RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14307
(1235 letters)
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 74.7 bits (182), Expect = 1e-13
Identities = 22/244 (9%), Positives = 52/244 (21%), Gaps = 25/244 (10%)
Query: 992 QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNL 1051
+ N + + Q+ S + +
Sbjct: 355 NAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILK 414
Query: 1052 SQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQ 1111
Q Q QS + N Y N +L YY N + +Q N+
Sbjct: 415 QQGITSLQFQSLKEIS----AGNIYITDNSNLCYYHTINWTT---LFSTINQRIVIRDNR 467
Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
++ + S + + Q C + + +
Sbjct: 468 ----KAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFE 523
Query: 1172 SQN--------CYYHQNRSQNYY---YHQNLSQNYYYHQNQSQK---NYYYHLNLSQNYY 1217
+ + C ++ + +++ + + N Y
Sbjct: 524 NDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKY 583
Query: 1218 YHQN 1221
+
Sbjct: 584 ADPD 587
Score = 67.4 bits (163), Expect = 2e-11
Identities = 23/263 (8%), Positives = 57/263 (21%), Gaps = 32/263 (12%)
Query: 992 QNYYFHQNQ-----SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYY 1046
N+ + + + C + + Q +N
Sbjct: 271 HNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNID 330
Query: 1047 YHLN---LSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLS--------LKYYCRRNLSQNY 1095
+N ++ N F Y+ + + L ++
Sbjct: 331 KFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDF 390
Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKY----YYHQNLSQNYYYHQNLSQNYYCHQN- 1150
N + + Q + + N Y N + YY N
Sbjct: 391 SVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINW 450
Query: 1151 ------QSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQK 1204
+Q N+ + + + N + Q LS + +
Sbjct: 451 TTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIE 510
Query: 1205 NYYYHLNLSQNYYYHQNLSQNYY 1227
+ + + + + +
Sbjct: 511 SCNL-----YDGEFREFENDSIC 528
Score = 65.8 bits (159), Expect = 5e-11
Identities = 19/220 (8%), Positives = 44/220 (20%), Gaps = 24/220 (10%)
Query: 983 YFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSP 1042
+ P ++ N + + + ++L + + +
Sbjct: 379 NIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITD 438
Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
N+ + + +Q N + + + C + Q S
Sbjct: 439 NSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLS 498
Query: 1103 QNYYYHQNQSQN--------YYYHQNQSQ--------------KYYYHQNLSQNYYYHQN 1140
+ + +N S H N +
Sbjct: 499 CRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSH 558
Query: 1141 LSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQN 1180
C + + KY C H N
Sbjct: 559 FKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPC--HPN 596
Score = 65.1 bits (157), Expect = 1e-10
Identities = 21/248 (8%), Positives = 48/248 (19%), Gaps = 26/248 (10%)
Query: 993 NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLS 1052
+ Q + Y+ + N + Y
Sbjct: 226 MNFNDSGACV-----TQCPQTFVYNPT---TFQLEHNFNAKYTYGAFC-------VKKCP 270
Query: 1053 QNYYFHQNQ-----SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYY 1107
N+ + + + C + +Q
Sbjct: 271 HNFVVDSSSCVRACPSSKMEVEENGIKMCKPCT----DICPKACDGIGTGSLMSAQTVDS 326
Query: 1108 HQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
N + + Y + + + N
Sbjct: 327 SNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPN 386
Query: 1168 HQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYY 1227
+ S + + + LS Q + + +S Y + S Y
Sbjct: 387 MTDFS--VFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCY 444
Query: 1228 YHQNSFTS 1235
YH ++T+
Sbjct: 445 YHTINWTT 452
Score = 64.7 bits (156), Expect = 1e-10
Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 18/233 (7%)
Query: 983 YFGAVPEIGQN---YYFHQNQ-SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQ 1038
F V EI + N + + + + LSL ++ ++ +
Sbjct: 367 VFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSL 426
Query: 1039 NQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCH 1098
+ Y + S Y+H + N Q N + + N+ C
Sbjct: 427 KEISAGNIYITDNSNLCYYHTINWTTLFSTIN--QRIVIRDNRKAENCTAEGMVCNHLCS 484
Query: 1099 QNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYH 1158
+ Q S + + + +N + C + Q
Sbjct: 485 SDGCWGPGPDQCLSCRRFSRGRICIESC--NLYDGEFREFEN---DSICVECDPQCEKME 539
Query: 1159 QNQSQKYYYHQNLSQNCYYHQNRSQ-------NYYYHQNLSQNYYYHQNQSQK 1204
+ + C + ++ + Y +
Sbjct: 540 DGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHP 592
Score = 40.4 bits (93), Expect = 0.004
Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 9/169 (5%)
Query: 1068 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYY 1127
+ L+ Y QN L Y + + S H++ + + +
Sbjct: 116 TEILNGGVYVDQNKFLCYADTIHWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCW- 174
Query: 1128 HQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQ----KYYYHQNLSQNCYYHQNRSQ 1183
+ Q L++ Q + Y + + +C+ N +
Sbjct: 175 ----GPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFND 230
Query: 1184 NYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
+ Q + Y+ Q + ++ + + + N+ +S
Sbjct: 231 SGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSS 279
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 68.6 bits (167), Expect = 1e-11
Identities = 26/315 (8%), Positives = 71/315 (22%), Gaps = 77/315 (24%)
Query: 991 GQNYYFH----------QNQSQNYYYHQNLS-------------QNYYYHQNLSLKYYCR 1027
G ++ + Q+ + Y + + YY+ ++
Sbjct: 11 GNDWQYDTNGELAKGLRQDSNGKLRYFDLTTGIQAKGQFVTIGQETYYFSKDHGDAQLLP 70
Query: 1028 RNLSQNYYCHQN---QSPNNYYYHLNLS------------QNYYF------------HQN 1060
+Y Q + + + + +F +
Sbjct: 71 MVTEGHYGTITLKQGQDTKTAWVYRDQNNTILKGLQNINGTLQFFDPYTGEQLKGGVAKY 130
Query: 1061 QSQNYYYHQN----------LSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQ- 1109
+ +Y+ Q+ +Y Y + Y+
Sbjct: 131 DDKLFYFESGKGNLVSTVAGDYQDGHYISQDGQTRYADKQNQLVKGLVTVNGALQYFDNA 190
Query: 1110 ------NQSQN-----YYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYH 1158
NQ YY+ + +Y + L + + + + +
Sbjct: 191 TGNQIKNQQVIVDGKTYYFDDKGNGEYLFTNTLDMSTNAFSTKNVAFNHDSSSFDHTVDG 250
Query: 1159 QNQSQKYYYHQNLSQNC--YYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNY 1216
+ +Y +++ N + S + ++ + Q + N
Sbjct: 251 FLTADTWYRPKSILANGTTWRD---STDKDMRPLITVWWPNKNVQVNYLNFMKANGLLTT 307
Query: 1217 YYHQNLSQNYYYHQN 1231
L + Y
Sbjct: 308 AAQYTLHSDQYDLNQ 322
Score = 65.1 bits (158), Expect = 1e-10
Identities = 27/267 (10%), Positives = 67/267 (25%), Gaps = 42/267 (15%)
Query: 991 GQNYYFHQN---QSQNYYYHQNLSQNYYYHQNL-SLKYYCRRNLSQNYYCHQNQSPNNYY 1046
G +F Q + + + +Y+ +L + +Y S +
Sbjct: 110 GTLQFFDPYTGEQLKGGVAKYD-DKLFYFESGKGNLVSTVAGDYQDGHY----ISQDGQT 164
Query: 1047 YHLNLS------------QNYYFHQN---QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNL 1091
+ + YF Q +N + + YY+ + +Y L
Sbjct: 165 RYADKQNQLVKGLVTVNGALQYFDNATGNQIKNQQVIVD-GKTYYFDDKGNGEYLFTNTL 223
Query: 1092 SQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQN--YYYHQNLSQNYYCHQ 1149
+ ++ + + + + + +Y +++ N +
Sbjct: 224 DMSTNAFSTKNVAFNHDSSSFDHTVDGFLTADTWYRPKSILANGTTWRDSTDKDMRP--- 280
Query: 1150 NQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYY- 1208
++ Q Y + + N L + Y +Q
Sbjct: 281 --LITVWWPNKNVQVNYLN-------FMKANGLLTTAAQYTLHSDQYDLNQAAQDVQVAI 331
Query: 1209 --HLNLSQNYYYHQNLSQNYYYHQNSF 1233
+ + Q L + SF
Sbjct: 332 ERRIASEHGTDWLQKLLFESQNNNPSF 358
Score = 54.3 bits (130), Expect = 2e-07
Identities = 26/246 (10%), Positives = 65/246 (26%), Gaps = 27/246 (10%)
Query: 991 GQNYYFHQN---QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYY 1047
G YF Q +N + + YY+ + +Y L + S N +
Sbjct: 182 GALQYFDNATGNQIKNQQVIVD-GKTYYFDDKGNGEYLFTNTLDMSTN---AFSTKNVAF 237
Query: 1048 HLNLSQNYYFHQ--NQSQNYYYHQNLSQN--YYYHQNLSLKYYCRRNLSQNYYCHQNQSQ 1103
+ + S + + +Y +++ N + R ++ + Q
Sbjct: 238 NHDSSSFDHTVDGFLTADTWYRPKSILANGTTWRDST---DKDMRPLITVWWPNKNVQVN 294
Query: 1104 NYYYHQN---QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN-------YYCHQNQSQ 1153
+ + + Y + Q + ++ ++Q+
Sbjct: 295 YLNFMKANGLLTTAAQYTLHSDQYDLNQAAQDVQVAIERRIASEHGTDWLQKLLFESQNN 354
Query: 1154 NYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLS 1213
N + + Q + + Q Y N + + Q + L+
Sbjct: 355 NPSFVKQQFIWNKDSEYHGGGDAWFQGGYLKYG---NNPLTPTTNSDYRQPGNAFDFLLA 411
Query: 1214 QNYYYH 1219
+
Sbjct: 412 NDVDNS 417
Score = 54.3 bits (130), Expect = 3e-07
Identities = 30/280 (10%), Positives = 71/280 (25%), Gaps = 50/280 (17%)
Query: 991 GQNYYFHQN----------QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQN- 1039
+ +YF Q+ +Y Q Y + L Y
Sbjct: 132 DKLFYFESGKGNLVSTVAGDYQDGHYISQDGQTRYADKQNQLVKGLVTVNGALQYFDNAT 191
Query: 1040 --------QSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRN- 1090
+ Y+ + N + + + + ++N ++ + S + +
Sbjct: 192 GNQIKNQQVIVDGKTYYFDDKGNGEYLFTNTLDMSTNAFSTKNVAFNHDSS-SFDHTVDG 250
Query: 1091 --LSQNYYCHQNQSQN--YYYHQNQSQ-----NYYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
+ +Y ++ N + ++ Q Y N+ L
Sbjct: 251 FLTADTWYRPKSILANGTTWRDSTDKDMRPLITVWWPNKNVQVNYL------NFMKANGL 304
Query: 1142 SQNYYCHQNQSQNYYYHQNQSQKYYYHQN----------LSQNCYYHQNRSQNYYYHQNL 1191
+ S Y +Q + L + + QN + ++ Q +
Sbjct: 305 LTTAAQYTLHSDQYDLNQAAQDVQVAIERRIASEHGTDWLQKLLFESQNNNPSFVKQQFI 364
Query: 1192 ----SQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYY 1227
S+ + Q Y + N + + Q
Sbjct: 365 WNKDSEYHGGGDAWFQGGYLKYGNNPLTPTTNSDYRQPGN 404
Score = 45.8 bits (108), Expect = 9e-05
Identities = 18/172 (10%), Positives = 38/172 (22%), Gaps = 44/172 (25%)
Query: 1102 SQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQN-----YY 1156
+Q +Y ++ Y N Q+ + Y + Q YY
Sbjct: 1 AQAGHYITKNGNDWQYDTNGELAKGLRQDSNGKLRYF--DLTTGIQAKGQFVTIGQETYY 58
Query: 1157 YHQNQSQKYYYHQNLSQNCYYHQNRSQN------YYYH---------QNLSQNYYY---- 1197
+ ++ + + Y QN++ +
Sbjct: 59 FSKDHGDAQLLPMVTEGHYGTITLKQGQDTKTAWVYRDQNNTILKGLQNINGTLQFFDPY 118
Query: 1198 --------HQNQSQKNYYYHLN----------LSQNYYYHQNLSQNYYYHQN 1231
K +Y+ Q+ +Y Q Y +
Sbjct: 119 TGEQLKGGVAKYDDKLFYFESGKGNLVSTVAGDYQDGHYISQDGQTRYADKQ 170
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium
difficile}
Length = 332
Score = 64.9 bits (158), Expect = 4e-11
Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 52/285 (18%)
Query: 991 GQNYYFHQN--QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
G+++YF+ + + N Y+ + Y ++ + N Y+
Sbjct: 22 GKHFYFNTDGIMQIGVFKGPN--GFEYFAPANTDANN--IEGQAILYQNKFLTLNGKKYY 77
Query: 1049 LNLS------------QNYYFHQNQSQNYYYHQNLSQN-YYYHQNLSLKYYCRRNLS-QN 1094
+ YYF+ N + Q ++ YY++ N S+ +S ++
Sbjct: 78 FGSDSKAVTGLRTIDGKKYYFNTNTAVAVTGWQTINGKKYYFNTNTSIASTGYTIISGKH 137
Query: 1095 YYCHQN----------QSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
+Y + + Y+ + + L N YY N S+
Sbjct: 138 FYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKA 197
Query: 1145 YY-CHQNQSQNYYYHQNQSQ----------KYYYHQN-LSQNCYYHQNRSQNYYYHQNLS 1192
YY+ N + K +Y +N L Q + + Y+ N
Sbjct: 198 ATGWVTIDGNRYYFEPNTAMGANGYKTIDNKNFYFRNGLPQIGVFKGSNGFEYFAPANTD 257
Query: 1193 QNYYYHQNQSQKNYYYHLNLSQNYYYH---------QNLSQNYYY 1228
N Q +N + HL + YY+ Q ++ YY
Sbjct: 258 ANNIEGQAIRYQNRFLHLL-GKIYYFGNNSKAVTGWQTINGKVYY 301
Score = 49.5 bits (118), Expect = 4e-06
Identities = 25/204 (12%), Positives = 67/204 (32%), Gaps = 26/204 (12%)
Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQN--LSQNYYYHQNLSLKYYCRRNLSQNYYCHQN 1100
+++++H + + + +++Y++ + + + N + Y+ N
Sbjct: 3 SSHHHHHHHHASTGYTSINGKHFYFNTDGIMQIGVFKGPN---GFE--------YFAPAN 51
Query: 1101 QSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYY-YHQ 1159
N Q + +KYY+ + + YY + N + +
Sbjct: 52 TDANNIEGQAILYQNKFLTLNGKKYYFGSDSKAVTGLRTIDGKKYYFNTNTAVAVTGWQT 111
Query: 1160 NQSQKYYYHQN--LSQNCYYHQNRSQNYYYHQN---------LSQNYYYHQNQSQKNYYY 1208
+KYY++ N ++ Y + +++Y++ + + Y +
Sbjct: 112 INGKKYYFNTNTSIASTGYTIIS-GKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNI 170
Query: 1209 HLNLSQNYYYHQNLSQNYYYHQNS 1232
+ L N YY N+
Sbjct: 171 EGQAIRYQNRFLYLHDNIYYFGNN 194
Score = 35.2 bits (81), Expect = 0.11
Identities = 14/127 (11%), Positives = 33/127 (25%), Gaps = 28/127 (22%)
Query: 973 YKDKYTG--VGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNL 1030
Y + T GY I ++ +N + + Y+ +
Sbjct: 210 YFEPNTAMGANGYK----TIDNKNFYFRNGLPQIGVFKGSNGFEYFAPANTDANNIEGQA 265
Query: 1031 S--QNYYCHQNQSPNNYYYHLNLS------------QNYYFHQN---QSQNYYYHQNLSQ 1073
QN + Y+ + + YYF + + + +
Sbjct: 266 IRYQNRF----LHLLGKIYYFGNNSKAVTGWQTINGKVYYFMPDTAMAAAGGLFEID-GV 320
Query: 1074 NYYYHQN 1080
Y++ +
Sbjct: 321 IYFFGVD 327
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 66.1 bits (160), Expect = 6e-11
Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 6/198 (3%)
Query: 303 EVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEP 362
+ ET P+ S E + E +L + P
Sbjct: 20 QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79
Query: 363 TKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQL 422
+ E E PE E + E P + KP+ + +K
Sbjct: 80 NEAATTETAEAASAAKPE--EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
Query: 423 PEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPK 482
+ + KT P+ + + L K EP + V+
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP----GAREDDAINRGSVVLAS 193
Query: 483 PEPEILLPPKPEPELLLP 500
L+ K E +
Sbjct: 194 RRTGHLVNEKASKEAKVQ 211
Score = 64.2 bits (155), Expect = 2e-10
Identities = 30/203 (14%), Positives = 52/203 (25%), Gaps = 1/203 (0%)
Query: 272 NLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPE-VPEPT 330
L +L ++ PE + + E K E K + E V +
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72
Query: 331 KPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLP 390
+ P E T + E KP+ + E + + E T
Sbjct: 73 ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE 132
Query: 391 EDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEP 450
P + ++ + P+ E K E P E V
Sbjct: 133 SKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLA 192
Query: 451 TKPQILDKKEPVLLDKKEPVLLD 473
++ E + K L +
Sbjct: 193 SRRTGHLVNEKASKEAKVQALSN 215
Score = 63.8 bits (154), Expect = 3e-10
Identities = 22/194 (11%), Positives = 49/194 (25%), Gaps = 2/194 (1%)
Query: 317 EPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKP 376
+ ++ +PE + E +T + + E + E + E P
Sbjct: 20 QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHAR-ENKLEKAEGV-ATASETASP 77
Query: 377 QLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEV 436
E + +P + ET + + PE P
Sbjct: 78 ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
Query: 437 PELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPE 496
+ + P + K + + + E +L + ++
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTG 197
Query: 497 LLLPPKPEPELLLP 510
L+ K E +
Sbjct: 198 HLVNEKASKEAKVQ 211
Score = 63.4 bits (153), Expect = 4e-10
Identities = 24/197 (12%), Positives = 51/197 (25%), Gaps = 5/197 (2%)
Query: 336 EVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEP 395
+ +PE+ + + E + + + E + ++ + + E
Sbjct: 17 LYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE--GVATASET 74
Query: 396 TKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEV---PEPTK 452
P E T + +P + V E E + PE + +K
Sbjct: 75 ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESK 134
Query: 453 PQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPK 512
P K + P +K K L ++L +
Sbjct: 135 PAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASR 194
Query: 513 LEPKLLLPPKSEPELLL 529
L+ S+ +
Sbjct: 195 RTGHLVNEKASKEAKVQ 211
Score = 63.1 bits (152), Expect = 6e-10
Identities = 25/197 (12%), Positives = 46/197 (23%), Gaps = 2/197 (1%)
Query: 325 EVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEP 384
+ E P+ E + E + +L +
Sbjct: 20 QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79
Query: 385 TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQL 444
+ E E PE E + E P + KPE + +K
Sbjct: 80 NEAATTETAEAASAAKPE--EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
Query: 445 PEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPE 504
+ Q K K + + + E +L +P +L +
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTG 197
Query: 505 PELLLPPKLEPKLLLPP 521
+ E K+
Sbjct: 198 HLVNEKASKEAKVQALS 214
Score = 56.1 bits (134), Expect = 7e-08
Identities = 19/179 (10%), Positives = 35/179 (19%), Gaps = 6/179 (3%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
P+ E + E E K E + E
Sbjct: 24 TAVPENSGANTELVSGES---EHSTNEA---DKQNEGEHARENKLEKAEGVATASETASP 77
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
+ + + +P+ + +PE
Sbjct: 78 ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
Query: 660 LPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEP 718
K E E+ E L PK + + + V+L +
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196
Score = 55.4 bits (132), Expect = 1e-07
Identities = 22/196 (11%), Positives = 44/196 (22%)
Query: 391 EDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEP 450
+ E P+ E + E + +L + + P
Sbjct: 20 QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79
Query: 451 TKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLP 510
+ + E K E + + +P+ + +PE
Sbjct: 80 NEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEA 139
Query: 511 PKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLL 570
K E ++ E L PK K E + + + L
Sbjct: 140 NKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHL 199
Query: 571 PPKPESELLLPPKPEP 586
+ S+
Sbjct: 200 VNEKASKEAKVQALSN 215
Score = 55.0 bits (131), Expect = 1e-07
Identities = 26/219 (11%), Positives = 47/219 (21%), Gaps = 9/219 (4%)
Query: 344 QLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPED 403
L E T PE + E + E + + + +
Sbjct: 5 HHHHGHHHQLENLYFQGEETAV--PENSGANTELVSGESEHST---NEADKQNEGEHARE 59
Query: 404 PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVL 463
+ K V ++ P E E E K E + +
Sbjct: 60 NKLEKA--EGVATASETASPASNEAATTETAEAASAAKP--EEKASEVVAETPSAEAKPK 115
Query: 464 LDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKS 523
DK+ + KP E K + + K L
Sbjct: 116 SDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWE 175
Query: 524 EPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPP 562
++L + L+ + K+
Sbjct: 176 PGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALS 214
Score = 54.6 bits (130), Expect = 2e-07
Identities = 28/217 (12%), Positives = 41/217 (18%), Gaps = 26/217 (11%)
Query: 490 PPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLL 549
PE E S E + E E K +
Sbjct: 24 TAVPENSGANTELVSGE-------------SEHSTNE--ADKQNEGEHARENKLEKA--- 65
Query: 550 PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELL 609
+ P + + S K + P E + PK + E
Sbjct: 66 EGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK----PKSDKE-- 119
Query: 610 LPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEIL 669
+ +PE K E E+ E L PK + E
Sbjct: 120 --TEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPG 177
Query: 670 LPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLD 706
+ K L
Sbjct: 178 AREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALS 214
Score = 54.2 bits (129), Expect = 2e-07
Identities = 29/219 (13%), Positives = 55/219 (25%), Gaps = 18/219 (8%)
Query: 383 EPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKT 442
L E T PE+ + E + + + E ++ +
Sbjct: 11 HHQLENLYFQGEETAV--PENSGANTELVSGESEHSTNEADKQNEGEHARENKLEK--AE 66
Query: 443 QLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPK 502
+ E P E + E KPE + P PK
Sbjct: 67 GVATASETASPA-----------SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPK 115
Query: 503 PEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPP 562
+ E P+ + +S+P + PK + L P + +
Sbjct: 116 SDKETEAKPEATNQ---GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELL 172
Query: 563 KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP 601
K +P ++ ++ K E +
Sbjct: 173 KWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211
Score = 54.2 bits (129), Expect = 3e-07
Identities = 31/211 (14%), Positives = 52/211 (24%), Gaps = 11/211 (5%)
Query: 380 EVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPEL 439
LE Q E P + E + Q E + +L + +
Sbjct: 12 HQLENLYFQGEETAVPENS--GANTELVSGESEHSTNEADKQ-NEGEHARENKLEKAEGV 68
Query: 440 TKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLL 499
P + + E K E K V+ P E KP+ +
Sbjct: 69 ATASETASPASNEAATTETAEAASAAKPEE----KASEVVAETPSAE----AKPKSDKET 120
Query: 500 PPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLL 559
KPE + E + +P E L K EP
Sbjct: 121 EAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGARE 180
Query: 560 LPPKPKPKLLLPPKPESELLLPPKPEPELII 590
+ ++L + L+ + +
Sbjct: 181 DDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211
Score = 53.8 bits (128), Expect = 3e-07
Identities = 18/178 (10%), Positives = 37/178 (20%), Gaps = 5/178 (2%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
PE E E + E E K E + E
Sbjct: 24 TAVPENSGANTELVSGE---SEHSTNEA--DKQNEGEHARENKLEKAEGVATASETASPA 78
Query: 641 PPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTT 700
+ ++ + +P+ + +PE
Sbjct: 79 SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138
Query: 701 KTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEP 758
+ +P + E L K+ ++ + V+L +
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196
Score = 53.8 bits (128), Expect = 4e-07
Identities = 28/209 (13%), Positives = 50/209 (23%), Gaps = 11/209 (5%)
Query: 465 DKKEPVLLDKKEPVLP--PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPK 522
+ E + +E +P E++ + E E KLE
Sbjct: 12 HQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKA---EGV 68
Query: 523 SEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPP 582
+ P P + E + P + KP+S+
Sbjct: 69 ATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAE------AKPKSDKETEA 122
Query: 583 KPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPP 642
KPE + E + +P E + K EP
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDD 182
Query: 643 KPEPELLLPPKPESELLLPLKPEPEILLP 671
++ + L+ K E +
Sbjct: 183 AINRGSVVLASRRTGHLVNEKASKEAKVQ 211
Score = 53.0 bits (126), Expect = 6e-07
Identities = 17/188 (9%), Positives = 39/188 (20%), Gaps = 5/188 (2%)
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
PE+ E E + E E K E + E
Sbjct: 24 TAVPENSGANTELVSGE---SEHSTNEA--DKQNEGEHARENKLEKAEGVATASETASPA 78
Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLL 690
+ + + +P+ + +PE
Sbjct: 79 SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138
Query: 691 PPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEP 750
K E +K + K + + +++ + +
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198
Query: 751 VLLDKKEP 758
++ +K
Sbjct: 199 LVNEKASK 206
Score = 51.9 bits (123), Expect = 1e-06
Identities = 28/214 (13%), Positives = 47/214 (21%), Gaps = 8/214 (3%)
Query: 399 QLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDK 458
L E T + PE + E + + + E + +K
Sbjct: 5 HHHHGHHHQLENLYFQGEETAV--PENSGANTELVSGESEHSTNEADKQNEGEHAR-ENK 61
Query: 459 KEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLL 518
E E KPE + P + +PK
