +P+
Sbjct: 798 VAPQ-PQYQQPQQPVAPQ-PQYQQPQQPVAPQP-QYQQPQQPVAPQPQ 842
Score = 34.7 bits (79), Expect = 0.39
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 506 ELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPK 565
E L P +EP P+ +P P +P+ + P+P+ ++ P P+
Sbjct: 742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 801
Query: 566 PKLLLPPKPESELLLPPKPEPELIIPPK-PEPEILIPPKPEPELLLP---------PKPE 615
P+ P +P + +P+ + P+ +P+ + P+P+ LL P P +
Sbjct: 802 PQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHK 861
Query: 616 PEILLPPKPEPELLLPPKPEPE 637
P P P +LL PP E E
Sbjct: 862 PTT---PLPSLDLLTPPPSEVE 880
Score = 34.7 bits (79), Expect = 0.43
Identities = 33/196 (16%), Positives = 55/196 (28%), Gaps = 28/196 (14%)
Query: 390 PEDP-EPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP 448
P +P T P D +P + P P P+ EP PE Q +
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPG----PQTGEPVIAPAPE----GYPQQSQYA 387
Query: 449 EPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELL 508
+P ++PV P P P + P +P +
Sbjct: 388 QPAVQYNEPLQQPV--------------QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPY 433
Query: 509 LPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKL 568
P E + E P+ + + P + P + +
Sbjct: 434 YAPAPEQPVAGNAWQAEEQQSTFAPQS-TYQTEQTYQQ----PAAQEPLYQQPQPVEQQP 488
Query: 569 LLPPKPESELLLPPKP 584
++ P+P E P +P
Sbjct: 489 VVEPEPVVEETKPARP 504
Score = 34.3 bits (78), Expect = 0.48
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 5/131 (3%)
Query: 414 VPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLD 473
P Q + + V + Q P+ P +PQ ++PV +P
Sbjct: 750 EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV---APQPQYQQ 806
Query: 474 KKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKP 533
++PV P + P P+P+ P +P L P L+ S P L P P
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP-LHKPTTP 865
Query: 534 EPEL-LLPPKP 543
P L LL P P
Sbjct: 866 LPSLDLLTPPP 876
Score = 32.0 bits (72), Expect = 2.3
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 486 EILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKP 545
E L P EP P+ +P P +P+ + P+P+ + +P
Sbjct: 742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ-------QP 794
Query: 546 ELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP---- 601
+ + P+P+ ++ P P+P+ P +P + P +P+ + P+P+ +L P
Sbjct: 795 QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP--QPQYQQPQQPVAPQPQDTLLHPLLMR 852
Query: 602 ------------PKPEPELLLPPKPEPE 617
P P +LL PP E E
Sbjct: 853 NGDSRPLHKPTTPLPSLDLLTPPPSEVE 880
Score = 32.0 bits (72), Expect = 2.5
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 17/148 (11%)
Query: 453 PQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKP-EPELLLPP 511
P + ++P + ++PV P + P P+P+ P +P P+
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 512 KLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLP 571
+P P +P+ + P+P+ + +P+ P P+P+ LL P LL+
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQ-----QPQQ----PVAPQPQDTLLHP-----LLMR 852
Query: 572 PKPESELLLPPKPEP--ELIIPPKPEPE 597
L P P P +L+ PP E E
Sbjct: 853 NGDSRPLHKPTTPLPSLDLLTPPPSEVE 880
Score = 31.6 bits (71), Expect = 4.0
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 30/147 (20%)
Query: 393 PEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPEL--PEVPELTKTQLPEVPEP 450
P Q + + V + Q P+ P +P+ P+ P + Q + +P
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 451 TKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKP--EPEILLPPKPEPELLLP-------- 500
PQ P ++PV P +P+ + P+P+ LL P
Sbjct: 811 VAPQ--------------PQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDS 856
Query: 501 -PKPEPELLLPPKLEPKLLLPPKSEPE 526
P +P LP LL PP SE E
Sbjct: 857 RPLHKPTTPLP---SLDLLTPPPSEVE 880
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 49.4 bits (118), Expect = 1e-05
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 577 ELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPK-PEPELLLPPKPE 635
E LL P P P P KP P +P P PK +PPK P E PP
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413
Query: 636 PEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPE 677
P + PP P P + + + KP+ PP P E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452
Score = 48.3 bits (115), Expect = 3e-05
Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 559 LLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPK-PEPELLLPPKPEPE 617
LL P P P P KP + P +P P PK IPPK P E PP P
Sbjct: 359 LLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR 415
Query: 618 ILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPE 655
+ PP P P I + KP+ PPK E
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEE 453
Score = 47.5 bits (113), Expect = 4e-05
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPK-PEPELIIPPKP 594
E LL P P P+ P P P +P P PK + +PPK P E PP
Sbjct: 357 EALLVPVPAPQPAKPTAAAPS----PVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPV 412
Query: 595 EPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPE 637
P + PP P P I + KP+ PP P E
Sbjct: 413 PPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452
Score = 47.1 bits (112), Expect = 5e-05
Identities = 23/89 (25%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 529 LPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPEL 588
P KP P +P P PK + P +P + PP + PP P
Sbjct: 367 QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPE 426
Query: 589 IIPPKPEPEILIPPKPEPELLLPPKPEPE 617
P I + KP+ PP P E
Sbjct: 427 SAPKLTRAAIPVDEKPKYT---PPAPPKE 452
Score = 45.2 bits (107), Expect = 2e-04
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 526 ELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPE 585
E LL P P P P KP P +P P P + P +P E PP
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413
Query: 586 PELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPE 627
P + PP P P + + KP+ PP P E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452
Score = 44.0 bits (104), Expect = 4e-04
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 587 ELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK-PEPEILLPPKPE 645
E ++ P P P P KP P +P P PK +PPK P E PP
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413
Query: 646 PELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPE 687
P + PP P + P I + KP+ PP P E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452
Score = 43.3 bits (102), Expect = 9e-04
Identities = 32/112 (28%), Positives = 37/112 (33%), Gaps = 16/112 (14%)
Query: 476 EPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
E +L P P P P KP P +P P PK +PPK +P
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK---------EPVR 404
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPE 587
E PP P + PP P PK P E PP P E
Sbjct: 405 ETATPPPVPPRPVAPPVPHTP----ESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Score = 42.9 bits (101), Expect = 0.001
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 607 ELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEP 666
E LL P P P P KP P +P P PK +PPK P
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE---------PVR 404
Query: 667 EILLPPKPEPELLLPPKPEPELLLPPKPETITTT 700
E PP P + PP P P +T
Sbjct: 405 ETATPPPVPPRPVAPPVPHT----PESAPKLTRA 434
Score = 40.9 bits (96), Expect = 0.004
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 597 EILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPK-PEPELLLPPKPE 655
E L+ P P P P KP P +P P PK +PPK P E PP
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413
Query: 656 SELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
+ P P P + + KP+ PPK E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEE 453
Score = 39.0 bits (91), Expect = 0.016
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 300 ELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQL-PE 358
EL + P P + P PT P + P +P
Sbjct: 352 ELAVIEALLVPVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETA 407
Query: 359 DPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P P P+ P P P+ L + + E P+ T P P++ E
Sbjct: 408 TPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEE 454
Score = 34.8 bits (80), Expect = 0.29
Identities = 33/147 (22%), Positives = 45/147 (30%), Gaps = 17/147 (11%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
P+P KP P P +P P P+ + P T P +P P
Sbjct: 366 PQPAKPT-AAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA-- 418
Query: 409 PQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKE 468
P VP PE V E K P P + + L +L++ E
Sbjct: 419 ---PPVPHT-----PESAPKLTRAAIPVDEKPKYTPP-APPKEEEKALIADG-DVLEQLE 468
Query: 469 PVLLDKKEPVLPPKPEPEILLPPKPEP 495
+ V P P + LL P
Sbjct: 469 AIWKQILRDVPPRSPAVQALLSSGVRP 495
Score = 32.5 bits (74), Expect = 1.8
Identities = 17/87 (19%), Positives = 24/87 (27%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQL 345
P+ P P+ P T P K + E P V P
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP 425
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPE 372
P+ T+ +P D +P E
Sbjct: 426 ESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Score = 31.3 bits (71), Expect = 3.8
Identities = 15/81 (18%), Positives = 19/81 (23%), Gaps = 7/81 (8%)
Query: 281 KKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
+P P E T P P P +P PE
Sbjct: 379 VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKL------- 431
Query: 341 TTLQLPEDPEPTKPQLPEDPE 361
T +P D +P E
Sbjct: 432 TRAAIPVDEKPKYTPPAPPKE 452
Score = 30.9 bits (70), Expect = 4.6
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 393 PEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTK 452
+P P + P P P P+ E T T P P P
Sbjct: 363 VPAPQPAKPTAAAPS----PVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418
Query: 453 PQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPE 486
P + E + + +D+K PP P E
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 49.3 bits (118), Expect = 1e-05
Identities = 37/184 (20%), Positives = 54/184 (29%), Gaps = 17/184 (9%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETT--KPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
P + +V+ Q P V E P V P + EV E E
Sbjct: 850 PQDVQVE-EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE 908
Query: 341 TTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDP-EPTKPQ 399
+ PE + E P+ V + V+EP + T
Sbjct: 909 VVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV 968
Query: 400 LPEDPET-TKPQLPEVPEPTKLQLPEVPEPTKPELPEVPE-----------LTKTQLPE- 446
+ +PE +P P V E + +VPE +T+ PE
Sbjct: 969 VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEY 1028
Query: 447 VPEP 450
VPE
Sbjct: 1029 VPEA 1032
Score = 44.6 bits (106), Expect = 3e-04
Identities = 33/165 (20%), Positives = 47/165 (28%), Gaps = 15/165 (9%)
Query: 293 VPEPTKQELPEVPETTKPQ-LPEVPEPT--KSQLPEVPEPTKPQLPEVLEPTTLQLPEDP 349
V P ++ E E + Q P V E + P V P + EV+E + P
Sbjct: 847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQP 906
Query: 350 EPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKP 409
E PE + E P+ V + E EP P+D
Sbjct: 907 EEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEV----AEHAEPVVE--PQDETADIE 960
Query: 410 QLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
+ E E V EP P P + +
Sbjct: 961 EAAETAE------VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999
Score = 42.7 bits (101), Expect = 0.001
Identities = 39/182 (21%), Positives = 57/182 (31%), Gaps = 20/182 (10%)
Query: 315 VPEPTKSQLPEVPEPTKPQ-LPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEP 373
V P Q+ E E + Q P V E E P + EV E
Sbjct: 847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVS---------APVVEAVAEVVEE 897
Query: 374 TKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPEL 433
P V+ + + E T P++ P T +PQ+ + E EV E +P +
Sbjct: 898 -----PVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQV--ITESDVAVAQEVAEHAEPVV 950
Query: 434 PEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKP 493
E + T ++ + E V V E EPE+ P
Sbjct: 951 EPQDETADIE---EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
Query: 494 EP 495
E
Sbjct: 1008 EA 1009
Score = 33.1 bits (76), Expect = 1.4
Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 26/205 (12%)
Query: 186 TKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAI 245
EET+ +E P +R P + R D E + R DN E +
Sbjct: 582 GGEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTR-DNRTR----REGRENR 636
Query: 246 ESQRRVKRRAAKTRDKIKENIDPELGNLSDLNE---------------DLKKPGEPEVQT 290
E RR +R+A + + +E+ E+ + + D K+ + E +
Sbjct: 637 EENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKA 696
Query: 291 PIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPE-VPEPTKPQLPEVLEPTTLQLPEDP 349
V E + QE E + P + QL + V V + +P
Sbjct: 697 LNVEEQSVQE----TEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEETVAAEP 752
Query: 350 EPTKPQLPEDPEPTKPQLPEVPEPT 374
E K LP V +
Sbjct: 753 VVQ-EVPAPRTELVKVPLPVVAQTA 776
Score = 31.2 bits (71), Expect = 4.4
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 378 LPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVP 437
LP++ E + LP + E + + PE P +P+VP P P
Sbjct: 502 LPKLHE-EAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP-VVAAAPKAAA 559
Query: 438 ELTKTQ 443
Q
Sbjct: 560 ATPPAQ 565
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 46.1 bits (108), Expect = 1e-05
Identities = 32/93 (34%), Positives = 42/93 (45%)
Query: 554 EPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPK 613
EP + K K K ++ P+ E +PEPE +PEPE +
Sbjct: 30 EPADKGITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEE 89
Query: 614 PEPEILLPPKPEPELLLPPKPEPEILLPPKPEP 646
PEPE +PEPE P+PEPE P+PEP
Sbjct: 90 PEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEP 122
Score = 43.0 bits (100), Expect = 1e-04
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 594 PEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK 653
P+ E +PEPE +PEPE +PEPE +PEPE P+PEPE P+
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Query: 654 PE 655
PE
Sbjct: 120 PE 121
Score = 40.7 bits (94), Expect = 0.001
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 604 PEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLK 663
P+ E +PEPE +PEPE +PEPE +PEPE P+PE E +
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Query: 664 PEP 666
PEP
Sbjct: 120 PEP 122
Score = 40.3 bits (93), Expect = 0.001
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 624 PEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPK 683
P+ E +PEPE +PEPE +PE E +PEPE P+PEPE P+
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Query: 684 PEP 686
PEP
Sbjct: 120 PEP 122
Score = 39.2 bits (90), Expect = 0.003
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 466 KKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEP 525
K E + P+ E +PEPE +PEPE + EP+ + EP
Sbjct: 43 KGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEP 102
Query: 526 ELLLPPKPEPELLLPPKPKP 545
E P+PEPE P+P+P
Sbjct: 103 EPEPEPEPEPEPEPEPEPEP 122
Score = 39.2 bits (90), Expect = 0.003
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 493 PEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPK 552
P+ E +PEPE + EP+ + EPE +PEPE P+P+PE P+
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Query: 553 PEP 555
PEP
Sbjct: 120 PEP 122
Score = 38.8 bits (89), Expect = 0.004
Identities = 26/67 (38%), Positives = 33/67 (49%)
Query: 634 PEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPK 693
P+ E +PEPE +PE E +PEPE +PEPE P+PEPE P+
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Query: 694 PETITTT 700
PE T
Sbjct: 120 PEPGAAT 126
Score = 35.3 bits (80), Expect = 0.057
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 503 PEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLP 561
P+ E + EP+ + EPE +PEPE +P+PE P+PEPE P
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEP 118
Score = 34.5 bits (78), Expect = 0.11
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 524 EPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPK 583
+ E +PEPE +P+PE +PEPE+ +P+P+ P+PE E P+
Sbjct: 61 DDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETG-EEEPEPEPEPEPEPEPEPEPEPE 119
Query: 584 PEP 586
PEP
Sbjct: 120 PEP 122
Score = 33.4 bits (75), Expect = 0.27
Identities = 27/94 (28%), Positives = 39/94 (41%)
Query: 432 ELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPP 491
+ P +TK + + TK D D+ E + E +PEPE
Sbjct: 29 DEPADKGITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEE 88
Query: 492 KPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEP 525
+PEPE +PEPE P+ EP+ P+ EP
Sbjct: 89 EPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEP 122
Score = 33.0 bits (74), Expect = 0.44
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 541 PKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILI 600
P +PE P+PE E +P+P+ +PE E +PEPE P+PEPE
Sbjct: 60 PDDEPEEEEEPEPEEEG---EEEPEPEEEGEEEPEPEETGEEEPEPEP--EPEPEPEPEP 114
Query: 601 PPKPEPE 607
P+PEPE
Sbjct: 115 EPEPEPE 121
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 49.0 bits (117), Expect = 2e-05
Identities = 28/155 (18%), Positives = 39/155 (25%), Gaps = 7/155 (4%)
Query: 541 PKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILI 600
+ E P P P + + + + P P P+P
Sbjct: 61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP---- 116
Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLL 660
PP P PP P P++ +P PP P ++ L L
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176
Query: 661 PLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
E P PP P P P
Sbjct: 177 SSPEETA---RAPSSPPAEPPPSTPPAAASPRPPR 208
Score = 45.5 bits (108), Expect = 2e-04
Identities = 32/156 (20%), Positives = 38/156 (24%), Gaps = 9/156 (5%)
Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
+ EP PP P E P E P + S P
Sbjct: 63 DRFEPPTGPPPGPGTE---APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP--- 116
Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
PP P PP P P+L +P PP P + L L
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176
Query: 651 PPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEP 686
E+ P PP P P P
Sbjct: 177 SSPEETA---RAPSSPPAEPPPSTPPAAASPRPPRR 209
Score = 42.9 bits (101), Expect = 0.001
Identities = 26/167 (15%), Positives = 32/167 (19%), Gaps = 9/167 (5%)
Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL 579
PP + + P PP P PP
Sbjct: 71 PPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPT----PPGPSSPDP-PPPTPPPAS 125
Query: 580 LPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEIL 639
PP P P+L +P PP P + L L E
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETA-- 183
Query: 640 LPPKPEPELLLPPKPESELLLPLKPEP-EILLPPKPEPELLLPPKPE 685
P PP P P + P
Sbjct: 184 -RAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
Score = 39.4 bits (92), Expect = 0.016
Identities = 55/348 (15%), Positives = 71/348 (20%), Gaps = 30/348 (8%)
Query: 307 TTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKP-QLPEDPEPTKP 365
+ + P P P E + + PT P DP P P
Sbjct: 62 CDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTP 121
Query: 366 QLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEV 425
P P L E+L P P P P L L
Sbjct: 122 PPASPPPSPAPDLSEMLRPV--GSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSP 179
Query: 426 PEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEP 485
E + E + P P P + P+ P +
Sbjct: 180 EETARAPSSPPAEPPPSTPPAAASPRPP---RRSSPISASASSPAPAPGRSAADDAGASS 236
Query: 486 EILLPPKPE-----PELLLP-PKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
+ PE P P+P P L E P S P E
Sbjct: 237 SDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRE--- 293
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
P P P P P+ ES +
Sbjct: 294 -RSPSPSPSSPGSGP-----APSSPRASSSSSSSRESSS---SSTSSS---SESSRGAAV 341
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPE 647
P P +P P + P P P
Sbjct: 342 SPGPSPSRSPSPSRPPPPADPSSPRKRP---RPSRAPSSPAASAGRPT 386
Score = 37.1 bits (86), Expect = 0.073
Identities = 36/207 (17%), Positives = 45/207 (21%), Gaps = 17/207 (8%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
P P+P PP P PP P P+L + PP + P
Sbjct: 111 PSSPDP----PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA 166
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
+ L L E + P +P PP S P I P
Sbjct: 167 ASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASP---RPPRRSSPISASASSP--- 220
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
P P + P P P + P E
Sbjct: 221 -APAPGRSAADDAGASSSDSSSSES------SGCGWGPENECPLPRPAPITLPTRIWEAS 273
Query: 660 LPLKPEPEILLPPKPEPELLLPPKPEP 686
P P P P
Sbjct: 274 GWNGPSSRPGPASSSSSPRERSPSPSP 300
Score = 32.8 bits (75), Expect = 1.6
Identities = 25/129 (19%), Positives = 28/129 (21%), Gaps = 5/129 (3%)
Query: 572 PKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLP-PKPEPELLL 630
E P P P P E P E P P
Sbjct: 61 ACDRFEPPTGPPPGPGTEAPA-NESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP--- 116
Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLL 690
PP P PP P P+L +P P P + L L
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176
Query: 691 PPKPETITT 699
ET
Sbjct: 177 SSPEETARA 185
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 47.9 bits (115), Expect = 3e-05
Identities = 32/157 (20%), Positives = 48/157 (30%), Gaps = 5/157 (3%)
Query: 282 KPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV-LEP 340
P P + + P+ T P V P +P P Q P V L
Sbjct: 360 HPAAPLPEPEVPPQSAAP-AASAQATAAPTAA-VAPPQAPAVPPPPASAPQQAPAVPLPE 417
Query: 341 TTLQLPEDPEP-TKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
TT QL + + Q + ++P P L + + P K +
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477
Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPTK-PELPE 435
T ++ + P T L + E K PEL
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
Score = 47.9 bits (115), Expect = 3e-05
Identities = 28/162 (17%), Positives = 43/162 (26%), Gaps = 10/162 (6%)
Query: 309 KPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLP 368
P P +PEP P+ P P+ P P +
Sbjct: 360 HPAAP-LPEP-----EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAV 413
Query: 369 EVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEP 428
+PE T L + + Q + ++P L + P
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 429 TKPELPEV----PELTKTQLPEVPEPTKPQILDKKEPVLLDK 466
K E P K + P+ K + +K P L K
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515
Score = 42.9 bits (102), Expect = 0.001
Identities = 30/152 (19%), Positives = 41/152 (26%), Gaps = 8/152 (5%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P+ P P+ P P + PE T L +
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428
Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLD 465
+ Q + ++ P L + + P KKE
Sbjct: 429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP------AKKEAYRWK 482
Query: 466 KKEPVLLDKKEPVLPPKPEPEILLPPKPEPEL 497
PV KKEPV PK + L K PEL
Sbjct: 483 ATNPV-EVKKEPVATPKALKKALEHEK-TPEL 512
Score = 37.5 bits (88), Expect = 0.046
Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 8/127 (6%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKP------QLPEVPEPTKSQLPEVPEPTKPQ-LPEVL 338
P V P P + +PETT QL TK++ E ++ + + L
Sbjct: 397 PAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSAL 456
Query: 339 EPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKP 398
E P K ++ K P + P+ L+ PE
Sbjct: 457 ERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKT-PELAAK 515
Query: 399 QLPEDPE 405
E E
Sbjct: 516 LAAEAIE 522
Score = 35.2 bits (82), Expect = 0.21
Identities = 38/158 (24%), Positives = 48/158 (30%), Gaps = 14/158 (8%)
Query: 393 PEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTK 452
PEP P P + T V P P +P P Q P VP P
Sbjct: 366 PEPEVPPQSAAP-------AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET 418
Query: 453 PQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPK 512
L L + K EP + P + E + P P P K
Sbjct: 419 TSQLLAARQQLQRAQGATKAKKSEPAAASRARP---VNSALERLASVRPAPSALEKAPAK 475
Query: 513 LEP---KLLLPPKSEPELLLPPKPEPELLLPPKPKPEL 547
E K P + + E + PK + L K PEL
Sbjct: 476 KEAYRWKATNPVEVKKEPVATPKALKKALEHEKT-PEL 512
Score = 34.5 bits (80), Expect = 0.39
Identities = 32/173 (18%), Positives = 39/173 (22%), Gaps = 16/173 (9%)
Query: 515 PKLLLPPKSEPELLLPP------KPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKL 568
P LP P P P + P P + PP P P L
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAP-----QQAPAVPL 415
Query: 569 LLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPEL 628
+ K EP +P L E + P P
Sbjct: 416 PETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSAL-----ERLASVRPAPSALE 470
Query: 629 LLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLP 681
P K E P P L L+ E L K E +
Sbjct: 471 KAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIER 523
Score = 33.7 bits (78), Expect = 0.81
Identities = 29/162 (17%), Positives = 41/162 (25%), Gaps = 11/162 (6%)
Query: 557 KLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEP 616
LP P P + P + P P + PP P P
Sbjct: 362 AAPLPEPEVPPQSAAPAASA----QATAAPTAAVAPPQAPAVPPPPASAP----QQAPAV 413
Query: 617 EILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPES---ELLLPLKPEPEILLPPK 673
+ + K EP +P + E L ++P P L
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 674 PEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDK 715
+ E P + T K L +K P L K
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515
Score = 33.3 bits (77), Expect = 0.89
Identities = 27/169 (15%), Positives = 42/169 (24%), Gaps = 13/169 (7%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
P P+ P+ P + + P P + PETT
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420
Query: 409 PQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKE 468
L + + Q + ++P + L + +K P KKE
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP---AKKE 477
Query: 469 PVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKL 517
P P L + E P+L KL
Sbjct: 478 AY------RWKATNPVEVKKEPVATPKALKKALEHEKT----PELAAKL 516
Score = 30.2 bits (69), Expect = 7.4
Identities = 26/156 (16%), Positives = 38/156 (24%), Gaps = 8/156 (5%)
Query: 476 EPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
P + P +PP P P+ P + LP + L + +
Sbjct: 376 APAASAQATAAPTAAVAPPQAPAVPPPPAS----APQQAPAVPLPETTSQLLAARQQLQR 431
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPE 595
K E + P L + P P + P K E P
Sbjct: 432 AQGATKAKKSEPAAASRARPVNSALERLAS----VRPAPSALEKAPAKKEAYRWKATNPV 487
Query: 596 PEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLP 631
P L + E L K E +
Sbjct: 488 EVKKEPVATPKALKKALEHEKTPELAAKLAAEAIER 523
>gnl|CDD|221309 pfam11912, DUF3430, Protein of unknown function (DUF3430). This
family of proteins are functionally uncharacterized. This
protein is found in eukaryotes. Proteins in this family
are typically between 209 to 265 amino acids in length.