Sbjct: 62 LEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPS----AEAKPKSD 117
Query: 519 LPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESEL 578
+++PE K + E+ EK L P + K
Sbjct: 118 KETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPG 177
Query: 579 LLPPKPEPELIIPPKP-EPEILIPPKPEPELLLP 611
+ L+ K E +
Sbjct: 178 AREDDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211
Score = 51.1 bits (121), Expect = 2e-06
Identities = 20/206 (9%), Positives = 41/206 (19%), Gaps = 13/206 (6%)
Query: 441 KTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLP 500
+T +PE + + E + E E K E +
Sbjct: 23 ETAVPENSGANTELVSGESEH-------------STNEADKQNEGEHARENKLEKAEGVA 69
Query: 501 PKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLL 560
E + S + + KP+ + +PE
Sbjct: 70 TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ 129
Query: 561 PPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILL 620
+ KP + PK + + P + + +
Sbjct: 130 GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSV 189
Query: 621 PPKPEPELLLPPKPEPEILLPPKPEP 646
L + +
Sbjct: 190 VLASRRTGHLVNEKASKEAKVQALSN 215
Score = 50.7 bits (120), Expect = 3e-06
Identities = 22/212 (10%), Positives = 39/212 (18%), Gaps = 22/212 (10%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
PE ++E E K E +
Sbjct: 22 EETAVPENSGANTELVSGESEHSTNEA-------------DKQNEGEHARENKLEKAEGV 68
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
+ P + K + P E + P+ +
Sbjct: 69 ATASETA---SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK------PKSDKE 119
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
KPE + E + +P E + K E
Sbjct: 120 TEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAR 179
Query: 660 LPLKPEPEILLPPKPEPELLLPPKPEPELLLP 691
++ L+ K E +
Sbjct: 180 EDDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211
Score = 50.3 bits (119), Expect = 4e-06
Identities = 25/207 (12%), Positives = 54/207 (26%), Gaps = 10/207 (4%)
Query: 427 EPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPE 486
+ E VPE + V ++ + + ++ E +K E E
Sbjct: 17 LYFQGEETAVPENSGANTELVSGESEHSTNEADKQ---NEGEHARENKLEKAEGVATASE 73
Query: 487 ILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPE 546
P E + K + P +E + P+ + KP+
Sbjct: 74 TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK------PKSDKETEAKPEAT 127
Query: 547 LLLP-PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPE 605
KP E + +P + + + E ++ +P
Sbjct: 128 NQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRG 187
Query: 606 PELLLPPKPEPEILLPPKPEPELLLPP 632
+L + + E ++
Sbjct: 188 SVVLASRRTGHLVNEKASKEAKVQALS 214
Score = 49.2 bits (116), Expect = 9e-06
Identities = 24/162 (14%), Positives = 39/162 (24%), Gaps = 8/162 (4%)
Query: 549 LPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPEL 608
L + E + +L+ S + E E K E E
Sbjct: 17 LYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE--GVATASET 74
Query: 609 LLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEI 668
P E + K + P E + P+S+ KPE
Sbjct: 75 ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK------PKSDKETEAKPEATN 128
Query: 669 LLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEP 710
+ E + +P E K + + E
Sbjct: 129 QGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170
Score = 39.6 bits (91), Expect = 0.007
Identities = 16/173 (9%), Positives = 34/173 (19%), Gaps = 5/173 (2%)
Query: 611 PPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILL 670
PE E E + E E K E + E
Sbjct: 24 TAVPENSGANTELVSGE---SEHSTNE--ADKQNEGEHARENKLEKAEGVATASETASPA 78
Query: 671 PPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLD 730
+ + T K + K E + +
Sbjct: 79 SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138
Query: 731 KKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPV 783
+ + + EK + K + + +++ + +
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVL 191
Score = 36.1 bits (82), Expect = 0.092
Identities = 19/178 (10%), Positives = 40/178 (22%), Gaps = 5/178 (2%)
Query: 621 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLL 680
PE + E E K E + E
Sbjct: 24 TAVPENSGANTELVSG-----ESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPA 78
Query: 681 PPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKK 740
+ K + + P K + + +P ++ + +
Sbjct: 79 SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138
Query: 741 EPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKET 798
E +P + E L K+ + ++ + V+L + T
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196
Score = 35.3 bits (80), Expect = 0.15
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 7/201 (3%)
Query: 183 NGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEAL 242
N + E + + +E + E+ K+ + + EN+++ +G E
Sbjct: 16 NLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASE-- 73
Query: 243 KAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTP--IVPEPTKQE 300
+ A + PE + E +P+ PE T Q
Sbjct: 74 ---TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Query: 301 LPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDP 360
P + + +P + E K E P E
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVV 190
Query: 361 EPTKPQLPEVPEPTKPQLPEV 381
++ V E +
Sbjct: 191 LASRRTGHLVNEKASKEAKVQ 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 64.0 bits (156), Expect = 2e-10
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 3/175 (1%)
Query: 281 KKPGEPEVQTPIVPE-PTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLE 339
+K PE +T + E P +E+ + E K V E ++ E + EV E
Sbjct: 17 QKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTE 76
Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
PE PE P+ + P +V PE+ +
Sbjct: 77 QVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEA--VSPEEWQAEAET 134
Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
+ + E +L+ E + + VP + Q E + +
Sbjct: 135 VEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEK 189
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase,
choline-binding protein; 1.61A {Streptococcus pneumoniae}
PDB: 2wwd_A* 2wwc_A
Length = 468
Score = 63.2 bits (153), Expect = 3e-10
Identities = 28/291 (9%), Positives = 69/291 (23%), Gaps = 67/291 (23%)
Query: 985 GAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCH---QNQS 1041
+ + + + +YY + +
Sbjct: 17 SSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDD-------------GSKAQSEWIFDN 63
Query: 1042 PNNYYYHLN---------LSQNYYFHQN---QSQNYYYHQNLSQNYYYHQNLSLK----- 1084
++++N NYY + Y N +Y + +
Sbjct: 64 YYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAHQEWQ 123
Query: 1085 ------YYCRRN-------LSQNYYCHQNQS--QNYYYHQNQSQNYYY------------ 1117
YY ++ +Y+ + + QN + + Y+Y
Sbjct: 124 LIGNKWYYFKKWGYMAKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFYLKSDGTYANQEW 183
Query: 1118 HQNQSQKYYYHQN-------LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN 1170
+ + YY+ + NYY + + Y + + K N
Sbjct: 184 QKVGGKWYYFKKWGYMARNEWQGNYYLTGSGAMATDEVIMDGARYIFAASGELKEKKDLN 243
Query: 1171 LSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQN 1221
+ + N Q +++ + S+ N + +
Sbjct: 244 VGWVHRDGKRYFFNNREEQVGTEHAKKIIDISEHNGRINDWKKVIDENEVD 294
Score = 55.1 bits (132), Expect = 1e-07
Identities = 33/227 (14%), Positives = 65/227 (28%), Gaps = 45/227 (19%)
Query: 1038 QNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQN--------LSQN-----YYYHQNLSLK 1084
Q+ ++ + +YY + + N +Y + +
Sbjct: 19 SEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSEWIFDNYYKAWFYINSD---G 75
Query: 1085 YYCRRNLSQNYYCHQN---QSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
Y + NYY + Y N +Y + + + Q + +YY
Sbjct: 76 RYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAHQEWQLIGNKWYY---F 132
Query: 1142 SQNYYCHQNQSQNYYYH-------------QNQSQKYYYHQNLSQNCYYHQNRSQ----N 1184
+ Y ++Q Q Y+ Y+Y L + Y Q
Sbjct: 133 KKWGYMAKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFY---LKSDGTYANQEWQKVGGK 189
Query: 1185 YYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQN 1231
+YY + Y +N+ Q NYY + + Y + +
Sbjct: 190 WYY---FKKWGYMARNEWQGNYYLTGSGAMATDEVIMDGARYIFAAS 233
Score = 43.2 bits (101), Expect = 5e-04
Identities = 16/117 (13%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 1120 NQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN--LSQNCYY 1177
N+++ Q+ + + + + YY + +Q+ +
Sbjct: 1 NETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSEWI 60
Query: 1178 HQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLN--LSQNYYYHQNLSQNYYYHQNS 1232
N + ++Y ++ + Y QN+ NYY ++QN + + + ++++Y ++
Sbjct: 61 FDNYYKAWFY---INSDGRYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSD 114
Score = 33.9 bits (77), Expect = 0.35
Identities = 13/150 (8%), Positives = 31/150 (20%), Gaps = 17/150 (11%)
Query: 977 YTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC 1036
Y GY A E NYY + + Y + + + N
Sbjct: 192 YFKKWGYM-ARNEWQGNYYLTGSGAMATDEVIMDGARYIFAAS----GELKEKKDLNVGW 246
Query: 1037 HQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYY 1096
++ + + ++ ++ + R
Sbjct: 247 VHRDGKRYFFNNREEQVGTEHAKKIIDISEHNGRINDWKKVIDENEVDGVIVRLGYSGKE 306
Query: 1097 CHQNQSQNYYYHQNQSQN-------YYYHQ 1119
+ ++ + Y Y
Sbjct: 307 DKE-----LAHNIKELNRLGIPYGVYLYTY 331
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein translocase,
cell membrane, cell outer fimbrium, transmembrane,
transport; 3.15A {Escherichia coli} PDB: 2vqi_A*
Length = 493
Score = 62.2 bits (151), Expect = 5e-10
Identities = 39/267 (14%), Positives = 77/267 (28%), Gaps = 65/267 (24%)
Query: 971 LVYKDKYTGVG-------GYFGAV-PEIGQN--YYFHQNQSQNYYYHQNLSQNY-YYHQN 1019
V Y + G G + +I Q+ + Q + + S+ + +
Sbjct: 233 AVLAGDYNALAAGAGWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADAD 292
Query: 1020 LSLKYYCRRNLSQNYY----CHQNQSPNNYYYH------LNLSQN--------------- 1054
++ Y R +NY + N+Y + L++N
Sbjct: 293 ITFAGY--RFSERNYMTMEQYLNARYRNDYSSREKEMYTVTLNKNVADWNTSFNLQYSRQ 350
Query: 1055 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYY------- 1107
Y+ ++ Y N N + Q +++ LS + + + + Y
Sbjct: 351 TYWDIRKTDYYTVSVNRYFNVFGLQGVAV------GLSASRSKYLGRDNDSAYLRISVPL 404
Query: 1108 ---HQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQK 1164
+ S + + + Y Y +L+ S Q Q
Sbjct: 405 GTGTASYSGSMSNDRYVNMAGYTDTFNDGLDSY--SLNAGL-----NSGGGLTSQRQINA 457
Query: 1165 YYYHQ----NLSQNCYYHQNRSQNYYY 1187
YY H+ NLS N Q ++
Sbjct: 458 YYSHRSPLANLSANIASLQKGYTSFGV 484
Score = 61.1 bits (148), Expect = 1e-09
Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 43/216 (19%)
Query: 1046 YYHLNLSQNYY-----------------FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCR 1088
Y L+ +Y QS + Q + + S K +
Sbjct: 230 YGGAVLAGDYNALAAGAGWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYS-KRFDN 288
Query: 1089 RNLSQNYYCHQNQSQNYY-YHQNQSQNYYYHQNQSQKYYYHQNLSQNYY-YHQNLSQNYY 1146
+ + ++ +NY Q + Y + +K Y L++N ++ + + Y
Sbjct: 289 ADADITFAGYRFSERNYMTMEQYLNARYRNDYSSREKEMYTVTLNKNVADWNTSFNLQY- 347
Query: 1147 CHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQS--QK 1204
S+ Y+ ++ Y +S N Y++ Q +++ +
Sbjct: 348 -----SRQTYWDIRKTDYY----TVSVNRYFNVFGLQGVAV------GLSASRSKYLGRD 392
Query: 1205 NYYYHLNLS-----QNYYYHQNLSQNYYYHQNSFTS 1235
N +L +S Y ++S + Y + +T
Sbjct: 393 NDSAYLRISVPLGTGTASYSGSMSNDRYVNMAGYTD 428
Score = 36.4 bits (84), Expect = 0.052
Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 37/163 (22%)
Query: 1105 YYYHQNQSQNYYYHQNQSQKYYYHQ-NLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQ 1163
+ + + Y + Y + LS + QS + Q
Sbjct: 219 ASWGLSNQWSLYGGAVLAGDYNALAAGAGWDLGVPGTLSADI----TQSVARIEGERTFQ 274
Query: 1164 KYYYHQNLSQN----------CYYHQNRSQNYY-----YHQNLSQNYYYHQ--------N 1200
+ + S+ Y +NY + +Y + N
Sbjct: 275 GKSWRLSYSKRFDNADADITFAGYRF-SERNYMTMEQYLNARYRNDYSSREKEMYTVTLN 333
Query: 1201 QSQKNYYYHLNLS---QNYYYHQ-----NLSQNYYYHQNSFTS 1235
++ ++ NL Q Y+ + +S N Y++
Sbjct: 334 KNVADWNTSFNLQYSRQTYWDIRKTDYYTVSVNRYFNVFGLQG 376
>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A
{Streptococcus pneumoniae} PDB: 2v04_A 2x8m_A* 2x8o_A*
2x8p_A* 2vyu_A
Length = 311
Score = 60.6 bits (147), Expect = 9e-10
Identities = 39/290 (13%), Positives = 69/290 (23%), Gaps = 83/290 (28%)
Query: 991 GQNYYFHQN----------QSQNYYYHQNLSQN------------YYYHQN--------- 1019
G+ YYF + Y NL N YY+ Q+
Sbjct: 31 GKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDK 90
Query: 1020 LSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYY----FHQNQSQNYYYHQN--LSQ 1073
L+ N + Y S Y+ + NY + YY ++
Sbjct: 91 QVLEAKTSENTGKVYGEQYPLSAEKRTYYFD--NNYAVKTGWIYEDGNWYYLNKLGNFGD 148
Query: 1074 NYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQ 1133
+ Y Q+ +++ +YY + Q ++
Sbjct: 149 DSYNPLP---------IGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNG 199
Query: 1134 NYYY-----------HQNLSQNYYCHQN---------QSQNYYYHQNQS----------- 1162
+YY + YY N +Y+ S
Sbjct: 200 KWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDG 259
Query: 1163 -QKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLN 1211
YY + + +YY + N + Y + N
Sbjct: 260 LTWYYLNAGNGDMKTGWFQVNGKWYY---AYSSGALAVNTTVDGYSVNYN 306
Score = 53.7 bits (129), Expect = 2e-07
Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 32/199 (16%)
Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQN--LSQNYYYHQNLSLKYYCRRNLSQNYYCHQN 1100
N YY + + Y+H+ + YY+ + + Y +
Sbjct: 12 NRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEI------------PGTG---- 55
Query: 1101 QSQNYYYHQNQSQNYYYHQNQSQKYYYHQN-LSQNYYYHQNLSQNYYCHQNQSQNYYYHQ 1159
Y + +Q Q + YY+ Q+ Q L + + Y
Sbjct: 56 ----YRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPL 111
Query: 1160 NQSQKYYYHQNLSQNCY----YHQNRSQNYYYHQN--LSQNYYYHQNQSQKNYYYHLNLS 1213
+ ++ YY N + YY ++ + Y + + +
Sbjct: 112 SAEKRTYY---FDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFH 168
Query: 1214 QNYYYHQNLSQNYYYHQNS 1232
++ +YY S
Sbjct: 169 VTIDIDRSKPAPWYYLDAS 187
>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme,
pneumococcal cell WALL degradation, hydrolase,
glycosidase, multimodular; HET: NAG AMV; 1.69A
{Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB: 2ixv_A*
2j8f_A* 2ixu_A* 1h09_A 1oba_A
Length = 339
Score = 59.2 bits (143), Expect = 3e-09
Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 54/233 (23%)
Query: 1002 QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQ 1061
+ YY S + H N+ + Q PN+ + Y +
Sbjct: 121 KPIYY----SYKPFTHDNVDYQQI------------LAQFPNSLWI-----AGYGLNDGT 159
Query: 1062 SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQ 1121
+ Y+ ++ + + + + + + + Q+ ++ N
Sbjct: 160 ANFEYFPSMDGIRWWQYSS---NPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNG 216
Query: 1122 SQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNR 1181
S Y + + +YY YC ++ ++K+YY L N
Sbjct: 217 SFPYNKWEKIGGVWYY---FDSKGYCLTSEWLKD------NEKWYY---LKDNGAMATGW 264
Query: 1182 SQ---NYYYH----------QNLSQNYYYHQNQS---QKNYYYHLNLSQNYYY 1218
+YY N+YY N+ N + + +Y+
Sbjct: 265 VLVGSEWYYMDDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSG--KGWYF 315
Score = 51.5 bits (123), Expect = 9e-07
Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 54/181 (29%)
Query: 1094 NYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLS--------------QNYYYHQ 1139
+ Y YY S K + H N+ Y +
Sbjct: 109 LRFMQMIADAGYK-------PIYY----SYKPFTHDNVDYQQILAQFPNSLWIAGYGLND 157
Query: 1140 NLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH--------QNRSQNYYYHQNL 1191
+ N+ + ++ + + L Q+ ++ N
Sbjct: 158 G-TANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNG 216
Query: 1192 SQNYYYHQNQSQKNYYYH----------LNLSQNYYYH----------QNLSQNYYYHQN 1231
S Y + YY+ L ++ +YY + +YY +
Sbjct: 217 SFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDD 276
Query: 1232 S 1232
S
Sbjct: 277 S 277
Score = 51.1 bits (122), Expect = 1e-06
Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 20/215 (9%)
Query: 1001 SQNYYYHQNL---SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYF 1057
S + H N+ + +L + Y + + N+ + ++ + S N +
Sbjct: 126 SYKPFTHDNVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQY---SSNPFD 182
Query: 1058 HQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYY 1117
+ + Q+ ++ R N S Y + +YY +
Sbjct: 183 KNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYF-DSKGYCLT 241
Query: 1118 H--QNQSQKYYYHQNLSQNYYYHQNLSQN----YYCHQNQSQNYYYHQNQSQKYYYHQN- 1170
++K+YY L N YY + + + + ++ YY
Sbjct: 242 SEWLKDNEKWYY---LKDNGAMATGWVLVGSEWYYMDDSGAMVTGWVKYKNNWYYMTNER 298
Query: 1171 -LSQNCYYHQNRSQNYYYHQN--LSQNYYYHQNQS 1202
+ + ++ Y+ + N L+ N + +
Sbjct: 299 GNMVSNEFIKSGKGWYFMNTNGELADNPSFTKEPD 333
Score = 39.6 bits (92), Expect = 0.005
Identities = 18/161 (11%), Positives = 37/161 (22%), Gaps = 47/161 (29%)
Query: 964 LNPPNSELVYKDKYTGVGGYFGAVPE-----IGQNYYFHQNQSQNYYYHQNLSQNYYYHQ 1018
LN + Y G+ + + + + + Q+ ++
Sbjct: 155 LNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRN 214
Query: 1019 NLSLKYYCRRNLSQN-YYCHQN--------QSPNNYYYHLNLS------------QNYYF 1057
N S Y + YY N +Y+L + + YY
Sbjct: 215 NGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYM 274
Query: 1058 HQN-------QSQN---YYY-----------HQNLSQNYYY 1077
+ YY + +Y+
Sbjct: 275 DDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSGKGWYF 315
Score = 39.2 bits (91), Expect = 0.008
Identities = 20/176 (11%), Positives = 46/176 (26%), Gaps = 43/176 (24%)
Query: 993 NYYFHQNQSQNYYYHQNLSQN----YYYHQNLSLKYYCRRNLSQNYYCHQ----NQSPNN 1044
Y + + S + + Y N K + ++ Q
Sbjct: 152 GYGLNDG---TANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDDKPKTAGTWKQDSKG 208
Query: 1045 YYYHLNLSQNYYFHQNQSQN--YYYHQN----------LSQNYYYHQNLSLKYYCRRNLS 1092
+++ N Y + YY+ ++ +YY LK
Sbjct: 209 WWFRRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYY-----LKDNGAM--- 260
Query: 1093 QNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYY-----------HQNLSQNYYY 1137
+ S+ YY + + + + ++ YY + +Y+
Sbjct: 261 ATGWVLVG-SEWYYMDDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSGKGWYF 315
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase;
HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Length = 486
Score = 54.9 bits (131), Expect = 1e-07
Identities = 25/234 (10%), Positives = 53/234 (22%), Gaps = 31/234 (13%)
Query: 995 YFHQNQSQNYYYHQNLS------QNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPN--NYY 1046
+N Y + S ++ + N C N N
Sbjct: 118 RIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQ 177
Query: 1047 YHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYY 1106
+ + + + H ++ H C N SQ + + +
Sbjct: 178 FVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE------CLGNCSQPDDPTKCVACRNF 231
Query: 1107 YHQNQ-----SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQ 1161
Y + YY+ Q+ + N S + + Y H N+
Sbjct: 232 YLDGRCVETCPPPYYHFQD-----WRCVNFSFC---QDLHHKCKNSRRQGCHQYVIHNNK 283
Query: 1162 SQKY----YYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLN 1211
Y + + C + + + + +N
Sbjct: 284 CIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVIN 337
Score = 49.5 bits (117), Expect = 6e-06
Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 17/170 (10%)
Query: 1076 YYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQ-- 1133
+N L Y + ++ + ++ + N+ N N
Sbjct: 118 RIEKNNELCYLA----TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATV 173
Query: 1134 -NYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQ----NYYYH 1188
N + + + +C + H ++ H NC + ++ +Y
Sbjct: 174 INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYL 233
Query: 1189 QNL-----SQNYYYHQNQSQKNYYY-HLNLSQNYYYHQNLSQNYYYHQNS 1232
YY+ Q+ N+ + + + Y H N
Sbjct: 234 DGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNK 283
Score = 33.3 bits (75), Expect = 0.55
Identities = 18/157 (11%), Positives = 36/157 (22%), Gaps = 18/157 (11%)
Query: 992 QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNL 1051
H ++ H N + + CR N + C + P Y++
Sbjct: 194 TICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACR-NFYLDGRCVETCPPPYYHFQDWR 252
Query: 1052 SQNYYF-HQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQN 1110
N+ F + + Y H N C Y + +
Sbjct: 253 CVNFSFCQDLHHKCKNSRRQGCHQYVIHNN---------------KCIPECPSGYTMN-S 296
Query: 1111 QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYC 1147
+ K + + + + C
Sbjct: 297 SNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A
{Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A*
2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A
Length = 286
Score = 52.9 bits (126), Expect = 2e-07
Identities = 32/258 (12%), Positives = 75/258 (29%), Gaps = 29/258 (11%)
Query: 979 GVGGYFGAVPEIGQNYYFHQNQSQN---YYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYY 1035
F P N + + +Q + + + + Y + +
Sbjct: 10 RNNEVFFISPSNNTNKVLDKISQSEVKLWNKLSGANQKWRLIYDTNKQAYKIKVMDNTSL 69
Query: 1036 CHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNY 1095
+P + ++S +Q +Y QN ++ Y NL Y
Sbjct: 70 ILTWNAPLS-----SVSV-KTDTNGDNQYWYLLQNYISRNVI-----IRNYMNPNLVLQY 118
Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQS--- 1152
+ +Q + + + ++N L+ + + +N +
Sbjct: 119 NIDDTL-MVSTQTSSSNQFFKFSNCIYEALN-----NRNCKLQTQLNSDRFLSKNLNSQI 172
Query: 1153 -QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYY-----HQNLSQNYYYHQNQSQKNY 1206
+ + + QK+ N +++ Y + + N Y N + Y + Q
Sbjct: 173 IVLWQWIDSSRQKWIIEYNETKSAYTLKCQENNRYLTWIQNSNNYVETYQSTDSLIQYWN 232
Query: 1207 YYHLNLSQNYYYHQNLSQ 1224
+L+ + Y NL
Sbjct: 233 INYLDNDASKYILYNLQD 250
Score = 37.5 bits (86), Expect = 0.023
Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 12/138 (8%)
Query: 1105 YYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQN-----YYYHQ 1159
Q++ + + +QK+ + ++ Y + + +
Sbjct: 28 DKISQSEVKLWNKLSGANQKWRLIYDTNKQAYKIKVMDNTSLILTWNAPLSSVSVKTDTN 87
Query: 1160 NQSQKYYYHQNLSQNCYY--HQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYY 1217
+Q +Y QN + + Q S ++ +
Sbjct: 88 GDNQYWYLLQNYISRNVIIRNYMNPNLVLQYNIDDTLMVSTQTSSSNQFFKF-----SNC 142
Query: 1218 YHQNLSQNYYYHQNSFTS 1235
++ L+ Q S
Sbjct: 143 IYEALNNRNCKLQTQLNS 160
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 52.4 bits (125), Expect = 8e-07
Identities = 37/320 (11%), Positives = 98/320 (30%), Gaps = 54/320 (16%)
Query: 952 PHHSPIPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQN-----QSQNYYY 1006
H I +L+ + VY KY+ + N Y +
Sbjct: 86 THSDHIGNVDELLSTYPVDRVYLKKYSD--SRITNSERLWDNLYGYDKVLQTATETGVSV 143
Query: 1007 HQNLSQNYYYHQ--NLSLKYYCRRNLSQNYYCHQNQSPNNYY---YHLNLSQNYYFHQNQ 1061
QN++Q + Q ++ ++ Y N + + + +N + ++ +
Sbjct: 144 IQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGD 203
Query: 1062 SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQN-----QSQNYY 1116
N + ++ +L +K+ + +++ ++++ + + Q+ +
Sbjct: 204 LDNVHGAEDKYGPLIGKVDL-MKFNHHHDTNKSN------TKDFIKNLSPSLIVQTSDSL 256
Query: 1117 YHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY 1176
+N Y L + N + Y N S Y + +
Sbjct: 257 PWKNGV-DSEYVNWLKERGIERINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWH 315
Query: 1177 YHQNRSQNYYYHQNLS------------QNYYYHQN---------QSQKNYYYHLNLSQN 1215
+Y + + + YY++Q + +++Y L+ +
Sbjct: 316 KSAY-GNWWYQAPDSTGEYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFY---LTDS 371
Query: 1216 YYYHQNLSQN----YYYHQN 1231
+N + YY+++
Sbjct: 372 GASAKNWKKIDGIWYYFNKE 391
Score = 50.1 bits (119), Expect = 4e-06
Identities = 32/269 (11%), Positives = 83/269 (30%), Gaps = 44/269 (16%)
Query: 973 YKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1032
GV + + + ++ ++ + + + S K
Sbjct: 255 SLPWKNGVDSEYVNWLKERGIERINAASKDYDATVFDIRKDGFVNISTSYKPI------P 308
Query: 1033 NYYCHQNQSPNNYYYHLNLSQNYY----FHQNQSQNYYYHQ--NLSQNYYYHQNLSLKYY 1086
++ ++S +++ +++ + + YY++Q L QN + N + +Y
Sbjct: 309 SFQAGWHKSAYGNWWYQAPDSTGEYAVGWNEIEGEWYYFNQTGILLQNQWKKWN-NHWFY 367
Query: 1087 CRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQN-------LSQN---YY 1136
+ + + YY+++ + Q++ Q YY + L YY
Sbjct: 368 LTDSGASAKNWKKIDGIWYYFNKENQMEIGWVQDKEQWYYLDVDGSMKTGWLQYMGQWYY 427
Query: 1137 YHQN-------LSQN---YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH---QNRSQ 1183
+ + + YY + Q YY L + ++
Sbjct: 428 FAPSGEMKMGWVKDKETWYYMDSTGVMKTGEIEVAGQHYY----LEDSGAMKQGWHKKAN 483
Query: 1184 NYYYHQNLSQNYYYHQNQSQ-KNYYYHLN 1211
++Y+ + + K+ +Y L
Sbjct: 484 DWYF---YKTDGSRAVGWIKDKDKWYFLK 509
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 51.3 bits (122), Expect = 9e-07
Identities = 19/241 (7%), Positives = 59/241 (24%), Gaps = 9/241 (3%)
Query: 994 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQ 1053
Y + C++ + Y YH Q
Sbjct: 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113
Query: 1054 NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQ 1113
+ + + + L + ++ QN Y + Y + +
Sbjct: 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKK 173
Query: 1114 NYYYHQ---NQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN 1170
+ Q + + ++ Y N ++ Y ++ Y + +
Sbjct: 174 GIDLFEQILKQLEALHDNEEFDVKVRY--NHAKALYLDSRYEESLYQVNKAIEISCRINS 231
Query: 1171 LSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQ 1230
++ + R + + ++ + ++ + + Y + L +
Sbjct: 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF----DILEMHAYKEALVNKISRLE 287
Query: 1231 N 1231
+
Sbjct: 288 H 288
Score = 47.8 bits (113), Expect = 1e-05
Identities = 20/212 (9%), Positives = 46/212 (21%), Gaps = 4/212 (1%)
Query: 1022 LKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNL 1081
+ + + Y + + + Y N + YH
Sbjct: 52 IAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF 111
Query: 1082 SLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
+ ++ + + + Q Y ++ Y + L
Sbjct: 112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL 171
Query: 1142 SQ-NYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQN 1200
+ Q Q H N+ N + Y +R + Y N + N
Sbjct: 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHA-KALYLDSRYEESLYQVNKAIEISCRIN 230
Query: 1201 QSQKNYYYHLNLSQNYYYHQNLSQ--NYYYHQ 1230
+ + + Y +
Sbjct: 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262
Score = 45.2 bits (106), Expect = 7e-05
Identities = 18/217 (8%), Positives = 55/217 (25%), Gaps = 7/217 (3%)
Query: 993 NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLS 1052
Q + + Y + ++ + Y + L
Sbjct: 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142
Query: 1053 QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSL-KYYCRRNLSQNYYCHQNQSQNYYYHQNQ 1111
+ QN Y ++ Y + L + L Q H N+ + N
Sbjct: 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202
Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
++ Y + Y + +++ + + + + + +
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262
Query: 1172 SQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYY 1208
+ + + Y + L ++ ++++
Sbjct: 263 ASFFFDILE---MHAYKEALVNKISRLEH---HHHHH 293
Score = 44.0 bits (103), Expect = 2e-04
Identities = 18/199 (9%), Positives = 47/199 (23%), Gaps = 7/199 (3%)
Query: 989 EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
+ +H Q + ++ + + L Y
Sbjct: 100 NELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL--TGIDVYQNLYI 157
Query: 1049 LNLSQNYYFHQNQSQ--NYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYY 1106
N N Y + + Q L Q H N R N ++ Y ++ Y
Sbjct: 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217
Query: 1107 YHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYY 1166
+ + + + + + ++ ++ +
Sbjct: 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE---MHA 274
Query: 1167 YHQNLSQNCYYHQNRSQNY 1185
Y + L ++ ++
Sbjct: 275 YKEALVNKISRLEHHHHHH 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 2e-06
Identities = 52/323 (16%), Positives = 91/323 (28%), Gaps = 92/323 (28%)
Query: 19 LKPFLLMKLDLEKVRPVQTYVAYG------TDITVPT-NIYNVQCFSST-----TVEHSR 66
L+P+L ++ L ++RP + + G T + + Y VQC +++
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 67 RPKNTQLHQDSSHGNILETKPPNLLQQNKSHENIPENSET------------PTPN---- 110
P+ +L PN ++ NI + P N
Sbjct: 194 SPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 111 LDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGK 170
L N N F N+ C + L+ T D ++ ++
Sbjct: 250 LL-----NVQNAKAWNAF--NLSCKI--LLT---TRFKQVTDFLSAATTTHISLDHHSM- 296
Query: 171 ETTEKETGKIAGNGTTKEETEGTFAKLADSETN--PTEVAERTAP-------ESSKRTDS 221
T +E + K D P E T P ES + D
Sbjct: 297 -------------TLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIR--DG 340
Query: 222 KEDIEN----RVDNNDGTIATD-EALKAIESQRRVKRRA---------AKT-----RDKI 262
+N D I + L+ E ++ R + D I
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 263 K---ENIDPELGNLSDLNEDLKK 282
K + +L S + + K+
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKE 423
Score = 50.6 bits (120), Expect = 3e-06
Identities = 49/352 (13%), Positives = 97/352 (27%), Gaps = 106/352 (30%)
Query: 754 DKKEPVLLDKKERVL--LDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEP-VLLD 810
+L+ +++L +D D + L H + + +L K LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLL- 248
Query: 811 KKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILD------KKEPVLLDKKEPVL 864
+LL+ + + + +LL + + D L +
Sbjct: 249 ----VLLNVQNAKAWNA-----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 865 LDKKEPVL---LDKKA---PVLLDKKEPVLLD------KKEPVLLDKKEPVLLDKKEPIL 912
D+ + +L LD + P + P L + D + V DK I+
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 913 FEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSPPEKPHHSPIPPPPPVL-----NPP 967
+++L V E + + +F P + IP +L +
Sbjct: 360 --ESSLNVLEPAEY-----RKMFDRLSVF----------PPSAHIPTI--LLSLIWFDVI 400
Query: 968 NSE------------LVYKDKYTGVGGYFGAVPEIGQNYYFH-------QNQSQNYYYHQ 1008
S+ LV K Y H+
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKEST-------------ISIPSIYLELKVKLENEYALHR 447
Query: 1009 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYY-----YHLNLSQNY 1055
++ +Y K + +L Y + Y+ +HL ++
Sbjct: 448 SIVDHYNIP-----KTFDSDDLIPPYL-------DQYFYSHIGHHLKNIEHP 487
Score = 40.2 bits (93), Expect = 0.006
Identities = 7/72 (9%), Positives = 19/72 (26%), Gaps = 13/72 (18%)
Query: 1099 QNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYH 1158
Q + + +Y H+++ +Y + + Y+Y
Sbjct: 420 QPKESTISIPSIYLE---LKVKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYS 475
Query: 1159 QNQSQKYY--YH 1168
+ +H
Sbjct: 476 -------HIGHH 480
Score = 29.4 bits (65), Expect = 9.2
Identities = 19/176 (10%), Positives = 46/176 (26%), Gaps = 52/176 (29%)
Query: 114 TGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETT 173
TG+ K ++ F + D + +++ K + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFD----------------CKDVQDMPKSI-------LS 47
Query: 174 EKETGKIAGNGTTKEETEGTFAKLADSETNPTE-------------VAERTAPESSKRTD 220
++E I + T F L + + + E + +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 221 SKEDIENRVDN--NDGTIATDEALKAIESQRRVKRRAAKTRDKIKE---NIDPELG 271
+ D ND + ++ V R + K+++ + P
Sbjct: 108 MTRMYIEQRDRLYNDNQVF---------AKYNVSRL--QPYLKLRQALLELRPAKN 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide
repeat, 3-helix bundle, phosphorelay signa transduction,
phosphatase; 2.19A {Bacillus subtilis}
Length = 378
Score = 50.6 bits (121), Expect = 2e-06
Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 32/201 (15%)
Query: 1038 QNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC 1097
++Q YY + + Y ++ K
Sbjct: 47 EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL----------- 95
Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQSQK--YYYHQ--NLSQNYYYHQNLSQNYYCHQNQSQ 1153
YY + Y + Q + + YY + ++ ++ +
Sbjct: 96 --TGLLKYYSLFFRG-MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF---KVA- 148
Query: 1154 NYYYHQNQSQK--YYYHQNL---SQNCYYHQNRSQNYYYHQNLSQNYYYHQN--QSQKNY 1206
YYH Q+ Y+ Q L + Y Q+ + ++ NY ++ ++ +
Sbjct: 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF---VIAGNYDDFKHYDKALPHL 205
Query: 1207 YYHLNLSQNYYYHQNLSQNYY 1227
L L+ + + ++ +
Sbjct: 206 EAALELAMDIQNDRFIAISLL 226
Score = 45.6 bits (108), Expect = 8e-05
Identities = 31/258 (12%), Positives = 65/258 (25%), Gaps = 40/258 (15%)
Query: 998 QNQSQNYYYH-----QNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPN--NYYYHLN 1050
++Q YY L +Y L + Q + YY
Sbjct: 47 EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF 106
Query: 1051 LSQNYYFHQNQSQN--YYYHQ--NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYY 1106
Y F Q + YY + + ++ ++ Y H Q+
Sbjct: 107 -RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF---KVA-EAYYHMKQTHVSM 161
Query: 1107 YHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQN--YYYHQ--NQS 1162
YH Q+ + Y Y Q+ + ++ NY + +
Sbjct: 162 YHILQALDIY-----QNHPLYSIRTIQSLF---VIAGNYD-DFKHYDKALPHLEAALELA 212
Query: 1163 QKYYYHQNLSQ------NCYYHQNRSQN--YYYHQNLSQNYYYHQNQSQKNYYYHLNLSQ 1214
+ ++ N Y Q ++ + + + K + LS
Sbjct: 213 MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF---GLSW 269
Query: 1215 NYYYHQNLSQNYYYHQNS 1232
+ + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEG 287
>1ybi_A HA33A, HA33/A, non-toxin haemagglutinin HA34; beta-trefoil; 1.50A
{Clostridium botulinum}
Length = 288
Score = 49.0 bits (116), Expect = 4e-06
Identities = 20/205 (9%), Positives = 54/205 (26%), Gaps = 10/205 (4%)
Query: 1038 QNQSPNNYYY-HLNLSQNYYFHQNQS--QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQN 1094
QN + N +F+Q + +N + + + + Y +++ +
Sbjct: 3 QNSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIH 62
Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQN 1154
N + + +Q + +++ N + + +
Sbjct: 63 NT---NLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVA 119
Query: 1155 YYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKN----YYYHL 1210
+ Y + + ++ + L N Q Y +
Sbjct: 120 RNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDY 179
Query: 1211 NLSQNYYYHQNLSQNYYYHQNSFTS 1235
+Q + N + Y N+ S
Sbjct: 180 GRNQKWTIRYNEEKAAYQFFNTILS 204
Score = 47.5 bits (112), Expect = 2e-05
Identities = 19/218 (8%), Positives = 56/218 (25%), Gaps = 29/218 (13%)
Query: 991 GQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLK--------YYCRRNLSQNYYCHQNQSP 1042
+ + + ++ Y +++ + + L+ +Q + ++
Sbjct: 40 LERWRLIYDSNKAAYKIKSMD-IHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGN 98
Query: 1043 NNYY----YHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYH----QNLSLKYYCRRNLSQN 1094
N++ + NL + + + + +L+ +
Sbjct: 99 NSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDL 158
Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL-SQNYYCHQNQS- 1152
Q Y + ++QK+ N + Y N N S
Sbjct: 159 NKVVQQVDVT----NLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSN 214
Query: 1153 ------QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQN 1184
+ N +Q + + + Y ++
Sbjct: 215 GNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRD 252
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor,
immunity, signaling transferase; HET: NAG NDG; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3p11_A*
Length = 621
Score = 50.0 bits (118), Expect = 4e-06
Identities = 28/279 (10%), Positives = 59/279 (21%), Gaps = 34/279 (12%)
Query: 990 IGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLS----------QNYY---- 1035
G Q ++ Q + + N C S +++
Sbjct: 176 WGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGA 235
Query: 1036 CHQNQSPNNYYYHLNLSQ-----------NYYFHQNQSQNYYYHQNL-----SQNYYYHQ 1079
C P Y+ Q + N+ Q +
Sbjct: 236 CVPRC-PQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVD 294
Query: 1080 NLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNL-SQNYYYH 1138
LK C S + + + S + + N
Sbjct: 295 KNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPW 354
Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNR--SQNYYYHQNLSQNYY 1196
+ N + + ++ + Y++ S
Sbjct: 355 HKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIM 414
Query: 1197 YHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS 1235
+ N + + +S Y Q Y+H ++T
Sbjct: 415 KNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTK 453
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/241 (8%), Positives = 57/241 (23%), Gaps = 9/241 (3%)
Query: 998 QNQSQNYYYHQNL-----SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLS 1052
+ N+ Q + LK C S + + + +
Sbjct: 269 ASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSN 328
Query: 1053 QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQS 1112
+ + + + N + + N+ + N
Sbjct: 329 IDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVRE-ITGYLNIQSWPPHM 387
Query: 1113 QNYYYHQNQSQ---KYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQ 1169
N+ N + + Y++ S + N++ + + + + +++ YH
Sbjct: 388 HNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHH 447
Query: 1170 NLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYH 1229
+L+ + N + + + +NY
Sbjct: 448 SLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRG 507
Query: 1230 Q 1230
Sbjct: 508 G 508
Score = 47.4 bits (111), Expect = 3e-05
Identities = 24/292 (8%), Positives = 58/292 (19%), Gaps = 53/292 (18%)
Query: 990 IGQNYYFHQNQSQNY-YYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
I +N + ++ ++ N C + ++
Sbjct: 130 IEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKT 189
Query: 1049 LNLSQ--NYYFHQNQSQ---------------------NYYYHQNL-----SQNYYYHQN 1080
+ Q + F N +Q ++ Q Y++
Sbjct: 190 ICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKL 249
Query: 1081 LSLKYYCRRNLS----QNYYCHQNQSQNYYYHQNQ-----SQNYYYHQNQSQKYYYHQ-N 1130
+ N C + N+ Q + K
Sbjct: 250 T---FQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGG 306
Query: 1131 LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQN 1190
L + + + + + + + N N
Sbjct: 307 LCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLN 366
Query: 1191 LSQNYY--------YHQNQSQKNYYYHLNLSQ---NYYYHQNLSQNYYYHQN 1231
+ + N+ NL+ Y++ S + N
Sbjct: 367 VFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLN 418
Score = 44.7 bits (104), Expect = 2e-04
Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 32/211 (15%)
Query: 990 IGQNYYFHQNQSQNYYYHQNLSQ------------NYYYHQNLSLKYYCRRNLSQNYYCH 1037
IG +++ S + N++ Y N L Y+ N ++
Sbjct: 399 IGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGP 458
Query: 1038 QNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCR---RNLSQN 1094
+ L++ N ++ S + CR R
Sbjct: 459 TEE-------RLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCV 511
Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQ--- 1151
+C+ + + + + Q + N S + ++
Sbjct: 512 THCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGS---DTCAQCAHFRDGPHCVS 568
Query: 1152 --SQNYYYHQNQSQKYYYHQNLSQNCYYHQN 1180
+ KY QN + C H+N
Sbjct: 569 SCPHGVLGAKGPIYKYPDVQNECRPC--HEN 597
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat,
response regulator helix-turn-HELX binding, 3-helix
bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 49.4 bits (118), Expect = 5e-06
Identities = 29/260 (11%), Positives = 77/260 (29%), Gaps = 22/260 (8%)
Query: 989 EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
EI Q + + Y+ + + R Q +
Sbjct: 37 EIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQAR 96
Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQ-NYYYHQNLSLKYYCRRNLSQ--------NYYCHQ 1099
L YYF+ + + ++ + S + + + + Y +
Sbjct: 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM 156
Query: 1100 NQSQNYYYHQNQSQNYY--YHQNQSQKYYYHQNLSQNYYYHQNLSQ---NYYCHQNQSQN 1154
Q+ + Q+ Y + + H + N+ + ++ + ++
Sbjct: 157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216
Query: 1155 YYYHQNQSQKYYYHQNLSQNCYYHQNRSQN--YYYHQNLSQNYYYHQNQSQKNYYYHLNL 1212
Q + Y N+ C Q++ ++ Y+ + ++ + S Y+ +
Sbjct: 217 EKQPQLMGRTLY---NIG-LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF--LI 270
Query: 1213 SQNYYYHQNLSQNYYYHQNS 1232
+Q +Y + + + YH
Sbjct: 271 TQIHYKLGKIDKAHEYHSKG 290
Score = 47.9 bits (114), Expect = 2e-05
Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 13/213 (6%)
Query: 1023 KYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLS 1082
Y R ++ Y + + + Y+ + ++ + L
Sbjct: 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQ 80
Query: 1083 LKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQK--YYYHQNLS--QNYYYH 1138
+ YY++ + Y Q + ++ + S
Sbjct: 81 PRLSDLLLEIDKKQARLTGLLEYYFNFFRG-MYELDQREYLSAIKFFKKAESKLIFVKDR 139
Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQK--YYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYY 1196
++ ++ S YY+ Q+ Y Q + + H + N+
Sbjct: 140 IEKAEFFF---KMS-ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195
Query: 1197 YHQN--QSQKNYYYHLNLSQNYYYHQNLSQNYY 1227
+ + ++ ++++ Q + + Y
Sbjct: 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228
Score = 42.9 bits (101), Expect = 5e-04
Identities = 23/273 (8%), Positives = 88/273 (32%), Gaps = 42/273 (15%)
Query: 993 NYYFHQNQSQNYYYHQNLSQ-NYYYHQNLSLKYYCRRNLSQ--------NYYCHQNQSPN 1043
YYF+ + + ++ + S + + + + Y + Q+
Sbjct: 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYF 161
Query: 1044 NYYYH---LNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQN--LSLKYYCR-RNLSQNYYC 1097
+ Y + + + + + + + N+ + ++ ++ + ++++
Sbjct: 162 SMDYARQAYEIYKEHEAYNIRLLQCHS--LFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219
Query: 1098 HQNQSQNY------YYHQNQSQN--YYYHQ--NQSQKYYYHQNLSQNYYYHQNLSQNYYC 1147
Q + Q+Q ++ Y+ + ++ +L Q Y+ ++Q +Y
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF---LITQIHYK 276
Query: 1148 HQN--QSQNYY------YHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQ 1199
++ Y+ + Y ++ Y + + ++ +
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336
Query: 1200 NQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
+ + +++++ Y+ +N + Y
Sbjct: 337 DLED----FAIDVAKYYHERKNFQKASAYFLKV 365
Score = 42.5 bits (100), Expect = 7e-04
Identities = 29/313 (9%), Positives = 84/313 (26%), Gaps = 71/313 (22%)
Query: 973 YKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1032
+ + E + YY++ + +R
Sbjct: 62 HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS 121
Query: 1033 NYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQN---LSLKYY--- 1086
+ + +++ ++ +S YY+ S+ Y
Sbjct: 122 AIKFFKK--------AESKLIFVKDRIEKAEFFF---KMS-ESYYYMKQTYFSMDYARQA 169
Query: 1087 ----------------CRRNLSQNYYCHQN--QSQNYY-----------YHQNQSQNY-- 1115
C + N+ + + +++ Q +
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229
Query: 1116 ----YYHQNQSQK--YYYHQNLS--QNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQK--Y 1165
Q+Q + Y+ + ++ + +L Q Y+ + +Y + K
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF---LIT-QIHYKLGKIDKAHE 285
Query: 1166 YYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQ--KNYYYHLNLSQNYYYHQNLS 1223
Y+ + ++ Y + Y ++ Y + + ++ L Y ++ +
Sbjct: 286 YHSKGMA---YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342
Query: 1224 QN---YYYHQNSF 1233
+ YY+ + +F
Sbjct: 343 IDVAKYYHERKNF 355
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 49.4 bits (117), Expect = 5e-06
Identities = 23/231 (9%), Positives = 49/231 (21%), Gaps = 28/231 (12%)
Query: 1008 QNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYY 1067
+S NY + + P +N NY
Sbjct: 132 DAVSNNYIVGNK------PPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMC 185
Query: 1068 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQ-----SQNYYYHQNQS 1122
+ N C + S + +YY+ N Y +
Sbjct: 186 PSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWR 245
Query: 1123 QKYYY--------HQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN 1174
+ S+ + H C Q + + +QS +
Sbjct: 246 CVDRDFCANILSAESSDSEGFVIHDG-----ECMQECPSGFIRNGSQSMYCIPCEGPCPK 300
Query: 1175 CYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQN 1225
+ +++ + Q + +N+ + L
Sbjct: 301 VCEEEKKTKTIDS----VTSAQMLQGCTIFKGNLLINIRRGNNIASELENF 347
Score = 47.9 bits (113), Expect = 1e-05
Identities = 22/235 (9%), Positives = 49/235 (20%), Gaps = 31/235 (13%)
Query: 1010 LSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQ 1069
+N L Y + S NNY + +
Sbjct: 107 TRGAIRIEKNADLCYLSTVDWSLILDA----VSNNYIVGNKPPKECGDLCPGT--MEEKP 160
Query: 1070 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNY------YYHQNQSQ 1123
+ ++ Y C C + N+ + N +
Sbjct: 161 MCEKTTINNEY---NYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTA 217
Query: 1124 ----KYYYHQNL-----SQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN 1174
++YY+ + N Y + + + + + Q
Sbjct: 218 CVACRHYYYAGVCVPACPPNTYRFEG-WRCVDRDFCANILSAESSDSEGFVIHDGECMQE 276
Query: 1175 C---YYH---QNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLS 1223
C + Q+ + ++ + L + NL
Sbjct: 277 CPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLL 331
Score = 38.3 bits (88), Expect = 0.014
Identities = 18/222 (8%), Positives = 43/222 (19%), Gaps = 46/222 (20%)
Query: 998 QNQSQNYYYHQNLSQNYYYHQ---------------NLSLKYYCRRNLSQNYYCHQNQSP 1042
S NY + N Y C C
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK 191
Query: 1043 NNYYY-----HLNLSQN--------------YYFHQNQ-----SQNYYYHQNLSQNYYYH 1078
H + +Y++ N Y + +
Sbjct: 192 RACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEG-WRCVDRD 250
Query: 1079 QNLSLKYYCRRNLSQNYYCHQNQ-----SQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQ 1133
++ + S+ + H + + + +QS + K + ++
Sbjct: 251 FCANILSAESSD-SEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTK 309
Query: 1134 NYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNC 1175
+ C + + + +N
Sbjct: 310 TIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLI 351
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 49.3 bits (116), Expect = 7e-06
Identities = 21/156 (13%), Positives = 34/156 (21%)
Query: 491 PKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLP 550
+P P + PPK P + + S P P P L
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 551 PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLL 610
E P P P + + P +P + + + I
Sbjct: 73 SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132
Query: 611 PPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEP 646
+ + E P + P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168
Score = 48.6 bits (114), Expect = 1e-05
Identities = 21/156 (13%), Positives = 34/156 (21%)
Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLP 540