Length = 204
Score = 45.2 bits (107), Expect = 6e-05
Identities = 25/202 (12%), Positives = 49/202 (24%), Gaps = 37/202 (18%)
Query: 1009 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFH-QNQSQNYYY 1067
+ Q ++ Y Q+ C S Y + L + N +
Sbjct: 13 LILNFVISQQYINFIPY------QDGDCSGEGSSIGIGYSILLDECITNDNGNNYSFSSF 66
Query: 1068 HQNLSQNYYYHQNLSLKYYCRRNLSQN--------YYCHQNQSQNYYYHQNQSQNYYYHQ 1119
+ N + C Y Y Y + + +
Sbjct: 67 SDSSDGNIIKYNYYE-DSNCSGKPISTETFEIGSCVYSSSYSGSYYSYISSCTDSPEIPS 125
Query: 1120 NQSQKYYYH----QNLSQNYYY----------HQNLSQNYYCHQNQSQNYYYHQNQSQKY 1165
N YY+ N + Y + S YYC+ N Y
Sbjct: 126 NSLVTVYYNGSDCSNDNFLYIEYFTNNTCINNNNGFSFTYYCNST---NQPYTTYCKSSN 182
Query: 1166 YYHQNLSQNCYYHQNRSQNYYY 1187
+ ++ +C +++ +
Sbjct: 183 CNNSPITLSC----SQNNPFKN 200
Score = 39.8 bits (93), Expect = 0.004
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 14/115 (12%)
Query: 989 EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
EIG Y Y Y + + + N SL C N + Y
Sbjct: 96 EIGSCVYSSSYSGSYYSYISSCTDSPEIPSN-SLVTV----YYNGSDC-SNDNFLYIEYF 149
Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQNYYYH------QNLSLKYYCRRNLSQNYYC 1097
N + + S YY + +Q Y + N + C +N C
Sbjct: 150 TN-NTCINNNNGFSFTYYCNST-NQPYTTYCKSSNCNNSPITLSCSQNNPFKNTC 202
Score = 29.8 bits (67), Expect = 6.1
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 16/91 (17%)
Query: 1146 YCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKN 1205
C N + N Y + S + N + NYY N S ++ +
Sbjct: 51 ECITNDNGNNYSFSSFSD------SSDGNIIKY-----NYYEDSNCSGKPI--STETFEI 97
Query: 1206 ---YYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
Y Y Y + + + NS
Sbjct: 98 GSCVYSSSYSGSYYSYISSCTDSPEIPSNSL 128
Score = 29.8 bits (67), Expect = 6.9
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 18/115 (15%)
Query: 1129 QNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQ-SQKYYYHQNLSQN-CYYHQNRSQNYY 1186
N + N Y S + N + YY + S K + C Y + S +YY
Sbjct: 54 TNDNGNNYS--FSSFSDSSDGNIIKYNYYEDSNCSGKPISTETFEIGSCVYSSSYSGSYY 111
Query: 1187 YHQNLSQN-----------YYYHQNQSQKN---YYYHLNLSQNYYYHQNLSQNYY 1227
+ + + YY+ + + Y + + + S YY
Sbjct: 112 SYISSCTDSPEIPSNSLVTVYYNGSDCSNDNFLYIEYFTNNTCINNNNGFSFTYY 166
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 46.2 bits (110), Expect = 6e-05
Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 10/137 (7%)
Query: 327 PEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTK 386
P Q E P+ +P +P +VP P+ +
Sbjct: 73 HAPANAQEHEAARPSP---QHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129
Query: 387 LQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPE 446
Q P+P +P P P+V + + P P P
Sbjct: 130 QQPAYQPQPEQPLQQ-------PVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPV 182
Query: 447 VPEPTKPQILDKKEPVL 463
+KE V+
Sbjct: 183 AEPAPVMDKPKRKEAVI 199
Score = 41.6 bits (98), Expect = 0.002
Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 14/149 (9%)
Query: 284 GEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTL 343
G EV+ V + E +P +P + +P +V
Sbjct: 62 GVGEVRVHRVNHAPAN--AQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAP 119
Query: 344 QLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPED 403
+ + Q P+P +P V P V P+P +
Sbjct: 120 RPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPV--------HSAPQPAQQAF--- 168
Query: 404 PETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
+ +P PEP P + +P + E
Sbjct: 169 -QPAEPVAAPQPEPVAEPAPVMDKPKRKE 196
Score = 39.6 bits (93), Expect = 0.009
Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 1/122 (0%)
Query: 448 PEPTKPQILDKKEPVLLDKKEPVLLDKK-EPVLPPKPEPEILLPPKPEPELLLPPKPEPE 506
P Q + P + +P + + PE ++ P P P +
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP 132
Query: 507 LLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKP 566
P +P P P+ E + P+PEP P KP
Sbjct: 133 AYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192
Query: 567 KL 568
K
Sbjct: 193 KR 194
Score = 36.6 bits (85), Expect = 0.063
Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 9/127 (7%)
Query: 360 PEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTK 419
P Q E P+ PQ +P +P + P P+ +
Sbjct: 73 HAPANAQEHEAARPS-PQHQY--QPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129
Query: 420 LQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVL 479
Q P+P +P V P+ +P EPV + EPV
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPA-PQPVHSAPQPAQQAFQPA-----EPVAAPQPEPVA 183
Query: 480 PPKPEPE 486
P P +
Sbjct: 184 EPAPVMD 190
Score = 35.8 bits (83), Expect = 0.14
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 3/118 (2%)
Query: 581 PPKPEPELIIPPKPEPEILIPP---KPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPE 637
+ +P P+ P +P + PE ++ P P P +
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP 132
Query: 638 ILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
P +P + P+ P+ E + P+PEP P +
Sbjct: 133 AYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMD 190
Score = 35.0 bits (81), Expect = 0.21
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 2/118 (1%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPP--KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPE 597
+ +P P+ PP +P+ + PE+++ P P P +
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP 132
Query: 598 ILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPE 655
P +P P P+ E + P+PEP P +
Sbjct: 133 AYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMD 190
Score = 34.6 bits (80), Expect = 0.27
Identities = 28/134 (20%), Positives = 40/134 (29%), Gaps = 14/134 (10%)
Query: 393 PEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTK 452
P Q E + PQ P Q P + PE P P +
Sbjct: 73 HAPANAQEHEAARPS-PQHQYQPPYASAQ----PRQPVQQPPEAQ----VPPQHAPRPAQ 123
Query: 453 PQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPK 512
P ++P + E L P + P P+P P P + P +P P+
Sbjct: 124 PAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ-PAQQAFQPAEPVAA----PQ 178
Query: 513 LEPKLLLPPKSEPE 526
EP P +
Sbjct: 179 PEPVAEPAPVMDKP 192
Score = 33.9 bits (78), Expect = 0.53
Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 6/132 (4%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
P Q E P+ PQ P Q + + P P+ +
Sbjct: 73 HAPANAQEHEAARPS-PQHQYQPPYASAQ--PRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129
Query: 409 PQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP-EPTKPQILDKKEPVLLDKK 467
Q P+P + V P P + Q + +P +P + EPV
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAP--APQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAP 187
Query: 468 EPVLLDKKEPVL 479
+KE V+
Sbjct: 188 VMDKPKRKEAVI 199
Score = 33.9 bits (78), Expect = 0.55
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 7/128 (5%)
Query: 550 PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELL 609
P +P +P P +P + P P +P P+ +
Sbjct: 70 RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129
Query: 610 LPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEIL 669
P +P+ P + + P P+P P P + P +P + P+PE +
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ-PAQQAFQPAEPVAA------PQPEPV 182
Query: 670 LPPKPEPE 677
P P +
Sbjct: 183 AEPAPVMD 190
Score = 33.5 bits (77), Expect = 0.69
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 10/129 (7%)
Query: 520 PPKSEPELLLPPKPEPEL-LLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESEL 578
+ + +P P+ PP + P + PE P P +P +
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPE----AQVPPQHAPRPAQPAPQP 128
Query: 579 LLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEI 638
+ P +P+ P + + P P+P P P + P +P P+PEP
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ-PAQQAFQPAEPVAA----PQPEPVA 183
Query: 639 LLPPKPEPE 647
P +
Sbjct: 184 EPAPVMDKP 192
Score = 30.4 bits (69), Expect = 6.6
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 6/130 (4%)
Query: 477 PVLPPKPEPEILLPPKPEPELLLPP---KPEPELLLPPKLEPKLLLPPKSEPELLLPPKP 533
V + +P P+ P +P + E ++ P P
Sbjct: 70 RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129
Query: 534 EPELLLPPKPKPEL-LLPPKPEPEKLLLPPKPKP--KLLLPPKPESELLLPPKPEPELII 590
+ P +P + P+ P + P+P + P +P + P EP ++
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189
Query: 591 PPKPEPEILI 600
E +I
Sbjct: 190 DKPKRKEAVI 199
Score = 30.0 bits (68), Expect = 8.5
Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 7/130 (5%)
Query: 415 PEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDK 474
P Q E P+ P+ P Q P P P+ + P
Sbjct: 73 HAPANAQEHEAARPS-PQHQYQPPYASAQ-PRQPVQQPPEAQVPPQHA----PRP-AQPA 125
Query: 475 KEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPE 534
+PV P +P+ P + + P P+P P + P
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP 185
Query: 535 PELLLPPKPK 544
++ PK K
Sbjct: 186 APVMDKPKRK 195
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 45.2 bits (107), Expect = 9e-05
Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 6/152 (3%)
Query: 297 TKQELPEVP-ETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQ 355
K +P + + T LP PE S + + + +P+ EP ++ E P + Q
Sbjct: 40 KKAPIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIG-VPQPTEPAAVKDAERLTPEQRQ 98
Query: 356 L----PEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQL 411
L D + QL E PE + + + K Q T+P P+ +
Sbjct: 99 LLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPV 158
Query: 412 PEVPEPTKLQLPEVPEPTKPELPEVPELTKTQ 443
P P ++ E P P+ + +T+
Sbjct: 159 APAPAPEPVEKAPKAEAAPPPKPKAEDAAETR 190
Score = 36.7 bits (85), Expect = 0.056
Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 21/163 (12%)
Query: 554 EPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP-PKPEPELLLPP 612
+ + LLP KPE E I + +I +P P +
Sbjct: 40 KKAPIPFLSNQGTGSLLPNKPE---------EVWSYIKALEDRQIGVPQPTEPAAVKDAE 90
Query: 613 KPEPE-------ILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPP----KPESELLLP 661
+ PE + + K +P L + I P+ + + + + P
Sbjct: 91 RLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKP 150
Query: 662 LKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLL 704
+P+ + P + PK E PK E T+ +L
Sbjct: 151 RPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAEDAAETRYML 193
Score = 34.8 bits (80), Expect = 0.19
Identities = 34/145 (23%), Positives = 49/145 (33%), Gaps = 13/145 (8%)
Query: 474 KKEPVL-PPKPEPEILLPPKPE------PELLLPPKPEPELLLPPKLEPKLLLPPKSEPE 526
KK P+ LLP KPE L P+ P ++ L P+
Sbjct: 40 KKAPIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQRQL 99
Query: 527 L---LLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESEL--LLP 581
L + K +P L + + P+ + +K + PKP E +
Sbjct: 100 LEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVA 159
Query: 582 PKPEPELI-IPPKPEPEILIPPKPE 605
P P PE + PK E PK E
Sbjct: 160 PAPAPEPVEKAPKAEAAPPPKPKAE 184
Score = 34.8 bits (80), Expect = 0.22
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 14/148 (9%)
Query: 428 PTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEI 487
T LP PE + + + + + EP + E L ++ +L +
Sbjct: 51 GTGSLLPNKPEEVWSYIKALEDRQIG-VPQPTEPAAVKDAER-LTPEQRQLLEQMEVDQ- 107
Query: 488 LLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPEL 547
K +P L + + P+ + + ++ P KP+P P KP+P
Sbjct: 108 ----KAQPTQLGEQPEQARIEEQPRTQSQKA-QSQATTVQTQPVKPKPR---PEKPQP-- 157
Query: 548 LLPPKPEPEKLLLPPKPKPKLLLPPKPE 575
+ P P PE + PK + PK E
Sbjct: 158 -VAPAPAPEPVEKAPKAEAAPPPKPKAE 184
Score = 34.4 bits (79), Expect = 0.28
Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 16/154 (10%)
Query: 511 PKLEPKLLLPPKSEPELLLPPKP-EPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPK-- 567
+ + LLP KP E + ++ +P EP + + P+
Sbjct: 38 HHKKAPIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQR 97
Query: 568 -----LLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPP 622
+ + K + L + + P+ + + + P KP+P P
Sbjct: 98 QLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQK-AQSQATTVQTQPVKPKPR---PE 153
Query: 623 KPEPELLLPPKPEPE-ILLPPKPEPELLLPPKPE 655
KP+P + P P PE + PK E PK E
Sbjct: 154 KPQP---VAPAPAPEPVEKAPKAEAAPPPKPKAE 184
Score = 34.4 bits (79), Expect = 0.28
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 329 PTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQ 388
T LP E + + P+PT+P + E P+ ++LE +
Sbjct: 51 GTGSLLPNKPEEVWSYIKALEDRQIGV----PQPTEPAAVKDAERLTPEQRQLLEQM--E 104
Query: 389 LPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP 448
+ + +PT QL E PE + + + K Q T+P P+ + P
Sbjct: 105 VDQKAQPT--QLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVAPAP 162
Query: 449 EPTKPQILDKKEPV 462
P + K E
Sbjct: 163 APEPVEKAPKAEAA 176
Score = 31.3 bits (71), Expect = 2.8
Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 14/153 (9%)
Query: 486 EILLPPKPEPELLLPPKPEPELLLPPKLEPKL--LLPPKSEPELLLPPKPEPELLLPPKP 543
I LLP KPE LE + + P + + PE +
Sbjct: 43 PIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPE---QRQL 99
Query: 544 KPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPK 603
++ + K +P +L P + ++ P+ +S+ + P KP+P P K
Sbjct: 100 LEQMEVDQKAQPTQLGEQP-EQARIEEQPRTQSQ-KAQSQATTVQTQPVKPKPR---PEK 154
Query: 604 PEPELLLPPKPEPE-ILLPPKPEPELLLPPKPE 635
P+P + P P PE + PK E PK E
Sbjct: 155 PQP---VAPAPAPEPVEKAPKAEAAPPPKPKAE 184
Score = 31.0 bits (70), Expect = 3.7
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 278 EDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV 337
E E + VP+PT+ + E P+ ++ E ++ + +PT QL E
Sbjct: 62 EVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQM--EVDQKAQPT--QLGEQ 117
Query: 338 LEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTK 397
P ++ E P + + Q P P+P + P+ + P P + K
Sbjct: 118 --PEQARIEEQPRTQSQKAQSQATTVQTQ-PVKPKPRPEK-PQPVAPAPAPEP-VEKAPK 172
Query: 398 PQLPEDPETTKP 409
+ P+
Sbjct: 173 AEAAPPPKPKAE 184
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 46.1 bits (109), Expect = 1e-04
Identities = 56/279 (20%), Positives = 80/279 (28%), Gaps = 32/279 (11%)
Query: 294 PEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTK 353
P + + + P+ P P PE + E P K +P L P T ED +P
Sbjct: 328 VPPKESDAADGPKPV-PTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAY--EDLKPPT 384
Query: 354 PQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPE 413
+P P + V KP P + P++ K P
Sbjct: 385 SPIPTPPSSSPASSKSVDAVAKPAEP------DVVPSPGSASNVPEVEPAQVEAKKTRPL 438
Query: 414 VPEPT--KLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVL 471
P L+ P P PT P + + +P VP+
Sbjct: 439 SPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATA---------------- 482
Query: 472 LDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPP 531
+ PP L P +L P P P + K
Sbjct: 483 --ATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTA 540
Query: 532 KPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLL 570
+ + PKP+P L P E L P P P +L
Sbjct: 541 LADEQHHAQPKPRP---LSPYTMYEDLKPPTSPTPSPVL 576
Score = 39.1 bits (91), Expect = 0.016
Identities = 44/187 (23%), Positives = 57/187 (30%), Gaps = 18/187 (9%)
Query: 278 EDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV 337
EDLK P P P P + V KP P+V P+ VPE Q+
Sbjct: 378 EDLKPPTSP---IPTPPSSSPASSKSVDAVAKPAEPDVV-PSPGSASNVPEVEPAQVEAK 433
Query: 338 ----LEPTT----LQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQL 389
L P L+ P P PT P + +P VP+ T P
Sbjct: 434 KTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPD-TAP--ATAATDAAAPP 490
Query: 390 PEDPEPTKPQLPED---PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPE 446
P + P P D P T+ V + EV + P +
Sbjct: 491 PANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQP 550
Query: 447 VPEPTKP 453
P P P
Sbjct: 551 KPRPLSP 557
Score = 37.6 bits (87), Expect = 0.042
Identities = 66/312 (21%), Positives = 85/312 (27%), Gaps = 48/312 (15%)
Query: 326 VPEPTKPQLP--EVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLE 383
+ E T P P E+L Q E P+ P PTKP PE P P
Sbjct: 306 IAETTAPLTPMEELLAKIPSQRVPPKESDAADGPK-PVPTKPVTPEAPSP---------- 354
Query: 384 PTKLQLPEDPEPTKP----QLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPEL 439
P + EP +P P P T L P P P +
Sbjct: 355 ------PIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPI-------PTPPSSSPASSKSV 401
Query: 440 TKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLL 499
P EP V + V K P+ P ++ P P
Sbjct: 402 DAVAKPA--EPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPS----- 454
Query: 500 PPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLL 559
P + + P + P P P +P L P + L
Sbjct: 455 -PTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPP---PANMRP---LSPYAVYDDLK 507
Query: 560 LPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEIL 619
P P P + S K + + PKP P L P E L
Sbjct: 508 PPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRP---LSPYTMYEDL 564
Query: 620 LPP-KPEPELLL 630
PP P P +L
Sbjct: 565 KPPTSPTPSPVL 576
Score = 33.4 bits (76), Expect = 0.96
Identities = 58/252 (23%), Positives = 77/252 (30%), Gaps = 33/252 (13%)
Query: 471 LLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPE--PELLLPPK---LEPKLLLPPKSEP 525
LL K P E + PKP P + P+ P PP+ + P+ L P +
Sbjct: 319 LLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYE 378
Query: 526 ELLLP--PKPEPELLLPPKPKP--------ELLLPPKPE-----PEKLLLPPKPKPKLLL 570
+L P P P P P K E + P P PE + K L
Sbjct: 379 DLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPL 438
Query: 571 PPKPESELLLPP---KPEPELIIPPKPEPEILIPPKPEP-------ELLLPPKPEPEILL 620
P E L PP P + P +P P+ + PP L
Sbjct: 439 SPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLS 498
Query: 621 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLL 680
P +L P P P + K + + + PKP P L
Sbjct: 499 PYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRP---L 555
Query: 681 PPKPEPELLLPP 692
P E L PP
Sbjct: 556 SPYTMYEDLKPP 567
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 44.3 bits (105), Expect = 2e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
+P PE ++ P+PEPE + PPK P ++ P+P+ + PKP+P + +P+ E+
Sbjct: 63 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVK 122
Query: 600 IPPKPEPELLLPPKP 614
P +P P
Sbjct: 123 -PVEPRPASPFENTA 136
Score = 43.5 bits (103), Expect = 3e-04
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 476 EPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
EP +P PE ++ P+PEPE P PE PPK P ++ P+P+P
Sbjct: 59 EPPQAVQPPPEPVVEPEPEPE------PIPE-------------PPKEAPVVIPKPEPKP 99
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKP 574
+ PKPKP + +P+ E + P +P+P
Sbjct: 100 KPKPKPKPKPVKKVEEQPKRE--VKPVEPRPASPFENTA 136
Score = 43.5 bits (103), Expect = 3e-04
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
P +P S ++ P +P PE ++ P+PEPE P PE PPK P ++
Sbjct: 44 PAQPISVTMVAPADLEP-PQAVQPPPEPVVEPEPEPE------PIPE---PPKEAPVVIP 93
Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKP 674
P+P+P+ PKP+P + +P+ E + P++P P
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKRE-VKPVEPRPASPFENTA 136
Score = 43.5 bits (103), Expect = 3e-04
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 583 KPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPP 642
EL P +P ++ P +P PE ++ P+PEPE P PE PP
Sbjct: 36 HQVIELPAPAQPISVTMVAPADLEPPQ-AVQPPPEPVVEPEPEPE------PIPE---PP 85
Query: 643 KPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKT 702
K P ++ P+P+ + KP+P + +P+ E + P +P P T+ T
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE-VKPVEPRPASPFENTAPARPTSST 144
Score = 40.4 bits (95), Expect = 0.003
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 510 PPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLL 569
P LEP + P EP + P+PEP + PPK P ++ P+P+P+ PKPKPK
Sbjct: 55 PADLEPPQAVQPPPEPVVEPEPEPEP-IPEPPKEAPVVIPKPEPKPK-----PKPKPK-- 106
Query: 570 LPPKPESELLLPPKPEPELIIPPKPEPEILIPPKP 604
PKP ++ PK E + P +P P
Sbjct: 107 --PKPVKKVEEQPKREVK---PVEPRPASPFENTA 136
Score = 34.3 bits (79), Expect = 0.30
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 410 QLPEVPEPTKLQL--PEVPEPTKPELPEVPELTKTQLPE---VPEPTKPQILDKKEPVLL 464
+LP +P + + P EP + P PE PE +PEP K PV++
Sbjct: 40 ELPAPAQPISVTMVAPADLEPPQAVQPP-PEPVVEPEPEPEPIPEPPKE------APVVI 92
Query: 465 DKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPP 511
K EP K +P PKP+P + +P+ E + P +P P
Sbjct: 93 PKPEP----KPKPKPKPKPKPVKKVEEQPKRE-VKPVEPRPASPFEN 134
Score = 32.3 bits (74), Expect = 1.1
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 5/137 (3%)
Query: 327 PEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPE-VPEPTKPQLPEVLEPT 385
P + + T + + P Q P +P PE +PEP K P V+
Sbjct: 37 QVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA-PVVIPKP 95
Query: 386 KLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLP 445
+ + P+P KP+ + E + + EP E P +P P
Sbjct: 96 EPKPKPKPKP-KPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTAT--AAASKP 152
Query: 446 EVPEPTKPQILDKKEPV 462
+ P+ L + +P
Sbjct: 153 VTSVSSGPRALSRNQPQ 169
Score = 29.7 bits (67), Expect = 10.0
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 305 PETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTK 364
P +P P P PEP +PE + + +P+ KP+ P+P K
Sbjct: 55 PADLEPPQAVQPPPEPVV---EPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVK 111
Query: 365 PQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKP 398
+ KP P P + P P +
Sbjct: 112 KVEEQPKREVKPVEPRPASPFENTAPARPTSSTA 145
>gnl|CDD|227588 COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General
function prediction only].