+P P + PPK P +P + P + P P L
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 541 PKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILI 600
+ P+ P K K P + L + + +
Sbjct: 73 SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132
Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEP 636
L + E P + P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168
Score = 47.4 bits (111), Expect = 2e-05
Identities = 23/156 (14%), Positives = 35/156 (22%)
Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
+P P + PPK P +P K PP P L +
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
P P+ P + + P +P L + + I
Sbjct: 73 SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132
Query: 651 PPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEP 686
L + E P + P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168
Score = 45.9 bits (107), Expect = 8e-05
Identities = 22/156 (14%), Positives = 37/156 (23%)
Query: 511 PKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLL 570
+ P + PPK P +P P P + P + +L L
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
S P P+ P + + P +P L + + I
Sbjct: 73 SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132
Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEP 666
+ + E P + P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/147 (12%), Positives = 28/147 (19%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
PPK P +P P P L E
Sbjct: 22 PPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPS 81
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
P+ P + K P +P L + + + +
Sbjct: 82 TPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALK 141
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEP 626
+ E P + P
Sbjct: 142 ASAQDAGESCTPEAEGRPEEPCGEKAP 168
Score = 38.2 bits (87), Expect = 0.016
Identities = 21/182 (11%), Positives = 38/182 (20%), Gaps = 1/182 (0%)
Query: 572 PKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELL-L 630
+P + PPK P +P P P P L L
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLL 690
P P+ P + + P +P L + + +
Sbjct: 73 SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132
Query: 691 PPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEP 750
+ + + +K P VL + +
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYKYQV 192
Query: 751 VL 752
+
Sbjct: 193 LA 194
Score = 35.5 bits (80), Expect = 0.12
Identities = 18/144 (12%), Positives = 27/144 (18%), Gaps = 4/144 (2%)
Query: 562 PKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEP----ELLLPPKPEPE 617
P P P L P P + P L L
Sbjct: 20 IAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSS 79
Query: 618 ILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPE 677
P P+ P + + P +P L + + +
Sbjct: 80 PSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRA 139
Query: 678 LLLPPKPEPELLLPPKPETITTTK 701
L + E P
Sbjct: 140 LKASAQDAGESCTPEAEGRPEEPC 163
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus
assembly, outer-membrane, cell adhesion-T
protein-chaperone complex; 2.80A {Escherichia coli} PDB:
3ohn_A 1zdv_A
Length = 843
Score = 49.2 bits (117), Expect = 9e-06
Identities = 27/195 (13%), Positives = 65/195 (33%), Gaps = 33/195 (16%)
Query: 1058 HQNQSQNYYYHQNLSQNYYYHQNLSLKYYCR--RNLSQNYYCHQN----QSQNYYYHQNQ 1111
H QS + Y+++L+++ Q + +Y N + Y N ++Q+
Sbjct: 409 HDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKP 468
Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
YY+ +++ ++Q L + S Y+ + + +
Sbjct: 469 KFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG------SHQTYWGTSNVDEQF----- 517
Query: 1172 SQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLS-----------QNYYYHQ 1220
Q N+ LS + + Q ++ LN++ ++ + H
Sbjct: 518 -QAGLNTAFEDINW----TLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 572
Query: 1221 NLSQNYYYHQNSFTS 1235
+ S + + N +
Sbjct: 573 SASYSMSHDLNGRMT 587
Score = 47.2 bits (112), Expect = 3e-05
Identities = 31/258 (12%), Positives = 69/258 (26%), Gaps = 43/258 (16%)
Query: 997 HQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYY 1056
H QS + Y+++L++ N+ L Y R + Y+ + + + + +Q+
Sbjct: 409 HDGQSVRFLYNKSLNE---SGTNIQLVGY--RYSTSGYFNFADTTYSRMNGYNIETQDGV 463
Query: 1057 FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYY 1116
YY N Y++ L+ ++Q + S Y
Sbjct: 464 IQVKPKFTDYY------NLAYNKRGKLQL----TVTQQLGRTSTLYLSG------SHQTY 507
Query: 1117 YHQNQSQKYY--YHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQ------NQSQKYYYH 1168
+ + + + ++ + + S Q + +
Sbjct: 508 WGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKS 567
Query: 1169 QNLSQNCYYHQNRSQNYYYHQNLS--------QNYYY-----HQNQSQKNYYYHLNLSQN 1215
Q + Y + N N Y + N + N
Sbjct: 568 QWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLN 627
Query: 1216 YYYHQ-NLSQNYYYHQNS 1232
Y N + Y + +
Sbjct: 628 YRGGYGNANIGYSHSDDI 645
Score = 42.2 bits (99), Expect = 0.001
Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 44/222 (19%)
Query: 1037 HQNQSPN----NYYYHLNLSQNYYFHQNQSQNYYYHQ-NLSQNYYYHQNLSLKYYCRRNL 1091
Q + P + L Y + Y + +N LS+ ++
Sbjct: 343 AQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSV------DM 396
Query: 1092 SQNYYCHQNQSQNYYYHQNQSQNYYYHQN---------------QSQKYY-YHQNLSQNY 1135
+Q + SQ H QS + Y+++ + Y+ +
Sbjct: 397 TQANSTLPDDSQ----HDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRM 452
Query: 1136 YYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN---------CYYHQNRSQNYY 1186
+ +Q+ YY+ +++ ++Q H Q Y+
Sbjct: 453 NGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSH----QTYW 508
Query: 1187 YHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYY 1228
N+ + + N + ++ + L+ S Q
Sbjct: 509 GTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLA 550
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 47.8 bits (113), Expect = 2e-05
Identities = 22/115 (19%), Positives = 27/115 (23%), Gaps = 3/115 (2%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
P P + L PP P P P P P +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVP---DPAPPPPPAPAAGNPPDTVTG 67
Query: 641 PPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
+ L P P + L P P P + P L P PE
Sbjct: 68 DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122
Score = 46.7 bits (110), Expect = 4e-05
Identities = 23/125 (18%), Positives = 30/125 (24%), Gaps = 8/125 (6%)
Query: 563 KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPP 622
L+P P + L PP P P P P
Sbjct: 8 HHHSSGLVPRGSH-----MVIPSASVTSAASDFLAALHPPVTVP---DPAPPPPPAPAAG 59
Query: 623 KPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPP 682
P + + + P P L P P P + P L P
Sbjct: 60 NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119
Query: 683 KPEPE 687
PEP+
Sbjct: 120 VPEPD 124
Score = 45.1 bits (106), Expect = 1e-04
Identities = 18/126 (14%), Positives = 26/126 (20%), Gaps = 4/126 (3%)
Query: 542 KPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP 601
L+P P + P+P PP P
Sbjct: 8 HHHSSGLVPRGSHMV----IPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63
Query: 602 PKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLP 661
+L P P + +P PE P +P + P
Sbjct: 64 TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123
Query: 662 LKPEPE 667
E
Sbjct: 124 DPVRVE 129
Score = 44.4 bits (104), Expect = 2e-04
Identities = 20/125 (16%), Positives = 28/125 (22%), Gaps = 11/125 (8%)
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELI 589
P ++ P + L PP P P P PP P
Sbjct: 13 GLVPRGSHMVIPSASVT---SAASDFLAALHPPVTVP---DPAPPP-----PPAPAAGNP 61
Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELL 649
+L P P + +P PE P +P +
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 650 LPPKP 654
P
Sbjct: 122 EPDPV 126
Score = 44.4 bits (104), Expect = 2e-04
Identities = 18/128 (14%), Positives = 26/128 (20%), Gaps = 3/128 (2%)
Query: 550 PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELL 609
L+P P P+P PP P
Sbjct: 5 HHHHHHSSGLVPRGSHMV---IPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 610 LPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEIL 669
+L P P + +P PE P + +P +
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 670 LPPKPEPE 677
P E
Sbjct: 122 EPDPVRVE 129
Score = 42.1 bits (98), Expect = 0.001
Identities = 25/139 (17%), Positives = 33/139 (23%), Gaps = 15/139 (10%)
Query: 305 PETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTK 364
P+ + P+ S + P V P P P P P
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPD---------PAPP-PPPAPAAGN 60
Query: 365 PQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQL-- 422
P V + Q + PT P + P L
Sbjct: 61 PP-DTVTGDSVLQ-RILRGPTGPG-TTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117
Query: 423 PEVPEPTKPELPEVPELTK 441
VPEP + EV K
Sbjct: 118 HPVPEPDPVRVEEVSRRIK 136
Score = 41.3 bits (96), Expect = 0.002
Identities = 15/104 (14%), Positives = 22/104 (21%), Gaps = 3/104 (2%)
Query: 593 KPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 652
L+P + P P+P PP P
Sbjct: 8 HHHSSGLVPRGSHM---VIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64
Query: 653 KPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPET 696
+L + P P + +P PE P
Sbjct: 65 VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAA 108
Score = 40.9 bits (95), Expect = 0.002
Identities = 20/119 (16%), Positives = 27/119 (22%), Gaps = 1/119 (0%)
Query: 500 PPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLL 559
P + L PP P+ PP P P PP +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 560 LPP-KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPE 617
L P + +P PE P +P + P E
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129
Score = 40.5 bits (94), Expect = 0.003
Identities = 22/121 (18%), Positives = 29/121 (23%), Gaps = 10/121 (8%)
Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL 579
P P + L PP P P P P P +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVP----DPAPPPPPAPAAGNPPDTVT 66
Query: 580 LPPKPEPELIIPPKP---EPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEP 636
+ L P P + +P P P + P L P PEP
Sbjct: 67 GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPA---AGRAVPGLYHHPVPEP 123
Query: 637 E 637
+
Sbjct: 124 D 124
Score = 40.5 bits (94), Expect = 0.003
Identities = 23/120 (19%), Positives = 30/120 (25%), Gaps = 8/120 (6%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPP--KPEPEL 537
P P + L PP P PP P PP +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 538 LLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPE 597
L P P +P P+ P + +P L P PEP+
Sbjct: 71 LQRILRGPTGPGTTSLAPAV-RYGRQPGPEAPASAPPAAGRAVPG-----LYHHPVPEPD 124
Score = 40.5 bits (94), Expect = 0.003
Identities = 20/121 (16%), Positives = 31/121 (25%), Gaps = 8/121 (6%)
Query: 448 PEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPEL 507
+ + D + PP P+ PP P P PP
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Query: 508 LLPPKLEPKLLLPPKSEPELLLPPK--PEPELLLPPKPKPELLLPPKPEPEKLLLPPKPK 565
+ ++ P + + P PE P +P L P P+
Sbjct: 69 SVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG------LYHHPVPE 122
Query: 566 P 566
P
Sbjct: 123 P 123
Score = 37.4 bits (86), Expect = 0.027
Identities = 16/128 (12%), Positives = 27/128 (21%), Gaps = 11/128 (8%)
Query: 500 PPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLL 559
+ + + + L P + P P P P
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT--- 64
Query: 560 LPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEIL 619
+ P P + +P P P + P +
Sbjct: 65 -VTGDSVLQRILRGPTG----PGTTSLAPAVRYGRQPGPEAPASAPPA---AGRAVPGLY 116
Query: 620 LPPKPEPE 627
P PEP+
Sbjct: 117 HHPVPEPD 124
Score = 36.7 bits (84), Expect = 0.051
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 10/116 (8%)
Query: 474 KKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPK- 532
+ ++ P L PP P+ PP P PP + + +
Sbjct: 17 RGSHMVIPSASVTSAASDFLAA--LHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRI 74
Query: 533 -PEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPE 587
P P + +P PE P P +P L P PEP+
Sbjct: 75 LRGPTGPGTTSLAPAVRYGRQPGPEAPASAP-PAAGRAVPG-----LYHHPVPEPD 124
Score = 33.2 bits (75), Expect = 0.61
Identities = 19/123 (15%), Positives = 30/123 (24%), Gaps = 6/123 (4%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKS-QLPEVPEPTKP--QLPEVLE 339
+ + P+ + P V P + P P P +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
+ T P +P PE P P + L PEP +
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGRQP-GPEAPASAPPAAGRAVPG--LYHHPVPEPDPVR 127
Query: 400 LPE 402
+ E
Sbjct: 128 VEE 130
Score = 30.1 bits (67), Expect = 4.6
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 8/71 (11%)
Query: 633 KPEPEILLPPKPEPELLLPPKPE-----SELLLPLKPEPEILLPPKPEPELLLPPKPEPE 687
L+P + P S+ L L P + P P P P
Sbjct: 8 HHHSSGLVPRGSHM---VIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64
Query: 688 LLLPPKPETIT 698
+ + I
Sbjct: 65 VTGDSVLQRIL 75
>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex, bacter
toxin; HET: GLA GAL NAG; 2.00A {Clostridium difficile}
Length = 255
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/227 (11%), Positives = 59/227 (25%), Gaps = 71/227 (31%)
Query: 1057 FHQNQSQNYYYHQNLSQ-----------NYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNY 1105
+ YY++ N ++ YY++ N +++ Y +++
Sbjct: 7 MRTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTN--------TSIASTGY-TIINDKHF 57
Query: 1106 YYHQN----------QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYC-------- 1147
Y++ + Y+ + + L N Y
Sbjct: 58 YFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAA 117
Query: 1148 ---HQNQSQNYYYHQNQSQ----------KYYYHQNLSQNCYYHQNRSQNYYY------H 1188
+ YY+ N + K +Y +N + + Y+
Sbjct: 118 TGWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDA 177
Query: 1189 QNLSQNYYYHQNQSQK--NYYYHLNLS------------QNYYYHQN 1221
N+ +QN+ Y+ + YY+ +
Sbjct: 178 NNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPD 224
Score = 45.9 bits (109), Expect = 4e-05
Identities = 32/254 (12%), Positives = 61/254 (24%), Gaps = 54/254 (21%)
Query: 991 GQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLN 1050
G+ YYF+ N ++ Q + YY N + + N+ +++ N
Sbjct: 12 GKKYYFNTNTAEAATGWQTIDGKKYY-----------FNTNTSIASTGYTIINDKHFYFN 60
Query: 1051 LSQNYYFHQNQSQ----NYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC--------- 1097
+ + Y+ + L N Y
Sbjct: 61 --TDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAAT 118
Query: 1098 --HQNQSQNYYYHQN-----------QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
+ YY+ N ++N+Y+ Q + Y+ N N
Sbjct: 119 GWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDAN 178
Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQN-------LSQNCYYHQNRSQNYYYHQNLSQNYYY 1197
Q + YY+ N + N YY+ + +
Sbjct: 179 NIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTIN-------GNMYYFMPD-TAMAAA 230
Query: 1198 HQNQSQKNYYYHLN 1211
Y
Sbjct: 231 GGLFEIDGVIYFFG 244
Score = 45.5 bits (108), Expect = 4e-05
Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 33/167 (19%)
Query: 1098 HQNQSQNYYYHQNQSQNYY-YHQNQSQKYYYHQN--LSQNYYYHQNLSQNYYCHQN---- 1150
+ YY++ N ++ + +KYY++ N ++ Y N +++Y + +
Sbjct: 8 RTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTNTSIASTGYTIIN-DKHFYFNTDGIMQ 66
Query: 1151 ------QSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNL-----------SQ 1193
Y+ + + N YY N +
Sbjct: 67 IGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAATGWVTIDGR 126
Query: 1194 NYYYHQN--------QSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
YY+ N + N ++ + Y +
Sbjct: 127 RYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPA 173
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 46.8 bits (110), Expect = 3e-05
Identities = 34/176 (19%), Positives = 44/176 (25%), Gaps = 13/176 (7%)
Query: 285 EPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQ 344
+ E I P++ VP KSQL E P K L L+
Sbjct: 187 QLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLE 246
Query: 345 LPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPE-- 402
+ P P P + P P PE
Sbjct: 247 TFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYG----PGSSGTWNPGRPEPG 302
Query: 403 -----DPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKP 453
+P +P P + + P P PE P T P PEP
Sbjct: 303 SAGTWNPGRPEPGSAGTWNPGRPE-PGSAGTWNPGRPE-PGSAGTWNPGRPEPGSA 356
Score = 36.0 bits (82), Expect = 0.069
Identities = 27/161 (16%), Positives = 37/161 (22%), Gaps = 11/161 (6%)
Query: 541 PKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILI 600
P + L K +P + K +L P LL + + L
Sbjct: 198 PSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGD 257
Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLL 660
L +P P P P +PEP P
Sbjct: 258 SVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWN--PGRPEPGSAGTWNPGR---- 311
Query: 661 PLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTK 701
PEP P P P+P + T
Sbjct: 312 ---PEPGS--AGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 347
Score = 35.2 bits (80), Expect = 0.11
Identities = 27/197 (13%), Positives = 42/197 (21%), Gaps = 7/197 (3%)
Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLP 540
P +I P + + P P + + + + ++ +
Sbjct: 196 LLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHAR 255
Query: 541 PKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKP-EPEIL 599
+ P K S P +PEP P PE
Sbjct: 256 GDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPG 315
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
P P P +PEP P P S
Sbjct: 316 SAGTWNPGRPEPGSAGTWN--PGRPEPGSAGTWNPGR----PEPGSAGTWNTGSSGSSSF 369
Query: 660 LPLKPEPEILLPPKPEP 676
P + P P+
Sbjct: 370 RPDSSGHGNIRPSSPDW 386
Score = 34.8 bits (79), Expect = 0.15
Identities = 30/208 (14%), Positives = 42/208 (20%), Gaps = 13/208 (6%)
Query: 389 LPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP 448
+ + P++ VP K QL E P L E+ +
Sbjct: 192 IAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAP-LEWKALLEMQQTKMVLETFGG 250
Query: 449 EPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELL 508
+ + P K P P P +PEP
Sbjct: 251 DGHARGDSVSQGT----GLAPGSPRKPGTSSIGNVNPGSYGPGSSGTW--NPGRPEPG-- 302
Query: 509 LPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKL 568
P P + P+P P P P
Sbjct: 303 SAGTWNPGRPEPGSAGTWNPGRPEPGS----AGTWNPGRPEPGSAGTWNPGRPEPGSAGT 358
Query: 569 LLPPKPESELLLPPKPEPELIIPPKPEP 596
S P I P P+
Sbjct: 359 WNTGSSGSSSFRPDSSGHGNIRPSSPDW 386
Score = 34.5 bits (78), Expect = 0.22
Identities = 25/157 (15%), Positives = 36/157 (22%), Gaps = 5/157 (3%)
Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
P + + L K P+ +L P LL + + L
Sbjct: 198 PSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGD 257
Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPP-KPEPELL 649
+ +P P P P+P P +PEP
Sbjct: 258 SVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSA 317
Query: 650 LPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEP 686
P P P +PEP P
Sbjct: 318 GTWNPGR----PEPGSAGTWNPGRPEPGSAGTWNPGR 350
Score = 34.1 bits (77), Expect = 0.29
Identities = 28/180 (15%), Positives = 40/180 (22%), Gaps = 8/180 (4%)
Query: 521 PKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLL 580
P + + L K P+ L E + LL + K L
Sbjct: 198 PSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGD 257
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKP----EP 636
L +P P P P+P P
Sbjct: 258 SVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSA 317
Query: 637 EILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPET 696
P +PEP P P P +PEP +P++
Sbjct: 318 GTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDS 373
Score = 33.3 bits (75), Expect = 0.45
Identities = 32/217 (14%), Positives = 46/217 (21%), Gaps = 18/217 (8%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
+ LLP + L + +P + + +L P LL + + L
Sbjct: 188 LEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLET 247
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
P KP P P +PEP
Sbjct: 248 FGGDGHARGDSVSQGTGLAPGSP-RKPGTSSIGNVNPGSYGPGSSGTW--NPGRPEPGSA 304
Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
P P+P P P P +PEP P
Sbjct: 305 GTWNPG-----RPEPGS----AGTWNPGRPEPGSAGTWN--PGRPEPGSAGTWNPGR--- 350
Query: 660 LPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPET 696
P P + P P+
Sbjct: 351 -PEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDW 386
Score = 33.3 bits (75), Expect = 0.55
Identities = 25/201 (12%), Positives = 36/201 (17%), Gaps = 10/201 (4%)
Query: 426 PEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEP 485
P++ T VP K Q+ + + E
Sbjct: 196 LLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHAR 255
Query: 486 EILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKP 545
+ P KP + P +PEP P
Sbjct: 256 GDSVSQGTGLAPGSPRKPGTSSIGNVNPGS----YGPGSSGTWNPGRPEPG--SAGTWNP 309
Query: 546 ELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPE 605
P P P +PE P P
Sbjct: 310 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNTGSSG 365
Query: 606 PELLLPPKPEPEILLPPKPEP 626
P + P P+
Sbjct: 366 SSSFRPDSSGHGNIRPSSPDW 386
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 46.9 bits (110), Expect = 3e-05
Identities = 25/233 (10%), Positives = 53/233 (22%), Gaps = 30/233 (12%)
Query: 1026 CRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNL------SQNYYYHQ 1079
N + YY + +P + S + +N L + Y
Sbjct: 145 IVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGP 204
Query: 1080 NLSLK--YYCR--------------RNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQ 1123
+C +N C + Y+ N
Sbjct: 205 KPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYV---LETNPEG 261
Query: 1124 KYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY-YHQNRS 1182
KY Y + H L N C ++ Q+ + + +
Sbjct: 262 KYAYGATCVKECPGHL-LRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGN 320
Query: 1183 QNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS 1235
+ + + + +Q+ + + NY F++
Sbjct: 321 IDSFRNCTVIDGNIRILDQTFSGFQD---VYANYTMGPRYIPLDPERLEVFST 370
Score = 43.8 bits (102), Expect = 3e-04
Identities = 25/254 (9%), Positives = 55/254 (21%), Gaps = 37/254 (14%)
Query: 994 YYFHQNQ-----SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
+F + Y+ N KY C + + +
Sbjct: 231 NFFDEGVCKEECPPMRKYNPTTYV---LETNPEGKYAYGAT------CVKECPGHLLRDN 281
Query: 1049 ----LNLSQNYYFH---QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQ 1101
+ Q+ + N+ C Q
Sbjct: 282 GACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTF 341
Query: 1102 SQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYY------HQNLSQNYYCHQNQSQNY 1155
S + N + Y ++ + + Y H N +N +
Sbjct: 342 SGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFR-NLSYFRN-LETI 399
Query: 1156 YYHQNQSQKYYYHQNLSQNCYYHQNRSQ------NYYYHQNLSQNYYYHQN--QSQKNYY 1207
+ Q + + + Y + R+ + N Y + QK
Sbjct: 400 HGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPE 459
Query: 1208 YHLNLSQNYYYHQN 1221
+ +++N
Sbjct: 460 QKVWVNENLRADLC 473
Score = 40.8 bits (94), Expect = 0.003