Length = 313
Score = 43.7 bits (103), Expect = 4e-04
Identities = 36/272 (13%), Positives = 70/272 (25%), Gaps = 34/272 (12%)
Query: 995 YFHQNQSQNYYYHQNLSQNYYYHQNLSLKYY----CRRNLSQNYYCHQ------NQSPNN 1044
+ Y+ + + + + + Y SPN
Sbjct: 20 NRVFSSGDEYWKEGYSDIHAKEVSDKKDFDFDKVAGKMKIGGAYKPKPSTAIQIGTSPNT 79
Query: 1045 YYYHLNLSQN-YYFHQN-QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
++ YYF + Q L+ + L + + + +
Sbjct: 80 TSGEVSQYGAWYYFKADGVKNEKQGKQILTADGEAPSGKWLGTSSYQEIYYLKASGRYAT 139
Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLS--QNYYYHQNLSQNYYCHQNQSQNYYYHQN 1160
YY + YYY+++ N + N S Y + ++
Sbjct: 140 NYYYDKSGTMAKKGWVYENGHWYYYNKDGGYAANGWQKDNGSWYYLKSDGGMMKTGWVKD 199
Query: 1161 QSQKYYYHQNLSQNCYYHQNRSQNYYYH----------QNLSQNYYY----------HQN 1200
S K+YY + ++YY N S +YY
Sbjct: 200 SSGKWYYFGSSGMMATGWVKDKGSWYYLDDSGDMATGWVNDSGRWYYLDGSGAMATGWVK 259
Query: 1201 QSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
+ YY + +S +YY +S
Sbjct: 260 DNGNWYYLDASGGAMKTGWFKVSGKWYYLYSS 291
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 42.4 bits (100), Expect = 0.001
Identities = 20/133 (15%), Positives = 26/133 (19%), Gaps = 3/133 (2%)
Query: 559 LLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEI 618
LL KP E + P+ P P P P
Sbjct: 361 LLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA 420
Query: 619 LLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPEL 678
P P P + +P++ PE P
Sbjct: 421 APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE---PAVASAAP 477
Query: 679 LLPPKPEPELLLP 691
P L P
Sbjct: 478 APAAAPAAARLTP 490
Score = 41.2 bits (97), Expect = 0.003
Identities = 22/136 (16%), Positives = 27/136 (19%), Gaps = 17/136 (12%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT 342
E +TP PE V + P + P P P
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP---------- 422
Query: 343 LQLPEDPEPTKPQLPEDPEPTKPQLPE-VPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLP 401
P P P P V P E + + PEP
Sbjct: 423 ------PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476
Query: 402 EDPETTKPQLPEVPEP 417
P P
Sbjct: 477 PAPAAAPAAARLTPTE 492
Score = 40.5 bits (95), Expect = 0.006
Identities = 21/136 (15%), Positives = 26/136 (19%), Gaps = 8/136 (5%)
Query: 498 LLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLP--PKPKPELLLPPKPEP 555
LL KP E K P++ P + P P P
Sbjct: 361 LLAFKPAAAAEAAAPAEKKTPARPEAAAP---AAAPVAQAAAAPAPAAAPAAAASAPAAP 417
Query: 556 EKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPE 615
P P + IP + PE P
Sbjct: 418 PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE---PAVAS 474
Query: 616 PEILLPPKPEPELLLP 631
P L P
Sbjct: 475 AAPAPAAAPAAARLTP 490
Score = 40.5 bits (95), Expect = 0.006
Identities = 18/131 (13%), Positives = 26/131 (19%)
Query: 569 LLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPEL 628
LL KP + E + P+ P P P P
Sbjct: 361 LLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA 420
Query: 629 LLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPEL 688
P P P + + +P + PE +
Sbjct: 421 APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA 480
Query: 689 LLPPKPETITT 699
P T
Sbjct: 481 AAPAAARLTPT 491
Score = 38.2 bits (89), Expect = 0.033
Identities = 22/137 (16%), Positives = 29/137 (21%), Gaps = 10/137 (7%)
Query: 538 LLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPE---PELIIPPKP 594
LL KP E + P P P ++ P P P
Sbjct: 361 LLAFKPAAAAEAAAPAEKKTPARPEAAAPA----AAPVAQAAAAPAPAAAPAAAASAPAA 416
Query: 595 EPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKP 654
P P P P + +P + PE P
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE---PAVA 473
Query: 655 ESELLLPLKPEPEILLP 671
+ P L P
Sbjct: 474 SAAPAPAAAPAAARLTP 490
Score = 38.2 bits (89), Expect = 0.033
Identities = 24/138 (17%), Positives = 29/138 (21%), Gaps = 25/138 (18%)
Query: 474 KKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKP 533
KK P P P P + P P P + P
Sbjct: 378 KKTPARPEAAAPA----AAPVAQAAAAPAPAA-------------APAAAAS----APAA 416
Query: 534 EPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPK 593
P P P P P PE+ +P + PE P
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV-AIPVRVAPE---PAV 472
Query: 594 PEPEILIPPKPEPELLLP 611
P L P
Sbjct: 473 ASAAPAPAAAPAAARLTP 490
Score = 37.8 bits (88), Expect = 0.040
Identities = 21/132 (15%), Positives = 28/132 (21%), Gaps = 14/132 (10%)
Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL 579
+E + P+ P + P P P P P +
Sbjct: 373 AAPAEKKTPARPEAAAP---AAAPVAQAAAAPAPAA----APAAAASA---PAAPPAAAP 422
Query: 580 LPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEIL 639
P P P P PE +P + PE P
Sbjct: 423 PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV-AIPVRVAPE---PAVASAAPA 478
Query: 640 LPPKPEPELLLP 651
P L P
Sbjct: 479 PAAAPAAARLTP 490
Score = 33.5 bits (77), Expect = 0.73
Identities = 19/124 (15%), Positives = 24/124 (19%), Gaps = 11/124 (8%)
Query: 390 PEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
P PE P + P P P P P
Sbjct: 381 PARPEAAAPAAAPVAQAAAAPAPAAAPAA-----AASAPAAPPAAAPPAPVAAPAAAAPA 435
Query: 450 PTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLL 509
V L P + +P + PE P P L
Sbjct: 436 AAPAAAP---AAVALAPAPPAQAAPETVAIPVRVAPE---PAVASAAPAPAAAPAAARLT 489
Query: 510 PPKL 513
P +
Sbjct: 490 PTEE 493
Score = 30.5 bits (69), Expect = 7.2
Identities = 16/110 (14%), Positives = 18/110 (16%), Gaps = 6/110 (5%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P PE P + P P P P P
Sbjct: 381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA-----AAPPAPVAAPAAAAPA 435
Query: 406 TTKPQLPE-VPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
P V PE + PE P
Sbjct: 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 42.2 bits (99), Expect = 0.002
Identities = 29/181 (16%), Positives = 37/181 (20%), Gaps = 8/181 (4%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
P P P P P P E
Sbjct: 387 PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
P P P P P+P + P P + P + P
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506
Query: 600 IPPKPEPELLLPPK------PEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK 653
P P P P+P P L P P E ++ P+
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP--APRAAAATEPVVAPR 564
Query: 654 P 654
P
Sbjct: 565 P 565
Score = 41.4 bits (97), Expect = 0.003
Identities = 29/192 (15%), Positives = 38/192 (19%), Gaps = 13/192 (6%)
Query: 510 PPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLL 569
P P + P P P P P+ L
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA--AAARAVAAAPARRSPAPEAL 433
Query: 570 LPPKPESELLLPPKPEPELIIPPKPEPEI---LIPPKPEPELLLPPKPEPEILLPPKPEP 626
+ S P P P P+P P P
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD 493
Query: 627 ELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPK--- 683
+ P + P P P P +E + P+P P L P
Sbjct: 494 DDPPPWEELPPEFASPAPAQPDAAPAGWVAESI----PDPATADPDDAFETLAPAPAAAP 549
Query: 684 -PEPELLLPPKP 694
P P
Sbjct: 550 APRAAAATEPVV 561
Score = 41.0 bits (96), Expect = 0.004
Identities = 27/171 (15%), Positives = 34/171 (19%), Gaps = 10/171 (5%)
Query: 477 PVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKP--- 533
P P P + P PE L + P P
Sbjct: 402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA 461
Query: 534 EPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPK 593
P+P P P PP E P P
Sbjct: 462 ARPAAAGPRPVAAAAAAAPARAAP---AAAPAPADDDPPPWEELPPEFASPAPAQPDAAP 518
Query: 594 PEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKP 644
P+P P L P P E ++ P+P
Sbjct: 519 AGWV--AESIPDPATADPDDAFET--LAPAPAAAPAPRAAAATEPVVAPRP 565
Score = 39.1 bits (91), Expect = 0.015
Identities = 23/157 (14%), Positives = 31/157 (19%), Gaps = 5/157 (3%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQ----LPEVPEPTKPQLPEVL 338
P P + L + + P P + P
Sbjct: 415 AARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAA 474
Query: 339 EPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKP 398
P +DP P + PE P Q + DP P
Sbjct: 475 AAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534
Query: 399 QLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPE 435
+ P P P V P P
Sbjct: 535 DDAFETLAPAPAAAPAPRAAAATEPVVA-PRPPRASA 570
Score = 38.3 bits (89), Expect = 0.030
Identities = 33/205 (16%), Positives = 43/205 (20%), Gaps = 15/205 (7%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
P P P P P P ++ P PE L
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPA-AAPAAAAAARAVAAAPARRSPAPEALA 434
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
+ P P P P P P+P
Sbjct: 435 AARQASARGPGGAPAPAP---APAAAPAAAARPAAA-----GPRPVAAAAAAAPARAAPA 486
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
P P + P + P P P P E P+P P L
Sbjct: 487 AAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE----SIPDPATADPDDAFETLA 542
Query: 660 LPLKPEPEILLPPKPEPELLLPPKP 684
P E ++ P+P
Sbjct: 543 PA--PAAAPAPRAAAATEPVVAPRP 565
Score = 36.8 bits (85), Expect = 0.094
Identities = 27/174 (15%), Positives = 37/174 (21%), Gaps = 9/174 (5%)
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELI 589
P + P P P P P P + + P PE +
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433
Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEI---LLPPKPEPELLLPPKPEPEILLPPKPEP 646
+ P P P P+P P P
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD 493
Query: 647 ELL-----LPPKPESELLLPLKPEP-EILLPPKPEPELLLPPKPEPELLLPPKP 694
+ LPP+ S P + P+P P L P
Sbjct: 494 DDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547
Score = 34.9 bits (80), Expect = 0.29
Identities = 29/187 (15%), Positives = 43/187 (22%), Gaps = 14/187 (7%)
Query: 423 PEVPEPTKPELPEVPELTKTQLPEVPEPTKPQIL--DKKEPVLLDKKEPVLLDKKEPVLP 480
P P P + ++ P E + ++
Sbjct: 388 AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP----EALAAARQASARG 443
Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPE---PEL 537
P P P P P P P ++ P P + P
Sbjct: 444 PGGAPAPAPAPAAAPAAAARPAAAG---PRPVAAAAAAAPARAAPAAAPAPADDDPPPWE 500
Query: 538 LLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPE 597
LPP+ P P + P P P L P P E
Sbjct: 501 ELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET--LAPAPAAAPAPRAAAATE 558
Query: 598 ILIPPKP 604
++ P+P
Sbjct: 559 PVVAPRP 565
Score = 33.7 bits (77), Expect = 0.70
Identities = 29/221 (13%), Positives = 42/221 (19%), Gaps = 38/221 (17%)
Query: 362 PTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQL--PEVPEPTK 419
T P P P P P P + P P
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPA----PAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430
Query: 420 LQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVL 479
L + + P P
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAA-APAAAARP----------------------AAA 467
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELL-----LPPKL-EPKLLLPPKSEPELLLPPKP 533
P+P P P + LPP+ P P + + P
Sbjct: 468 GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527
Query: 534 EPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKP 574
+P P L P P + ++ P+P
Sbjct: 528 DPATADPDDAFETLAPAPAAAP---APRAAAATEPVVAPRP 565
Score = 32.2 bits (73), Expect = 2.4
Identities = 20/162 (12%), Positives = 28/162 (17%), Gaps = 9/162 (5%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
P P P P P + + P PE L
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAA--AARAVAAAPARRSPAPEAL 433
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
+ P P P P+P +
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAA---ARPAAA----GPRPVAAAAAAAPARAAPA 486
Query: 660 LPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTK 701
P + P + P P P P +
Sbjct: 487 AAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD 528
Score = 31.8 bits (72), Expect = 3.1
Identities = 29/216 (13%), Positives = 39/216 (18%), Gaps = 36/216 (16%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
P P P P P P L + +
Sbjct: 386 APAAAAPAAAAPAPAAPPAAPAAAPAAAAAA----RAVAAAPARRSPAPEALAAARQASA 441
Query: 409 PQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKE 468
P P P P P P
Sbjct: 442 RGPGGAPAPAPAPAA-APAAAAR-------------PAAAGPRPVAAAAAAAPA------ 481
Query: 469 PVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELL 528
+ P P P + P + P P P P +P
Sbjct: 482 -----RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV----AESIPDPATA 532
Query: 529 LPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKP 564
P L P P P + ++ P+P
Sbjct: 533 DPDDAFETLAPAPAAAP---APRAAAATEPVVAPRP 565
Score = 31.4 bits (71), Expect = 3.8
Identities = 25/203 (12%), Positives = 33/203 (16%), Gaps = 4/203 (1%)
Query: 426 PEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEP 485
+ + P P P P V P+
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALA 434
Query: 486 EILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKP 545
P P P P P P+ P P
Sbjct: 435 AARQASARGPGGAPAPAPAP-AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD 493
Query: 546 ELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPE 605
+ P + P + P P P P P
Sbjct: 494 DDPPPWEELPPEF---ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPA 550
Query: 606 PELLLPPKPEPEILLPPKPEPEL 628
P +P P L
Sbjct: 551 PRAAAATEPVVAPRPPRASASGL 573
Score = 30.2 bits (68), Expect = 8.1
Identities = 31/226 (13%), Positives = 42/226 (18%), Gaps = 35/226 (15%)
Query: 318 PTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQ 377
T + P P P P P P + P P
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPA----PAAPPAAPAAAPAAAAAARAV-AAAPARRSPA 429
Query: 378 LPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVP 437
PE L + P P P P P
Sbjct: 430 -PEALAAARQASARGPGGAPA-----PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483
Query: 438 ELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPEL 497
P + P ++ P P P
Sbjct: 484 APAAAPAP-ADDDPPPW-------------------EELPPEFASPAPAQPDAAPAGWVA 523
Query: 498 LLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKP 543
P+P P L P + P E ++ P+P
Sbjct: 524 --ESIPDPATADPDDAFETLAPAPAAAP--APRAAAATEPVVAPRP 565
Score = 30.2 bits (68), Expect = 9.5
Identities = 32/205 (15%), Positives = 42/205 (20%), Gaps = 29/205 (14%)
Query: 291 PIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPE 350
P P P ++ P P PE L P
Sbjct: 388 AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAV-AAAPARRSPA-PEALAAARQASARGPG 445
Query: 351 PTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQ 410
P P P P + P P P D + P
Sbjct: 446 GAPA-----PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP--PP 498
Query: 411 LPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPV 470
E+P P P +P+ +P+P D E +
Sbjct: 499 WEELPPE-----FASPAPAQPD----AAPAGWVAESIPDPATADPDDAFETL-------- 541
Query: 471 LLDKKEPVLPPKPEPEILLPPKPEP 495
P P P P P
Sbjct: 542 ---APAPAAAPAPRAAAATEPVVAP 563
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 40.8 bits (96), Expect = 0.002
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 291 PIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPE 350
P+VP+P ++ P++ LP P ++ + P L+P T+ P P
Sbjct: 42 PLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAP----SLDPATVAPPNTPV 97
Query: 351 PTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKP 398
+P E P+P KP P+P Q E K + E
Sbjct: 98 EPEPAPVEPPKP-KPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144
Score = 40.4 bits (95), Expect = 0.003
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 549 LPPKP--EPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEP 606
L PKP E ++P + PP+ +E + + P P P +PEP
Sbjct: 43 LVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPP-NTPVEPEP 101
Query: 607 ELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESE 657
+ PPKP+P KP+P+ PKP+ ++ PP P+PE PKP E
Sbjct: 102 APVEPPKPKPV----EKPKPK----PKPQQKVEAPPAPKPE----PKPVVE 140
Score = 40.0 bits (94), Expect = 0.004
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 479 LPPKP--EPEI-LLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
L PKP E ++P + PP+ E + L P P P +PEP
Sbjct: 43 LVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNT-PVEPEP 101
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLP-PKPKPKLLLPPKPESELLLPPK 583
+ PPKPKP PKP+P++ + P PKP PKP E P
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPKP----EPKPVVEEKAAPT 146
Score = 39.6 bits (93), Expect = 0.005
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 518 LLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESE 577
++P ++ PP+ E + L P P + P+P P PKP +
Sbjct: 55 MMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEK 114
Query: 578 LLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPK 613
PKP+ ++ PP P+PE PKP E P
Sbjct: 115 PKPKPKPQQKVEAPPAPKPE----PKPVVEEKAAPT 146
Score = 39.2 bits (92), Expect = 0.006
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 529 LPPKP----EPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKP 584
L PKP EP+++ P + PP+ E + P L P + P +P
Sbjct: 43 LVPKPGDRDEPDMM-PAATQALPTQPPEGAAEAVRAGDAAAPSLD--PATVAPPNTPVEP 99
Query: 585 EPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPK 643
EP + PPKP+P KP+P+ PKP+ ++ PP P+PE PKP E P
Sbjct: 100 EPAPVEPPKPKPV----EKPKPK----PKPQQKVEAPPAPKPE----PKPVVEEKAAPT 146
Score = 38.4 bits (90), Expect = 0.014
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 323 LPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVL 382
+P VP+P P+++ T LP P PE + + P+ L
Sbjct: 41 IPLVPKPGDRDEPDMMPAATQALPTQP-------PEG-AAEAVRAGDAAAPS-------L 85
Query: 383 EPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTK 441
+P + P P +P E P+ KP P+P Q E P KPE V E
Sbjct: 86 DPATVAPPNTPVEPEPAPVEPPK-PKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143
Score = 36.9 bits (86), Expect = 0.042
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 411 LPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPV 470
+P VP+P P++ LP P + + P + +P
Sbjct: 41 IPLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSL------------DPA 88
Query: 471 LLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPE 526
+ P P +PEP + PPKP+P PKP+P+ + PK P E +
Sbjct: 89 TV--APPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEK 142
Score = 35.4 bits (82), Expect = 0.12
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 580 LPPKP----EPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPK-PEPELLLPPKP 634
L PKP EP+++ P + PP+ E + L P P + P+P
Sbjct: 43 LVPKPGDRDEPDMM-PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEP 101
Query: 635 EPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPK 683
P PKP PKP+ + ++ P PKP E P
Sbjct: 102 APVEPPKPKPVE----KPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
Score = 34.2 bits (79), Expect = 0.25
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 610 LPPKP--EPEI-LLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEP 666
L PKP E ++P + PP+ E + L P P++PEP
Sbjct: 43 LVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNT-PVEPEP 101
Query: 667 EILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPV 711
+ PPKP+P PKP+P+ + P K ++ +K P
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
Score = 30.0 bits (68), Expect = 6.3
Identities = 18/78 (23%), Positives = 23/78 (29%), Gaps = 14/78 (17%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQL 345
P + V P PE P+ V +P P+P Q E
Sbjct: 83 PSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPK-------PKPKPQQKVEAP------- 128
Query: 346 PEDPEPTKPQLPEDPEPT 363
P KP + E PT
Sbjct: 129 PAPKPEPKPVVEEKAAPT 146
Score = 30.0 bits (68), Expect = 6.6
Identities = 31/146 (21%), Positives = 43/146 (29%), Gaps = 40/146 (27%)
Query: 367 LPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVP 426
+P VP+P P+++ LP P PE + + P+ P
Sbjct: 41 IPLVPKPGDRDEPDMMPAATQALPTQP-------PEG-AAEAVRAGDAAAPSLDPATVAP 92
Query: 427 EPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPE 486
T E P EP KP+ PV PKP+P+
Sbjct: 93 PNTPVEPE----------PAPVEPPKPK----------------------PVEKPKPKPK 120
Query: 487 ILLPPKPEPELLLPPKPEPELLLPPK 512
+ P PKP E P
Sbjct: 121 PQQKVEAPPAPKPEPKPVVEEKAAPT 146
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 41.7 bits (98), Expect = 0.002
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 11/136 (8%)
Query: 328 EPTKPQLPEVLEPTTLQLP---EDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEP 384
P + P +P P P+ Q +P+ PQ P T P +
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV---- 429
Query: 385 TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQL 444
P P P Q E + ++ + T + E E +
Sbjct: 430 ----DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNI 485
Query: 445 PEVPEPTKPQILDKKE 460
E P T+ +I +++
Sbjct: 486 KEAPTGTQKEIFTEED 501
Score = 34.4 bits (79), Expect = 0.40
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 8/123 (6%)
Query: 317 EPTKSQLPEVPEPTKPQLPEVLEPTTLQLPED---PEPTKPQLPEDPEPTKPQLPEVPEP 373
P + P +P P + + +P+ PQ P T P + P
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPA 433
Query: 374 TKPQLPEVLEPTKLQLPEDPEPTKPQL----PEDPETTKPQLPEVPEPTKLQLPEVPEPT 429
P P P ++ + E K + P T +P + + T + E P T
Sbjct: 434 AVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG-NIKEAPTGT 492
Query: 430 KPE 432
+ E
Sbjct: 493 QKE 495
>gnl|CDD|234450 TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein,
SusC/RagA family. This model describes a distinctive
clade among the TonB-linked outer membrane proteins
(OMP). Members of this family are restricted to the
Bacteriodetes lineage (except for Gemmatimonas aurantiaca
T-27 from the novel phylum Gemmatimonadetes) and occur in
high copy numbers, with over 100 members from Bacteroides
thetaiotaomicron VPI-5482 alone. Published descriptions
of members of this family are available for RagA from
Porphyromonas gingivalis, SusC from Bacteroides
thetaiotaomicron, and OmpW from Bacteroides caccae.
Members form pairs with members of the SusD/RagB family
(pfam07980). Transporter complexes including these outer
membrane proteins are likely to import large degradation
products of proteins (e.g. RagA) or carbohydrates (e.g.
SusC) as nutrients, rather than siderophores [Transport
and binding proteins, Unknown substrate].
Length = 982
Score = 41.0 bits (97), Expect = 0.004
Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 53/309 (17%)
Query: 961 PPVLNPPNSELVYKDKYTGVGGYFGAV--PEIGQNYYFHQNQSQ--NYYYHQNLSQNYYY 1016
P +LN +Y + G + E + Y + N + + + +
Sbjct: 228 PEMLNAYEYAELYNEARLNRGLSPPDLYTDEEIEAYRNGLDPDLYPNTDWQDEIFKRTAF 287
Query: 1017 HQ--NLSL-------KYYCRRNLSQNYYCHQNQS---PNNYY--YHLNLSQNY----YFH 1058
+Q NLS+ +YY +S YY N+ N+ Y Y+ + +
Sbjct: 288 NQRHNLSVSGGTEKARYY----VSLGYY---NEEGILKNSDYKRYNFRANIDAKLTKTLK 340
Query: 1059 QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYH 1118
+ + + + + + Y S YY +
Sbjct: 341 LSLNVSGSLSKYNNPGGST--SNIWNALMLFPRGTPYSTPPYYSDGYYPAYGSGNTSLQN 398
Query: 1119 --------QNQSQKYYYHQNLSQNYYYHQNLSQ----NYYCHQNQSQNYYYHQNQSQKYY 1166
N++++ + N S + L +Y +++ YY YY
Sbjct: 399 PYALLNRGYNENERNRLNANASLEQKITKGLKLKGTFSYDYSNYKNEKYYP----KPYYY 454
Query: 1167 YHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNY 1226
+ N YY ++ S++ Y+ + NY N++ ++++ Y +N S +Y
Sbjct: 455 NATGGANNGYYSESNSRSRNYYLEATLNY----NRTFGK--HNVSALLGYEQQENKSSSY 508
Query: 1227 YYHQNSFTS 1235
+ +
Sbjct: 509 GGLLDDLPN 517
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 40.8 bits (95), Expect = 0.004
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 390 PEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
P+DP+ T P+DP+ T P+ P+ T P+ P+ T P+ P+ T P P
Sbjct: 253 PQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTADNGPQDPDNTDDNGPHDPL 312
Query: 450 PTKP 453
P P
Sbjct: 313 PHNP 316
Score = 38.8 bits (90), Expect = 0.015
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P+DP+ T P+DP+ T P+ P+ T P+ + T P+DP+ T P DP
Sbjct: 253 PQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTADNGPQDPDNTDDNGPHDPL 312
Query: 406 TTKP 409
P
Sbjct: 313 PHNP 316
Score = 38.5 bits (89), Expect = 0.018
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
Query: 277 NEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPE 336
+++L PG P P+ T P+ P+ T P+ P+ T P+ P+ T P+
Sbjct: 239 SQNLGAPGGGPDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTADNGPQ 298
Query: 337 VLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPE--------PT-------KPQLPEV 381
+ T P DP P P + P+L E E P+ P LP +
Sbjct: 299 DPDNTDDNGPHDPLPHNPSDSAGNDGGPPKLTEEVENKGGDRGPPSMTDGGGGDPHLPTL 358
Query: 382 LEPTKLQLPEDPEPTKP 398
L T +D +P P
Sbjct: 359 LLGTSGSGGDDDDPHGP 375
Score = 38.1 bits (88), Expect = 0.025
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P+DP+ T P+DP+ T P+ P+ T P+ + T P DP P P +
Sbjct: 264 PQDPDNTDDNGPQDPDNTDDNGPQDPDNTADNGPQDPDNTDDNGPHDPLPHNPSDSAGND 323
Query: 406 TTKPQLPEVPE 416
P+L E E
Sbjct: 324 GGPPKLTEEVE 334
Score = 36.2 bits (83), Expect = 0.10
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 368 PEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPE 427
P+ P+ T P+ + T P+DP+ T P+DP+ T P+ P+ T P P
Sbjct: 253 PQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTADNGPQDPDNTDDNGPHDPL 312
Query: 428 PTKP 431
P P
Sbjct: 313 PHNP 316
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 40.8 bits (95), Expect = 0.004
Identities = 71/248 (28%), Positives = 105/248 (42%), Gaps = 41/248 (16%)
Query: 299 QELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPE 358
+E E E KP + E K P P K P + PT + PE P+ P+ P+
Sbjct: 538 KESDEPKEGGKPGETKEGEVGKK-----PGPAKEHKPSKI-PTLSKKPEFPK--DPKHPK 589
Query: 359 DPE-PTKPQLPEVPE-PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPE 416
DPE P KP+ P + PT+P+ P++ E + P P+ PE P P+ P P
Sbjct: 590 DPEEPKKPKRPRSAQRPTRPKSPKLPELLDI-------PKSPKRPESP--KSPKRP--PP 638
Query: 417 PTKLQLPEVPEPTKPELPEVPELTKT-QLPEVPE-PTKPQILDKKEPVLLDK-------K 467
P + P+ PE PE P++ K+ + P+ P+ P P+ +K LD K
Sbjct: 639 PQR--------PSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETK 690
Query: 468 EPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKP-EPELLLPPKLEPKLLLPPKSEPE 526
V+LD+ + + PE P P L P P + E P +P + E
Sbjct: 691 TTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPD--AEQPDDIE 748
Query: 527 LLLPPKPE 534
PP+ E
Sbjct: 749 FFTPPEEE 756
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 40.6 bits (95), Expect = 0.005
Identities = 55/216 (25%), Positives = 69/216 (31%), Gaps = 26/216 (12%)
Query: 371 PEPTKPQLPEVLEPTK-------LQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLP 423
P P+K P PTK L PE P+ KPQ P+ PE K + L
Sbjct: 135 PSPSKTMDPRRWSPTKATWLESALNKPESPKH-KPQPPQQPEWKKDLSRLRQSRASVDL- 192
Query: 424 EVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKP 483
K P T P+K I D L ++ KP
Sbjct: 193 GRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPD-------------LPSSRDS-EKTKP 238
Query: 484 EPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKP 543
E + E PKP L + + + E + E E K
Sbjct: 239 EKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKR 298
Query: 544 KPELLLP-PKPEPEKLLLPPKPKPK--LLLPPKPES 576
P LL P PK E K L P P+ L PKP+S
Sbjct: 299 SPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQS 334
Score = 39.4 bits (92), Expect = 0.009
Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 2/148 (1%)
Query: 279 DLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVL 338
DL + + TP+ T +K +P++P S+ + +P +
Sbjct: 191 DLGRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDT 250
Query: 339 EPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTK- 397
E ++ P + K P T + + PE + + E + P P
Sbjct: 251 EKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAE 310
Query: 398 PQLPEDPETTKPQLPEVPEPTKLQLPEV 425
P P+ P P P K Q P V
Sbjct: 311 SPKPLASPGKSPRDPLSPRP-KPQSPPV 337
Score = 36.4 bits (84), Expect = 0.090
Identities = 35/167 (20%), Positives = 51/167 (30%), Gaps = 21/167 (12%)
Query: 302 PEVPETTKPQLPEVPEPTK----------SQLPEVPEPTKPQLPEVLEPTTLQLPEDPEP 351
PE P+ KPQ P+ PE K S K P L T P
Sbjct: 161 PESPKH-KPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPPPGSHSKSP 219
Query: 352 TKPQLPE-----DPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPET 406
+K +P+ D E TKP+ P+ + E + P + K P
Sbjct: 220 SKSGIPDLPSSRDSEKTKPEKPQQETSSMDT-----EKSSAPKPRETLDPKSPEKAPPID 274
Query: 407 TKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKP 453
T + + PE + + E + P + P K
Sbjct: 275 TTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKS 321
Score = 32.1 bits (73), Expect = 2.1
Identities = 33/124 (26%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 510 PPKLEPKLLLPPKSEPELLLPPKPEPELLLP-----PKPKPELLLPPKPEPEKLLLPPKP 564
P LP + E P KP+ E PKP L PK + +
Sbjct: 218 SPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTE 277
Query: 565 -KPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLP-P 622
+ K ESE K P L+ P PKP L P K + L P P
Sbjct: 278 EELKSPEASPKESEEASARKRSPSLLSPSPKAE----SPKP---LASPGKSPRDPLSPRP 330
Query: 623 KPEP 626
KP+
Sbjct: 331 KPQS 334
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 40.4 bits (95), Expect = 0.005
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 337 VLEP--TTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE-----VLEPTKLQL 389
VL P T L P P +P P P PE E VLE + L
Sbjct: 250 VLAPRATRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAAL 309
Query: 390 PED 392
P D
Sbjct: 310 PPD 312
Score = 33.8 bits (78), Expect = 0.64
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 568 LLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPE 627
L+L P+ LP P+P +P P PP P + PP+ E E E
Sbjct: 249 LVLAPRA---TRLPAPPQPP---EEEPPP----PPPPPEDDDDPPEDEEEQDDAEDRALE 298
Score = 33.8 bits (78), Expect = 0.67
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 577 ELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPP-KPE 635
L+L P+ +P P+P +P P PP P + PP+ E E +
Sbjct: 248 RLVLAPRA---TRLPAPPQPP---EEEPPP----PPPPPEDDDDPPEDEEEQDDAEDRAL 297
Query: 636 PEILL 640
EI+L
Sbjct: 298 EEIVL 302
Score = 33.1 bits (76), Expect = 1.2
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 607 ELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEP 666
L+L P+ LP P+P +P P PP P + PP+ E E
Sbjct: 248 RLVLAPRATR---LPAPPQPP---EEEPPP----PPPPPEDDDDPPEDEEEQDDAEDRAL 297
Query: 667 -EILL 670
EI+L
Sbjct: 298 EEIVL 302
Score = 32.7 bits (75), Expect = 1.3
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 587 ELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEP 646
L++ P+ +P P+P +P P PP P + PP+ E E
Sbjct: 248 RLVLAPRATR---LPAPPQPP---EEEPPP----PPPPPEDDDDPPEDEEEQDDAEDRAL 297
Query: 647 E 647
E
Sbjct: 298 E 298
Score = 31.9 bits (73), Expect = 2.6
Identities = 14/62 (22%), Positives = 16/62 (25%), Gaps = 20/62 (32%)
Query: 355 QLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEV 414
+LP P+P E P P P P PED E
Sbjct: 257 RLPAPPQPP----EEEPPP----------------PPPPPEDDDDPPEDEEEQDDAEDRA 296
Query: 415 PE 416
E
Sbjct: 297 LE 298
Score = 31.5 bits (72), Expect = 2.9
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 381 VLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEP 428
VL P +LP P+P + P P + PE + Q
Sbjct: 250 VLAPRATRLPAPPQPP-EEEPPPPPPPPEDDDDPPEDEEEQDDAEDRA 296
Score = 30.8 bits (70), Expect = 5.1
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPE 595
L+L P+ LP P+P +P P PP P + PP+ E E
Sbjct: 248 RLVLAPRA---TRLPAPPQPP----EEEPPP----PPPPPEDDDDPPEDEEEQDDAEDRA 296
Query: 596 PE 597
E
Sbjct: 297 LE 298
>gnl|CDD|114524 pfam05802, EspB, Enterobacterial EspB protein. EspB is a
type-III-secreted pore-forming protein of
enteropathogenic Escherichia coli (EPEC) which is
essential for EPEC pathogenesis. EspB is also found in
Citrobacter rodentium.
Length = 317
Score = 39.7 bits (92), Expect = 0.007
Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 19/180 (10%)
Query: 117 LNDNNKSVIKWFLE-------NVECLLDYLVQQ-KETANVNSADLVNNRENVVKPVERKD 168
L D + K LE V L DY +Q ++ + A V +N K +E K
Sbjct: 39 LTDGKVDISKLMLEIQKLLGKMVTTLQDYQQRQLAQSYQIQQA--VFESQN--KAIEEKK 94
Query: 169 GKETTEKETGKIAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENR 228
T G I ++ G+FA + + +++A++ SSK ++ ++ +
Sbjct: 95 AAATAALVGGAI----SSVLGILGSFAAINSATKGASDIAQKATSASSKAVNAASEVATK 150
Query: 229 --VDNNDGTI-ATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGE 285
V + A +EA ++ +AA + +++ S + E+ +
Sbjct: 151 ALVKATESVADAAEEASSTMQQAMATATKAASRTSGVADDVATSAQKASQVAEEAADAAQ 210
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 40.0 bits (93), Expect = 0.008
Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 23/172 (13%)
Query: 288 VQTPIVPEPTKQELPEVPETTKPQLPEVP-EPTKSQ--LPEVPEPTKPQLPEVLEPTTLQ 344
V + EP + V P P EP + V EV + +Q
Sbjct: 292 VDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQ 351
Query: 345 LPEDPEPTKPQLPEDPEP--TKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPE 402
+ + + P + E E + Q P P +V PE+P E
Sbjct: 352 VADRDGESTPAVEETSEADIEREQ-PGDLAGQAPAAHQVDAEAASAAPEEPAA---LASE 407
Query: 403 DPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
+ T+P++PE P +P+P KP+ V P +P +P
Sbjct: 408 AHDETEPEVPEKAAP-------IPDPAKPDELAVAG------PG-DDPAEPD 445
Score = 37.7 bits (87), Expect = 0.043
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 19/127 (14%)
Query: 253 RRAAKTRDKIKENIDPELGN-----LSDLNEDLKKP---GEPEVQTPIVPEPTKQELPEV 304
A + ++ E D E E +++ P + P
Sbjct: 328 DVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIERE-QPGDLAGQAPAA 386
Query: 305 PETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLP--EDPEP 362
+ PE + E + T+P++PE P P+P KP P
Sbjct: 387 HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAP-------IPDPAKPDELAVAGPGD 439
Query: 363 TKPQLPE 369
P P+
Sbjct: 440 D-PAEPD 445
Score = 33.0 bits (75), Expect = 1.0
Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 18/179 (10%)
Query: 310 PQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPE 369
P+ E P + V E + + E+ P P P P+
Sbjct: 276 PKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAE---A 332
Query: 370 VPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPE--DPETTKPQLPEVPEPTKLQLPEVPE 427
V EV + +Q+ + + P + E + + + Q P Q P +
Sbjct: 333 VKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQ----PGDLAGQAPAAHQ 388
Query: 428 PTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPE 486
PE E + T+P+ P +K P+ D +P P
Sbjct: 389 VDAEAASAAPEEPAALASEAHDETEPE-----VP---EKAAPI-PDPAKPDELAVAGPG 438
Score = 32.6 bits (74), Expect = 1.3
Identities = 27/153 (17%), Positives = 43/153 (28%), Gaps = 24/153 (15%)
Query: 201 ETNPTEVA-------ERTAPESSKRTDSKED--IENRVDNNDGTIATDEALKAIESQRRV 251
E P E+A ++ D E A ++ R
Sbjct: 297 EREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRD 356
Query: 252 KRRAAKTRDKIKENID-PELGNL---------SDLNEDLKKPGEPEVQTPIVPEPTKQEL 301
+ + +I+ + G+L D P EP + T+
Sbjct: 357 GESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETE--- 413
Query: 302 PEVPETTKPQL-PEVPEPTKSQLPEVPEPTKPQ 333
PEVPE P P P+ P +P +P
Sbjct: 414 PEVPEKAAPIPDPAKPDELAVAGPG-DDPAEPD 445
>gnl|CDD|145501 pfam02389, Cornifin, Cornifin (SPRR) family. SPRR genes (formerly
SPR) encode a novel class of polypeptides (small proline
rich proteins) that are strongly induced during
differentiation of human epidermal keratinocytes in
vitro and in vivo. The most characteristic feature of
the SPRR gene family resides in the structure of the
central segments of the encoded polypeptides that are
built up from tandemly repeated units of either eight
(SPRR1 and SPRR3) or nine (SPRR2) amino acids with the
general consensus XKXPEPXX where X is any amino acid.
Length = 153
Score = 38.1 bits (88), Expect = 0.009
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 280 LKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLE 339
+K+P +P Q P VP + +VP+ ++PE P TK P + +P +V E
Sbjct: 5 VKQPCQPPPQEPFVPITKEPCHTKVPQPGNTKIPE-PGNTKVPEPGCTKVPEPGCTKVPE 63
Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
P + ++PE P TK P + +P P+VPEP ++PE P+ PEP +
Sbjct: 64 PCSTKVPE-PGRTKVPEPCCTKVPEPGYPKVPEPGSTKVPE----PGPCHPKVPEPGHTK 118
Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPT 429
+PE P P+VPEP + ++PE T
Sbjct: 119 VPE------PGYPKVPEPCQTKVPEPCPST 142
Score = 36.1 bits (83), Expect = 0.040
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 285 EPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQ 344
+ +V+ P P P + P VP T +P +VP+P +++PE P +V EP +
Sbjct: 2 QHQVKQPCQPPPQE---PFVPITKEPCHTKVPQPGNTKIPE------PGNTKVPEPGCTK 52
Query: 345 LPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDP 404
+PE P+ P + +P +VPEP ++PE P PEP ++PE
Sbjct: 53 VPEPGCTKVPE-PCSTKVPEPGRTKVPEPCCTKVPEPGYPKV------PEPGSTKVPE-- 103
Query: 405 ETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKE 460
P P+VPEP ++PE P P+VPE +T++PE T L +++
Sbjct: 104 --PGPCHPKVPEPGHTKVPE------PGYPKVPEPCQTKVPEPCPSTVTPGLAQQK 151
Score = 32.7 bits (74), Expect = 0.59
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 365 PQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPE 424
PQ P VP +P +V +P ++PE P TK P + +P +VPEP ++PE
Sbjct: 13 PQEPFVPITKEPCHTKVPQPGNTKIPE-PGNTKVPEPGCTKVPEPGCTKVPEPCSTKVPE 71
Query: 425 VPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPE 484
PE P ++ + P+VPEP ++ + P EP EP P PE
Sbjct: 72 PGRTKVPE-PCCTKVPEPGYPKVPEPGSTKVPEPG-PCHPKVPEPGHTKVPEPGYPKVPE 129
Query: 485 PEILLPPKPEPELLLP 500
P P+P P + P
Sbjct: 130 PCQTKVPEPCPSTVTP 145
Score = 30.4 bits (68), Expect = 3.5
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 268 PELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVP 327
P+ GN K EP P TK P + +P +VPEP +++PE
Sbjct: 30 PQPGNTKIPEPGNTKVPEPGCTKVPEPGCTKVPEPCSTKVPEPGRTKVPEPCCTKVPE-- 87
Query: 328 EPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQ--LPEVPEPTKPQLPEVLEPT 385
P P+V EP + ++PE P P P++PE P+ P+VPEP + ++PE T
Sbjct: 88 ----PGYPKVPEPGSTKVPE-PGPCHPKVPEPGHTKVPEPGYPKVPEPCQTKVPEPCPST 142
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 38.6 bits (90), Expect = 0.012
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 359 DPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPE-PTKPQLPEDPETTKPQLPEVPEP 417
+ + + P E T + L+P E+ P P+ P ET KP V EP
Sbjct: 107 EKVLGEEE-PAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEP 165
Query: 418 TKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQI 455
VP P E+P + P VP+P+ +
Sbjct: 166 VDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVV 203
Score = 38.2 bits (89), Expect = 0.015
Identities = 28/113 (24%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 281 KKPGEPEVQTPIVPEPT------KQELPEVPETTKPQLPEVP---EPTKSQLPEVPEPTK 331
K GE E + P+V E P PE P E K V EP
Sbjct: 108 KVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVD 167
Query: 332 PQLPEVL---EPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEV 381
V P TL+LP P+P P +P+ P V ++ +
Sbjct: 168 SMAIAVPAIDTPVTLELPPAPQPPPPVVPQ------PSTMVVHRRSRIKRTRS 214
Score = 37.9 bits (88), Expect = 0.020
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
+P P+ P L P+P+ E++L+P P+ PP E + P P E +
Sbjct: 113 EEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPE-----PPSYEETIKPGPAPVEEPVD 167
Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKP 644
+ P L LPP P+P PP P+ + +
Sbjct: 168 SMAIAVPAIDTPV---TLELPPAPQP----PPPVVPQPSTMVVHRRSRIKRTRS 214
Score = 37.5 bits (87), Expect = 0.026
Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 8/113 (7%)
Query: 324 PEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLE 383
EP + LQ P+ + +P PEP P E KP V E
Sbjct: 110 LGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEP-----PSYEETIKPGPAPVEE 164
Query: 384 PTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEV 436
P P P E P +P P VP+P+ V ++ +
Sbjct: 165 PVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPST---MVVHRRSRIKRTRS 214
Score = 35.5 bits (82), Expect = 0.10
Identities = 23/105 (21%), Positives = 32/105 (30%), Gaps = 6/105 (5%)
Query: 332 PQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPE 391
L E + DP Q P+ + +P PEP P E K
Sbjct: 108 KVLGEEEPAPQEETVADP-IQALQPRPRPDVEEVLVPAAPEP-----PSYEETIKPGPAP 161
Query: 392 DPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEV 436
EP P P E+P + P VP+P+ +
Sbjct: 162 VEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRR 206
Score = 34.4 bits (79), Expect = 0.23
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 17/120 (14%)
Query: 567 KLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEP 626
KLL E E + + I +P P P E + P+P P E
Sbjct: 104 KLLEKVLGEEEPAPQEETVADPIQALQPRPR---PDVEEVLVPAAPEP-------PSYEE 153
Query: 627 ELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEP 686
+ P P E + P ++ + L L P P+ PP P+
Sbjct: 154 TIKPGPAPVEEPVDSMAIA-----VPAIDTPVTLELPPAPQP--PPPVVPQPSTMVVHRR 206
Score = 34.0 bits (78), Expect = 0.35
Identities = 20/108 (18%), Positives = 29/108 (26%), Gaps = 9/108 (8%)
Query: 398 PQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILD 457
L E+ + + P LQ P+ + +P PE P E T
Sbjct: 108 KVLGEEEPAPQEETVADP-IQALQPRPRPDVEEVLVPAAPE------PPSYEETIKPGPA 160
Query: 458 KKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEP 505
E + V L P P+ PP P+
Sbjct: 161 PVEEPVDSMAIAVPAIDTPVTLELPPAPQP--PPPVVPQPSTMVVHRR 206
Score = 31.7 bits (72), Expect = 2.0
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 512 KLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLP 571
LE L + E + + P E+L+P PEP KP P +
Sbjct: 105 LLEKVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEE 164
Query: 572 PKPESELLLPPKPEP-ELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKP 624
P + +P P L +PP P+P PP P+ + +
Sbjct: 165 PVDSMAIAVPAIDTPVTLELPPAPQP----PPPVVPQPSTMVVHRRSRIKRTRS 214
Score = 30.2 bits (68), Expect = 5.5
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 556 EKLLLPPKPKPKLLLPPKPESELLLPPKPEPE-LIIPPKPEPEILIPPKPEPELLLPPKP 614
EK+L +P P+ P L P+P+ E +++P PEP P E + P P
Sbjct: 107 EKVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEP-----PSYEETIKPGPAP 161
Query: 615 EPEILLPPKPEP-----ELLLPPKPEPEILLPPKPEPELLLPPKP 654
E + + L P P+ P P+P ++ +
Sbjct: 162 VEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRR 206
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 37.7 bits (88), Expect = 0.023
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 311 QLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEV 370
QL EVP Q P+VP T + + P+P P + T P P+
Sbjct: 101 QLSEVPY--NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPP----RQTTAPVQPQT 154
Query: 371 PEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETT 407
P P + Q P P++ + E
Sbjct: 155 PAPVRTQPAA---------PVTQAVEAPKVEAEKEKE 182
Score = 35.8 bits (83), Expect = 0.11
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 326 VPEPTKP------QLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVP--EPTKPQ 377
VP PT+P P L QL E + Q +PT QL EVP E T
Sbjct: 62 VPTPTEPSAGGEVNSPTQLTDEQRQLLEQMQADMRQ-----QPT--QLSEVPYNEQTPQV 114
Query: 378 LPEVLEPTKLQLPEDPEPTKPQ---LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELP 434
++ + + P T Q + +TT P P+ P P + Q P P E P
Sbjct: 115 PRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQ-PAAPVTQAVEAP 173
Query: 435 EVPELTKT 442
+V +
Sbjct: 174 KVEAEKEK 181
Score = 35.8 bits (83), Expect = 0.11
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 295 EPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKP 354
+PT +L EVP Q P+VP T + + P +P T + T P
Sbjct: 98 QPT--QLSEVPYNE--QTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPP----RQTTAP 149
Query: 355 QLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTK 386
P+ P P + Q P P + P+V +
Sbjct: 150 VQPQTPAPVRTQ-PAAPVTQAVEAPKVEAEKE 180
Score = 31.9 bits (73), Expect = 1.9
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 289 QTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPED 348
QTP VP T Q + + P P+P + T P P+ P Q
Sbjct: 110 QTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPP----RQTTAPVQPQTPAPVRTQPAAP 165
Query: 349 PEPTKPQLPEDPEPTKPQ 366
+ E K Q
Sbjct: 166 VTQAVEAPKVEAEKEKEQ 183
Score = 30.4 bits (69), Expect = 5.6
Identities = 32/129 (24%), Positives = 43/129 (33%), Gaps = 20/129 (15%)
Query: 370 VPEPTKP------QLPEVLEPTKLQLPEDPE------PTKPQLPEDPETTKPQLPEVPEP 417
VP PT+P P L + QL E + PT QL E P Q P+VP
Sbjct: 62 VPTPTEPSAGGEVNSPTQLTDEQRQLLEQMQADMRQQPT--QLSEVPYNE--QTPQVPRS 117
Query: 418 TKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEP 477
T + + P P+ + T P PV PV + P
Sbjct: 118 TVQIQQQAQQQQPPATTAQPQPVTPP----RQTTAPVQPQTPAPVRTQPAAPVTQAVEAP 173
Query: 478 VLPPKPEPE 486
+ + E E
Sbjct: 174 KVEAEKEKE 182
>gnl|CDD|225729 COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility
and secretion / Intracellular trafficking and secretion].