Identities = 15/261 (5%), Positives = 48/261 (18%), Gaps = 48/261 (18%)
Query: 996 FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNY 1055
Y Y + + S + C Q + +
Sbjct: 146 VSNGTDAYYNYDFTAPERECPKCHESCTHGC-----WGEGPKNCQKFSKLTCSPQCAGGR 200
Query: 1056 YFHQNQSQ---------------------NYYYHQNL-----SQNYYYHQNLSLKYYCRR 1089
+ + ++ + + Y+ Y
Sbjct: 201 CYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPT----TYVLE 256
Query: 1090 NLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQS-----QKYYYHQNLSQNYYYHQNLSQN 1144
+ Y + + + N + + +
Sbjct: 257 TNPEGKYAYGATCVK------ECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTC 310
Query: 1145 YY--CHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQS 1202
+ + + + + + + + + +
Sbjct: 311 PGVTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFST 370
Query: 1203 QKNYYYHLNLSQNYYYHQNLS 1223
K +LN+ + +NLS
Sbjct: 371 VKEITGYLNIEGTHPQFRNLS 391
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 46.9 bits (110), Expect = 4e-05
Identities = 20/252 (7%), Positives = 45/252 (17%), Gaps = 13/252 (5%)
Query: 993 NYYFHQNQ-----SQNYYYHQNLSQ-----NYYYHQNLSLKYYCRRNLSQNYYCHQNQSP 1042
+ + Y+ Q Y + C RN + ++
Sbjct: 228 RKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRAC 287
Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
Y + + + + + + +
Sbjct: 288 GADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHI 347
Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQS 1162
+ + + Q + Q +N
Sbjct: 348 LPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTK 407
Query: 1163 QKYYYHQ-NLSQNCYYHQNRSQNYYYHQNL--SQNYYYHQNQSQKNYYYHLNLSQNYYYH 1219
Q + +S N RS ++ S N + Q
Sbjct: 408 QHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKII 467
Query: 1220 QNLSQNYYYHQN 1231
N +N
Sbjct: 468 SNRGENKCKATG 479
Score = 43.9 bits (102), Expect = 3e-04
Identities = 15/222 (6%), Positives = 44/222 (19%), Gaps = 5/222 (2%)
Query: 1013 NYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLS 1072
Y C++ + L+++ H + ++
Sbjct: 289 ADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHIL 348
Query: 1073 QNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYY-YHQNQSQKYYYHQNL 1131
+ + + + + + Q +N H ++ + +
Sbjct: 349 PVAFRGDSFT-HTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTK 407
Query: 1132 SQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNC---YYHQNRSQNYYYH 1188
+ +S N +S + + + Q
Sbjct: 408 QHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKII 467
Query: 1189 QNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQ 1230
N +N Q +N +
Sbjct: 468 SNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGR 509
Score = 34.2 bits (77), Expect = 0.32
Identities = 19/237 (8%), Positives = 50/237 (21%), Gaps = 32/237 (13%)
Query: 1008 QNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYY 1067
+ + + C++ C PN + +
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQK-------CD-PSCPNGSCWGAGEENCQKLTKIICAQQCS 196
Query: 1068 HQNLSQNYYYHQNLSLKYYCR----------RNLSQNYYCHQNQSQNYYYHQNQSQNYYY 1117
+ ++ + C R C Y+ Q
Sbjct: 197 GRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMD-- 254
Query: 1118 HQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNC-- 1175
N KY + + +NY + + Y ++ + C
Sbjct: 255 -VNPEGKYSFGAT------CVKKCPRNYVVTDH---GSCVRACGADSYEMEEDGVRKCKK 304
Query: 1176 YYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
R ++ + K++ ++S + + + +
Sbjct: 305 CEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTP 361
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 46.1 bits (108), Expect = 7e-05
Identities = 19/201 (9%), Positives = 41/201 (20%), Gaps = 33/201 (16%)
Query: 1008 QNLSQNYY--YHQNLSLKYYCRRNL---SQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQS 1062
+ L Y Q L + R+L + + + + Q +N
Sbjct: 413 RILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVPWDQ---LFRNPH 469
Query: 1063 QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQS 1122
Q + N + + L C Q + +++ +
Sbjct: 470 QALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWKGL 529
Query: 1123 QKYYYHQN---------------------LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQ 1161
+ Y + + + C +
Sbjct: 530 PREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAHYKDSSSCVARCPSGVKPDLSY 589
Query: 1162 SQKYYYHQNLS--QNCYYHQN 1180
+ Y Q C N
Sbjct: 590 MPIWKYPDEEGICQPC--PIN 608
Score = 39.6 bits (91), Expect = 0.007
Identities = 19/251 (7%), Positives = 51/251 (20%), Gaps = 30/251 (11%)
Query: 999 NQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLS-QNYYCHQNQSPNNYYYHLNLSQNYYF 1057
NQ N S+ +C +
Sbjct: 156 NQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCC 215
Query: 1058 HQ---------NQSQ----NYYYHQNL-----SQNYYYHQNLSLKYYCRRNLSQNYYCHQ 1099
H+ S ++ H + Y+ + + N + Y
Sbjct: 216 HEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTD---TFESMHN-PEGRYTFG 271
Query: 1100 NQSQ----NYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYY---CHQNQS 1152
Y +Q+ + + ++ Y +
Sbjct: 272 ASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRG 331
Query: 1153 QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNL 1212
N + + + ++ + + ++ + +L +
Sbjct: 332 ARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYI 391
Query: 1213 SQNYYYHQNLS 1223
S ++LS
Sbjct: 392 SAWPDSLRDLS 402
Score = 37.7 bits (86), Expect = 0.024
Identities = 19/264 (7%), Positives = 53/264 (20%), Gaps = 50/264 (18%)
Query: 1004 YYYHQNL-----SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFH 1058
++ H + Y+ + + N + Y Y+ ++
Sbjct: 236 HFNHSGICELHCPALVTYNTD---TFESMHN-PEGRYTFGASCVTTCPYNYLSTEVGSCT 291
Query: 1059 QNQSQNYYYHQN--------------------------LSQNYYYHQNLSLKYYCRRNLS 1092
N N+ C++
Sbjct: 292 LVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFG 351
Query: 1093 QNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQK----YYYHQNLSQNYYYHQNLSQNYYCH 1148
+ ++ + + ++ + Y Y +
Sbjct: 352 SLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRDLSVFQNLRIIR 411
Query: 1149 QNQSQNYYYH---QNQSQKYYYHQNL----SQNCYYHQNRSQNYYYHQNLSQNYYYHQNQ 1201
+ Y Q ++L S H+N + + + +
Sbjct: 412 GRILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVH----TVPWDQLFRN 467
Query: 1202 SQKNYYYHLNLSQNYYYHQNLSQN 1225
+ + N + + L N
Sbjct: 468 PHQALLHSGNRPEEDCGLEGLVCN 491
Score = 34.2 bits (77), Expect = 0.32
Identities = 10/159 (6%), Positives = 28/159 (17%), Gaps = 29/159 (18%)
Query: 993 NYYFHQNQSQNYYYHQNLS-------QNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNY 1045
H+N + + Q + N + L N C
Sbjct: 444 LALIHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPG 503
Query: 1046 YYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQN---------------------LSLK 1084
++ +++ + Y + +
Sbjct: 504 PTQC-VNCSHFLRGQECVEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQ 562
Query: 1085 YYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQ 1123
+ + C + + Y +
Sbjct: 563 CAACAHYKDSSSCVARCPSGVKPDLSYMPIWKYPDEEGI 601
Score = 32.7 bits (73), Expect = 0.89
Identities = 18/211 (8%), Positives = 47/211 (22%), Gaps = 13/211 (6%)
Query: 1036 CHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQN--YYYHQNLSLKYYCRRNLSQ 1093
+N N S+ ++ + ++ + +
Sbjct: 152 FRKNNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLP 211
Query: 1094 NYYCHQNQSQNYYYHQNQSQ----NYYYHQNQ-----SQKYYYHQNLSQNYYYHQN-LSQ 1143
CH+ Q S ++ H Y+ + ++ + + +
Sbjct: 212 TDCCHE-QCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTF 270
Query: 1144 NYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQ 1203
C NY + S N + + Y +
Sbjct: 271 GASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLR 330
Query: 1204 KNYYYHLNLSQNYYYHQNLSQNYYYHQNSFT 1234
+ Q + + + + + SF
Sbjct: 331 GARAITSDNVQEFDGCKKIFGSLAFLPESFD 361
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 45.9 bits (108), Expect = 1e-04
Identities = 32/294 (10%), Positives = 71/294 (24%), Gaps = 55/294 (18%)
Query: 911 ILFEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSPPEKPH-HSPIPPPPPVLNPPNS 969
+ + L + V + + N L+
Sbjct: 767 VPDQIYNLPGKEAVTVTRSDDHGTTWEVSPIKNVVYITNTIGGGEYQKKYGGEFLDTLQK 826
Query: 970 E--LVYKDKYTGVGGYFGAVPEIGQNYYFHQNQS------QNYYYHQNLSQNYYYHQNLS 1021
E ++ Y +I + + N + Y N YY
Sbjct: 827 EYPQLFSQVYPVTQTTIDPSVKIKEWSAKYFNGTNILHRGAGYVLRSN--DGKYY----- 879
Query: 1022 LKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQN--LSQNYYYHQ 1079
Q + ++ Y F + + +YY +N + ++ +
Sbjct: 880 ------------NLGTSTQQFLPSQLSVQDNEGYGFVKEGNNYHYYDENKQMVKDAFIQD 927
Query: 1080 NLSLKYYCRRNLS-----QNYYCHQNQSQNYYYHQNQS------------QNYYYHQNQS 1122
++ YY +N + N + Y N YYY +
Sbjct: 928 SVGNWYYLDKNGNMVANQSPVEISSNGASGTYLFLNNGTSFRSGLVKTDAGTYYYDGDGR 987
Query: 1123 QKYYYHQNLSQNYYYHQN---LSQNYYCHQNQSQNYYYHQNQS---QKYYYHQN 1170
+ Y L + + + + + QK+++H +
Sbjct: 988 MVRNQTVSDGAMTYVLDENGKLVSESF--DSSATEAHPLKPGDLNGQKHHHHHH 1039
Score = 38.9 bits (90), Expect = 0.011
Identities = 19/182 (10%), Positives = 44/182 (24%), Gaps = 21/182 (11%)
Query: 1070 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQ 1129
+ + + Y + Y Q + + Q +
Sbjct: 786 DDHGTTWEVSPIKNVVYITNTIGGGEY--QKKYGGEFLDTLQKEYPQLFSQVYPVTQTTI 843
Query: 1130 NLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN--LSQNCYYHQNRSQNYYY 1187
+ S N ++ Y N + Y + ++ Y +
Sbjct: 844 DPSVKIKEWSAKYFNGTNILHRGAGYVLRSNDGKYYNLGTSTQQFLPSQLSVQDNEGYGF 903
Query: 1188 HQNLSQNYYYHQN---------QSQKNYYYHLNLS-------QNYYYHQNLSQN-YYYHQ 1230
+ + +YY +N Q +Y+L+ + N + Y +
Sbjct: 904 VKEGNNYHYYDENKQMVKDAFIQDSVGNWYYLDKNGNMVANQSPVEISSNGASGTYLFLN 963
Query: 1231 NS 1232
N
Sbjct: 964 NG 965
>1ki0_A Angiostatin; kringle domains, hydrolase; HET: BCN; 1.75A {Homo
sapiens} SCOP: g.14.1.1 g.14.1.1 g.14.1.1 PDB: 2doh_X*
2doi_X 1cea_A 1ceb_A* 1b2i_A* 1pkr_A 2l0s_A 2kj4_A 1i5k_A
1hpj_A 1hpk_A*
Length = 253
Score = 44.4 bits (103), Expect = 1e-04
Identities = 25/202 (12%), Positives = 65/202 (32%), Gaps = 13/202 (6%)
Query: 1026 CRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQN--YYYHQNLSQNYYYHQNLSL 1083
C++ S + + + + L +NY + + + Y + + Y Y L
Sbjct: 25 CQKWSSTSPHRPRFSPAT--HPSEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILEC 82
Query: 1084 KYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQ 1143
+ C +NY +++ + Q + + ++NL +NY + +
Sbjct: 83 EEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDREL 142
Query: 1144 NYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQN--------- 1194
+C + + + + + +NY + ++ +
Sbjct: 143 RPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSA 202
Query: 1195 YYYHQNQSQKNYYYHLNLSQNY 1216
H ++ + NL +NY
Sbjct: 203 QTPHTHERTPENFPCKNLDENY 224
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 43.5 bits (102), Expect = 2e-04
Identities = 21/122 (17%), Positives = 35/122 (28%)
Query: 313 PEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPE 372
+ P +Q V T L P +P+ +P P + E P+
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Query: 373 PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
P P+ ++ + Q D +P + + E T P T V
Sbjct: 84 PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143
Query: 433 LP 434
Sbjct: 144 RA 145
Score = 43.2 bits (101), Expect = 3e-04
Identities = 21/123 (17%), Positives = 32/123 (26%)
Query: 532 KPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIP 591
EL P +P ++ P + P P+P + P+PE P + + P
Sbjct: 23 HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82
Query: 592 PKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLP 651
P K E E E KP +
Sbjct: 83 KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142
Query: 652 PKP 654
P+
Sbjct: 143 PRA 145
Score = 41.6 bits (97), Expect = 7e-04
Identities = 21/114 (18%), Positives = 30/114 (26%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
++ P EP + P PEP + P+PEP P + + P
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Query: 641 PPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKP 694
P K E E E KP + P+
Sbjct: 92 PVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 41.2 bits (96), Expect = 9e-04
Identities = 23/114 (20%), Positives = 32/114 (28%)
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
++ P EP + P PEP + P+PEP P + I P
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKP 684
P K E E E+ L KP + P+
Sbjct: 92 PVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 41.2 bits (96), Expect = 0.001
Identities = 17/118 (14%), Positives = 36/118 (30%)
Query: 529 LPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPEL 588
LP +P + P P + ++ P+P+P+ + P E+ +++
Sbjct: 28 LPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 87
Query: 589 IIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEP 646
P + P + + P E P + +P + P
Sbjct: 88 PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 41.2 bits (96), Expect = 0.001
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 4/132 (3%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQL 345
++ P +P + + PQ + P + PEP E
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
P+ KP +P + P P P P
Sbjct: 84 PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARL----TSSTATAATSKPVTSV 139
Query: 406 TTKPQLPEVPEP 417
+ P+ +P
Sbjct: 140 ASGPRALSRNQP 151
Score = 40.1 bits (93), Expect = 0.002
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 1/116 (0%)
Query: 561 PPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILL 620
P +P ++ P +P PE ++ P+PEPE + P E +++
Sbjct: 31 PAQPISVTMVTPADLEPPQ-AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 89
Query: 621 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEP 676
P + P + + P E P + S +P + P
Sbjct: 90 PKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 40.1 bits (93), Expect = 0.002
Identities = 15/101 (14%), Positives = 27/101 (26%)
Query: 354 PQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPE 413
+LP +P + + PQ + ++ +PEP E P + P+
Sbjct: 26 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 85
Query: 414 VPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
K +P + P P
Sbjct: 86 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSS 126
Score = 40.1 bits (93), Expect = 0.002
Identities = 28/130 (21%), Positives = 38/130 (29%), Gaps = 1/130 (0%)
Query: 583 KPEPELIIPPKP-EPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLP 641
EL P +P ++ P EP + P PEP + P+PEP P + I P
Sbjct: 23 HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82
Query: 642 PKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTK 701
P K E E E KP T +
Sbjct: 83 KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142
Query: 702 TLLLDKKEPV 711
L + +P
Sbjct: 143 PRALSRNQPQ 152
Score = 39.7 bits (92), Expect = 0.003
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 4/130 (3%)
Query: 476 EPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
E P +P ++ P P ++ P + PPK P ++ PKP+P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPE 595
PKPKP + +P+ + + +P + +
Sbjct: 87 ----KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142
Query: 596 PEILIPPKPE 605
P L +P+
Sbjct: 143 PRALSRNQPQ 152
Score = 39.7 bits (92), Expect = 0.003
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 4/126 (3%)
Query: 492 KPEPELLLPPKP-EPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLP 550
EL P +P ++ P LEP + P EP + P+PEP P PK ++
Sbjct: 23 HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPI---PEPPKEAPVVI 79
Query: 551 PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLL 610
KP+P+ P K P + + P E P + +P +
Sbjct: 80 EKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSV 139
Query: 611 PPKPEP 616
P
Sbjct: 140 ASGPRA 145
Score = 39.3 bits (91), Expect = 0.005
Identities = 17/129 (13%), Positives = 32/129 (24%)
Query: 368 PEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPE 427
+ P Q V T L P P +P+ P + E P+
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Query: 428 PTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEI 487
P P+ + + Q +P + + E +
Sbjct: 84 PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143
Query: 488 LLPPKPEPE 496
+ +P+
Sbjct: 144 RALSRNQPQ 152
Score = 38.9 bits (90), Expect = 0.005
Identities = 21/122 (17%), Positives = 35/122 (28%)
Query: 485 PEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPK 544
I LP +P + P P + +P P+ ++ KPK
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Query: 545 PELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKP 604
P+ PKP + P + + P E P + +P + P
Sbjct: 84 PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143
Query: 605 EP 606
Sbjct: 144 RA 145
Score = 38.9 bits (90), Expect = 0.006
Identities = 13/118 (11%), Positives = 29/118 (24%)
Query: 519 LPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESEL 578
LP ++P + P P + + + P + +++
Sbjct: 28 LPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 87
Query: 579 LLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEP 636
P + P + + P E P + +P + P
Sbjct: 88 PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 37.0 bits (85), Expect = 0.021
Identities = 17/109 (15%), Positives = 26/109 (23%)
Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
+ T + P Q P P PE + + P E KP+ P+
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
K + K P + P + T
Sbjct: 92 PVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140
Score = 35.5 bits (81), Expect = 0.078
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 5/144 (3%)
Query: 444 LPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKP 503
+P + Q+++ P V EP +P PE ++ P+PEPE + P
Sbjct: 14 VPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 73
Query: 504 EPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPK 563
E P + K PK +P+ + + +P+ + P P +L
Sbjct: 74 E-----APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTA 128
Query: 564 PKPKLLLPPKPESELLLPPKPEPE 587
S + +P+
Sbjct: 129 TAATSKPVTSVASGPRALSRNQPQ 152
Score = 35.1 bits (80), Expect = 0.11
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 5/119 (4%)
Query: 300 ELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPED 359
ELP + + + Q + P P PE +P P + E
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQ-PPPEPVVEPEPEPEP----IPEPPKEAPVVIEK 81
Query: 360 PEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPT 418
P+P P+ + + Q ++P + + E T P T V
Sbjct: 82 PKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140
Score = 34.7 bits (79), Expect = 0.14
Identities = 17/113 (15%), Positives = 28/113 (24%)
Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT 342
P + E + P P PE P+ P+ + P+P + +V E
Sbjct: 42 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 101
Query: 343 LQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEP 395
+ +KP P L + P
Sbjct: 102 RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYP 154
Score = 34.7 bits (79), Expect = 0.15
Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 3/132 (2%)
Query: 596 PEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPE 655
I +P +P + P P + P EPE P PEP P E
Sbjct: 24 QVIELPAPAQPISVTMVTPADL---EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 80
Query: 656 SELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDK 715
P + + + P + P T+ T +PV
Sbjct: 81 KPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140
Query: 716 KEPVLLDKKEPV 727
P L + +P
Sbjct: 141 SGPRALSRNQPQ 152
Score = 34.3 bits (78), Expect = 0.17
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 2/98 (2%)
Query: 282 KPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPT 341
+P + TP EP + P +P+ P P E P + P+
Sbjct: 33 QPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP--KEAPVVIEKPKPKPKPKP 90
Query: 342 TLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLP 379
+P + P + P P P
Sbjct: 91 KPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTA 128
Score = 33.9 bits (77), Expect = 0.22
Identities = 19/132 (14%), Positives = 37/132 (28%)
Query: 414 VPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLD 473
VP + + + +V E P P + E P+ +P EP + P
Sbjct: 14 VPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 73
Query: 474 KKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKP 533
+ V+ P + P + + P + P +
Sbjct: 74 EAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATS 133
Query: 534 EPELLLPPKPKP 545
+P + P+
Sbjct: 134 KPVTSVASGPRA 145
Score = 33.9 bits (77), Expect = 0.24
Identities = 22/117 (18%), Positives = 33/117 (28%)
Query: 379 PEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPE 438
L P + P + T ++ P +Q P P PE
Sbjct: 10 SSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIP 69
Query: 439 LTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEP 495
+ P V E KP+ K +PV +++P K P P
Sbjct: 70 EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSS 126
Score = 31.2 bits (70), Expect = 1.6
Identities = 16/99 (16%), Positives = 27/99 (27%)
Query: 281 KKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
+ EPE + +PEP K+ + + P+ K Q + +
Sbjct: 56 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPF 115
Query: 341 TTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLP 379
T P + P +PQ P
Sbjct: 116 ENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYP 154
Score = 29.7 bits (66), Expect = 5.1
Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 16/145 (11%)
Query: 423 PEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPK 482
+ P + V +T L P EPV+ + EP P+
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPP-------------EPVVEPEPEPEPIPE 70
Query: 483 PEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPK 542
P E + + PKP+P+ + + +PK + P P L
Sbjct: 71 PPKEAPVVIEKPKP---KPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSST 127
Query: 543 PKPELLLPPKPEPEKLLLPPKPKPK 567
P + +P+
Sbjct: 128 ATAATSKPVTSVASGPRALSRNQPQ 152
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3',
R interference; 3.20A {Drosophila melanogaster}
Length = 1140
Score = 42.3 bits (98), Expect = 0.001
Identities = 24/251 (9%), Positives = 60/251 (23%), Gaps = 9/251 (3%)
Query: 986 AVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLS-LKYYCRRNLSQNYYCHQNQSPNN 1044
E+ + + ++ + ++ +L L+ Y
Sbjct: 214 CTHELHFVVLREEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQ 273
Query: 1045 YYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQN 1104
L + N + ++S N + + +
Sbjct: 274 LIDDWVL--MGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRR 331
Query: 1105 --YYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQS 1162
+ + + + Y N S+ + +
Sbjct: 332 LQIFISALTEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLL 391
Query: 1163 QKYYYHQNLSQNCYYHQNRSQNY---YYHQNLSQNYYYHQNQSQKNYYYH-LNLSQNYYY 1218
++ S QNY +Y ++ + ++Y + L +YYY
Sbjct: 392 YDDDSEEDCSDENAVLLKEFQNYKRNFYRNKFKRDPNDELIEELCHHYVNALQWVLDYYY 451
Query: 1219 HQNLSQNYYYH 1229
S ++YY
Sbjct: 452 RGVQSWDWYYP 462
Score = 36.5 bits (83), Expect = 0.074
Identities = 23/215 (10%), Positives = 52/215 (24%), Gaps = 8/215 (3%)
Query: 999 NQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFH 1058
+ + ++ L + L N + + L L Y