Length = 835
Score = 38.4 bits (90), Expect = 0.028
Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 25/140 (17%)
Query: 1107 YHQNQSQNYYYHQNQSQKYYYHQNLSQN--------YYY---HQNLSQNYYCHQNQSQNY 1155
++Q + Q QS + Y + Q Y Y + ++ +
Sbjct: 425 RSRSQLDDDDKQQGQSYRLLYSKQFQQTGTNFSLAGYRYSTRGYRTLSDALDSRDDDYSD 484
Query: 1156 YYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNY---YYH--- 1209
Y ++ + N+SQ+ + + Y + S Y++ + +N Y +
Sbjct: 485 YNDLQYRKRSRFSANISQS---LGSGYGSLYL--SGSYQDYWNASGRSRNLQLGYSNSFG 539
Query: 1210 ---LNLSQNYYYHQNLSQNY 1226
+LS + + +
Sbjct: 540 RISYSLSLSRSRSEYDGDSD 559
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 38.4 bits (90), Expect = 0.029
Identities = 50/250 (20%), Positives = 66/250 (26%), Gaps = 36/250 (14%)
Query: 330 TKPQLPEVLEPTTLQLPEDPE----PTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPT 385
T+P+L LE T L L P P P + T
Sbjct: 346 TQPRL--WLEVTLLGLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT 403
Query: 386 KLQLPEDPEPTKPQLPEDPET-TKPQLPEVPEPTKLQLPEVPEP--TKPELPEVPELTKT 442
P P P E E P P L L E+ + K ELP L
Sbjct: 404 PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQ 463
Query: 443 Q--------------------------LPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKE 476
Q P + E ++L + + L+ + + +
Sbjct: 464 QAELVSLDSNRAVIAVSPNWLGMVQSRKPLL-EQAFAKVLGRSIKLNLESQSGSASNTAK 522
Query: 477 PVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPE 536
PP+ P P P P+ P PP P P PP P PE
Sbjct: 523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPE 582
Query: 537 LLLPPKPKPE 546
P K
Sbjct: 583 EPTPSPTKDS 592
Score = 36.1 bits (84), Expect = 0.13
Identities = 42/243 (17%), Positives = 59/243 (24%), Gaps = 58/243 (23%)
Query: 360 PEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTK 419
P ++ P P P P +P+ P+ + T P + P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPP----PAPIQPSAPKTKQAATTPSPPPAKASPPIP 416
Query: 420 LQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEP-------------VLLDK 466
+ P L E+ + QIL K E V LD
Sbjct: 417 VPAEPTEPSPTPPANAANAPPSLNLEELWQ----QILAKLELPSTRMLLSQQAELVSLDS 472
Query: 467 KEPVL--------------------------------LDKKEPVLPPKPEPEILLPPKPE 494
V+ L+ + + PP+
Sbjct: 473 NRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPP--PPQKS 530
Query: 495 PELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPE 554
P P P P+ PP + P P PP P PE P P
Sbjct: 531 PPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPE---EPTPS 587
Query: 555 PEK 557
P K
Sbjct: 588 PTK 590
Score = 35.7 bits (83), Expect = 0.16
Identities = 18/79 (22%), Positives = 20/79 (25%)
Query: 569 LLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPEL 628
LLP SE+ P P P I P P P P P
Sbjct: 359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP 418
Query: 629 LLPPKPEPEILLPPKPEPE 647
P +P P P
Sbjct: 419 AEPTEPSPTPPANAANAPP 437
Score = 35.7 bits (83), Expect = 0.18
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 12/107 (11%)
Query: 284 GEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTL 343
+ P + P + P Q P P + +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA- 419
Query: 344 QLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLP 390
P P L E+ + ++L KL+LP
Sbjct: 420 --EPTEPSPTPPANAANAPPSLNLEELWQ-------QILA--KLELP 455
Score = 34.9 bits (81), Expect = 0.33
Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 1/80 (1%)
Query: 548 LLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPE 607
LLP E P P P + P P+ + P P P P
Sbjct: 359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTK-QAATTPSPPPAKASPPIPV 417
Query: 608 LLLPPKPEPEILLPPKPEPE 627
P +P P P
Sbjct: 418 PAEPTEPSPTPPANAANAPP 437
Score = 34.6 bits (80), Expect = 0.40
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 4/90 (4%)
Query: 314 EVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEP 373
E + S + P P + P L P P P P
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQP----TATAPPPTPPPPPPTATQASSNA 566
Query: 374 TKPQLPEVLEPTKLQLPEDPEPTKPQLPED 403
+ P + P PTK PE+
Sbjct: 567 PAQIPADSSPPPPIPEEPTPSPTKDSSPEE 596
Score = 34.2 bits (79), Expect = 0.53
Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 362 PTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQ 421
P PQ P P LP+ P P PT Q + P +
Sbjct: 524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQAS--SNAPAQIPADSSPPPPIP 581
Query: 422 LPEVPEPTKPELPE 435
P PTK PE
Sbjct: 582 EEPTPSPTKDSSPE 595
Score = 34.2 bits (79), Expect = 0.54
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 287 EVQTP-IVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQL 345
E Q+ P+ P +P+PT + P P P P + Q+
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570
Query: 346 PED-PEPTKPQLPEDPEPTKPQLPE 369
P D P P PTK PE
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSPE 595
Score = 32.6 bits (75), Expect = 1.5
Identities = 15/69 (21%), Positives = 22/69 (31%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
PP+ P P P P+ P P P P ++ P + + PP E
Sbjct: 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585
Query: 600 IPPKPEPEL 608
P +
Sbjct: 586 PSPTKDSSP 594
Score = 32.2 bits (74), Expect = 2.1
Identities = 19/94 (20%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 619 LLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPEL 678
LLP E+ P P P + P P P P P
Sbjct: 359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP 418
Query: 679 LLPPKPEPELLLPPKPETITTTKTLLLDKKEPVL 712
P +P P PP L + + +L
Sbjct: 419 AEPTEPSPT---PPANAANAPPSLNLEELWQQIL 449
Score = 31.9 bits (73), Expect = 2.9
Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 3/78 (3%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
K P P P P+P P P P P + P + +
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTAT---APPPTPPPPPPTATQASSNAPAQIPADSSP 576
Query: 641 PPKPEPELLLPPKPESEL 658
PP E P +S
Sbjct: 577 PPPIPEEPTPSPTKDSSP 594
Score = 31.5 bits (72), Expect = 3.1
Identities = 17/77 (22%), Positives = 18/77 (23%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
K P P P LP P P IP P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Query: 600 IPPKPEPELLLPPKPEP 616
IP +P P PE
Sbjct: 580 IPEEPTPSPTKDSSPEE 596
Score = 31.1 bits (71), Expect = 3.9
Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 384 PTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQ 443
P Q P P LP+ T P P P PT Q P +
Sbjct: 524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP--ADSSPPPPIP 581
Query: 444 LPEVPEPTKPQILD 457
P PTK +
Sbjct: 582 EEPTPSPTKDSSPE 595
Score = 31.1 bits (71), Expect = 4.1
Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 282 KPGEPEVQTPIVPEPTKQ--ELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLE 339
+ P P P T P P P + +
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576
Query: 340 PTTLQLPEDPEPTKPQLPED 359
P + P PTK PE+
Sbjct: 577 PPPIPEEPTPSPTKDSSPEE 596
Score = 30.7 bits (70), Expect = 5.7
Identities = 11/67 (16%), Positives = 17/67 (25%)
Query: 281 KKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
P P +P+ + + T P + P P P
Sbjct: 377 PTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAP 436
Query: 341 TTLQLPE 347
+L L E
Sbjct: 437 PSLNLEE 443
Score = 30.7 bits (70), Expect = 5.9
Identities = 15/79 (18%), Positives = 18/79 (22%)
Query: 579 LLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEI 638
LLP E+ P P P + P P P P P
Sbjct: 359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP 418
Query: 639 LLPPKPEPELLLPPKPESE 657
P +P P
Sbjct: 419 AEPTEPSPTPPANAANAPP 437
Score = 30.7 bits (70), Expect = 6.1
Identities = 20/84 (23%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 561 PPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILL 620
P PP+ P P P+ P PP P P
Sbjct: 519 NTAKTPP---PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575
Query: 621 PPKPEPELLLPPKPEPEILLPPKP 644
PP P PE P P P P+
Sbjct: 576 PPPPIPE---EPTPSPTKDSSPEE 596
Score = 30.7 bits (70), Expect = 6.1
Identities = 18/84 (21%), Positives = 19/84 (22%), Gaps = 5/84 (5%)
Query: 586 PELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPE 645
P I P P P PP P K P P P P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT---TPSPPPAK--ASPPI 415
Query: 646 PELLLPPKPESELLLPLKPEPEIL 669
P P +P P L
Sbjct: 416 PVPAEPTEPSPTPPANAANAPPSL 439
Score = 30.7 bits (70), Expect = 6.6
Identities = 16/78 (20%), Positives = 19/78 (24%), Gaps = 3/78 (3%)
Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL 579
K+ P P P P+P P P P +P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP-- 577
Query: 580 LPPKPEPELIIPPKPEPE 597
PP PE P K
Sbjct: 578 -PPIPEEPTPSPTKDSSP 594
Score = 29.9 bits (68), Expect = 9.6
Identities = 14/78 (17%), Positives = 19/78 (24%), Gaps = 3/78 (3%)
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
K P P P+P P P P P + P + +
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTAT---APPPTPPPPPPTATQASSNAPAQIPADSSP 576
Query: 631 PPKPEPEILLPPKPEPEL 648
PP E P +
Sbjct: 577 PPPIPEEPTPSPTKDSSP 594
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 38.3 bits (89), Expect = 0.029
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 337 VLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE--VLEPTKLQLPED 392
L Q P P P +P PE+ Q Q+PE + + + LP++
Sbjct: 265 RLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDN 322
Score = 36.7 bits (85), Expect = 0.082
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 337 VLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPT 396
VL P +LPE P+ P P P P PE + Q D
Sbjct: 258 VLLPRATRLPEPE-------PQPPPPPPPPEPPEPEEEPDEPD--------QTDPDDGEE 302
Query: 397 KPQLPED 403
Q+PE+
Sbjct: 303 TDQIPEE 309
Score = 34.8 bits (80), Expect = 0.31
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 577 ELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK--- 633
EL+L P+ P+P P PP PEP EP+ P E +P +
Sbjct: 256 ELVLLPRATRLPEPEPQPPPP---PPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMF 312
Query: 634 PEPEILLPPK 643
E LP
Sbjct: 313 DAVEADLPDN 322
Score = 34.8 bits (80), Expect = 0.37
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPE 595
EL+L P+ L P+P+P PP P P P PE E EP+ P E
Sbjct: 256 ELVLLPRATR--LPEPEPQP-----PPPPPP----PEPPEPE---EEPDEPDQTDPDDGE 301
Query: 596 PEILIPP 602
IP
Sbjct: 302 ETDQIPE 308
Score = 34.0 bits (78), Expect = 0.59
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 318 PTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPE 369
P ++LPE PEP P P EP PE+ Q D Q+PE
Sbjct: 261 PRATRLPE-PEPQPPPPPPPPEPPE---PEEEPDEPDQTDPDDGEETDQIPE 308
Score = 33.6 bits (77), Expect = 0.66
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 557 KLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPK--- 613
+L+L P+ LP PP PEP EP+ P E +P +
Sbjct: 256 ELVLLPR---ATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMF 312
Query: 614 PEPEILLPPK 623
E LP
Sbjct: 313 DAVEADLPDN 322
Score = 33.6 bits (77), Expect = 0.77
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 597 EILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 652
E+++ P+ P+P P PP PEP EP+ P E +P
Sbjct: 256 ELVLLPRATRLPEPEPQPPPP---PPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 33.6 bits (77), Expect = 0.80
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 353 KPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLP 412
P+ PEP PQ P P P +P PE E EP Q D Q+P
Sbjct: 260 LPRATRLPEPE-PQPPPPPPPPEPPEPE---------EEPDEP--DQTDPDDGEETDQIP 307
Query: 413 E 413
E
Sbjct: 308 E 308
Score = 32.9 bits (75), Expect = 1.2
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 307 TTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPED 359
P+ +PEP P P P +P PE Q D Q+PE+
Sbjct: 258 VLLPRATRLPEPEPQP-PPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 32.9 bits (75), Expect = 1.2
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 607 ELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLP 661
EL+L P+ P+P P PP PEP EP+ P E +P
Sbjct: 256 ELVLLPRATRLPEPEPQPPPP---PPPPEPPEPEEEPDEPDQTDPDDGEETDQIP 307
Score = 31.7 bits (72), Expect = 2.7
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 18/79 (22%)
Query: 512 KLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLP 571
KL +L+L P++ L P+P+P PP P P P PEPE +P P
Sbjct: 252 KLAVELVLLPRATR--LPEPEPQP----PPPPPP----PEPPEPE----EEPDEPDQTDP 297
Query: 572 PKPESELLLPPKPEPELII 590
E +P EL+
Sbjct: 298 DDGEETDQIP----EELMF 312
Score = 31.7 bits (72), Expect = 3.1
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 381 VLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPE 438
VL P +LPE P+ P P P PE + + E ++PE
Sbjct: 258 VLLPRATRLPEPE-------PQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 30.5 bits (69), Expect = 7.0
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 395 PTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
P +LPE PQ P P P + P PE E + + ++PE
Sbjct: 261 PRATRLPEPE----PQPPPPPPPPE---PPEPEEEPDEPDQTDPDDGEETDQIPE 308
Score = 30.2 bits (68), Expect = 8.6
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 627 ELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEP 686
EL+L P+ P+P P PP PE P +PE E EP+ P E
Sbjct: 256 ELVLLPRATRLPEPEPQPPPP---PPPPE-----PPEPEEE-----PDEPDQTDPDDGEE 302
Query: 687 ELLLPP 692
+P
Sbjct: 303 TDQIPE 308
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 37.7 bits (87), Expect = 0.045
Identities = 48/218 (22%), Positives = 74/218 (33%), Gaps = 15/218 (6%)
Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
PT P K D PE P P+ Q +EP L E Q
Sbjct: 422 PTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSD-QPSVPVEPAHLTPVEHTTVILHQ 480
Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKK 459
P+ P T + P P++ + + + T + V +P KP +
Sbjct: 481 PPQSPPTVAIKPA--PPPSRRRRGACVVYDDDIIEVIDVETTEEEESVTQPAKP----HR 534
Query: 460 EPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLL 519
+ ++ +++ PPK P PPK P ++ PP P ++ P P+ +
Sbjct: 535 KVQDGFQRSG---RRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMA 591
Query: 520 PPKSEPELLL-----PPKPEPELLLPPKPKPELLLPPK 552
PP + P PP P PP P + P
Sbjct: 592 PPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSV 629
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 37.0 bits (86), Expect = 0.046
Identities = 33/153 (21%), Positives = 42/153 (27%), Gaps = 8/153 (5%)
Query: 252 KRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQ 311
K +AA+ +KE DP G D ED P P
Sbjct: 132 KWKAARIHKALKEGEDPNPGPPLD-EEDEDADVATTNSDNSFPGEDADPASASPSDPPSS 190
Query: 312 LPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVP 371
P VP S + P+ LP P++ Q + P P+ P P P
Sbjct: 191 SPGVP-SFPSPPEDPSSPSDSSLPPA--PSSFQ----SDTPPPSPESPTNPSPPPGPAAP 243
Query: 372 EPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDP 404
P Q L K P P
Sbjct: 244 PPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276
Score = 35.8 bits (83), Expect = 0.10
Identities = 26/157 (16%), Positives = 36/157 (22%), Gaps = 15/157 (9%)
Query: 287 EVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLP 346
E + P P +E + T P P P
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSP----------G 193
Query: 347 EDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPET 406
P+ P+ P P LP P + P P P P P
Sbjct: 194 VPSFPSPPEDPSSPSD--SSLPPAPSSFQSDTPPPSPE---SPTNPSPPPGPAAPPPPPV 248
Query: 407 TKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQ 443
+ +PT P P + + K Q
Sbjct: 249 QQVPPLSTAKPTPPSASATPAPIGGITLDDDAIAKAQ 285
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 37.5 bits (87), Expect = 0.048
Identities = 27/116 (23%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 510 PPKLEPKLLLPPKSEP-ELLLPPKPEPELLL-------PPKPKPELLLPPKPEPEKLLLP 561
PP + L P + E P P P + P + + P L P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 562 PKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPE 617
P+P P LPP P+ P P LI P PP E
Sbjct: 696 QAPRP----GGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747
Score = 34.0 bits (78), Expect = 0.63
Identities = 28/116 (24%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPP----KPESELLLPP-KPEPE---LIIP 591
PP K L P + P P P + P +P P +P L P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 592 PKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPE 647
P P P LPP P+ P P L+ P PP E
Sbjct: 696 QAPRP----GGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747
Score = 33.6 bits (77), Expect = 0.88
Identities = 26/119 (21%), Positives = 32/119 (26%), Gaps = 12/119 (10%)
Query: 564 PKPKLLLPPKPE----SELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEIL 619
P P+P+ E P P P P P + + P L
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPV---PVGMPAHTARPSRVARGDPVRPTAHHAAL 692
Query: 620 -LPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPE 677
P P P P LPP P+ P P L+ P PP E
Sbjct: 693 RAPQAPRP----GGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747
Score = 32.1 bits (73), Expect = 2.5
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 535 PELLLPPKPKPELL------LPPKPEPEKLLL------PPKPKPKLLLPPKPESELLLPP 582
P + P+P+ P P P + + P + + P L P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 583 KPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPE 637
+ P P +PP P+ P P L+ P PP E
Sbjct: 696 QA-PRP--GGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747
Score = 31.3 bits (71), Expect = 4.5
Identities = 17/84 (20%), Positives = 21/84 (25%), Gaps = 6/84 (7%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQL 345
P P + + P+ P P P P LP P
Sbjct: 674 PSRVARGDP------VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGS 727
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPE 369
PT P PE P + E
Sbjct: 728 SLIASPTAPPEPEPPGAEQADGAE 751
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 37.6 bits (87), Expect = 0.050
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 380 EVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPT 429
EV+E T E P+ T + P T PE T EPT
Sbjct: 706 EVVEET-----ERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPT 750
Score = 36.8 bits (85), Expect = 0.079
Identities = 47/238 (19%), Positives = 76/238 (31%), Gaps = 59/238 (24%)
Query: 108 TPNLDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERK 167
LD ++ + + + L N +D +TA S DL+ V +
Sbjct: 574 IGYLDTYAGGSNTGEQIREQILSNT---VD------DTA---SDDLI-----VTETFRLA 616
Query: 168 DGKETTEKETGKIAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIEN 227
DG T E + GT E G+ + D T E+ +S +S ++
Sbjct: 617 DGLTTIESVYNPVEAGGTL--EVAGSTNRKPDDNTITVELLNEDD--TSVTLESTDEW-- 670
Query: 228 RVDNNDGTIATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLS---DLNEDLKKPG 284
N+DG + + L +E+ GN + D ++ +
Sbjct: 671 ---NSDGQWSVEVDLSDVET-----------------------GNYTVEADDGDNTDRVN 704
Query: 285 EPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT 342
V+ P+ T E P T PE T EPT+ E TT
Sbjct: 705 VEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTE-------ETTT 755
Score = 35.2 bits (81), Expect = 0.28
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 21/71 (29%)
Query: 336 EVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEP 395
EV+E T E P+ T EDP T PE T +P
Sbjct: 706 EVVEET-----ERPDTTTS---EDPTTTTTPTTTGPEETTET-------------AEPTT 744
Query: 396 TKPQLPEDPET 406
T + E+ T
Sbjct: 745 TTEEPTEETTT 755
Score = 32.5 bits (74), Expect = 1.6
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 8/53 (15%)
Query: 399 QLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPT 451
++ E+ E E P T PE T T EPT
Sbjct: 706 EVVEETERPDTTTSEDPTTTTTPTTTGPEETTE--------TAEPTTTTEEPT 750
Score = 32.5 bits (74), Expect = 1.7
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 325 EVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPT 363
E P+ T + P T PE+ T EPT
Sbjct: 712 ERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPT 750
Score = 31.8 bits (72), Expect = 2.8
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 11/50 (22%)
Query: 369 EVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPT 418
E P+ T + P PT PE+ T EPT
Sbjct: 712 ERPDTTTSEDPT----------TTTTPT-TTGPEETTETAEPTTTTEEPT 750
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 36.9 bits (85), Expect = 0.073
Identities = 40/199 (20%), Positives = 58/199 (29%), Gaps = 29/199 (14%)
Query: 390 PEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
+P P P+ PE P P PT E P P P+ E T+ ++PE+ E
Sbjct: 83 GSEPAPAAPEPEAAPEPEAPA----PAPTPAA--EAPAPAAPQAGGSGEATEVKMPELGE 136
Query: 450 PTKPQILDKKEPVLLDK---KEPVLLDKKEPVLPPKPEP------EILLPPKPEPEL--L 498
+ + D EP+L + V P P EI P E+ +
Sbjct: 137 SVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGTV 196
Query: 499 LPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKL 558
L + E + P SE +P P+ P
Sbjct: 197 LAIIGDANAAPAEPAEEEA--PAPSEA----GSEPAPDPAARAPHAAP---DPPAPAPA- 246
Query: 559 LLPPKPKPKLLLPPKPESE 577
P K P +
Sbjct: 247 --PAKTAAPAAAAPVSSGD 263
Score = 33.8 bits (77), Expect = 0.57
Identities = 42/181 (23%), Positives = 53/181 (29%), Gaps = 19/181 (10%)
Query: 285 EPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQ 344
P PEP PE P E P P Q E T+ ++PE+ E T
Sbjct: 82 AGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELGESVTEG 141
Query: 345 LPEDPEPTKPQLPEDPEP-----TKPQLPEVPEPTKPQLPEVLEP--------TKLQLPE 391
E EP T E+P P L E+ P T L +
Sbjct: 142 TVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGTVLAIIG 201
Query: 392 D--PEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
D P +P E P ++ P+P P P KT P
Sbjct: 202 DANAAPAEPAEEEAPAPSEAGSEPAPDPA----ARAPHAAPDPPAPAPAPAKTAAPAAAA 257
Query: 450 P 450
P
Sbjct: 258 P 258
Score = 32.3 bits (73), Expect = 1.7
Identities = 10/52 (19%), Positives = 11/52 (21%), Gaps = 1/52 (1%)
Query: 582 PKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK 633
E E P + E P P P P K P
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHA-APDPPAPAPAPAKTAAPAAAAPV 259
Score = 30.8 bits (69), Expect = 5.2
Identities = 11/60 (18%), Positives = 12/60 (20%), Gaps = 7/60 (11%)
Query: 564 PKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPK 623
P SE P P+P P P P K P
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDP---PAPAPA----PAKTAAPAAAAPV 259
Score = 30.8 bits (69), Expect = 5.5
Identities = 10/62 (16%), Positives = 13/62 (20%), Gaps = 9/62 (14%)
Query: 582 PKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLP 641
P E + +P P+ P P P P K
Sbjct: 207 PAEPAE----EEAPAPSEAGSEPAPD----PAARAP-HAAPDPPAPAPAPAKTAAPAAAA 257
Query: 642 PK 643
P
Sbjct: 258 PV 259
>gnl|CDD|234706 PRK00269, zipA, cell division protein ZipA; Reviewed.
Length = 293
Score = 36.3 bits (84), Expect = 0.079
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 10/135 (7%)
Query: 253 RRAAKTRDKIKENIDPELGNLSDLNEDLKKP---GEPEV-QTPIVPEPTKQELPEVPETT 308
RR + K+K +D NL D E+ G V T P+ + +LP + +
Sbjct: 26 RRMRGGKGKLKFRLDRSYSNLPD--EEEGSAELLGPARVLDTHKEPQLDEHDLPSM---S 80
Query: 309 KPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLP 368
+ ++ + ++PQ ++ P D +K + P
Sbjct: 81 ARPRERRRDTKTAKQQKRGRGSEPQQGDLNLDLDEVEPALFSDRDDDFTPDKRKSKGREP 140
Query: 369 EVPEPTK-PQLPEVL 382
+ P + P + EVL
Sbjct: 141 RIEPPKELPPVEEVL 155
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 36.4 bits (84), Expect = 0.080
Identities = 29/156 (18%), Positives = 44/156 (28%), Gaps = 15/156 (9%)
Query: 249 RRVKRRAAKTRDK-IKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEV--- 304
R +KR +K D E D E + + P + P Q PE
Sbjct: 38 RPLKRMKSKRDDDPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASA 97
Query: 305 -PETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPT 363
+ PQ P++ +P P P + Q PE L P+P
Sbjct: 98 QIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPA----------PQPV 147
Query: 364 KPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
P+ T + ++ E K
Sbjct: 148 HSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRP 183
Score = 33.3 bits (76), Expect = 0.76
Identities = 28/146 (19%), Positives = 42/146 (28%), Gaps = 17/146 (11%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEV----PEPTKPQLPEVL 338
P + V E E P+ T+ P PE + PQ P++
Sbjct: 51 PYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQIS 110
Query: 339 EPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKP 398
+P P P + PE E +P LP+ + P+P
Sbjct: 111 DPPAHPQPTQPAL---DQEQPPE----------EARQPVLPQEAPAPQPVHSAAPQPAVQ 157
Query: 399 QLPEDPETTKPQLPEVPEPTKLQLPE 424
+ + Q EV EP
Sbjct: 158 TVQPAVPEQQVQPEEVVEPAPEVKRP 183
Score = 30.6 bits (69), Expect = 5.1
Identities = 19/117 (16%), Positives = 39/117 (33%)
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
++ + P+ P+ + P P+P + P P+ P + +
Sbjct: 71 EAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPE 130
Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPE 687
+ P P+P P+P + + P PE ++ EP + P +
Sbjct: 131 EARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKD 187
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 35.9 bits (83), Expect = 0.097
Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 570 LPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELL 629
L + + L P L P P+PEP P P P P+
Sbjct: 26 LHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK 85
Query: 630 LPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELL 689
PKPE + PKP+P+ PKP+ +KP+P+ PP +P
Sbjct: 86 EKPKPEKKP-KKPKPKPKPKPKPKPK------VKPQPKPKKPPSKTAAKAPAAPNQPARP 138
Query: 690 LPPK 693
Sbjct: 139 PSAA 142
Score = 34.0 bits (78), Expect = 0.34
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 282 KPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPT 341
E V +VP +V E + PEP + Q EP P P +P
Sbjct: 26 LHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK 85
Query: 342 T-LQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEV 381
+ + P+ KP+ P+P P+P KP
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKV-KPQPKPKKPPSKTA 125
Score = 34.0 bits (78), Expect = 0.40
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 546 ELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPE 605
EL+ +L + P PE + PKP E PP+P P
Sbjct: 35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQ----PKPPTEPETPPEPTPPKPKEKPKP 90
Query: 606 PELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESEL 658
+ PKP+P+ PKP+ P+P+P+ P +P
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKV----KPQPKPKKPPSKTAAKAPAAPNQPARPP 139
Score = 33.2 bits (76), Expect = 0.67
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 313 PEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPE 372
E P PE PE EP T P P+P + P+ + K P+
Sbjct: 49 LEAPTEEPQPEPEPPEEQPK---PPTEPETPPEPTPPKPKEK--PKPEKKPKKPKPKPKP 103
Query: 373 PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETT 407
KP+ +P + P P P P
Sbjct: 104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARP 138
Score = 32.8 bits (75), Expect = 0.93
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPT-KPQLPEDPETT 407
L E +P+ E KP P P P+P KP+ + P+
Sbjct: 42 FLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPP----EPTPPKPKEKPKPEKKPKKP 97
Query: 408 KPQLPEVPEPTKLQLPEVPEPTKPELPEVPE 438
KP+ P+P ++ P+P KP +
Sbjct: 98 KPKPKPKPKPKP-KVKPQPKPKKPPSKTAAK 127
Score = 32.5 bits (74), Expect = 1.2
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 492 KPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPP 551
E + + P LL K+ P+ EPE P P
Sbjct: 27 HQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKE 86
Query: 552 KPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKP 604
KP+PEK PKPKPK PKP+ + P+P+P+ P + P P
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPK----VKPQPKPK---KPPSKTAAKAPAAP 132
Score = 32.1 bits (73), Expect = 1.5
Identities = 22/136 (16%), Positives = 31/136 (22%)
Query: 370 VPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPT 429
V + + L P + L P PE P+ P PE P
Sbjct: 24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPK 83
Query: 430 KPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILL 489
E P+ + K P+ KP+ K +P P P
Sbjct: 84 PKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAAS 143
Query: 490 PPKPEPELLLPPKPEP 505
Sbjct: 144 ASGAATGPSASYLSGL 159
Score = 32.1 bits (73), Expect = 1.7
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 7/113 (6%)
Query: 342 TLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLP 401
ED + L E +P EP + Q EP P P
Sbjct: 24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQP----EPEPPEEQPKPPTEPETPPEP 79
Query: 402 EDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
P+ + P+ + K P+ KP+ P+V K + P K
Sbjct: 80 TPPKPKEK--PKPEKKPKKPKPKPKPKPKPK-PKVKPQPKPKKPPSKTAAKAP 129
Score = 30.9 bits (70), Expect = 3.5
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 914 EKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSPPEKPHHSPIPPPPPV 963
E + Q KP P + +P +P+ P+KP P P P P
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 30.1 bits (68), Expect = 6.6
Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 11/150 (7%)
Query: 311 QLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEV 370
E + V L PT PE P + P T P+ P
Sbjct: 26 LHQEDFVGIELVPLAVFLLAAKVLEA---PTEEPQPEPEPPEEQPKPPTEPETPPE-PTP 81
Query: 371 PEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTK 430
P+P + P+ + K P+ P+P P+ KP+ P K P +
Sbjct: 82 PKPKEK--PKPEKKPKKPKPK-PKPKPKPKPKVKPQPKPKKPPSKTAAK----APAAPNQ 134
Query: 431 PELPEVPELTKTQLPEVPEPTKPQILDKKE 460
P P +
Sbjct: 135 PARPPSAASASGAATGPSASYLSGLRRAIR 164
Score = 29.8 bits (67), Expect = 7.3
Identities = 28/115 (24%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 477 PVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPE 536
L + I L P L P P+ EP PK E PP+P P
Sbjct: 24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEE-QPKPPTEPETPPEPTPP 82
Query: 537 LLLPPKPKPELLLPPKPEPEKLLLP---PKPKPKLLLPPKPESELLLPPKPEPEL 588
+ PKP+P+ P KP+PK PP + +P
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPAR 137
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 36.7 bits (85), Expect = 0.11
Identities = 33/209 (15%), Positives = 52/209 (24%), Gaps = 17/209 (8%)
Query: 270 LGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQ---LPEVPEPTKSQLPEV 326
+ + + P + + P PT T + LPE T++
Sbjct: 51 RKKMPKVFQKSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSP 110
Query: 327 PEPTKPQLPEVLEPTTLQLPEDPE---PTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLE 383
+ V L P QL +D P + +
Sbjct: 111 SARRLTRSEGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMP 170
Query: 384 PTKLQ---LPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELT 440
T L L +D E + + P P P LT
Sbjct: 171 ATALASAALFKDDEIRQEVDAARSDQASQS------RLSRSRGNPPAIPPDAAPRQPMLT 224
Query: 441 --KTQLPEVPEPTKPQILDKKEPVLLDKK 467
E + + L + P+ LDKK
Sbjct: 225 RSAGGRFEGEDENLERNLQPQSPITLDKK 253
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 35.4 bits (81), Expect = 0.14
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Query: 295 EPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLP---EDPEP 351
+Q+LP +P PT P + Q + P L +P P P
Sbjct: 2 TQNEQQLPPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVP 61
Query: 352 TKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
T P Q P P P P P L++P P T
Sbjct: 62 TSAMTPH----VVQQAPAQPAPAAPPAAGAALPEALEVPPPPAFTPNG 105
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 35.7 bits (82), Expect = 0.16
Identities = 35/169 (20%), Positives = 53/169 (31%), Gaps = 5/169 (2%)
Query: 285 EPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQ 344
+P + + P P P Q + P Q P L P +Q
Sbjct: 49 QPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQ 108
Query: 345 LPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDP 404
+PT Q P P P++PQ P +P Q P + + PQ P+
Sbjct: 109 -SVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ----PPPQVPQQQQYQSPPQQPQYQ 163
Query: 405 ETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKP 453
+ PQ P+ + L E P + P P + + P
Sbjct: 164 QNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPP 212
Score = 30.3 bits (68), Expect = 7.5
Identities = 36/166 (21%), Positives = 57/166 (34%), Gaps = 9/166 (5%)
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELI 589
+ EL P + LPP P P+ P + + PP + LPP+ +
Sbjct: 54 EQVAKHELADAPLQQVNAALPPAPAPQ--SPQPDQQQQSQAPPSHQYPSQLPPQQVQSVP 111
Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELL 649
P P+ E PP +P+ P P + P+ + P +P+ +
Sbjct: 112 QQPTPQQEPYYPPPSQPQ------PPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQN 165
Query: 650 LPPKPESEL-LLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKP 694
PP+ +S + L PE P P LP + P
Sbjct: 166 PPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAP 211
>gnl|CDD|222556 pfam14121, DUF4289, Domain of unknown function (DUF4289). This
family of membrane bet-barrel proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
655 and 722 amino acids in length. SRU_1264 is identified
by Gene3D as a membrane bound beta-barrel.