Sbjct: 253 EYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIG 312
Query: 1059 QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYH 1118
+ ++N N Q + + + ++ Y +
Sbjct: 313 IYPTLGGNINENGKLNLRRLQ----IFISALTEVELDHFKEHADDLKYMNNKSEAFDMDV 368
Query: 1119 QNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQ--KYYYHQNLSQNCY 1176
++ +L L + +N + + +Y ++
Sbjct: 369 GEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAVLLKEFQNYKRNFYRNKFKRDPN 428
Query: 1177 YHQNRSQNYYYHQNLS--QNYYYHQNQSQKNYYYH 1209
++Y L +YYY QS YY
Sbjct: 429 DELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPF 463
Score = 34.2 bits (77), Expect = 0.31
Identities = 26/256 (10%), Positives = 62/256 (24%), Gaps = 12/256 (4%)
Query: 990 IGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPN-----N 1044
+G ++ H L Y +L N N Q
Sbjct: 285 VGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVEL 344
Query: 1045 YYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQN 1104
++ + Y + ++++ +L L + +N
Sbjct: 345 DHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDEN 404
Query: 1105 YYY---HQNQSQNYYYH-QNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQN 1160
QN +N+Y + + + L +Y +YY QS ++YY +
Sbjct: 405 AVLLKEFQNYKRNFYRNKFKRDPNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFH 464
Query: 1161 QS---QKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYY 1217
+ + + + L + + +
Sbjct: 465 YTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEF 524
Query: 1218 YHQNLSQNYYYHQNSF 1233
Y + ++ +
Sbjct: 525 YPLEFESDLNGKKHDW 540
Score = 33.8 bits (76), Expect = 0.41
Identities = 16/202 (7%), Positives = 39/202 (19%), Gaps = 4/202 (1%)
Query: 986 AVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNY 1045
E+ + + + L +
Sbjct: 340 TEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEED 399
Query: 1046 YYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNY 1105
N F + Y N + L Y +YY QS ++
Sbjct: 400 CSDENAVLLKEFQNYKRNFYRNKFKRDPNDELIEELCHHYVNALQWVLDYYYRGVQSWDW 459
Query: 1106 YYHQNQS---QNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQS-QNYYYHQNQ 1161
YY + + + + ++ L + +
Sbjct: 460 YYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTS 519
Query: 1162 SQKYYYHQNLSQNCYYHQNRSQ 1183
+Y + ++ +
Sbjct: 520 PLAEFYPLEFESDLNGKKHDWE 541
>2y0h_A Probable porin, OPDL; transport protein, outer membrane, OPRD; HET:
C8E; 2.20A {Pseudomonas aeruginosa} PDB: 3t0s_A*
Length = 391
Score = 41.3 bits (96), Expect = 0.002
Identities = 22/199 (11%), Positives = 52/199 (26%), Gaps = 24/199 (12%)
Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLS-------LKYYCRRNLSQNY 1095
++ L L +++++ ++ + S Y LS +Y
Sbjct: 137 SSEIEGLTL-TAGQLWKSRTRESAGSDDMYIMGRDKAHASDEFNLAGATYAFTPRLSASY 195
Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNY 1155
Y Y ++ + +Y + +L + Y + N
Sbjct: 196 Y--------YGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAA-ISGPVDNR 246
Query: 1156 YYHQNQSQKYYYH------QNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYH 1209
+ + + H Q + N + Y NL + +K++
Sbjct: 247 NLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTF-TRPQEKSWQLR 305
Query: 1210 LNLSQNYYYHQNLSQNYYY 1228
+ L+ Y
Sbjct: 306 YDYDFAGLGLPGLNLMTRY 324
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 40.0 bits (93), Expect = 0.003
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 490 PPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLL 549
+P P P+P+P + P L + L + + KPK
Sbjct: 13 RWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKT--- 69
Query: 550 PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEI 598
PP + KP KP + K E + I P + ++
Sbjct: 70 PPPKPKKT---QKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
Score = 38.8 bits (90), Expect = 0.006
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 6/109 (5%)
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELI 589
+P P P+P+P + P +L L L PK K +
Sbjct: 13 RWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQ------KQKRAQKKP 66
Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEI 638
P +P KP + K E + + P + ++
Sbjct: 67 KKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
Score = 38.1 bits (88), Expect = 0.011
Identities = 13/98 (13%), Positives = 27/98 (27%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
P + PP P P + + + + K + P
Sbjct: 18 PVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKT 77
Query: 641 PPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPEL 678
+P KP + +K E + + P + ++
Sbjct: 78 QKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
Score = 35.8 bits (82), Expect = 0.057
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 4/103 (3%)
Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLL----PPKPKPKLLLPPKPE 575
+ P P+P+P + P L L L K K P
Sbjct: 13 RWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPP 72
Query: 576 SELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEI 618
+P KP + K E + + P + ++
Sbjct: 73 KPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
Score = 35.0 bits (80), Expect = 0.12
Identities = 12/98 (12%), Positives = 25/98 (25%)
Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
P + PP P P + + + + K + P
Sbjct: 18 PVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKT 77
Query: 651 PPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPEL 688
+ KP + K E + + P + ++
Sbjct: 78 QKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
Score = 34.2 bits (78), Expect = 0.18
Identities = 13/95 (13%), Positives = 24/95 (25%)
Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLL 660
P + PP P P + + + + K + P
Sbjct: 18 PVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKT 77
Query: 661 PLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
+P KP + K E + + P +
Sbjct: 78 QKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLD 112
Score = 33.1 bits (75), Expect = 0.50
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 2/114 (1%)
Query: 414 VPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLD 473
+P T P P + +P+ + P + + L K++
Sbjct: 4 IPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQ 63
Query: 474 KKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPEL 527
KK PP + +P KP + K+E + P + ++
Sbjct: 64 KKPKKTPPPKPKK--TQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
Score = 30.8 bits (69), Expect = 2.7
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 12/118 (10%)
Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLL 660
+ P + P+P+ PP+ P + + + + K +
Sbjct: 11 GRRWRPAPVQRYIPQPQPPAPPRRRR---GPSQLQQLVAALGALALQPKQKQKRAQKKPK 67
Query: 661 PLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEP 718
P +P KP + K E D PV+LD K
Sbjct: 68 KTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN---------DCIFPVMLDGKVN 116
Score = 30.0 bits (67), Expect = 4.5
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 10/111 (9%)
Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
+P P P+P+P + +L + L+ L K +
Sbjct: 13 RWRPAPVQRYIPQPQPPAPPRRRRGPSQL--------QQLVAALGALALQPKQKQKRAQK 64
Query: 600 IPPKPEP--ELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPEL 648
P K P +P KP + K E + + P + ++
Sbjct: 65 KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGKV 115
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 39.4 bits (91), Expect = 0.004
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 4/114 (3%)
Query: 482 KPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPP 541
+P P +P P P L + + + P P P P
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRP----RP 67
Query: 542 KPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPE 595
P+ + P +P K P + K K KP + K E + + K E
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 36.7 bits (84), Expect = 0.037
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 583 KPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPP 642
+P P +P P P + + L + +P+ PP
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARN---GLASQIQQLTTAVSALVIGQATRPQNPRPRPP 68
Query: 643 KPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
+ + P+ + P + + + KP + K E + L K E
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 36.3 bits (83), Expect = 0.043
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 4/114 (3%)
Query: 532 KPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIP 591
+P P +P+ P P + + L + +P+ P
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARN----GLASQIQQLTTAVSALVIGQATRPQNPRPRP 67
Query: 592 PKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPE 645
P + + P+P+ P + + + KP + K E + L K E
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 36.3 bits (83), Expect = 0.049
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 3/113 (2%)
Query: 563 KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPP 622
+P P +P P P + + L + +P+ PP
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARN---GLASQIQQLTTAVSALVIGQATRPQNPRPRPP 68
Query: 623 KPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPE 675
+ + P+P+ P + + + KP + LK E + L K E
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 34.4 bits (78), Expect = 0.16
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 4/106 (3%)
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELI 589
+P P P L + + PP + +
Sbjct: 20 MWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPR----PPPRQKKQA 75
Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPE 635
P+P+ P + + + KP + K E + L K E
Sbjct: 76 PKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 34.0 bits (77), Expect = 0.24
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 6/115 (5%)
Query: 551 PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLL 610
P P P +P+ + P P L + + + P P P
Sbjct: 13 PFPAPTA---MWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPR--- 66
Query: 611 PPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPE 665
PP + + P+P+ P + + + KP + K E++ L +K E
Sbjct: 67 PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 32.5 bits (73), Expect = 0.78
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 3/116 (2%)
Query: 593 KPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 652
+P P +P P P + + L I +P+ PP
Sbjct: 12 RPFPAPTAMWRPRRRRQAAPMPARN---GLASQIQQLTTAVSALVIGQATRPQNPRPRPP 68
Query: 653 KPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKK 708
+ + P+P+ P + + + KP + K E D
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGD 124
Score = 32.1 bits (72), Expect = 0.86
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 7/112 (6%)
Query: 415 PEPTKLQLPEVPEPTKPELPEVPELTKTQ--LPEVPEPTKPQILDKKEPVLLDKKEPVLL 472
P PT + P P ++ Q V Q + P +
Sbjct: 15 PAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNP-----RPRPPP 69
Query: 473 DKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSE 524
+K+ P+P+ P + + + KP + KLE L K+E
Sbjct: 70 RQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 31.7 bits (71), Expect = 1.1
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLP 540
P P P + P+ + P +L + + P+P P
Sbjct: 13 PFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQK 72
Query: 541 PKPKPELLLPPK--PEPEKLLLPPKPKP--KLLLPPKPESELLLPPKPE 585
+ + P K P+ +K P K KP + + K E++ L K E
Sbjct: 73 KQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 30.2 bits (67), Expect = 3.9
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 2/109 (1%)
Query: 426 PEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEP 485
P PT P ++ Q L L+ + + PP +
Sbjct: 15 PAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATR--PQNPRPRPPPRQK 72
Query: 486 EILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPE 534
+ P+P+ P + + + K + + K E + L K E
Sbjct: 73 KQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Score = 30.2 bits (67), Expect = 3.9
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTK-PQLPEVLEPTKLQLPEDPEPTKPQLPEDPETT 407
P PT P P ++ QL + + P+ +P+ P +
Sbjct: 15 PAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQ 74
Query: 408 KPQLPEVPEPTKLQLPEVPEPTKPE 432
P+ P P+ K Q + +P K +
Sbjct: 75 APKQPPKPKKPKPQEKKKKQPAKTK 99
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 39.7 bits (93), Expect = 0.006
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 14/117 (11%)
Query: 599 LIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKP-EPELLLPPKPESE 657
++P + E E E L +P P+I PP P PE E +
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSER---EKRPPPKIDPPPSPKAPEPSKRVLKEKQ 57
Query: 658 LLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLD 714
L + E LPP LL P + + + PE++ LL E L +
Sbjct: 58 APLFVDTAVEGTLPP---LSLLDPAEVKQK---SYSPESLEAMSRLL----EIKLKE 104
Score = 39.3 bits (92), Expect = 0.007
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 589 IIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPEL 648
++P + E E E L PP P PEP + + + L
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPL 60
Query: 649 LLPPKPESELLLPLKPEPEILLPPKPEPE 677
+ E L P +L P + + +
Sbjct: 61 FVDTAVEGTL-----PPLSLLDPAEVKQK 84
Score = 38.9 bits (91), Expect = 0.010
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 569 LLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPEL 628
++P + E E E + PP P PEP + + + L
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPL 60
Query: 629 LLPPKPEPEILLPPKPEPELLLPPKPESE 657
+ E + P LL P + + +
Sbjct: 61 FVDTAVEGTL-----PPLSLLDPAEVKQK 84
Score = 37.7 bits (88), Expect = 0.022
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 548 LLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPE 607
++P + E K + + L E E PPK +P P PE E +
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPP---PSPKAPEPSKRVLKEKQ 57
Query: 608 LLLPPKPEPEILLPPKPEPELLLPPKPEPE 637
L E LPP LL P + + +
Sbjct: 58 APLFVDTAVEGTLPP---LSLLDPAEVKQK 84
Score = 37.7 bits (88), Expect = 0.025
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 579 LLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEI 638
++P + E E E + PP P PEP + + + +
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPL 60
Query: 639 LLPPKPEPELLLPPKPESELLLPLKPEPE 667
+ E L P LL P + + +
Sbjct: 61 FVDTAVEGTL-----PPLSLLDPAEVKQK 84
Score = 37.0 bits (86), Expect = 0.040
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 498 LLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEK 557
++P + E LE + L +P P++ PP PK + ++
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSER---EKRPPPKIDPPPSPKAPEPSKRVLKEKQ 57
Query: 558 LLLPPKPKPKLLLPPKPESELLLPPKPEPE 587
L + LPP LL P + + +
Sbjct: 58 APLFVDTAVEGTLPP---LSLLDPAEVKQK 84
Score = 35.0 bits (81), Expect = 0.15
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 528 LLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPE 587
++P + E + E L +P PK+ PP P++ P K +
Sbjct: 1 MVPDRREQSKAKERLLEREEALAKHMSER----EKRPPPKIDPPPSPKAPE--PSKRVLK 54
Query: 588 LIIPPKPEPEILIPPKPEPELLLPPKPEPE 617
P + P LL P + + +
Sbjct: 55 EKQAPLFVDTAVEGTLPPLSLLDPAEVKQK 84
Score = 34.7 bits (80), Expect = 0.19
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 422 LPEVPEPTKPE--LPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVL 479
+P+ E +K + L E E + E + P+I P + + VL +K+ P+
Sbjct: 2 VPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLF 61
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLE 514
L P LL P + + + P LE
Sbjct: 62 VDTAVEGTL----PPLSLLDPAEVKQKSYSPESLE 92
Score = 34.3 bits (79), Expect = 0.25
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 457 DKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPK 516
D++E K + LL+++E + E E PPK +P P PEP + + +
Sbjct: 4 DRREQ---SKAKERLLEREEALAKHMSEREKRPPPKIDPPPS-PKAPEPSKRVLKEKQAP 59
Query: 517 LLLPPKSEPELLLPPKPEPELLLPPKPKPE 546
L + E L P LL P + K +
Sbjct: 60 LFVDTAVEGTL-----PPLSLLDPAEVKQK 84
Score = 34.3 bits (79), Expect = 0.29
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 470 VLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLL 529
++ D++E + E + + + + P + P PK P K +
Sbjct: 1 MVPDRREQSKAKERLLE---REEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQ 57
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKL 558
P + P LL P + + +
Sbjct: 58 APLFVDTAVEGTLPPLSLLDPAEVKQKSY 86
Score = 33.9 bits (78), Expect = 0.38
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 3/101 (2%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQL 345
P+ + + E E + + P P P P + + L +
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFV 62
Query: 346 PEDPEPTKPQ---LPEDPEPTKPQLPEVPEPTKPQLPEVLE 383
E T P L K PE E L L+
Sbjct: 63 DTAVEGTLPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLK 103
Score = 32.7 bits (75), Expect = 0.87
Identities = 12/68 (17%), Positives = 22/68 (32%)
Query: 358 EDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEP 417
+ K +L E E + E + ++ P P P+ + K V
Sbjct: 6 REQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTA 65
Query: 418 TKLQLPEV 425
+ LP +
Sbjct: 66 VEGTLPPL 73
Score = 31.6 bits (72), Expect = 1.7
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 383 EPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKT 442
K +L E E + E + P++ P P + + K V +
Sbjct: 9 SKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAVEG 68
Query: 443 QLPEV----PEPTKPQILDKKE 460
LP + P K + +
Sbjct: 69 TLPPLSLLDPAEVKQKSYSPES 90
Score = 31.6 bits (72), Expect = 1.9
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 312 LPEVPEPTKSQ--LPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPE 369
+P+ E +K++ L E E + E + ++ P P P+ + K
Sbjct: 2 VPDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLF 61
Query: 370 VPEPTKPQLPEV---LEPTKLQLPEDPE 394
V + LP + Q PE
Sbjct: 62 VDTAVEGTLPPLSLLDPAEVKQKSYSPE 89
Score = 31.6 bits (72), Expect = 2.1
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 323 LPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVL 382
+P+ E +K + E E + E + P++ P P P+ + +
Sbjct: 2 VPDRREQSKAKERL---------LEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRV 52
Query: 383 EPTKLQLPEDPEPTKPQLP 401
K + LP
Sbjct: 53 LKEKQAPLFVDTAVEGTLP 71
Score = 30.8 bits (70), Expect = 3.2
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 278 EDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV 337
D ++ + + + E + + E + P++ P P + + K V
Sbjct: 3 PDRREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFV 62
Query: 338 LEPTTLQLP-----EDPEPTKPQLPED 359
LP + E + +
Sbjct: 63 DTAVEGTLPPLSLLDPAEVKQKSYSPE 89
>3szv_A Pyroglutatmate porin OPDO; beta-barrel, channel, bacterial outer
membrane, membrane Pro; HET: C8E; 1.45A {Pseudomonas
aeruginosa} PDB: 2y0k_A*
Length = 401
Score = 39.4 bits (91), Expect = 0.006
Identities = 26/296 (8%), Positives = 72/296 (24%), Gaps = 52/296 (17%)
Query: 968 NSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNY--YYHQNLSLKYY 1025
E + + G G + + + + + Y L+ K
Sbjct: 57 RLESGFSEGTVGFGVDAIGLLGFKLDSGSGSGGTGLLPADGSAGGSQDDYAKLGLTAKAR 116
Query: 1026 CRRNLSQNYYCHQNQSPNNYYYHLN----LSQNY------------------YFHQNQSQ 1063
+S + + N L + + + +N+
Sbjct: 117 ----VSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLN 172
Query: 1064 NYYYHQNLSQNYY-----YHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYH 1118
+ +Q S N Y L+ + + ++ + +
Sbjct: 173 SSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLH--------QGRLKDIYRQTFAG 224
Query: 1119 QNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYH------QNLS 1172
+ ++L + + + + N + S + H Q +S
Sbjct: 225 LVHTLDLGGQRSLKSDLRFARASEDG---GFRELDNRAFGALFSLRLGAHAVAAGYQRIS 281
Query: 1173 QNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYY 1228
+ Y + Y + + + + ++++ + LS Y
Sbjct: 282 GDDPYPYIAGSDPYLVNFIQIGDFGNVD--ERSWQLRYDYDFGALGLPGLSFMSRY 335
>1m3y_A The major capsid protein of PBCV-1, VP54; major capsit protein VP54,
jelly RO glycoprotein, viral protein; HET: NDG MAN NAG;
2.00A {Paramecium bursaria chlorella virus 1} SCOP:
b.121.2.3 b.121.2.3 PDB: 1j5q_A* 3kk5_A 1m4x_A
Length = 413
Score = 39.1 bits (89), Expect = 0.007
Identities = 17/186 (9%), Positives = 42/186 (22%), Gaps = 3/186 (1%)
Query: 966 PPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYY 1025
+ V + + + G + +Y F Q + + Q +
Sbjct: 156 ASQVQGVNYNGSSAIAGAAQPTMSVWVDYIFLDTQERTRFAQLPHEYLIEQLQFTGSETA 215
Query: 1026 CRRNLSQNYYCHQNQ--SPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSL 1083
+Q + P Y + Y N + + +
Sbjct: 216 TPSATTQASQNIRLNFNHPTKYLAWNFNNPTNYGQYTALANIPGACSGAGTAAAT-VTTP 274
Query: 1084 KYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQ 1143
Y ++ + + + N+ Q Y ++ Y + +
Sbjct: 275 DYGNTGTYNEQLAVLDSAKIQLNGQDRFATRKGSYFNKVQPYQSIGGVTPAGVYLYSFAL 334
Query: 1144 NYYCHQ 1149
Q
Sbjct: 335 KPAGRQ 340
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 37.9 bits (87), Expect = 0.019
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
P + + P P P+ + + + P P E +
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 641 PPKPEPELLLPPKPESELL 659
P P E + P P ++ L
Sbjct: 366 EPAPVEE--VAPAPAAQRL 382
Score = 37.6 bits (86), Expect = 0.025
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 4/76 (5%)
Query: 561 PPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILL 620
P K + P S P P+ + + + P P E
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA--- 362
Query: 621 PPKPEPELLLPPKPEP 636
EP + P P
Sbjct: 363 -GSVEPAPVEEVAPAP 377
Score = 37.2 bits (85), Expect = 0.029
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 4/76 (5%)
Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
P ++ + P P P+ + + + P P E
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA--- 362
Query: 631 PPKPEPEILLPPKPEP 646
EP + P P
Sbjct: 363 -GSVEPAPVEEVAPAP 377
Score = 36.8 bits (84), Expect = 0.037
Identities = 12/77 (15%), Positives = 19/77 (24%)
Query: 573 KPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 632
+ + + P + P PE P E E
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 633 KPEPEILLPPKPEPELL 649
+P P + P P + L
Sbjct: 366 EPAPVEEVAPAPAAQRL 382
Score = 36.8 bits (84), Expect = 0.043
Identities = 11/76 (14%), Positives = 18/76 (23%), Gaps = 4/76 (5%)
Query: 551 PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLL 610
P + P P + P+ + + + P P E
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA--- 362
Query: 611 PPKPEPEILLPPKPEP 626
EP + P P
Sbjct: 363 -GSVEPAPVEEVAPAP 377
Score = 36.0 bits (82), Expect = 0.068
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
P + + P P P+ + + ++ P P E +
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 540 PPKPKPELLLPPKPEPEKL 558
P P E + P P ++L
Sbjct: 366 EPAPVEE--VAPAPAAQRL 382
Score = 35.6 bits (81), Expect = 0.11
Identities = 14/79 (17%), Positives = 20/79 (25%), Gaps = 9/79 (11%)
Query: 538 LLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPE 597
L E L P E P P+ ++ + + P P E
Sbjct: 308 LYKTAVTQEALPGSAPASE-----AAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA 362
Query: 598 ILIPPKPEPELLLPPKPEP 616
EP + P P
Sbjct: 363 ----GSVEPAPVEEVAPAP 377
Score = 35.2 bits (80), Expect = 0.13
Identities = 11/77 (14%), Positives = 22/77 (28%)