Length = 618
Score = 35.7 bits (83), Expect = 0.17
Identities = 24/215 (11%), Positives = 55/215 (25%), Gaps = 38/215 (17%)
Query: 989 EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCH-QNQSPNNYYY 1047
Y+ + Y + S + + Y + Q+ + +
Sbjct: 208 LDRNRYFL----THRYNLGFSRKVPSTKVPVTSFIH--TFDYENKKYQYTQDTAETPTDF 261
Query: 1048 HLNLSQNYYFHQNQSQNYYYHQNLSQ----NYYYHQNLS-LKYYCR---RNLSQNYYCHQ 1099
++N + + + ++NL + LK R N
Sbjct: 262 YVNPYFGGSYDTDSINDSTRYKNLKNEFGIAGFNKWAKGGLKAGARHDLYNYGLPSI--L 319
Query: 1100 NQSQNYYYHQNQSQNYY----YHQNQSQKYYYHQNLSQN--------YYYHQNLSQNY-- 1145
+ N ++ + Q + ++ + Q Y NL +
Sbjct: 320 ITAGNGIPNKLNENELSLGGQLSKRQGKLFHLNAEAEQGLSGGDAGGYRLDGNLDLKFRL 379
Query: 1146 -------YCHQNQSQNYYYHQNQSQKYYYHQNLSQ 1173
N+S ++ + QS Y + N
Sbjct: 380 FVRLSAGGNIHNKSPSFNFLLYQSNYYNWDNNFDN 414
Score = 31.9 bits (73), Expect = 2.2
Identities = 31/212 (14%), Positives = 57/212 (26%), Gaps = 46/212 (21%)
Query: 993 NYYFHQNQSQNYYYHQNLSQNYYYHQNLS----LKYYCRRNLSQ----------NYYCHQ 1038
F+ N Y + + ++NL + + + NY
Sbjct: 258 PTDFYVNPYFGGSYDTDSINDSTRYKNLKNEFGIAGFNKWAKGGLKAGARHDLYNYGLPS 317
Query: 1039 NQSPNNYYYHLNLSQNYYF-----HQNQSQNYYYHQNLSQN--------YYYHQNLSLKY 1085
L++N + Q + ++ + Q Y NL LK+
Sbjct: 318 ILITAGNGIPNKLNENELSLGGQLSKRQGKLFHLNAEAEQGLSGGDAGGYRLDGNLDLKF 377
Query: 1086 YCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLS-QNY------YYH 1138
LS N+S ++ + QS Y + N +N
Sbjct: 378 RLFVRLSAGGN-----------IHNKSPSFNFLLYQSNYYNWDNNFDNENTQRLGGSLNS 426
Query: 1139 QNLSQNYYCHQNQSQNY-YYHQNQSQKYYYHQ 1169
+ + N NY Y+ Q + Q
Sbjct: 427 KKIGTNLSASYTNIDNYTYFGQVDTAARTNTQ 458
Score = 31.5 bits (72), Expect = 3.5
Identities = 29/210 (13%), Positives = 61/210 (29%), Gaps = 46/210 (21%)
Query: 1044 NYYYHLNLSQNY----YFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ-NYYCH 1098
YY Q F QN ++ N Y + S YY + S N+
Sbjct: 93 ELYYKTAGDQGQRLDALFTQNINKRL----NFGFAYKGLR--SRGYYQNQLTSNGNFRLF 146
Query: 1099 QN-QSQNY-------YYHQNQSQN---------YYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
+ +S+N + +QN Y + + +++ L
Sbjct: 147 GSYRSKNKRYQLHAHFSNQNLKNQENGGITNDAYITFPESFNENFENRSRIPV-----RL 201
Query: 1142 SQNYYCHQNQSQNYY-YHQ-----NQSQKYYYHQNLSQNCYYHQ--NRSQNYYYHQNLSQ 1193
+ ++ Y+ H+ ++ S + H ++ Y Y Q+ ++
Sbjct: 202 TNAE--NRLDRNRYFLTHRYNLGFSRKVPSTKVPVTS---FIHTFDYENKKYQYTQDTAE 256
Query: 1194 NYYYHQNQSQKNYYYHLNLSQNYYYHQNLS 1223
Y + + ++NL
Sbjct: 257 TPTDFYVNPYFGGSYDTDSINDSTRYKNLK 286
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 35.2 bits (81), Expect = 0.18
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
+ E K + E P P + Q P+P K + P+V EP ++ E+PEP ++P
Sbjct: 97 ELEEEEDKFEQEEAPIPVQAQ--SQPQPEKVE-PQVEEPRDEEVLEEPEPVAAKVPM--- 150
Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPEL 433
PE ++ PE P+P +PEL
Sbjct: 151 --AEVQPEEETEIEVDEPEEPKP-EPEL 175
Score = 34.4 bits (79), Expect = 0.31
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 267 DPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEV 326
DP G +L E+ K + E P+ + Q P+ +P+ EV E + +V
Sbjct: 91 DPLFGG--ELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKV 148
Query: 327 PEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPED 359
P + E T +++ E EP KP+ D
Sbjct: 149 PMAE----VQPEEETEIEVDEPEEP-KPEPELD 176
Score = 33.6 bits (77), Expect = 0.57
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 427 EPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPE 486
E K E E P + Q PE +PQ+ + ++ +L++ EPV + P+ E E
Sbjct: 101 EEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETE 160
Query: 487 ILLPPKPEPELLLPPKPEPEL 507
I + EP KPEPEL
Sbjct: 161 IEVDEPEEP------KPEPEL 175
Score = 32.8 bits (75), Expect = 1.0
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 306 ETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPE-DPEPTK 364
E K + E P P ++Q PE +PQ V EP ++ E+PEP ++P + +P +
Sbjct: 101 EEDKFEQEEAPIPVQAQSQPQPEKVEPQ---VEEPRDEEVLEEPEPVAAKVPMAEVQPEE 157
Query: 365 PQLPEVPEPTKP 376
EV EP +P
Sbjct: 158 ETEIEVDEPEEP 169
Score = 30.5 bits (69), Expect = 5.4
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 376 PQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPE 435
P LE + + ++ P Q P+ K + P+V EP ++ E PEP ++P
Sbjct: 92 PLFGGELEEEEDKFEQEEAPIPVQAQSQPQPEKVE-PQVEEPRDEEVLEEPEPVAAKVPM 150
Query: 436 VPELTKTQLPEVPEPTKPQILDKKEPV 462
+ E T+ ++ + +EP
Sbjct: 151 AE-------VQPEEETEIEVDEPEEPK 170
Score = 30.1 bits (68), Expect = 7.2
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPEL---LLPPKPEPEL 537
P PE P+ + E++ + EP+ L+ P EL + E
Sbjct: 52 PAPERGFAQAPEDDFEIIRKERKEPDFGRENSFHDPLIDDPLFGGELEEEEDKFEQEEAP 111
Query: 538 L---LPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKP 594
+ +P+PE + P EP + +P+P P E + + E + PKP
Sbjct: 112 IPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKP 171
Query: 595 EPE 597
EPE
Sbjct: 172 EPE 174
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 35.7 bits (82), Expect = 0.21
Identities = 55/259 (21%), Positives = 106/259 (40%), Gaps = 22/259 (8%)
Query: 69 KNTQLHQDSSHGNILETKPPNLLQQNKSHENIPENSETPTPNLDG-TGQLNDNNKSVIK- 126
Q D S LE+ + + + EN +SE +LD + ++ + +
Sbjct: 3846 TANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNE 3905
Query: 127 --WFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDG--KETTEKETGKIAG 182
W N E LL+ + E + N+ + ++E+ K +E KD KE E+ + +
Sbjct: 3906 KLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGI 3965
Query: 183 NGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTI-ATDEA 241
+ + + + ++ P E + PE K + + D+ D D + A DE
Sbjct: 3966 DDEIQPDIQ------ENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADEN 4019
Query: 242 LKAIESQRRVKRRAAKTRDKIKEN--IDPELG--NLSDLNEDLKKPGE--PEVQTPIVPE 295
+ +++ K + D ++EN +D ++ + SDL ED +K E E E
Sbjct: 4020 KEEADAE---KDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEE 4076
Query: 296 PTKQELPEVPETTKPQLPE 314
T+ + E + ++PE
Sbjct: 4077 STEDGVKSDEELEQGEVPE 4095
>gnl|CDD|217769 pfam03867, FTZ, Fushi tarazu (FTZ), N-terminal region. This region
contains the important motif (LXXLL) necessary for the
interaction of FTZ with the nuclear receptor FTZ-F1. FTZ
is thought to represents a category of LXXLL
motif-dependent co-activators for nuclear receptors.
Length = 264
Score = 34.7 bits (79), Expect = 0.21
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
SQ++YY N Y+ H YY + S + Y +Q +Q+ +Y ++
Sbjct: 6 SQSHYYADNMYNMYHAHS--LPPTYYDNSSSSSSYQQTSQGWQPASYQSNYYAHYSQESY 63
Query: 1172 SQNCYYHQNRSQ 1183
S++CYY Q
Sbjct: 64 SESCYYANYHHQ 75
Score = 33.2 bits (75), Expect = 0.65
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 1132 SQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNL 1191
SQ++YY N+ Y+ H YY + S Y + +Q+ +Y ++
Sbjct: 6 SQSHYYADNMYNMYHAHSLPPT--YYDNSSSSSSYQQTSQGWQPASYQSNYYAHYSQESY 63
Query: 1192 SQNYYYHQNQSQ 1203
S++ YY Q
Sbjct: 64 SESCYYANYHHQ 75
Score = 29.7 bits (66), Expect = 9.5
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 1062 SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQ 1121
SQ++YY N+ N Y+ +L YY + S + Y +Q +Q+
Sbjct: 6 SQSHYYADNM-YNMYHAHSLPPTYY-----------DNSSSSSSYQQTSQGWQPASYQSN 53
Query: 1122 SQKYYYHQNLSQNYYYHQNLSQ 1143
+Y ++ S++ YY Q
Sbjct: 54 YYAHYSQESYSESCYYANYHHQ 75
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 34.5 bits (79), Expect = 0.22
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 22/143 (15%)
Query: 329 PTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQ 388
++P +P + QL K V E K QL +LE +
Sbjct: 72 TSEPTVPPEEAEPHAEEEG-------QLAVRKTKQK-----VEEEVKEQLQSLLEKIVVS 119
Query: 389 LPEDPEPT-KPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEV 447
E+ P +PQL ED + Q E + + +T +
Sbjct: 120 KQEEDGPGKEPQLDEDKFLLA------EDSDDRQETLEAGKVHEETEDSYHVEETASEQY 173
Query: 448 PEPTKPQILDKKEPVLLDKKEPV 470
+ K + +++ D KEPV
Sbjct: 174 KQDMKEKASEQENE---DSKEPV 193
Score = 34.1 bits (78), Expect = 0.29
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 3/161 (1%)
Query: 296 PTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPT-KP 354
++ +P + + +V E K QL +LE + E+ P +P
Sbjct: 72 TSEPTVPPEEAEPHAEEEG-QLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEP 130
Query: 355 QLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEV 414
QL ED + E + + E Q ++ + ++ + +
Sbjct: 131 QLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKE-KASEQENEDS 189
Query: 415 PEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQI 455
EP + E + E +
Sbjct: 190 KEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAK 230
Score = 33.0 bits (75), Expect = 0.72
Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%)
Query: 318 PTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQ 377
++ +P + QL K + E K QL + E
Sbjct: 72 TSEPTVPPEEAEPHAEEEG-------QLAVRKTKQKVE-----EEVKEQLQSLLEKIVVS 119
Query: 378 LPEVLEPT-KLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEV 436
E P + QL ED + ET + + E + +
Sbjct: 120 KQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMK- 178
Query: 437 PELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPE 496
+ ++ + + EP + K E + E ++ PV K E L E +
Sbjct: 179 EKASEQENEDSKEPVEKAERTKAETDDVT--EEDYDEEDNPVEDSKAIKEELAKEPVEEQ 236
Query: 497 LLLP 500
+P
Sbjct: 237 QEVP 240
Score = 31.1 bits (70), Expect = 3.2
Identities = 30/170 (17%), Positives = 49/170 (28%), Gaps = 5/170 (2%)
Query: 281 KKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
K EP V P EP +E ++ Q +V E K QL + E E P
Sbjct: 70 KSTSEPTV-PPEEAEPHAEEEGQLAVRKTKQ--KVEEEVKEQLQSLLEKIVVSKQEEDGP 126
Query: 341 TT-LQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
QL ED + E + + E Q ++ + ++ +
Sbjct: 127 GKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKE-KASEQE 185
Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
+ E + E + + E P + V E
Sbjct: 186 NEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEE 235
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 35.6 bits (82), Expect = 0.23
Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 8/84 (9%)
Query: 290 TPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDP 349
P+ + PE E P P ++ PE P P + E P
Sbjct: 45 GPVAKAAEQMAAPEAAE--AA-----PLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQP 97
Query: 350 EPTKPQLPEDPEPTKPQLPEVPEP 373
P P P +P P +
Sbjct: 98 S-AVPAPSAAPAPAEPVEPSLAAN 120
Score = 33.3 bits (76), Expect = 0.92
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 236 IATDEALKAIESQR-RVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVP 294
A + A S+ R++R + R + E G ++ E + P E P
Sbjct: 12 AAFEVITSAQLSRIGRIERELRELRSLVAE---GAAGPVAKAAEQMAAPEAAEAA----P 64
Query: 295 EPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPE--PTKPQLPEVLEPT 341
P E PE P P + ++ E P P P EP
Sbjct: 65 LPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPV 113
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 35.2 bits (81), Expect = 0.23
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 249 RRVKRRAAK-----TRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPE 303
+ +K R RDKI D + +L + LK+ G P V+ + ++E+ E
Sbjct: 354 KELKERVKDAIPEDLRDKIATEEDAK--TTDELRKFLKEKGHPVVKRVVREV-DEEEIEE 410
Query: 304 VPETTKPQLPEVPEPTKSQLPEVPEPTKPQLP 335
E +P E E ++P + P P
Sbjct: 411 EEEAMQP---EEMEMEGFEVPALQMPAASAAP 439
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 35.2 bits (81), Expect = 0.25
Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 16/182 (8%)
Query: 284 GEPEVQTPIVPEPTKQELPEVPETTKPQLP----EVPEPTKSQLPEVPE--PTKPQLPEV 337
GEP P ++ ELP + P + ++P P P +
Sbjct: 93 GEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQR 152
Query: 338 LEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTK 397
EP D + Q P P P + + EP PE + +
Sbjct: 153 PEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDR---EPYDAGRPEYDQRRR 209
Query: 398 PQLPEDPETTKP-----QLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTK 452
P+ +P PE P P + P PE + P + P +
Sbjct: 210 DYDHPRPDWDRPRRDRTDRPE-PPPGAGHVHR-GGPGPPERDDAPVVPIRPSAPGPLAAQ 267
Query: 453 PQ 454
P
Sbjct: 268 PA 269
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 35.0 bits (81), Expect = 0.31
Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 19/147 (12%)
Query: 130 ENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETTEKETGKIAGNGTTKE- 188
E VE L+ E + L RE++ + + + +ET E++ +
Sbjct: 492 EEVEERLERAEDLVEAED-RIERLEERREDLEELIAER--RETIEEKRERAEELRERAAE 548
Query: 189 ---ETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIE--NRVDNNDGTIATDEALK 243
E E A++E E E A +SK + KE IE R+ IA E
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED-- 606
Query: 244 AIESQRRVKRRAAKT------RDKIKE 264
E +R ++R A R+++ E
Sbjct: 607 --EIERLREKREALAELNDERRERLAE 631
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 33.7 bits (77), Expect = 0.37
Identities = 29/119 (24%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 398 PQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILD 457
LP P+ + + +P V PT+P E+ PQ +
Sbjct: 41 IPLPPKPQGDRDEPRVLPAVV----QVVALPTQPPEGVAQEIQDAGDAAAA-SVDPQPVA 95
Query: 458 KKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPK 516
+ PV +PV PPK P +P KP PKPEP+ + P P
Sbjct: 96 QPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKP------TPKPEPKPVAEPAAAPT 148
Score = 32.2 bits (73), Expect = 1.3
Identities = 29/146 (19%), Positives = 42/146 (28%), Gaps = 13/146 (8%)
Query: 234 GTIATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIV 293
GTI AL I + + +D++ P + V P
Sbjct: 11 GTIV-LVALGVIVLPGLLDGKKKHRQDEVAAIPLPPKPQGDRDEPRVLPAVVQVVALPT- 68
Query: 294 PEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTK 353
+P + E+ + V +Q P P P Q P+ +P K
Sbjct: 69 -QPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGV-------PVAAQTPKPVKPPK 120
Query: 354 PQLPEDPEPTKPQLPEVPEPTKPQLP 379
P P KP PEP P
Sbjct: 121 QP-PAGAVPAKP--TPKPEPKPVAEP 143
Score = 30.2 bits (68), Expect = 5.3
Identities = 31/130 (23%), Positives = 43/130 (33%), Gaps = 15/130 (11%)
Query: 566 PKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKP--EPEI----- 618
P LL K + + P P + EP +L L P EI
Sbjct: 24 PGLLDGKKKHRQDEVAAIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGD 83
Query: 619 --LLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEP 676
P+P P + P + P+ + PPK +P KP PKPEP
Sbjct: 84 AAAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKP------TPKPEP 137
Query: 677 ELLLPPKPEP 686
+ + P P
Sbjct: 138 KPVAEPAAAP 147
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 34.5 bits (79), Expect = 0.37
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 349 PEPTKPQLPEDPEPTKPQLP-----EVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPED 403
PEP PQ P P KP+ P E+P P PE P P P PQ
Sbjct: 395 PEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA---RSAPLPPSPQASAP 451
Query: 404 PETTK 408
Sbjct: 452 RNVAS 456
Score = 33.8 bits (77), Expect = 0.73
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 11/80 (13%)
Query: 290 TPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLP-----EVPEPTKPQLPEVLEPTTLQ 344
+P K++ PE PQ P P K + P E+P P PE P
Sbjct: 383 SPAGSPDVKKKAPEPD---LPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA-- 437
Query: 345 LPEDPEPTKPQLPEDPEPTK 364
P P PQ
Sbjct: 438 -RSAPLPPSPQASAPRNVAS 456
Score = 32.6 bits (74), Expect = 1.7
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 309 KPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPED---PEPTKPQLPEDPEPTKP 365
K + PE P Q P P KP+ P P L P PE P P P P
Sbjct: 391 KKKAPEPDLP---QPDRHPGPAKPEAP-GARPAELPSPASAPTPEQQPPVARSAPLPPSP 446
Query: 366 QLPEVPEPTK 375
Q
Sbjct: 447 QASAPRNVAS 456
Score = 31.5 bits (71), Expect = 3.5
Identities = 21/87 (24%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P K + PE P PQ P P KP+ P + E P P PE
Sbjct: 384 PAGSPDVKKKAPE---PDLPQPDRHPGPAKPEAP------GARPAELPSPASAPTPE--- 431
Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPE 432
Q P V L +
Sbjct: 432 ----QQPPVARSAPLPPSPQASAPRNV 454
>gnl|CDD|225750 COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer
membrane].
Length = 796
Score = 34.5 bits (79), Expect = 0.38
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 1132 SQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYY--HQNRSQNYYYHQ 1189
+ Y +Q Y Y Q+ Y Q RS +Y +
Sbjct: 352 TVTLDYAARDAQYTYRDPTGGTLVYRFTAQNGGLGPTDTSRAARYLYGSQARSYSYDANG 411
Query: 1190 NLSQNYYYHQNQSQKNYYYHL-------NLSQNYYYH---QNLSQNYYYHQNSFT 1234
NL+ + Y + +L L + YYY L + Y +T
Sbjct: 412 NLTSDVDYDGVYTTAAQLSYLRGTASLSRLPETYYYDAAGNRLLKQTYTTPWEYT 466
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 33.9 bits (77), Expect = 0.46
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 11/171 (6%)
Query: 332 PQLPEVLEPTTLQLPEDPEPTKPQLPED----PEPTKPQLPEVPEPTKP-QLPEVLEPTK 386
PE L+P + P PE+ E + + + +P +P V E +
Sbjct: 54 ANEPETLQPKNQTENGETAADLPPKPEERWSYIEELEAREVLINDPEEPSNGGGVEESAQ 113
Query: 387 LQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPE 446
L + + Q L P + E + T + P+ + Q
Sbjct: 114 LTAEQRQLLEQMQADMRAAEK--VLATAPS-EQTVAVEARKQTAEKKPQKARTAEAQKTP 170
Query: 447 V---PEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPE 494
V +K + +K+ L + + K PK + PKP+
Sbjct: 171 VETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPK 221
Score = 31.6 bits (71), Expect = 2.4
Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 1/121 (0%)
Query: 458 KKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLP-PKPEPELLLPPKPEPELLLPPKLEPK 516
EP L K + LPPKPE E+L+ EP + +
Sbjct: 54 ANEPETLQPKNQTENGETAADLPPKPEERWSYIEELEAREVLINDPEEPSNGGGVEESAQ 113
Query: 517 LLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPES 576
L + E + E +L P + + + P K + E+
Sbjct: 114 LTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVET 173
Query: 577 E 577
E
Sbjct: 174 E 174
Score = 30.8 bits (69), Expect = 4.9
Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 13/180 (7%)
Query: 306 ETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKP 365
E+ + PE +P P PE E+ E + + + EP+
Sbjct: 50 ESKQANEPETLQPKNQTENGETAADLPPKPE----ERWSYIEELEAREVLINDPEEPSNG 105
Query: 366 QLPEVPE---PTKPQLPEVLEP-----TKLQLPEDPEPT-KPQLPEDPETTKPQLPEVPE 416
E + QL E ++ K+ E T + + KPQ E
Sbjct: 106 GGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAE 165
Query: 417 PTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKE 476
K + +K + + + + + I + DK +P +K E
Sbjct: 166 AQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPKEKAE 225
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 33.8 bits (77), Expect = 0.56
Identities = 21/86 (24%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 284 GEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTL 343
G +V P P PT PETT P+ + PQ E
Sbjct: 198 GPADVFVPATPRPTP-RTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEA--- 253
Query: 344 QLPEDPEPTKPQLPEDPEPTKPQLPE 369
P P P E P PE
Sbjct: 254 --EGTPAPPTPGGGEAPPANATPAPE 277
Score = 32.2 bits (73), Expect = 1.7
Identities = 25/106 (23%), Positives = 31/106 (29%), Gaps = 9/106 (8%)
Query: 328 EPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKL 387
+P P L P + +P P PT P+ PE T P T
Sbjct: 187 DPALPLSAPRLGPADVFVPATPRPT-PRTTASPETTPT--PSTTTSPPSTTIPAPSTTI- 242
Query: 388 QLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPEL 433
P PE T P P E PE ++ EL
Sbjct: 243 -----AAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRYEL 283
Score = 31.1 bits (70), Expect = 4.4
Identities = 23/107 (21%), Positives = 28/107 (26%), Gaps = 9/107 (8%)
Query: 355 QLPEDPEPTKPQLPEVP--EPTKPQLP---EVLEPTKLQLPEDPEPTKPQLPEDPETTKP 409
P + P L E P LP L P + +P P PT P+ PETT
Sbjct: 165 AFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPT-PRTTASPETTPT 223
Query: 410 ---QLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKP 453
+ P PE P E
Sbjct: 224 PSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPA 270
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 34.0 bits (77), Expect = 0.66
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Query: 317 EPTKSQLPEVPEPTKPQLPEVLEPTTLQL-PEDPEPTKPQLPEDPEPTKPQLP-EVPEPT 374
EP+ +Q E P P+ P E L + P PEP +P P+D T+ L + E
Sbjct: 750 EPSAAQ--ESPANPWPRAPPCDEQEPLSVSPYGPEPDRP--PDDDFETRKGLKRKSSEDH 805
Query: 375 KPQLPEVLEPTKL-QLPEDPEPTKPQLPEDPETTKPQLPEVP-EPTKLQLPEVPEPTKPE 432
+PE K L P+ P +PE + P LP P P P EP +P+
Sbjct: 806 ADPIPEGNATKKTCGLQGLPDSLPPAVPET-DRDNPLLPPCPITPEGPPCPPREEPQQPQ 864
Query: 433 LPEVPELTKTQLPEVPE------PTKPQIL 456
P+ P+ + E+ E P P IL
Sbjct: 865 EPQEPQSPSFHISEIGEALFHSTPVSPTIL 894
Score = 32.5 bits (73), Expect = 2.2
Identities = 39/162 (24%), Positives = 56/162 (34%), Gaps = 18/162 (11%)
Query: 285 EPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPE------------VPEPTKP 332
EP +P PEP + + ET K + E +PE +P+ P
Sbjct: 772 EPLSVSPYGPEPDRPPDDDF-ETRKGLKRKSSEDHADPIPEGNATKKTCGLQGLPDSLPP 830
Query: 333 QLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPED 392
+PE L P P P P EP +PQ P+ P+ + E+ E
Sbjct: 831 AVPETDRDNPLLPPCPITPEGPPCPPREEPQQPQEPQEPQSPSFHISEIGEALF-----H 885
Query: 393 PEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELP 434
P P + PE P +V P L +P +P
Sbjct: 886 STPVSPTILFAPEGFIPNQGDVYRPHGKNLGVALSAGEPYVP 927
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 33.8 bits (77), Expect = 0.74
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 29/160 (18%)
Query: 294 PEPTKQELPEVPETTKPQLP----EVPEPTKS-QLPEVPEPTKPQLPE----------VL 338
P P +P PE P+ VP + +P+ P+ P E +
Sbjct: 288 PLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNEENLF 347
Query: 339 EPTTLQLPEDPE--PTKPQLPEDPEPTKPQLPEVPE-PTKPQLPEVLEPTKLQLPEDPEP 395
P ++P++ P P +P E P P P +PE Q P PE
Sbjct: 348 PPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPE-------QEPNIPED 400
Query: 396 TKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPE 435
+ ++PED P PE P+ PE E
Sbjct: 401 SNKEVPED----VPMEPEDDRDNNFNEPKKPENKGDGQNE 436
Score = 33.4 bits (76), Expect = 0.90
Identities = 38/144 (26%), Positives = 53/144 (36%), Gaps = 17/144 (11%)
Query: 277 NEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPE 336
NE L P P+ P P K P P EVP+ +S +P P P P
Sbjct: 317 NEGLDVPDNPQDPVP-PPNEGKDGNPNEENLFPPGDDEVPD--ESNVPPNP-PNVPGGSN 372
Query: 337 VLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPT 396
+ ++ P +P P+ PE Q P +PE + ++PE + PED
Sbjct: 373 SEFSSDVENPPNPPN-----PDIPE----QEPNIPEDSNKEVPEDVPME----PEDDRDN 419
Query: 397 KPQLPEDPETTKPQLPEVPEPTKL 420
P+ PE E P L
Sbjct: 420 NFNEPKKPENKGDGQNEPVIPKPL 443
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 33.1 bits (75), Expect = 0.80
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 283 PGEPEVQTPIVPEP-TKQELPE-VPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
P +V+ P P TK E P+ P T P +V P ++ P TK + P+ P
Sbjct: 33 PSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQ--SP 90
Query: 341 TTLQLPEDPEP 351
TT Q+P + P
Sbjct: 91 TTKQVPTEINP 101
Score = 32.3 bits (73), Expect = 1.6
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 380 EVLEPTKLQLPEDPEP-TKPQLPED-PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVP 437
TK++ P+ P TK + P+ P T P +V P + P TK E P+ P
Sbjct: 31 TTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSP 90
Query: 438 ELTKTQLPEVPEP---------TKPQILDKKEPVLLDKK 467
T Q+P P TKP + K E ++ KK
Sbjct: 91 --TTKQVPTEINPKFKDLRAYYTKPSLEFKNEIGIILKK 127
Score = 31.1 bits (70), Expect = 3.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 347 EDPEPTKPQLPEDPEP-TKPQLPE-VPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDP 404
P TK + P+ P TK + P+ P T P +V P + P TK + P+ P
Sbjct: 31 TTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSP 90
Query: 405 ETTKPQ 410
T +
Sbjct: 91 TTKQVP 96
Score = 30.0 bits (67), Expect = 8.2
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 290 TPIVPEPTKQELPEVPETTKPQLPEVPEP-TKSQLPE-VPEPTKPQLPEVLEPTTLQLPE 347
T ++ T+ P +TK + P+ P TK + P+ P T P +V P
Sbjct: 18 TGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNAT 77
Query: 348 DPEPTKPQLPEDPEPTKPQLPEVPEP 373
P TK + P+ PT Q+P P
Sbjct: 78 TPSSTKVETPQ--SPTTKQVPTEINP 101
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 33.2 bits (75), Expect = 0.81
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 274 SDLNEDLKKPGEPEVQTPIVPEP--TKQELPEV-PETTKPQLPEVPEPTKSQLPEVPEPT 330
+ E + +P + E ++ + KQE + E+T P+ +V P + P+ + T
Sbjct: 89 ASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK-TKVTTPPSTNTPQPMQST 147
Query: 331 KPQLPEVLEPTTLQLPEDPEP 351
K P+ PT Q D P
Sbjct: 148 KSDTPQ--SPTIKQAQTDMTP 166
Score = 31.6 bits (71), Expect = 2.5
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 297 TKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQL 356
K P+ E + P P + Q E T P+ +V P + P+ + TK
Sbjct: 93 EKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK-TKVTTPPSTNTPQPMQSTKSDT 151
Query: 357 PEDPEPTKPQLPEVPE 372
P+ P + Q P+
Sbjct: 152 PQSPTIKQAQTDMTPK 167
Score = 30.9 bits (69), Expect = 4.9
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 357 PEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPE 416
E T + + K P+ E L + P P + Q E+T P+ +V
Sbjct: 76 LEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK-TKVTT 134
Query: 417 PTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
P P+ + TK + P+ P + + Q P+
Sbjct: 135 PPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTPK 167
Score = 30.1 bits (67), Expect = 7.6
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 313 PEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPE 372
E T + + K P+ E +L + P P + Q E T P+ +V
Sbjct: 76 LEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK-TKVTT 134
Query: 373 PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P P+ ++ TK P+ P + Q P+
Sbjct: 135 PPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTPK 167
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 33.6 bits (77), Expect = 0.82
Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 16/188 (8%)
Query: 277 NEDLKKPGEPEVQTPIVPEPTK------QELPEVPETTKPQLPEVPEPTKSQLPEV-PEP 329
+P P+ T E E + Q P++P+P + LP+ P
Sbjct: 128 TAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPR 187
Query: 330 TKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQL 389
+ P+ P+ Q+ P P PQLP+ P LQ
Sbjct: 188 QAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPP--LQQ 245
Query: 390 PEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
P+ P ++ P P+ PQ + P + Q P +PT P L + Q +P
Sbjct: 246 PQFPGLSQQMPPPPPQP--PQQQQQPPQPQAQPPPQNQPTPH-----PGLPQGQNAPLPP 298
Query: 450 PTKPQILD 457
P +PQ+L
Sbjct: 299 PQQPQLLP 306
Score = 33.6 bits (77), Expect = 0.89
Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 11/207 (5%)
Query: 473 DKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPK 532
K EP P PE + + L L + + P+ ++L
Sbjct: 130 PKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQL-----QQRQQAPQLPQPPQQVLPQGM 184
Query: 533 PEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPP 592
P + P + PE PP P + +P+ LP ++ P P+ PP
Sbjct: 185 PPRQAAFPQQGPPEQ--PPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPP 242
Query: 593 KPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 652
+P + + PP P+P P+P+ PP+ +P LPP
Sbjct: 243 LQQP----QFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPP 298
Query: 653 KPESELLLPLKPEPEILLPPKPEPELL 679
+ +LL ++ P+ +L+
Sbjct: 299 PQQPQLLPLVQQPQGQQRGPQFREQLV 325
Score = 32.0 bits (73), Expect = 2.6
Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 16/229 (6%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQL-PEVLEPTTLQ 344
E T P Q P + T P+ P+ +SQ P+ P + L E +E Q
Sbjct: 107 YEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQ-PQPQTPAQKMLSLEEVEAQLQQ 165
Query: 345 LPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDP 404
+ P+ +P P+ P+ P+ P+ P P P + Q +
Sbjct: 166 RQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPP-----GYPQPPQGHPEQVQPQQFL 220
Query: 405 ETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEP-----TKPQILDKK 459
+ P P QLP+ P P + P+ P L++ P P+P PQ +
Sbjct: 221 PAPSQAPAQPPLPP--QLPQQPPP--LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP 276
Query: 460 EPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELL 508
P P L + LPP +P++L + P+ +L+
Sbjct: 277 PPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325
Score = 30.5 bits (69), Expect = 7.6
Identities = 23/132 (17%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Query: 278 EDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV 337
++ + P + LP P L + P SQ P P PQ +
Sbjct: 209 GHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQ 268
Query: 338 LEPTTLQ------LPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPE 391
Q P + Q P P +PQL + + + Q +L
Sbjct: 269 PPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV-QL 327
Query: 392 DPEPTKPQLPED 403
+ + E+
Sbjct: 328 SQQQREALSQEE 339
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough protein
is thought to play a role in the circulative aphid
transmission of potato leaf roll virus. Also in the
family is open reading frame 6 from beet western yellows
virus and potato leaf roll virus both luteovirus and an
unknown protein from cucurbit aphid-borne yellows virus
a closterovirus.
Length = 460
Score = 33.2 bits (76), Expect = 0.88
Identities = 27/141 (19%), Positives = 38/141 (26%), Gaps = 9/141 (6%)
Query: 424 EVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKP 483
V P E + KT P PE + V D KE V D + P
Sbjct: 261 LVLPPEPDEQSSERQTFKT--PPQPESSSDAENGLVSLVDEDDKEEVSRDSESDAPPDDT 318
Query: 484 EPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELL----- 538
+ L +P +L K +P P+L E+
Sbjct: 319 DLTRALAEYEAAAPEVPDAART--VLQGKEQPSPDPVESPGPDLTPGYPKSDEVAGTYLG 376
Query: 539 LPPKPKPELLLPPKPEPEKLL 559
+ L P P +L
Sbjct: 377 GGSVAEGRDPLEADPTPSTVL 397
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 33.1 bits (76), Expect = 0.91
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 273 LSDLNEDLKKP-GEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTK 331
LS+++ P P E T E P+ T P +PT + PEP
Sbjct: 115 LSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEP-PAASKPTPPAAAKPPEPA- 172
Query: 332 PQLPEVLEPTTLQLPE 347
P P P
Sbjct: 173 PAAKPPPTPVARADPR 188
Score = 33.1 bits (76), Expect = 0.96
Identities = 16/84 (19%), Positives = 21/84 (25%), Gaps = 11/84 (13%)
Query: 342 TLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLP 401
+ P P + K PE P+ P P +PT P
Sbjct: 117 EIDTGGAPPAAAPAAAAAAKAEKTT-PEKPKAAAPTPEP---------PAASKPTPPAAA 166
Query: 402 EDPETTKPQLPEVPEPTKLQLPEV 425
+ P P P P P
Sbjct: 167 K-PPEPAPAAKPPPTPVARADPRE 189
Score = 32.7 bits (75), Expect = 1.4
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 325 EVPEPTKPQLPEVL--EPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVL 382
P P E TT + P+ PT P +PT P + PEP P
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEP-PAASKPTPPAAAKPPEPA-PAAKPPP 179
Query: 383 EPTKLQLPE 391
P P
Sbjct: 180 TPVARADPR 188
Score = 31.2 bits (71), Expect = 3.7
Identities = 17/67 (25%), Positives = 20/67 (29%)
Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL 579
+ K PE P PE KP P PP+P P PP P +
Sbjct: 127 AAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARAD 186
Query: 580 LPPKPEP 586
P
Sbjct: 187 PRETRVP 193
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 32.6 bits (74), Expect = 1.1
Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
PP P P P PP P P PP +P PP +P
Sbjct: 44 PPPPPSTAAAAPAPAAPP-PPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102
Query: 641 PPKPEP 646
PP PEP
Sbjct: 103 PPAPEP 108
Score = 31.8 bits (72), Expect = 1.9
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
PP P S P P PP P P PP +P PP +P
Sbjct: 44 PPPPPSTAAAAPAPAAP-PPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102
Query: 631 PPKPEP 636
PP PEP
Sbjct: 103 PPAPEP 108
Score = 29.9 bits (67), Expect = 8.2
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 561 PPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKP--EPELLLPPKPEPEI 618
PP P P P + PP P P P+P+ PP P +P PP +P
Sbjct: 44 PPPPPSTAAAAPAPAAP---PPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100
Query: 619 LLPPKPEP 626
PP PEP
Sbjct: 101 PPPPAPEP 108
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 33.0 bits (76), Expect = 1.1
Identities = 16/126 (12%), Positives = 24/126 (19%), Gaps = 2/126 (1%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT 342
P P P + P+ +
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
Query: 343 LQ-LPEDPE-PTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQL 400
LP +P+ P P P P P P + +D +
Sbjct: 738 PVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
Query: 401 PEDPET 406
D E
Sbjct: 798 RRDAEE 803
Score = 32.7 bits (75), Expect = 1.7
Identities = 23/153 (15%), Positives = 32/153 (20%), Gaps = 9/153 (5%)
Query: 281 KKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
K P+ P K P P P P P
Sbjct: 655 KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA-TPPAGQ 713
Query: 341 TTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQL 400
+ P+ + P VP P +P P P P P
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAAD----DPVPLPPEPDDPPDPAGA----PAQPPPPPAPA 765
Query: 401 PEDPETTKPQLPEVPEPTKLQLPEVPEPTKPEL 433
P P E ++ + P +
Sbjct: 766 PAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798
Score = 32.3 bits (74), Expect = 2.0
Identities = 25/175 (14%), Positives = 34/175 (19%), Gaps = 9/175 (5%)
Query: 282 KPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVP--EPTKSQLPEVPEPTKPQLPEVLE 339
P P P P E + + P V P +
Sbjct: 601 PAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP 660
Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
+ P P P P P
Sbjct: 661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA---TPPAGQADDP 717
Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
+ P+ + P VP P +P+ P P Q P P P
Sbjct: 718 AAQPPQAAQGASAPSPAAD----DPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768
Score = 31.9 bits (73), Expect = 2.9
Identities = 33/159 (20%), Positives = 39/159 (24%), Gaps = 7/159 (4%)
Query: 490 PPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLL 549
P P PE P P P PP P P
Sbjct: 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAP---PPAPAPAAPA 691
Query: 550 PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELL 609
P P P P P + P + P P + +P PEP+
Sbjct: 692 APAGAAPA---QPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDP 748
Query: 610 LPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPEL 648
P P PP P P P P P + E
Sbjct: 749 PDPAGAPAQ-PPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
Score = 31.1 bits (71), Expect = 4.4
Identities = 20/114 (17%), Positives = 20/114 (17%), Gaps = 8/114 (7%)
Query: 321 SQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE 380
S P PQ P P P P P
Sbjct: 400 SAAAAAPAAAPAPAA----AAPAAAAAPAPAAAPQPAPAPAPAPA--PPSPAGNAPAGGA 453
Query: 381 VLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELP 434
P P P PE P P P P P P
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPA--AAPAAPAAPAAPAG 505
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 33.0 bits (75), Expect = 1.2
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 313 PEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPE 372
P P+ + P P P K P E P+ KP+ P+
Sbjct: 17 PAPAPPSPAAAPAPPPPAKTAAPAT--------KAAAPAAAAPRAEKPKKDKPRRERKPK 68
Query: 373 PTKPQLPE--VLEP 384
P E V+EP
Sbjct: 69 PASLWKLEDFVVEP 82
Score = 31.4 bits (71), Expect = 3.4
Identities = 14/68 (20%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 281 KKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
K E P P P P + E P+ KP+ +P
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAP-AAAAPRAEKPKKDKPRRERKPKP 69
Query: 341 TTLQLPED 348
+L ED
Sbjct: 70 ASLWKLED 77
Score = 31.0 bits (70), Expect = 4.7
Identities = 12/65 (18%), Positives = 17/65 (26%)
Query: 328 EPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKL 387
E +P P + P E P+ KP+ +P L
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Query: 388 QLPED 392
ED
Sbjct: 73 WKLED 77
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 32.8 bits (74), Expect = 1.4
Identities = 24/137 (17%), Positives = 31/137 (22%), Gaps = 7/137 (5%)
Query: 316 PEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTK 375
P+ TKS L V T +P P P T
Sbjct: 426 PDTTKSV------IFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTS 479
Query: 376 PQLPEVLEPT-KLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELP 434
LPE PT + + P T P + + P
Sbjct: 480 STLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTA 539
Query: 435 EVPELTKTQLPEVPEPT 451
P T +P P
Sbjct: 540 TSPPTGTTSVPNATSPQ 556
Score = 30.5 bits (68), Expect = 7.7
Identities = 25/163 (15%), Positives = 35/163 (21%), Gaps = 2/163 (1%)
Query: 291 PIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPE 350
L V +P P + P T+ LPED
Sbjct: 428 TTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTS 487
Query: 351 PT-KPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKP 409
PT + + P T P + + P P T
Sbjct: 488 PTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTT 547
Query: 410 QLPEVPEPTKLQLPEVPEPTKPELPEVPE-LTKTQLPEVPEPT 451
+P P + V P + P LT
Sbjct: 548 SVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTG 590
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 32.4 bits (74), Expect = 1.4
Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 23/168 (13%)
Query: 295 EPTKQELPEVPETTKPQL------PEVPEPTKSQLPEVPEPTKPQLPE-VLEPTTLQLP- 346
P E + P T PQ P +P + E Q E ++ + LP
Sbjct: 48 RPISNEEADQPNTLNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLPN 107
Query: 347 -EDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
E + E +PT+PQ + + ++ + P + E
Sbjct: 108 QEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMT-------IEETQSPNVPIEGINSSSE 160
Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKP 453
+ +L E E+ + + Q +P
Sbjct: 161 QLRVELAE-------LAAEIYSDASHRVELAKNFMEPQAETEAQPEAT 201
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 32.7 bits (75), Expect = 1.5
Identities = 44/265 (16%), Positives = 81/265 (30%), Gaps = 22/265 (8%)
Query: 689 LLPPKPETITTTKTLLLDK-KEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDE 747
L + K K K + ++ + L KK+ + + L D
Sbjct: 10 LAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Query: 748 KEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPV 807
E + KK K P K+ + KK + L+ + +
Sbjct: 70 TESDIPKKKTKTAAKAA-----AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDI 124
Query: 808 LLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDK 867
+ + D + LD + D D + D+ E K+ L D
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Query: 868 KEPVLLDKKAPVLLDKKEPVLLDK-KEPV-----------LLDKKEPVLLDKKEPILFEK 915
+ V + + L ++ L +PV LL+ +E V L K+ E
Sbjct: 185 DDFVWDEDDSEALRQARKDAKLTATADPVKAYLKQIGKVKLLNAEEEVELAKR----IEA 240
Query: 916 AALKVQTKPEVFKVPPKDKDEDEPI 940
+ E K+ P+ + + + I
Sbjct: 241 GLYAEELLAEGEKLDPELRRDLQWI 265
Score = 30.3 bits (69), Expect = 6.4
Identities = 24/161 (14%), Positives = 44/161 (27%)
Query: 683 KPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEP 742
PE + + + P K K P K+ + KK
Sbjct: 48 TPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Query: 743 VLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLD 802
+ L+ + + + + D + LD + D E D + + D
Sbjct: 108 KKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDD 167
Query: 803 KKEPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDK 843
+ E K+ L D + V + L + L
Sbjct: 168 EDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTA 208
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3. The
C.elegans Notch pathway, involved in the control of
growth, differentiation and patterning in animal
development, relies on either of the receptors GLP-1 or
LIN-12. Both these receptors promote signalling by the
recruitment of LAG-3 to target promoters, where it then
acts as a transcriptional activator. LAG-3 works as a
ternary complex together with the DNA binding protein,
LAG-1.
Length = 476
Score = 32.2 bits (72), Expect = 1.6
Identities = 25/112 (22%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYY 1157
HQ+Q Q HQ Q Q Q +HQ + Q Y Q Q
Sbjct: 355 HQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQE 414
Query: 1158 HQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYH 1209
Q+ H +Q HQ +Q+ + Y H + Y H
Sbjct: 415 QIQHQQQQAQHHQQAQQ--QHQQPAQHGQMGYGIPNGYPAHMHGHAPAYGAH 464
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 32.3 bits (73), Expect = 1.7
Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 21/161 (13%)
Query: 596 PEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPE 655
++ K E E + P ++ P P + P P P L P L+ PP
Sbjct: 345 KAVVSSAKKEAEEVPPLPQAAPAVVKPGP----MEIPTPVPPPGLAI---PSLVAPP--- 394
Query: 656 SELLLPLKPEPEILLPPKPE------PELLLPPKPEPELLLPPKPETITTTKTLLLDKKE 709
L+ P + P L P+ + P P K + + +L E
Sbjct: 395 -GLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGE 453
Query: 710 PVLLDKKEPVLLDKKEPVLLDKK-EPVLLDKKEPVLLDEKE 749
EP KK+ ++ +P L+ E L +E
Sbjct: 454 AAAALALEPK---KKKKEKEGEELQPKLVMNSEDASLASQE 491
Score = 32.3 bits (73), Expect = 1.8
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 505 PELLLPPKLE-PKLLLPPKSEPELL--LPP------KPEPELLLPPKPKPELLLPPKPEP 555
P LP + ++ K E E + LP KP P + P P P L +P P
Sbjct: 334 PSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAP 393
Query: 556 EKLLLPPKPKPKLLLPPK 573
L+ P + P L P+
Sbjct: 394 PGLVAPTEINPSFLASPR 411
Score = 30.4 bits (68), Expect = 7.6
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 545 PELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPK- 603
P LP + ++ K + + + PP P++ + P P I P P P + IP
Sbjct: 334 PSSSLPTDIGNKAVVSSAKKEAEEV-PPLPQAAPAVVK-PGPMEIPTPVPPPGLAIPSLV 391
Query: 604 PEPELLLPPKPEPEILLPPK 623
P L+ P + P L P+
Sbjct: 392 APPGLVAPTEINPSFLASPR 411
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 31.8 bits (72), Expect = 2.4
Identities = 46/252 (18%), Positives = 79/252 (31%), Gaps = 37/252 (14%)
Query: 313 PEVPEPTKSQLPEVPEPTKPQLPEVL--EPTTLQLPEDPEPTKPQL------PEDPEPTK 364
P PE + P + PE + + ED P+ Q P +P P
Sbjct: 381 PLFPEDESEIAVKPPTEESSRRPEEEKHRFPSEDVWEDS-PSSLQDTATVSTPSNPPPRA 439
Query: 365 PQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPE 424
+ PE + E +P++ + ++ + PE +L E
Sbjct: 440 SETPEQETSRSSSEVSLDPHQSELKSEKK-KARPEVSKQRFPSRDVWEDAPESQELVTTE 498
Query: 425 VPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPE 484
P +TK +P P+ KP +K P + K +P + P P K +
Sbjct: 499 ETPEEVKS--SSPGVTKPAIPSRPKKGKPTSEKRKPPPVPKKPKP-----QIPARPAKLQ 551
Query: 485 P----EILLPPKPEPELLLPPKP----------------EPELLLPPKLEPKLLLPPKSE 524
E +P+ +P +P L L P+ K+L PK
Sbjct: 552 KQQAGEEANSSAFKPKPRVPARPGGSKIAALKAGFASDLNGRLALGPQAPKKVLESPKEP 611
Query: 525 PELLLPPKPEPE 536
+ + +
Sbjct: 612 SKEKKEEDEDTK 623
>gnl|CDD|227270 COG4934, COG4934, Predicted protease [Posttranslational modification,
protein turnover, chaperones].
Length = 1174
Score = 32.0 bits (73), Expect = 2.4
Identities = 22/140 (15%), Positives = 35/140 (25%), Gaps = 21/140 (15%)
Query: 1111 QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN 1170
SQ S +Y Y+ + Q Q Y YYH
Sbjct: 22 SSQYLVL-STSSIQYTLVLGNVNASPVINVSIYLYFTNLGQLQQYVNLIYTPSSPYYHHY 80
Query: 1171 LSQNCYYHQNRSQNYYYHQNLSQ-NYYYHQNQSQKNYYYHL------NLSQ--------- 1214
L+ Q S ++ Y+ Y L +SQ
Sbjct: 81 LTP----SQFESSFGPSSSIVNSLISYFESYGFSVIVYQPLVIVASGTVSQFEKAFNTKI 136
Query: 1215 NYYYHQNLSQNYYYHQNSFT 1234
Y ++ + + N+ T
Sbjct: 137 YVYSYKYKNWGALFGNNTAT 156
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 31.9 bits (72), Expect = 2.6
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 573 KPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPE 617
+P + P EPE P+PEPE P+PEPE P+PEP+
Sbjct: 399 QPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQ 443
Score = 30.4 bits (68), Expect = 7.3
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
+ E+ L + + + P + + + +P ++ P+PE E P+PEPE
Sbjct: 374 QNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPA---MVEPEPEPEPEPEPEPEPE--- 427
Query: 591 PPKPEPEILIPPKPEPE 607
P+PEPE P+PEP+
Sbjct: 428 -PEPEPEPEPEPEPEPQ 443
Score = 30.0 bits (67), Expect = 9.2
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 468 EPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPE 506
+P +++ EP P+PEPE P+PEPE P+PEP+
Sbjct: 406 QPAMVEP-EPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQ 443
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 31.5 bits (71), Expect = 2.6
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 329 PTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQ 388
KP+ + P P P+ PQ+P V
Sbjct: 254 IIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAA--PSVPQVPNV--AVLPD 309
Query: 389 LPEDPEPTKPQLPEDPETTKPQLPEVP 415
+P+ P PE P P +P P
Sbjct: 310 VPQVAPVAAPAAPEVP--AVPVVPAAP 334
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 31.9 bits (72), Expect = 2.7
Identities = 25/191 (13%), Positives = 42/191 (21%), Gaps = 5/191 (2%)
Query: 183 NGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEAL 242
G K ++E T + S + + K E D + +
Sbjct: 258 QGEAPLNALLEILKAKNAEMPGTLNPSFGS--SDESPEWKTFYEALADQLNNLYKLLRTI 315
Query: 243 KAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELP 302
+ + +++ + R + N L P V +
Sbjct: 316 YKHKDETVIEQYLIEGRKLFSTINGLKAHNEILKTASLTAPSRVLAAAAKVAVIAAPQTH 375
Query: 303 EVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEP 362
P + P P L P P PEP
Sbjct: 376 TGP---ADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEP 432
Query: 363 TKPQLPEVPEP 373
P P+ P
Sbjct: 433 VGPVPPQPTNP 443
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 31.7 bits (73), Expect = 2.7
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 5/168 (2%)
Query: 139 LVQQKETAN--VNSADLVNNRENVVKPVERKDGKETTEKETGKIAGNGTTKEETEGTFAK 196
L+++ + V S E K +++ +E + E + A +E A
Sbjct: 20 LLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAA 79
Query: 197 LADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAA 256
E A A ++ ++ A + + ++ ++ A
Sbjct: 80 APAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAAR 139
Query: 257 KTRD--KIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEP-TKQEL 301
+ K + +KP E + ++PE T EL
Sbjct: 140 GGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPETITVAEL 187
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 31.4 bits (72), Expect = 3.3
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 556 EKLLLPPKPKPKLLLPPKPE--SELLLPPKPEPELIIPP---KPEPEILIPPKPEPELLL 610
E++L PP P P +P+ S L +P P P + +PEL
Sbjct: 551 ERVLPPPDLAPPAGPPARPDDWSGLPIPAVPAPAAAAAADGDDDGDPDNGGIRRQPEL-- 608
Query: 611 PPKPEPEILLPPKPEPEL-LLPPKPEPEILLP 641
P+ E + P PE E LL + + P
Sbjct: 609 -PEHEEIVPEPRPPENEFDLLDDDDDDDAARP 639
>gnl|CDD|218155 pfam04575, DUF560, Protein of unknown function (DUF560). Family of
hypothetical bacterial proteins.
Length = 301
Score = 31.1 bits (71), Expect = 3.8
Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 22/146 (15%)
Query: 990 IGQNYY--FHQNQSQNYYYHQ--------NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQN 1039
+ N+Y F N YY+ S Y Y +N + + +Y
Sbjct: 71 LKGNHYLEFRLNTYGKYYWDNKKYNELSVRASLGYGY-KNAKQDVSVLPFVEKRWYGGDR 129
Query: 1040 QSPNN---YYYHLNLSQN--YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQN 1094
S N LS Q Y+ + + +L+L Y N SQ
Sbjct: 130 YSWANGVRLEGSYWLSPKWQLSTALEYKQERYFERKHLDGNIHFVSLTLIYL--PNPSQY 187
Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQN 1120
++ ++Y + + Y +
Sbjct: 188 WFG----GLDFYREDTRDKADSYDRK 209
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a
conserved membrane protein. The yfhO gene is transcribed
in Difco sporulation medium and the transcription is
affected by the YvrGHb two-component system. Some members
of this family have been annotated as glycosyl
transferases of the PMT family.
Length = 835
Score = 31.4 bits (72), Expect = 3.8
Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 45/222 (20%)
Query: 1043 NNYYYHLNLSQNYYFHQNQS--QNYYYHQNLSQNYYYHQNLSL-----KYYCRRN--LSQ 1093
N Y LN + + ++S YY ++ + N +
Sbjct: 440 LNAYLSLNGISKEWQYSSRSLYAEYYKSLEQLVQILKKKDSGFYRIEKMFPRTNNDPMLY 499
Query: 1094 NYY--CHQN-----QSQNYYYHQNQSQN--YYYHQNQSQ--------KYYYHQNLSQNYY 1136
NY + ++ + + Y +QN + KYY + N
Sbjct: 500 NYNGISQFSSILNGNILDFLDNLGFRDSNSRYRYQNGTLLTDSLLGVKYYITKTDELNIP 559
Query: 1137 YHQNLSQNYYCHQNQSQNYYYHQNQ--------SQKYYYHQNLS-------QNCYYHQ-- 1179
Y Y + Y ++NQ + Y L QN
Sbjct: 560 YKVKPDLKKYKPIKNNGQYTLYENQNALPLGFATNSVYLDVKLKKNNPLDNQNALLQGLV 619
Query: 1180 --NRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYH 1219
N + Y+ N ++ + LN +
Sbjct: 620 GTNGGKTYFTPLNFTKISLENITYKNGKLTVTLNKNGPATIT 661
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 30.9 bits (70), Expect = 4.6
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 324 PEVPEPTKPQ-LPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVL 382
PE PEPT + PE T EP + PE T+ E E KP P V
Sbjct: 198 PEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEE--ENNKPVKPPVP 255
Query: 383 EP--TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKL 420
+P + + P P P PE P+ +P L +P P L
Sbjct: 256 KPYISPDEYPSAPLP-----PELPQLLQPSLV-IPFPNLL 289
Score = 30.1 bits (68), Expect = 8.8
Identities = 32/108 (29%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 577 ELLLPPKPEPELIIPPKPE--PEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKP 634
E L P PE P E PE + P E P E PE P +
Sbjct: 189 EGWLGPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETA---ETTPEETEDAPEEE 245
Query: 635 EPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPK---PEPELL 679
+ + PP P+P P+ PL PE LL P P P LL
Sbjct: 246 NNKPVKPPVPKPY----ISPDEYPSAPLPPELPQLLQPSLVIPFPNLL 289
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 30.2 bits (69), Expect = 5.0
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 731 KKEPVLLDKKEPV--LLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKK 788
KKE LL+ KE + L E E L +++ L ++E+ LL K+E LD+K+ L+KK
Sbjct: 51 KKE-ALLEAKEEIHKLRAEAERELKERRNE--LQRQEKRLLQKEE--TLDRKD-ESLEKK 104
Query: 789 EHVLLDKKETVLLDKKEPVLLDKKE 813
E L +K++ L ++ L +K+E
Sbjct: 105 EESLEEKEKE--LAARQQQLEEKEE 127
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 30.9 bits (70), Expect = 5.2
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 10/122 (8%)
Query: 180 IAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATD 239
I G T+K T K+A P V A + D+ + + N
Sbjct: 818 IGGAATSKTHTA---VKIAPIYKGPV-VYVLDASRAVTVMDTLMSAKRKATENGRIKEEY 873
Query: 240 EALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQ 299
+ + ++R KR AA + K P D ++D++ P P T IV
Sbjct: 874 DTAREKHGEQRSKRIAASEQAARKNVFAP------DWSDDIEPPAPPFWGTQIVEASDIA 927
Query: 300 EL 301
EL
Sbjct: 928 EL 929
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 30.9 bits (69), Expect = 5.2
Identities = 56/304 (18%), Positives = 102/304 (33%), Gaps = 18/304 (5%)
Query: 394 EPTKPQLPEDPETTKPQLPEVPEPT--KLQLPEVPEPTKPELPEVPELTKTQLPEVPEPT 451
+PQ + + P + PT EV +P +PE + + +T+ E P+PT
Sbjct: 238 RELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPEPVDEETVAETKAEEEPQPT 297
Query: 452 KPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPP 511
+ +E L + +P +P E + EP L PK ++
Sbjct: 298 QTVETKPTSAPESTVEEN-LPEINQPTQAVQPTSETISTTPVEPTDQLKPKEVDQIQEEL 356
Query: 512 KLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLP 571
K ++ + + L +L + + EPEK + +L P
Sbjct: 357 KKTKEIEVEELPTKKNDLVEINFDDLEELKFELVQTN--QEKEPEKAVENWATDYQLDEP 414
Query: 572 PKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLP 631
+ + P+ + E L+ + E+ + PE P E +
Sbjct: 415 TQSNIDWYKQEDPK---------DLEQLVQDQATLEITEENQISPE----PVEEQPSVES 461
Query: 632 PKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLP 691
PE +++ K E ELL K L +P P + PE P + + ++
Sbjct: 462 TAPEDQVVEAIKEEEELLEQKKAAEFAELFGQPTPTTSIEELLNPEQTQPTEFDEIIIEN 521
Query: 692 PKPE 695
Sbjct: 522 NLDN 525
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 30.6 bits (69), Expect = 5.2
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 348 DPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPE-DPEPTKPQLPEDP 404
+P P + + +P P +VP P P E ++PT + +PE +P+ E P
Sbjct: 58 EPAPPSTMIATNTKPFHPAPIDVP-PDPPAAQEAVQPTAPPSAQSEPERNEPRPEETP 114
>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.
Length = 182
Score = 29.8 bits (67), Expect = 5.6
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 1109 QNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYH 1168
++ + Q+ S ++ N NY N SQ+ Y +Q QS N + ++Q+
Sbjct: 108 KSDNPQANAMQDNSFHENFNNNYPGNY---NNPSQDPYMNQAQSYNQNAYAKENQQA--- 161
Query: 1169 QNLSQNCYYHQN 1180
Q Y +
Sbjct: 162 ----QPPKYENS 169
>gnl|CDD|233777 TIGR02205, septum_zipA, cell division protein ZipA. This model
represents the full length of bacterial cell division
protein ZipA. The N-terminal hydrophobic stretch is an
uncleaved signal-anchor sequence. This is followed by an
unconserved, variable length, low complexity region, and
then a conserved C-terminal region of about 140 amino
acids (see pfam04354) that interacts with the
tubulin-like cell division protein FtsZ [Cellular
processes, Cell division].
Length = 284
Score = 30.3 bits (68), Expect = 5.6
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 324 PEVPEPTK---PQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE 380
+P+P + P + E++ + +D E + P P + PQ V +
Sbjct: 69 HPIPQPREQHLPSISELVAYQRDKSVDDEEASIPMQPTQQQYDMPQPNNV-------AQQ 121
Query: 381 VLEPTKLQLPEDPEPTKPQLPEDPETTKPQ 410
+EP + + P + ++ ++ E T P
Sbjct: 122 TVEPRVAKSLPEASPQEEEVGKNLEVTAPP 151
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 30.5 bits (69), Expect = 6.9
Identities = 24/119 (20%), Positives = 33/119 (27%), Gaps = 8/119 (6%)
Query: 517 LLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPES 576
L P ++ + + PP+ + L P P LPP P P P
Sbjct: 54 LYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTP----VPPGGF 109
Query: 577 ELLLPPKPEPELIIP----PKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLP 631
P+ + P P IL P E E PP E +
Sbjct: 110 RGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKN 168
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 30.2 bits (67), Expect = 7.1
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 540 PPKPKPE-------LLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPP 592
PP P + L L PE LPP P K +E LL P P P
Sbjct: 247 PPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLRPLP-PSADDNI 305
Query: 593 KPEPEILIPPKPEPELLLPPKPEPEIL-LPPKPEP 626
K P L PP P P + E + LPP P
Sbjct: 306 KECPLALKPPPPLPPSVDDNLKECLLAPLPPSALP 340
>gnl|CDD|219739 pfam08190, PIH1, pre-RNA processing PIH1/Nop17. This domain is
involved in pre-rRNA processing. It has has been shown
to be required either for nucleolar retention or correct
assembly of the box C/D snoRNP in Saccharomyces
cerevisiae. The C-terminal region of this family has
similarity to the CS domain pfam04969.
Length = 315
Score = 30.1 bits (68), Expect = 7.3
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 241 ALKAIESQRRVKRRAAKTR---DKIKENIDPELGNLSDLNE---DLKKPGEPEVQTPIVP 294
AL+ IE + V + K K + P++ L + K Q
Sbjct: 124 ALEGIEQKYNVTLDRRNYKILNFKYKGSPQPQVIRLKLPKKVQPTDSKLPASPPQQTGDQ 183
Query: 295 EPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQ 333
+ + Q + E+ + +S + PEPTKP+
Sbjct: 184 KTSGQLIQEIDSEPDEAARPLISEIESSAIQTPEPTKPE 222
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by modifying
local chromatin architecture. These functions require a
conserved stretch of 20 amino acids in the C-terminal
region of ABF1 (amino acids 639 to 662 S. cerevisiae).
The N-terminal two thirds of the protein are necessary
for DNA binding, and the N-terminus (amino acids 9 to 91
in S. cerevisiae) is thought to contain a novel
zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 30.5 bits (68), Expect = 7.4
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNY 1155
HQ +++ HQ+ +Q Q HQ+ Q+++ HQ Q HQ Q Q +
Sbjct: 284 HQISGADHHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQ---QQDLQHQEQHQQH 338
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 30.3 bits (68), Expect = 7.6
Identities = 40/257 (15%), Positives = 94/257 (36%), Gaps = 6/257 (2%)
Query: 695 ETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVL-LDEKEPVLL 753
+ K L +E L +E + + + KE L E
Sbjct: 787 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 846
Query: 754 DKKEPVLLDKKERVLLDKKEPVLLDKK--EPVLLDKKEHVL-LDKKETVLLDKKEPVLLD 810
K E + ++ ER+ + + LL + + L++++ L+ KE ++K+ + +
Sbjct: 847 QKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEE 906
Query: 811 KKEPILLDKKEPVLL--DKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKK 868
++ LL++KE + +E ++L K + +K++ ++E +
Sbjct: 907 SQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRL 966
Query: 869 EPVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKVQTKPEVFK 928
+ L+ E +++ KKE + +KKE + + K +
Sbjct: 967 LLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLEL 1026
Query: 929 VPPKDKDEDEPIFFNEP 945
++ ++ F+ E
Sbjct: 1027 FVSINRGLNKVFFYLEL 1043
>gnl|CDD|213359 cd12825, EcCorA-like, Escherichia coli Mg2+ transporter CorA_like
subfamily. A bacterial subfamily of the Escherichia
coli CorA-Salmonella typhimurium
ZntB_like(EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This subfamily includes the Mg2+ transporters
Escherichia coli, Salmonella typhimurium, and
Helicobacter pylori CorAs (which can also transport
Co2+, and Ni2+). Structures of the intracellular domain
of Vibrio parahaemolyticus and Salmonella typhimurium
ZntB form funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, such as
occur in some ZntB family proteins, may be associated
with the transport of different divalent cations, such
as zinc and cadmium. The functional diversity of MIT
transporters may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 287
Score = 30.0 bits (68), Expect = 7.6
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 217 KRTDSKEDIENRVDNNDGTIATDEALKAIESQR--RVKRRAAKTRDKIKENIDPELGNLS 274
++ S+ED++ N+ I E+L IE QR + ++ + KE + EL +LS
Sbjct: 138 EKQFSEEDLDALTKLNENNITLRESL--IEKQRIITLLLKSPRENSDTKEKLKIELRDLS 195
Query: 275 DLNE 278
L +
Sbjct: 196 SLLD 199
>gnl|CDD|132648 TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB.
The CsaB protein (cell surface anchoring B) of Bacillus
anthracis adds a pyruvoyl group to
peptidoglycan-associated polysaccharide. This addition
is required for proteins with an S-layer homology domain
(pfam00395) to bind. Within the larger group of proteins
described by pfam04230, this model represents a distinct
clade that nearly exactly follows the phylogenetic
distribution of the S-layer homology domain (pfam00395)
[Cell envelope, Surface structures, Protein fate,
Protein and peptide secretion and trafficking].
Length = 298
Score = 29.9 bits (68), Expect = 7.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 614 PEPEILLPPKPEPELLLPPKPEPEILLPPKPEPEL 648
+P LLPP+P P P PEP I++ +P P L
Sbjct: 153 ADPVWLLPPEPWPGG--EPLPEPVIVVSLRPWPLL 185
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.0 bits (67), Expect = 8.1
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
P+PT+ ++P +P + + ++P + P++P PQ + + ++
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSR 260
Query: 409 PQ 410
Q
Sbjct: 261 EQ 262
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 30.0 bits (68), Expect = 8.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 946 KSPPEKPHHSPIPPPPPVLNPPNSEL 971
K PE+ P PV+ P EL
Sbjct: 166 KPAPERATPHWYHAPQPVVTPAEEEL 191
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 30.2 bits (68), Expect = 8.6
Identities = 22/134 (16%), Positives = 33/134 (24%), Gaps = 2/134 (1%)
Query: 373 PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
P P K +KP K + + + T E T+ +
Sbjct: 142 GLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDT--SKETTTEKTEGK 199
Query: 433 LPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPK 492
K P+ K + K+ K+E IL
Sbjct: 200 TSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDES 259
Query: 493 PEPELLLPPKPEPE 506
EP L + E E
Sbjct: 260 AEPTGLDEDEDEDE 273
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 30.3 bits (68), Expect = 9.2
Identities = 30/212 (14%), Positives = 45/212 (21%), Gaps = 22/212 (10%)
Query: 522 KSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLP 581
K + P PPK + L++ P+PKP L
Sbjct: 524 KELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKP--SLGKF-------V 574
Query: 582 PKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLP 641
+P + + + KP+ P P L P L
Sbjct: 575 IGTDPFAFANTVRLTDNMRGGNGVGSSV---KPKGSASSKPLTGPGSDLKPAT----LNG 627
Query: 642 PKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTK 701
P L+ + P P +
Sbjct: 628 KTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLW 687
Query: 702 TLLLDKKEPVL-LDKKEPV-----LLDKKEPV 727
+K V L+KK PV
Sbjct: 688 DTNGEKAGGGTESASTTDVFQNFAGLNKKTPV 719
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 30.0 bits (67), Expect = 9.4
Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 25/134 (18%)
Query: 289 QTPIVPEPTKQELPEVPETTKPQLPEVPE-------------PTKSQLPEVPEPTKPQLP 335
Q + PE Q L EV P P P + Q P P+ +P
Sbjct: 30 QRELTPERLFQHLQEVGYAAPPSPPLSRRLPVDHPVTSQHDPPFEGQSEVQPPPSPEDIP 89
Query: 336 EVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEP 395
E L + + P +P++ P + +LP P + Q P P
Sbjct: 90 VYEEDWPTFLNPNVDKAGPAVPQEAIPLQKELPPPQVPIE------------QKEVKPAP 137
Query: 396 TKPQLPEDPETTKP 409
Q P +PE+ P
Sbjct: 138 LADQSPPEPESWNP 151
>gnl|CDD|205935 pfam13762, MNE1, Mitochondrial splicing apparatus component. MNE1 is
a novel component of the mitochondrial splicing apparatus
responsible for the processing of a COX1 group I intron
in yeast. Yeast cells lacking MNE1 are deficient in
intron splicing in the gene encoding the Cox1 subunit of
cytochrome oxidase but do contain wild-type levels of the
bc1 complex.
Length = 145
Score = 28.8 bits (65), Expect = 9.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 1041 SPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQ 1073
+P++Y + S YFH +Y + L
Sbjct: 114 TPDDYSCLIKASLRGYFH--DLLYFYLYHYLKD 144
>gnl|CDD|148271 pfam06566, Chon_Sulph_att, Chondroitin sulphate attachment domain.
This family represents the chondroitin sulphate
attachment domain of vertebrate neural transmembrane
proteoglycans that contain EGF modules. Evidence has
been accumulated to support the idea that neural
proteoglycans are involved in various cellular events
including mitogenesis, differentiation, axonal outgrowth
and synaptogenesis. This domain contains several
potential sites of chondroitin sulphate attachment, as
well as potential sites of N-linked glycosylation.
Length = 253
Score = 29.6 bits (66), Expect = 9.9
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEP-TKPQL-PEVLEPTKLQLPEDPEPTK 397
P TL P++ PE T+ P P P KP L PE+ + + +++
Sbjct: 100 PATLPTPDEALGNSNPSLALPEATEASNPPSPGPGDKPSLLPELPKESPVEV-WLNLGGS 158
Query: 398 PQLPEDPETTKP 409
P PE T P
Sbjct: 159 TPDPAAPEPTSP 170
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.0 bits (67), Expect = 10.0
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 165 ERKDGKETTEKETGKIAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDS-KE 223
ER + G + E A S+ PT +R ++ E
Sbjct: 34 ERWRLQNKFLLAAGSRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLE 93
Query: 224 DIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDKIKE 264
+ V N D + ++ ++ RR +R+AA ++E
Sbjct: 94 EGSELVVNEDAALDK----ESKKTPRRTRRKAAAASSDVEE 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.134 0.394
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 65,738,244
Number of extensions: 6983313
Number of successful extensions: 14556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9600
Number of HSP's successfully gapped: 996
Length of query: 1235
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1127
Effective length of database: 6,147,370
Effective search space: 6928085990
Effective search space used: 6928085990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.0 bits)