Query: 621 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLL 680
P + + P P P+ ++ + + P P E +
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 681 PPKPEPELLLPPKPETI 697
P P E+ P + +
Sbjct: 366 EPAPVEEVAPAPAAQRL 382
Score = 34.5 bits (78), Expect = 0.24
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 472 LDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPP 531
L K P P P+ + + + P P +E + P
Sbjct: 308 LYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEP 367
Query: 532 KPEPELLLPPKPKPELL 548
P E + P P + L
Sbjct: 368 APVEE--VAPAPAAQRL 382
Score = 34.1 bits (77), Expect = 0.31
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 4/76 (5%)
Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLL 660
P + + P P P+ + + + P P E+
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA--- 362
Query: 661 PLKPEPEILLPPKPEP 676
EP + P P
Sbjct: 363 -GSVEPAPVEEVAPAP 377
Score = 33.7 bits (76), Expect = 0.34
Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 4/76 (5%)
Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
P + + P P P+ + + + P P E
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEA---- 361
Query: 651 PPKPESELLLPLKPEP 666
E + + P P
Sbjct: 362 AGSVEPAPVEEVAPAP 377
Score = 33.3 bits (75), Expect = 0.50
Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 8/78 (10%)
Query: 609 LLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEI 668
L E L P E P P+ + P +E +
Sbjct: 308 LYKTAVTQEALPGSAPASE----AAPAAATEAAPEAPAQ----EVPAAEAVPAAAEPGAA 359
Query: 669 LLPPKPEPELLLPPKPEP 686
EP + P P
Sbjct: 360 EAAGSVEPAPVEEVAPAP 377
Score = 32.2 bits (72), Expect = 1.2
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 488 LLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPEL 547
L E L P E E P++ + + + P P +
Sbjct: 308 LYKTAVTQEALPGSAPASEAAPAAATEA----APEAPAQEVPAAEAVPAAAEPGAAEAAG 363
Query: 548 LLPPKPEPEKLLLPPKPKPKLL 569
+ P P E P P + L
Sbjct: 364 SVEPAPVEEV---APAPAAQRL 382
Score = 31.8 bits (71), Expect = 1.3
Identities = 9/71 (12%), Positives = 16/71 (22%), Gaps = 3/71 (4%)
Query: 526 ELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPE 585
+ + + P + P PE P + + E
Sbjct: 310 KTAVTQEALPGSAPASEAAPAAATEAAPEAPA---QEVPAAEAVPAAAEPGAAEAAGSVE 366
Query: 586 PELIIPPKPEP 596
P + P P
Sbjct: 367 PAPVEEVAPAP 377
Score = 31.0 bits (69), Expect = 2.7
Identities = 11/69 (15%), Positives = 17/69 (24%)
Query: 467 KEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPE 526
+ + + P P E + PE P E + EP
Sbjct: 309 YKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPA 368
Query: 527 LLLPPKPEP 535
+ P P
Sbjct: 369 PVEEVAPAP 377
Score = 29.8 bits (66), Expect = 6.2
Identities = 12/72 (16%), Positives = 21/72 (29%)
Query: 437 PELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPE 496
+T+ LP ++ E + V + P E +P P
Sbjct: 311 TAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPV 370
Query: 497 LLLPPKPEPELL 508
+ P P + L
Sbjct: 371 EEVAPAPAAQRL 382
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.044
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 22/89 (24%)
Query: 74 HQDSSHGNILETKPPNLLQQNKSHENIPENSE-TPTPNLDGTGQLNDNNKSVIKWFLENV 132
++ + ++ PP++L+ + EN+E P+P L S+ E V
Sbjct: 311 YEAYPNTSL----PPSILEDSL------ENNEGVPSPML-----------SISNLTQEQV 349
Query: 133 ECLLDYLVQQKETANVNSADLVNNRENVV 161
+ ++ LVN +N+V
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Score = 35.4 bits (81), Expect = 0.14
Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 64/253 (25%)
Query: 27 LDLEKVRPVQTYVAYG---TDITVPTNIYNV-----QCFSSTTVEHSRRPKNTQLHQDSS 78
+D RP+ +++G + VPT + + + F+ E + + ++
Sbjct: 1 MDAYSTRPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF--AADDEPTT 56
Query: 79 HGNILETKPPNLLQQNKSH-ENIPENSETPTPNLDGTGQLNDNNKSVIKWF----L--EN 131
P L+ + + ++ E S+ GQ + + F L +
Sbjct: 57 --------PAELVGKFLGYVSSLVEPSK--------VGQFDQVLNLCLTEFENCYLEGND 100
Query: 132 VECLLDYLVQQKETANVNSADLVNN----RENVVKPVERKDGK---ETTEKETGKIA--- 181
+ L L+Q+ +T V + +L+ N R +P ++K + ++
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 182 -GNGTTKEETEGTFAKLAD-SETNPTEV-------AERTAPESSKRTDSKE------DIE 226
G G T+ F +L D +T V AE + D+++ +I
Sbjct: 161 GGQGN----TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 227 NRVDNNDGTIATD 239
++N T D
Sbjct: 217 EWLENPSNTPDKD 229
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Length = 501
Score = 36.8 bits (84), Expect = 0.048
Identities = 24/240 (10%), Positives = 58/240 (24%), Gaps = 30/240 (12%)
Query: 1015 YYHQNLSLKYYCRRN----LSQNYYCHQNQSPNNYYYHLNL-SQNYYFHQNQSQNYYYHQ 1069
+ N +L +S ++ + + N+ + Q
Sbjct: 125 RFSNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQ 184
Query: 1070 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQ----NYYYHQNQ---- 1121
L++ Q CR S + CH NQ +S + +
Sbjct: 185 KLTKIICAQQC---SGRCRGK-SPSDCCH-NQCAAGCTGPRESDCLVCRKFRDEATCKDT 239
Query: 1122 --SQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQ-------SQKYYYHQNLS 1172
Y + S C + +NY + + Y ++
Sbjct: 240 CPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGV 299
Query: 1173 QNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQN---YYYHQNLSQNYYYH 1229
+ C + + + + + ++ S + + + + H
Sbjct: 300 RKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTH 359
Score = 31.4 bits (70), Expect = 1.9
Identities = 13/248 (5%), Positives = 45/248 (18%), Gaps = 17/248 (6%)
Query: 992 QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNL 1051
+ F + + + + + + + + N
Sbjct: 152 MSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQ 211
Query: 1052 SQNYYFHQNQSQ----NYYYHQNL------SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQ 1101
+S + + Y + S C +
Sbjct: 212 CAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKC 271
Query: 1102 SQNYYYHQNQS------QNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNY 1155
+NY + S + Y + + + + + +
Sbjct: 272 PRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATN 331
Query: 1156 YYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYY-HQNQSQKNYYYHLNLSQ 1214
H ++ + + + +
Sbjct: 332 IKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRT 391
Query: 1215 NYYYHQNL 1222
+ + +NL
Sbjct: 392 DLHAFENL 399
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 590
Score = 36.7 bits (84), Expect = 0.050
Identities = 33/247 (13%), Positives = 61/247 (24%), Gaps = 12/247 (4%)
Query: 994 YYFHQNQSQNYYYHQNLSQN-YYYHQNLSLKYYCR--RNLSQNYYCHQNQSPNNYYYHLN 1050
Y + + N + L++ N Y + S + N
Sbjct: 183 YNTGLERVWGPDSRDWVRYNQFRRELTLTVLDIVALFSNYDSRRYPIRTVSQLTREIYTN 242
Query: 1051 LSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC-HQNQSQNYYYHQ 1109
+ + QN+ Q + S+ Y + NY+ HQ + +
Sbjct: 243 PVLENFDGSFRGMAQRIEQNIRQPHLMDILNSITIYTDVHRGFNYWSGHQITASPVGFSG 302
Query: 1110 NQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQ 1169
+ + + +L+ + S Y + NQ
Sbjct: 303 PEFAFPLFGNAGNAAPPVLVSLTGLGIFRTLSSPLY----RRIILGSGPNNQELFVLDGT 358
Query: 1170 NLSQNCYYHQNRSQNYYYHQNL-SQNYYYHQNQSQKNY--YYHLNLSQNYYYHQNLSQNY 1226
S S Y + S + Q+ S + H LS Q Y
Sbjct: 359 EFSFASLTTNLPSTIYRQRGTVDSLDVIPPQDNSVPPRAGFSH-RLSHVTMLSQAAGAVY 417
Query: 1227 YYHQNSF 1233
+F
Sbjct: 418 TLRAPTF 424
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 36.1 bits (82), Expect = 0.063
Identities = 21/254 (8%), Positives = 56/254 (22%), Gaps = 19/254 (7%)
Query: 979 GVGGYFGAVPEIGQNYYFHQNQSQNYYY--HQNLSQNY--YYHQNLSLKYYCRRNLSQNY 1034
G + + Q Y Q + L LS Y
Sbjct: 137 PAGVRGTKLFPYLTDDEEAVEQIGTYLLAAQQGTEAVLAGCGSRKPDLS-----ELSSRY 191
Query: 1035 YCHQNQSPNNY--YYHLNLSQ------NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYY 1086
+ + + + +Y + + S + + Y
Sbjct: 192 FTPKFGFLHWFTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIY 251
Query: 1087 CRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYY 1146
++ + + + + QN ++ + + + + H S
Sbjct: 252 GL-DIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAAL 310
Query: 1147 CHQNQSQNYYY-HQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKN 1205
+ Y + + + + Q+ + ++
Sbjct: 311 FPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQELPSDPNRSP 370
Query: 1206 YYYHLNLSQNYYYH 1219
Y N+ + YH
Sbjct: 371 GYVDRNIVGLHVYH 384
Score = 34.2 bits (77), Expect = 0.24
Identities = 17/163 (10%), Positives = 43/163 (26%), Gaps = 3/163 (1%)
Query: 978 TGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCH 1037
GVGGY G + + Y ++ + + L ++ +
Sbjct: 223 IGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDI-MDKSHVDELRIRTIQGDQNDAEFLDR 281
Query: 1038 QNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC 1097
+ + ++ + H S + Y +++ Y+ +
Sbjct: 282 IARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQE 341
Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQS--QKYYYHQNLSQNYYYH 1138
S + + + Y +N+ + YH
Sbjct: 342 CSGTSLGLLKSLIDAIQHQELPSDPNRSPGYVDRNIVGLHVYH 384
>2f6e_A Toxin A; beta solenoid, C-terminal repetitive domain, crops; 1.85A
{Clostridium difficile}
Length = 127
Score = 33.9 bits (78), Expect = 0.079
Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 17/118 (14%)
Query: 1115 YYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN 1174
YY+ N + ++ + +Y +N + + Y+ + +
Sbjct: 1 YYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIEGQAIRY 60
Query: 1175 CYYHQNRSQNYYYHQNLSQN--------------YYYHQNQSQKNYYYHLNLSQNYYY 1218
+ N YY N YY+ + + + Y+
Sbjct: 61 QNRFLHLLGNIYY---FGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYF 115
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 35.9 bits (83), Expect = 0.094
Identities = 24/149 (16%), Positives = 36/149 (24%), Gaps = 13/149 (8%)
Query: 320 KSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLP 379
+ EV K QL + L L L K L + P KP
Sbjct: 31 YELMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLESTLAELKKTLKKKKTPKKPIAA 90
Query: 380 EVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPEL 439
Q + ++ + P D E E + E
Sbjct: 91 ANGSANVTQKLANISISQQR-PNDRLPDWLD------------EEESEGERNGEEANDEK 137
Query: 440 TKTQLPEVPEPTKPQILDKKEPVLLDKKE 468
T + + PTKP+ +
Sbjct: 138 TVQRYYKTTVPTKPKKPHDISAFVKSALP 166
Score = 31.2 bits (71), Expect = 2.5
Identities = 13/120 (10%), Positives = 23/120 (19%), Gaps = 4/120 (3%)
Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELL 649
L + E L + +P K +
Sbjct: 51 WDNLSLKLALFDNNFDLESTLAELKKTLKKKKTPKKPIAAANGSANVT----QKLANISI 106
Query: 650 LPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKE 709
+P L L E E + + +P KP+ +
Sbjct: 107 SQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALP 166
Score = 30.1 bits (68), Expect = 4.9
Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 2/102 (1%)
Query: 466 KKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEP 525
E L + K+ + K + + + K + + +L E
Sbjct: 66 DLESTLAELKKTLKKKKTPKKPIAAANGSANV--TQKLANISISQQRPNDRLPDWLDEEE 123
Query: 526 ELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPK 567
E + + +P KP+ +
Sbjct: 124 SEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSAL 165
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 35.6 bits (80), Expect = 0.097
Identities = 26/103 (25%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 335 PEVLEPTTLQLPEDPEPTKPQLP-EDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDP 393
V T P P +P +D K K + V + TK +
Sbjct: 396 NYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 455
Query: 394 EPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEV 436
+PT P P ET KP P P EPT P E
Sbjct: 456 KPTAPTKPT-YETEKPLKPAPVAPNY-----EKEPTPPTRLEH 492
Score = 33.7 bits (75), Expect = 0.38
Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 294 PEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTK 353
K+ K + VP+ TK + +PT P P P P P
Sbjct: 422 NTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEK----PLKPAPVA 477
Query: 354 PQLPEDPEPTKPQLPEV 370
P EPT P E
Sbjct: 478 PNYE--KEPTPPTRLEH 492
Score = 31.8 bits (70), Expect = 1.5
Identities = 12/56 (21%), Positives = 16/56 (28%)
Query: 282 KPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV 337
K V +PT P P + + +P EPT P E
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492
Score = 31.8 bits (70), Expect = 1.7
Identities = 17/98 (17%), Positives = 23/98 (23%), Gaps = 8/98 (8%)
Query: 317 EPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKP 376
+ +P P P + KP P P
Sbjct: 403 TSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTK 462
Query: 377 QLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEV 414
E +P K P P P ++P T P E
Sbjct: 463 PTYETEKPLK------PAPVAPNYEKEP--TPPTRLEH 492
Score = 29.9 bits (65), Expect = 7.0
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
P P + + + + P P + P KP E
Sbjct: 410 PVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEK 469
Query: 641 PPKPEPELLLPPKPESELLLPLKPEPE 667
P KP P + P E E P + E
Sbjct: 470 PLKPAP---VAPNYEKEPTPPTRLEHH 493
Score = 29.5 bits (64), Expect = 7.3
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 589 IIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPEL 648
+ ++P P + + + + P P +
Sbjct: 398 VTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKP 457
Query: 649 LLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPE 687
P KP E PLKP P + P E E P + E
Sbjct: 458 TAPTKPTYETEKPLKPAP---VAPNYEKEPTPPTRLEHH 493
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 35.5 bits (81), Expect = 0.11
Identities = 9/116 (7%), Positives = 24/116 (20%), Gaps = 10/116 (8%)
Query: 1043 NNYYYHLNL--------SQNYYFH-QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1093
+ L + Q ++F + + + L N + S
Sbjct: 32 DPRRIRLAIRPDLASQHFQWFHFKVEGMAPATEHCFTL-VNAGQSAYSHAWSGYQAVASY 90
Query: 1094 NYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQ 1149
+ Y Q Y+ + ++ + +
Sbjct: 91 DGERWFRVPSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVER 146
Score = 33.2 bits (75), Expect = 0.48
Identities = 8/112 (7%), Positives = 23/112 (20%), Gaps = 2/112 (1%)
Query: 1110 NQSQNYYYH-QNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYH 1168
Q +++ + + + L N S + +Y
Sbjct: 47 QHFQWFHFKVEGMAPATEHCFTL-VNAGQSAYSHAWSGYQAVASYDGERWFRVPSQYDAD 105
Query: 1169 QNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQ 1220
Q Y+ + ++ + L + +
Sbjct: 106 GLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVERLAVGTSVQGRD 157
Score = 33.2 bits (75), Expect = 0.55
Identities = 9/117 (7%), Positives = 31/117 (26%), Gaps = 13/117 (11%)
Query: 1120 NQSQKYYYH-QNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH 1178
Q +++ + ++ + L + QS + Y
Sbjct: 47 QHFQWFHFKVEGMAPATEHCFTL-----VNAGQSAYSHAWSGYQAVASYDGERWF----- 96
Query: 1179 QNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS 1235
R + Y L +++ + Y+ + ++ + + + +
Sbjct: 97 --RVPSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVERLAVGT 151
Score = 32.0 bits (72), Expect = 1.2
Identities = 7/125 (5%), Positives = 25/125 (20%), Gaps = 2/125 (1%)
Query: 1060 NQSQNYYYH-QNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYH 1118
Q +++ + ++ + L S + Y
Sbjct: 47 QHFQWFHFKVEGMAPATEHCFTLVNAGQSA-YSHAWSGYQAVASYDGERWFRVPSQYDAD 105
Query: 1119 QNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH 1178
Q + Y+ + ++ + + +++
Sbjct: 106 GLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVERLAVGTSVQGRDIELLRVRR 165
Query: 1179 QNRSQ 1183
S
Sbjct: 166 HPDSH 170
Score = 30.9 bits (69), Expect = 2.6
Identities = 8/115 (6%), Positives = 26/115 (22%), Gaps = 10/115 (8%)
Query: 1080 NLSLKYYCRRNLSQNYYCH-QNQSQNYYYHQN----QSQNYYYHQNQSQKYYYHQNLSQN 1134
L+++ Q ++ + + + Y + + Q S +
Sbjct: 37 RLAIRPDLASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHAWSGYQAVA-----SYD 91
Query: 1135 YYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQ 1189
+ Y Q Y+ + ++ + +
Sbjct: 92 GERWFRVPSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVER 146
>3sgh_A SUSD homolog; alpha-alpha superhelix, structural genomics, joint
center FO structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Bacteroides
thetaiotaomicron}
Length = 499
Score = 35.6 bits (81), Expect = 0.12
Identities = 10/102 (9%), Positives = 26/102 (25%), Gaps = 7/102 (6%)
Query: 1125 YYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQN 1184
Y + ++ + N+ + +N Y + + + +
Sbjct: 26 NVYACPQQNACQEINCMWASFSGQVTATANWSFGKNIFAYYNASEGHNDSSW-------G 78
Query: 1185 YYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNY 1226
Y + + +K Y + Y Q L+
Sbjct: 79 RLYGYIYPSFFLVENSTEKKGVIYAMAQLTRVYGMQLLASLQ 120
Score = 32.1 bits (72), Expect = 1.3
Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 22/134 (16%)
Query: 1039 NQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCH 1098
N +P + + + QN Q + ++
Sbjct: 6 NTNPYQPS---KVPASNLLSTMFNVYACPQQNACQEIN-------------CMWASFSGQ 49
Query: 1099 QNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYH 1158
+ N+ + +N Y + + + Y + S + + + Y
Sbjct: 50 VTATANWSFGKNIFAYYNASEGHNDSSW------GRLYGYIYPSFFLVENSTEKKGVIYA 103
Query: 1159 QNQSQKYYYHQNLS 1172
Q + Y Q L+
Sbjct: 104 MAQLTRVYGMQLLA 117
Score = 30.2 bits (67), Expect = 5.2
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 1110 NQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQ 1169
+ N Y Q+ + ++ + N+ +N Y + + +
Sbjct: 22 STMFNVYACPQQNA-CQEINCMWASFSGQVTATANWSFGKNIFAYYNASEGHNDSSW--- 77
Query: 1170 NLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYH 1209
Y + S + + Y Q + Y
Sbjct: 78 ---GRLYGYIYPSFFLVENSTEKKGVIYAMAQLTRVYGMQ 114
>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY),
catecholoxidase (CO), enzyme, SDS, cryo-EM, single
particle analysis; 6.80A {Androctonus australis} PDB:
3ixw_A
Length = 626
Score = 35.7 bits (82), Expect = 0.12
Identities = 28/282 (9%), Positives = 77/282 (27%), Gaps = 39/282 (13%)
Query: 986 AVPEIGQNYYFHQ---NQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSP 1042
+ E+ + + N++ + Q+ + + Y ++
Sbjct: 109 PIQEVFPDRFVPAETINRANKEASNHPDQQSIVVEAEETGNILDPEY--KLSYFREDIGI 166
Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYY-HQNLSLKYYCRRNLSQNYYC---- 1097
N +++H ++ Y N + + ++Y HQ + +Y R LS
Sbjct: 167 NAHHWHWHI--VYPATWNPTVMGKEKDRKGELFFYMHQQMCARYDSER-LSNGLQRMIPF 223
Query: 1098 --HQNQSQNYYYHQNQSQN-------YYYHQNQSQKYYYHQNLSQNYY-YHQNLSQNYYC 1147
+ Y H + + Q++ + ++ +Y
Sbjct: 224 HNFDEPLEGYAPHLTSLVSGLQYASRPEGYSIHDLSDVDVQDMVRWRERILDAINMHYIV 283
Query: 1148 HQNQSQNYYYHQNQSQ--------------KYYYHQ--NLSQNCYYHQNRSQNYYYHQNL 1191
++ ++ ++ + YY N + + +
Sbjct: 284 DKDNNKIPLDIEHGTDILGDIIESSDESKNVEYYGSLHNWGHVMMANITDPDHRFQENPG 343
Query: 1192 SQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
+ + Y +H + + H+ Y + SF
Sbjct: 344 VMSDTSTSLRDPIFYRWHRFIDNIFQEHKKSFHPYTKEELSF 385
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P
receptor, CI-MPR; P-lectin, protein transport,S binding
protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP:
b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Length = 432
Score = 35.3 bits (80), Expect = 0.13
Identities = 19/193 (9%), Positives = 47/193 (24%), Gaps = 25/193 (12%)
Query: 1041 SPNNYYYHLN-LSQ--NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC 1097
+ LN L + Y + + N+ ++ + S + +
Sbjct: 140 DRELKKHDLNPLIKTSGAYLVDDSDPDTSLFINVCRDIEVLRASSPQVRVCPTGAAACL- 198
Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQ----NYYCHQNQSQ 1153
+ + + N Y + + + S + C + +
Sbjct: 199 --VRGDRAFDVGRPQEGLKLVSNDRLVLSYVKEGAGQPDFCDGHSPAVTITFVCPSERRE 256
Query: 1154 NYY-YHQNQSQKYYY-----------HQNLSQNCYYHQNRSQNYYYHQNLSQ---NYYYH 1198
+S + S++C + Q LS+ +
Sbjct: 257 GTIPKLTAKSNCRFEIEWVTEYACHRDYLESRSCSLSSAQHDVAVDLQPLSRVEASDSLF 316
Query: 1199 QNQSQKNYYYHLN 1211
Y Y+L+
Sbjct: 317 YTSEADEYTYYLS 329
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 34.8 bits (79), Expect = 0.14
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 10/102 (9%)
Query: 314 EVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVP-E 372
EV +P V + + Q P P P+ P
Sbjct: 179 EVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNN 238
Query: 373 PTKPQLPEVLEPTKLQLPEDPE-PTKPQLPEDPETTKPQLPE 413
P P P+ P +P+ P P P++ + P+
Sbjct: 239 PDNPNNPDE--------PNNPDNPNNPDNPDNGDNNNSDNPD 272
Score = 33.6 bits (76), Expect = 0.30
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 293 VPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPE-- 350
V +P V K + ++ Q P P++P
Sbjct: 180 VIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNP 239
Query: 351 --PTKPQLPEDPE-PTKPQLPEVPEPTKPQLPE 380
P P P +P+ P P P+ + P+
Sbjct: 240 DNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNPD 272
Score = 31.7 bits (71), Expect = 1.4
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 7/106 (6%)
Query: 329 PTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQ 388
P + EV+ +P + K + ++ Q P
Sbjct: 172 PVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPN 231
Query: 389 LPEDP-EPTKPQLPEDPET-TKPQLPEVPEPTKLQLPEVPEPTKPE 432
P++P P P P++P P P+ P+ + P+
Sbjct: 232 NPDNPNNPDNPNNPDEPNNPDNPNNPDNPDN-----GDNNNSDNPD 272
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Length = 472
Score = 34.9 bits (80), Expect = 0.17
Identities = 27/210 (12%), Positives = 55/210 (26%), Gaps = 24/210 (11%)
Query: 1042 PNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQ-------NYYYHQNLSLKYYCRRNLSQN 1094
P N + L+ Y N + L Q N Y L+LK + R +
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228
Query: 1095 Y--------YCHQNQSQNYYYHQNQSQNYYYHQNQSQK--YYYHQNLS---QNYYYHQNL 1141
+ ++ + +Y +++ K + L N Y H +
Sbjct: 229 EGEGEKLVEEALEKAPGVTDVLRSAA-KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287
Query: 1142 SQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQ---NRSQNYYYHQNLSQNYYYH 1198
Y Q N + ++ + + + L+ +
Sbjct: 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347
Query: 1199 QNQSQKNYYYHLNLSQNYYYHQNLSQNYYY 1228
+ YY+ S+ + Y
Sbjct: 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding,
virulence gangrene determinant, C2 domain; 1.80A
{Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A
1qmd_A 1ca1_A 1gyg_A 1kho_A
Length = 370
Score = 34.5 bits (78), Expect = 0.21
Identities = 20/194 (10%), Positives = 57/194 (29%), Gaps = 17/194 (8%)
Query: 1031 SQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRN 1090
+ + L L Y + + + Y Q++++ ++ + +
Sbjct: 30 EPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLY------QDHFWDPDIDNNFSKDNS 83
Query: 1091 LSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQN 1150
Y ++ + N Q +Y L + +Y ++ Y+
Sbjct: 84 WYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFY---LGEAMHYFGDIDTPYHPANV 140
Query: 1151 QSQNYYYHQ--------NQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQS 1202
+ + H + Q N ++ + +N ++ +
Sbjct: 141 TAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTG 200
Query: 1203 QKNYYYHLNLSQNY 1216
+ YY H ++S ++
Sbjct: 201 KSIYYSHASMSHSW 214
Score = 29.9 bits (66), Expect = 5.3
Identities = 15/122 (12%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQSQKY----YYHQNLSQNYYYHQNLSQNYYCHQNQSQ 1153
+N+ ++ + + + Y +L Q++++ ++ N+ +
Sbjct: 27 SKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDIDNNFSKDNSWYL 86
Query: 1154 NYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYY-----HQNLSQNYYYH-QNQSQKNYY 1207
Y + L++ + N Q +Y H + YH N + +
Sbjct: 87 AYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSA 146
Query: 1208 YH 1209
H
Sbjct: 147 GH 148
>3cgh_A SUSD homolog; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; 1.70A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: a.118.8.6
Length = 516
Score = 34.1 bits (77), Expect = 0.29
Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 4/102 (3%)
Query: 1119 QNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH 1178
N +++ + L + + + + S+
Sbjct: 27 MNNLAGCVVSPDVN-TAQFTDCLLGGPLG-GYFADSNAGFTETISNFNPKDDWSRVFLKS 84
Query: 1179 QNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQ 1220
Y NL+Q QN + Y + + H+
Sbjct: 85 DKIIPTLY--SNLTQVKLVSQNTNDPVPYAIAQVIKVAAMHR 124
Score = 30.2 bits (67), Expect = 4.7
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 6/108 (5%)
Query: 1028 RNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYC 1087
NL+ + N + L + + N+ + S +
Sbjct: 28 NNLAGCVV---SPDVNTAQFTDCLLGGPLG-GYFADSNAGFTETISNFNPKDDWSRVFLK 83
Query: 1088 RRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNY 1135
+ Y N +Q QN + Y Q K ++ +
Sbjct: 84 SDKIIPTLY--SNLTQVKLVSQNTNDPVPYAIAQVIKVAAMHRVTDAF 129
Score = 30.2 bits (67), Expect = 5.5
Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 4/89 (4%)
Query: 1099 QNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYH 1158
N + N + + + N+ + S+ +
Sbjct: 27 MNNLAGCVV--SPDVNTAQFTDCLLGGPLGGYFADSNAGFTETISNFNPKDDWSRVFLKS 84
Query: 1159 QNQSQKYYYHQNLSQNCYYHQNRSQNYYY 1187
Y NL+Q QN + Y
Sbjct: 85 DKIIPTLY--SNLTQVKLVSQNTNDPVPY 111
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome,
transport, beta barrel, phosphorylation, fibronec II;
HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A*
Length = 627
Score = 34.2 bits (77), Expect = 0.30
Identities = 20/238 (8%), Positives = 53/238 (22%), Gaps = 47/238 (19%)
Query: 1034 YYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1093
C + + + S + + S+ Y +
Sbjct: 286 VVCPDEVRMDGCTLTDEQLLYSFNLSSLSTSTFKVTRDSRTYSVGVCTFAVGPEQGGCKD 345
Query: 1094 NYYCHQNQSQNYYYHQNQSQNY-YYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCH---Q 1149
C + ++ + + QS Y HQ+++ Y C
Sbjct: 346 GGVCLLSGTKGASFGRLQSMKLDYRHQDEAVVLSY----VNGDRCPPETDDGVPCVFPFI 401
Query: 1150 NQSQNYY-----------------YHQNQSQKYYYHQNLSQN------CYYHQNRSQNYY 1186
++Y Y ++ + H N + C ++ +
Sbjct: 402 FNGKSYEECIIESRAKLWCSTTADYDRDHEWGFCRHSNSYRTSSIIFKCDEDEDIGRPQV 461
Query: 1187 YHQNLSQNYY----------------YHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYY 1228
+ + + + + L+ + + +YY
Sbjct: 462 FSEVRGCDVTFEWKTKVVCPPKKLECKFVQKHKTYDLRLLSSLTGSWSLVHNGVSYYI 519
Score = 33.1 bits (74), Expect = 0.65
Identities = 24/229 (10%), Positives = 52/229 (22%), Gaps = 11/229 (4%)
Query: 993 NYYFH-QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNL 1051
Y F+ + S + + S+ Y + C + + + L
Sbjct: 305 LYSFNLSSLSTSTFKVTRDSRTYSVGVCTFAVGPEQGGCKDGGVCLLSGTKGASFGRLQS 364
Query: 1052 SQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQ 1111
+ Y HQ+++ Y + + N C +
Sbjct: 365 MKLDYRHQDEAVVLSYVNGDRCPPETDDGVPCVFPFIFNGKSYEECIIESRAKLWC---- 420
Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNY---YYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYH 1168
S Y ++ + H N + + + +
Sbjct: 421 STTADYDRDHEWGFCRHSNSYRTSSIIFKCDEDEDIGRPQVFSEVRGCDVTFEWKTKVVC 480
Query: 1169 QNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYY 1217
C + Q + + Y++NL Q Y
Sbjct: 481 PPKKLECKFVQKHKTYDLRLLSSLTGSWS---LVHNGVSYYINLCQKIY 526
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 308
Score = 33.3 bits (76), Expect = 0.39
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 538 LLPPKPKP-ELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII---PPK 593
L P L KP L L K + ++ + P+ I PP+
Sbjct: 23 LFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEITFDPPE 82
Query: 594 PEPEILIPPKPEPELLLPPKPEPEI 618
PE IPP+ E P + E EI
Sbjct: 83 K-PEGYIPPRAVDE--PPFESEEEI 104
Score = 32.1 bits (73), Expect = 1.1
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 518 LLPPKSEP-ELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPES 576
L P + L KP L + P L K + + + P E
Sbjct: 23 LFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPD-------EE 75
Query: 577 ELLLPPKPEPELIIPPKPEPEILIPPKPEPEL 608
PP+ PE IPP+ E P + E E+
Sbjct: 76 ITFDPPEK-PEGYIPPRAVDE--PPFESEEEI 104
Score = 29.8 bits (67), Expect = 5.0
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 555 PEKLLLPPKPKP-KLLLPPKPESELLLPPKPEPELIIPPKP-EPEILIPPKPEPELLLPP 612
L P L KP L + P + K + +I + P+
Sbjct: 19 RRIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPD----- 73
Query: 613 KPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPEL 648
E PP+ PE +PP+ E P + E E+
Sbjct: 74 --EEITFDPPEK-PEGYIPPRAVDE--PPFESEEEI 104
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 33.1 bits (75), Expect = 0.68
Identities = 14/73 (19%), Positives = 19/73 (26%)
Query: 566 PKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPE 625
L PP + + + P P PE +PE LP +
Sbjct: 6 TCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRA 65
Query: 626 PELLLPPKPEPEI 638
PP P
Sbjct: 66 EVPTKPPLPPART 78
Score = 32.3 bits (73), Expect = 1.1
Identities = 15/69 (21%), Positives = 21/69 (30%)
Query: 619 LLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPEL 678
L PP + + + P P PE S ++PE LP +
Sbjct: 9 LDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVP 68
Query: 679 LLPPKPEPE 687
PP P
Sbjct: 69 TKPPLPPAR 77
Score = 32.3 bits (73), Expect = 1.1
Identities = 13/69 (18%), Positives = 20/69 (28%)
Query: 589 IIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPEL 648
+ PP + + + P P PE +PE LP +
Sbjct: 9 LDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVP 68
Query: 649 LLPPKPESE 657
PP P +
Sbjct: 69 TKPPLPPAR 77
Score = 31.1 bits (70), Expect = 2.5
Identities = 14/69 (20%), Positives = 19/69 (27%)
Query: 609 LLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEI 668
L PP + + + P P PE +PE LP +
Sbjct: 9 LDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVP 68
Query: 669 LLPPKPEPE 677
PP P
Sbjct: 69 TKPPLPPAR 77
Score = 31.1 bits (70), Expect = 2.8
Identities = 14/69 (20%), Positives = 19/69 (27%)
Query: 579 LLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEI 638
L PP + + + P P PE +PE LP +
Sbjct: 9 LDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVP 68
Query: 639 LLPPKPEPE 647
PP P
Sbjct: 69 TKPPLPPAR 77
Score = 30.4 bits (68), Expect = 4.3
Identities = 15/69 (21%), Positives = 18/69 (26%)
Query: 559 LLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEI 618
L PP K + P P PE +PE LP +
Sbjct: 9 LDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVP 68
Query: 619 LLPPKPEPE 627
PP P
Sbjct: 69 TKPPLPPAR 77
Score = 29.6 bits (66), Expect = 7.1
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 528 LLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPE 587
L PP + + + P P PE + +PE LP +
Sbjct: 9 LDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWR-GAVIEPEQGTELPSRRAEV 67
Query: 588 LIIPPKPEPEI 598
PP P
Sbjct: 68 PTKPPLPPART 78
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like
domain, produc structure, DNA damage, DNA repair,
exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP:
c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Length = 482
Score = 32.3 bits (72), Expect = 0.99
Identities = 21/233 (9%), Positives = 58/233 (24%), Gaps = 12/233 (5%)
Query: 989 EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
+ + + N+ + + RN Y Q N+ +
Sbjct: 84 FAARIHSLFTVPKTCILGYNNVRFDDEV-----TRNIFYRNFYDPYAWSW-QHDNSRWDL 137
Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYH 1108
L++ + Y + + N+ + + ++ L++ + N ++ H + Y
Sbjct: 138 LDVMRACYALRPEGINWPENDDGLPSF------RLEHLTKANGIEHSNAHDAMADVYATI 191
Query: 1109 QNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYH 1168
+ H+N + H + +
Sbjct: 192 AMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAW 251
Query: 1169 QNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQN 1221
++N + + + L + + + K H N
Sbjct: 252 HPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHIN 304
>3ejn_A SUSD homolog; structural genomics, joint center for structur
genomics, JCSG, protein structure initiative, PSI-2,
sugar protein; HET: MSE; 1.50A {Bacteroides fragilis nctc
9343} SCOP: a.118.8.6
Length = 474
Score = 32.0 bits (72), Expect = 1.2
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQK 1204
+ + Y + Q S + YY R YY NL + +
Sbjct: 28 MNAFKRGTDGMYATKKVIQADGE----SADQYYKWTRGSFGYY-DNLRNVQKMGEEAERV 82
Query: 1205 NYYYHLNLSQ---NYYYHQ 1220
N + L++ YY+++
Sbjct: 83 NAPVYTALTKFFRAYYFYE 101
Score = 32.0 bits (72), Expect = 1.4
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 5/69 (7%)
Query: 1160 NQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYH 1219
Q + + Y + Q S + YY + YY +L Q
Sbjct: 24 TQIC-MNAFKRGTDGMYATKKVIQADGE----SADQYYKWTRGSFGYYDNLRNVQKMGEE 78
Query: 1220 QNLSQNYYY 1228
Y
Sbjct: 79 AERVNAPVY 87
Score = 30.9 bits (69), Expect = 3.4
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 16/88 (18%)
Query: 994 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQ 1053
+ + Y + + Q S + Y + YY +L Q
Sbjct: 28 MNAFKRGTDGMYATKKVIQADGE--------------SADQYYKWTRGSFGYYDNLRNVQ 73
Query: 1054 NYYFHQNQSQNYYYHQ--NLSQNYYYHQ 1079
+ Y + YY+++
Sbjct: 74 KMGEEAERVNAPVYTALTKFFRAYYFYE 101
Score = 29.7 bits (66), Expect = 7.0
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYH-QNLSQNYYCHQNQSQ 1153
+ + Y + Q +Q YY S YY + +N+ + + +
Sbjct: 28 MNAFKRGTDGMYATKKVIQADGESADQ---YYKWTRGSFGYYDNLRNVQKMGEEAERVNA 84
Query: 1154 NYYYHQNQSQKYYYHQNLS 1172
Y + + YY L+
Sbjct: 85 PVYTALTKFFRAYYFYELT 103
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 31.9 bits (72), Expect = 1.3
Identities = 15/151 (9%), Positives = 36/151 (23%), Gaps = 7/151 (4%)
Query: 1085 YYCRRNLSQNYYCHQNQSQNYYYHQNQS------QNYYYHQNQSQKYYYHQNLSQNYYYH 1138
N + + N Q + S +Y+ + +H
Sbjct: 63 NRAGMNTKSVNETGKEKLLISKIFTNPDLFDKNFQRIEPKRLTSLQYFSIYLGYISIAHH 122
Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYH 1198
N+ + S + + ++ + + N + + +
Sbjct: 123 YNIEVPTFNKTITSDLKHLYDKRTTFFGIDCEIVSNLLNVLPYEEVSSIIKPMYPIVDSF 182
Query: 1199 QNQSQKNYYYHL-NLSQNYYYHQNLSQNYYY 1228
L N ++NL + YY
Sbjct: 183 GKDYDLTIQTVLKNALTISIMNRNLKEAQYY 213
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial
odontopatho hydrolase; 1.50A {Prevotella intermedia} PDB:
3bba_A
Length = 321
Score = 31.6 bits (71), Expect = 1.4
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 18/87 (20%)
Query: 1137 YHQNLSQNYYCHQNQSQNY-------------YYHQ-----NQSQKYYYHQNLSQNCYYH 1178
+ Q + N + + Y + S +Y N
Sbjct: 94 WGQQMPYNKLLPKTKKGRLITGAVATATAQVLNYFKYPVRGIGSHTVHYPANDPSGVAIS 153
Query: 1179 QNRSQNYYYHQNLSQNYYYHQNQSQKN 1205
+ Y N+ NY + +++ N
Sbjct: 154 ADFGNTTYDWANMKDNYSGNYTEAEAN 180
>3pme_A Type C neurotoxin; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, botulinum
neurotoxin; 1.56A {Clostridium botulinum} PDB: 3ogg_A
3n7j_A 3obr_A 3obt_A* 3rmx_A 3rmy_A
Length = 420
Score = 31.8 bits (71), Expect = 1.5
Identities = 30/221 (13%), Positives = 54/221 (24%), Gaps = 38/221 (17%)
Query: 989 EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
+I Y ++ ++ N LK+ YY + Y
Sbjct: 209 DINIVYEGQILRN----VIKDYWGNP-------LKF------DTEYYMINYNYIDRYIAP 251
Query: 1049 LNLSQNYYFHQNQSQNYYYHQ------NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
N + + S+ Y + Y N + S+ Y ++
Sbjct: 252 KNNILVLVQYSDISKLYTKNPITIKSAANKNPYSRILNGDDIMFHMLYDSREYMIIRDTD 311
Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQN-LSQNYYCHQNQSQNYYYHQNQ 1161
Y Q + N + +N +SQN YC Q S
Sbjct: 312 TIYA--TQGGQCSKNCVYALKLQSNLGNYGIGIFSIKNIVSQNKYCSQIFSSFMK----- 364
Query: 1162 SQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQS 1202
+ Y R + ++ Y + S
Sbjct: 365 -------NTMLLADIYKPWRFSFENAYTPVAVTNYETKLLS 398
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.8 bits (72), Expect = 1.5
Identities = 15/100 (15%), Positives = 27/100 (27%)
Query: 278 EDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV 337
+D + + + +T I + P ++ + + + Q P P+
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQG 399
Query: 338 LEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQ 377
P P P P P P PQ
Sbjct: 400 YPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQ 439
Score = 29.1 bits (65), Expect = 9.8
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 573 KPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 632
+ + P PP+ P PP+ P PP+ P PP+ P PP
Sbjct: 378 MQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPP---PPQGAPPQGAPP 434
Query: 633 KPEPE 637
P+
Sbjct: 435 AAPPQ 439
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania
major} SCOP: d.92.1.3
Length = 478
Score = 31.6 bits (70), Expect = 1.6
Identities = 27/283 (9%), Positives = 65/283 (22%), Gaps = 29/283 (10%)
Query: 941 FFNEPKSPPEKPHHSPIPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQ 1000
FF + + P+ PV+N + +++Y G E +
Sbjct: 177 FFEDARIVANVPNVRGKNFDVPVINSSTAVAKAREQY-GCDTLEYLEVEDQGGAGSAGSH 235
Query: 1001 SQNYYYHQNL---SQNYYYHQNLSLKYYCRRNLSQ-NYYCHQNQSPNNYYYHLNLSQNYY 1056
+ L + Y+ L++ + Q ++ + + + +
Sbjct: 236 IKMRNAQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAE---VMPWGQNAGCAFLTN 292
Query: 1057 FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYY 1116
QS + + C + C +
Sbjct: 293 KCMEQSVTQWPA-------MFCNESEDAIRCPTSRLSLGACGVTRHPGL---------PP 336
Query: 1117 YHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY 1176
Y Q + + +Y + C Q S+ + + + C
Sbjct: 337 YWQYFTDPSLAGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAAR-----CI 391
Query: 1177 YHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYH 1219
R + + Y + + + Y
Sbjct: 392 DGAFRPKATDGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYT 434
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 31.7 bits (71), Expect = 1.6
Identities = 23/148 (15%), Positives = 43/148 (29%), Gaps = 8/148 (5%)
Query: 120 NNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETTEKETGK 179
+++ +KW + V + L + V R E++ +
Sbjct: 180 SSEKTLKWLEKKVNQTVVALKA--------NNVNVGARVQSSAYFSGGQVSRDKEEDYVR 231
Query: 180 IAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATD 239
A + + L+ P A P S K S E +E + D
Sbjct: 232 YAHGLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDL 291
Query: 240 EALKAIESQRRVKRRAAKTRDKIKENID 267
+ K ++ AK ++ID
Sbjct: 292 KTGKKNSKMTAAQKALAKVDKSGMKSID 319
>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease,
ganglioside, metal-B toxin, protease, membrane, receptor,
secreted; HET: BGC GAL SIA NGA; 1.6A {Clostridium
botulinum} PDB: 2vua_A 3fuo_A
Length = 444
Score = 31.8 bits (71), Expect = 1.6
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 30/178 (16%)
Query: 989 EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
EI Y N ++ +Y L+Y + YY PN Y
Sbjct: 230 EIKDLYDNQSNSG----ILKDFWGDY-------LQY------DKPYYMLNLYDPNKYVDV 272
Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYH 1108
N+ Y + + N+ N ++ + +N + Y
Sbjct: 273 NNVGIRGYMYLKGPRGSVMTTNIYLNSSLYRGTKFIIK-KYASGNKDNIVRNNDRVYINV 331
Query: 1109 QNQSQNY----YYHQNQSQKYYYHQNLSQNYYYHQNL--------SQNYYCHQNQSQN 1154
+++ Y Q +K + Q + C N N
Sbjct: 332 VVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDN 389
>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin
biosynthesis, metal-bindin monooxygenase, oxidoreductase,
secreted; 1.97A {Manduca sexta}
Length = 684
Score = 31.9 bits (72), Expect = 1.7
Identities = 24/277 (8%), Positives = 65/277 (23%), Gaps = 46/277 (16%)
Query: 996 FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNY-YCHQNQSPNNYYYHLNLSQN 1054
F + + + N + Q Y ++ N +++H +L
Sbjct: 160 FLRAREVSNVVISGSRMPVNVPINYTANTT---EPEQRVAYFREDIGINLHHWHWHL--V 214
Query: 1055 YYFHQNQSQNYYYHQNLSQNYYY-HQNLSLKYYCRRNLSQN-----------------YY 1096
Y F + ++ + +YY HQ + +Y R + Y+
Sbjct: 215 YPF-DSADRSIVNKDRRGELFYYMHQQIIGRYNVER-MCNGLPQVKPFSDFSAPIEEGYF 272
Query: 1097 CHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQ----NYYCHQNQS 1152
+ + + ++ + + + + N
Sbjct: 273 PKLDSQVASRTWPPRFAGSVFRNLDRTVDQVKIDVRKLFTWRDQFLEAIQKMAIKMPNGR 332
Query: 1153 QNYYYHQN----------------QSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYY 1196
+ Y N+ + + + + Q
Sbjct: 333 ELPLDEVTGIDMLGNLMESSIISPNRGYYGDLHNMGHVFAAYTHDPDHRHLEQFGVMGDS 392
Query: 1197 YHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
+ Y +H + + ++ Y + F
Sbjct: 393 ATAMRDPFFYRWHRFVDDVFNIYKEKLTPYTNERLDF 429
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 31.5 bits (71), Expect = 1.7
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Query: 396 TKPQLPEDPETTKPQLPEVPEPTKLQLPEV-PEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
ET + +++ + L E + L E
Sbjct: 15 VPRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAEN 74
Query: 455 ILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLP 490
+ + + + ++K+EP+L E +L P
Sbjct: 75 HKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFP 110
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide,
dipteran specificity, conformational change; 1.75A
{Bacillus thuringiensis serovarisraelensis}
Length = 558
Score = 31.7 bits (71), Expect = 1.8
Identities = 23/213 (10%), Positives = 57/213 (26%), Gaps = 12/213 (5%)
Query: 1032 QNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNL 1091
Y Q Y H N + +N Q ++ N Y + ++++ L
Sbjct: 124 DQLYNTMVQYTKEYIAHSITWYNKGL--DVLRNKSNGQWITFNDYK-REMTIQVLDILAL 180
Query: 1092 SQNY----YCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL-----S 1142
+Y Y ++ Y +S L +L
Sbjct: 181 FASYDPRRYPADKIDNTKLSKTEFTREIYTALVESPSSKSIAALEAALTRDVHLFTWLKR 240
Query: 1143 QNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQS 1202
+++ + + N+ Y + + Q + + + N ++
Sbjct: 241 VDFWTNTIYQDLRFLSANKIGFSYTNSSAMQESGIYGSSGFGSNLTHQIQLNSNVYKTSI 300
Query: 1203 QKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS 1235
+++ +Y + + Y + T
Sbjct: 301 TDTSSPSNRVTKMDFYKIDGTLASYNSNITPTP 333
Score = 30.2 bits (67), Expect = 5.4
Identities = 27/233 (11%), Positives = 64/233 (27%), Gaps = 22/233 (9%)
Query: 994 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNY---YCHQNQSPNNYYYHLN 1050
Y + +N Q ++ N Y + ++++ L +Y ++ N
Sbjct: 145 YNKGLDVLRNKSNGQWITFNDYK-REMTIQVLDILALFASYDPRRYPADKIDNTKLSKTE 203
Query: 1051 LSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ-NYYCHQNQSQNYYY-- 1107
++ Y +S + L +L L + +++ + +
Sbjct: 204 FTREIYTALVESPSSKSIAALEAALTRDVHLF------TWLKRVDFWTNTIYQDLRFLSA 257
Query: 1108 HQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
++ Q Y N + L+ N Y + + N+ K +
Sbjct: 258 NKIGFSYTNSSAMQESGIYGSSGFGSNLTHQIQLNSNVY--KTSITDTSSPSNRVTKMDF 315
Query: 1168 HQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQ 1220
++ Y+ N + + N + N Y H
Sbjct: 316 YKIDGTLASYNSNITPT-------PEGLRTTFFGFSTNENTPNQPTVNDYTHI 361
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 30.8 bits (68), Expect = 2.4
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 546 ELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEI----LIP 601
EL P P PE + PP+P P + + +P ++ + E P
Sbjct: 6 ELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKP 65
Query: 602 PKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPE 647
P E+ + E + + EPE+LL P +P
Sbjct: 66 GIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPV 111
Score = 30.4 bits (67), Expect = 3.8
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL--LPPKPEPE 587
PP PE E+ P P PE PE + + +P E+ P P E
Sbjct: 12 PPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGIPAAE 71
Query: 588 LIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPE 627
+ I E + + EPE+LL P +P
Sbjct: 72 VGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPV 111
Score = 29.6 bits (65), Expect = 6.0
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 419 KLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPV 478
+L P+ P P P P + + E PE +++ +P+++ ++ +K
Sbjct: 6 ELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVI--NQPMMMAARQLHDEARKWSS 63
Query: 479 LPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPE 526
P P E+ + E + + EP+LLL P ++P
Sbjct: 64 KPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPV 111
>4f53_A SUSD homolog; TPR-like protein, mucin O-glycan binding, structural
genomic center for structural genomics, JCSG; 2.25A
{Bacteroides ovatus}
Length = 520
Score = 31.0 bits (69), Expect = 2.5
Identities = 7/100 (7%), Positives = 21/100 (21%), Gaps = 6/100 (6%)
Query: 1121 QSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQN 1180
+ + Y L + N + Y + + +
Sbjct: 33 LNLQDLMMPEQENFSQYVDCLMAGAFSGYVADSNLGTGWSGRYATYNPSDDWKKIPF--- 89
Query: 1181 RSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQ 1220
N +Y + + + + L + +
Sbjct: 90 ---NDFYSKFYPDYFNLKNQSDDELFLSLAELYRIVVMLR 126
Score = 29.9 bits (66), Expect = 7.2
Identities = 11/135 (8%), Positives = 38/135 (28%), Gaps = 17/135 (12%)
Query: 1039 NQSPNNYYYHLNLSQNYYFHQNQSQNYY-YHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC 1097
N++P+ ++ ++Y ++ + N +N+ + + L +
Sbjct: 10 NKNPHEPD-QNDMGVDWYLVRSLALNLQDLMMPEQENFSQYVD---------CLMAGAFS 59
Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYY 1157
N + Y + +K + N +Y + + +
Sbjct: 60 GYVADSNLGTGWSGRYATYNPSDDWKKIPF------NDFYSKFYPDYFNLKNQSDDELFL 113
Query: 1158 HQNQSQKYYYHQNLS 1172
+ + ++
Sbjct: 114 SLAELYRIVVMLRVT 128
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 30.9 bits (69), Expect = 2.6
Identities = 21/252 (8%), Positives = 64/252 (25%), Gaps = 13/252 (5%)
Query: 210 RTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDKIKENIDPE 269
++ + + ++ + + A E++ R+ + + ++ +++
Sbjct: 60 LSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDV 119
Query: 270 LGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEP 329
G L +++ E + L + +L + + +L
Sbjct: 120 CGRLVQYRGEVQAMLGQST------EELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAG 173
Query: 330 TKPQLPEV-------LEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVL 382
+ L P Q + + E ++
Sbjct: 174 AREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRT 233
Query: 383 EPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKT 442
++ E + +L E + + Q K + + E + + E +
Sbjct: 234 RDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVEKVQA 293
Query: 443 QLPEVPEPTKPQ 454
P
Sbjct: 294 AEGTSAAPVPSD 305
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Length = 535
Score = 31.0 bits (70), Expect = 3.0
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 15/147 (10%)
Query: 968 NSELV-----YKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYY-HQNLSQNYYYHQNLS 1021
+E + Y +G G + + + + + +
Sbjct: 256 PTESLIEISFYSPTVSGNSDPVGRIGKWNGVKTTAIAGVRGSCAANVKVVHTFVLDWRED 315
Query: 1022 LKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNL 1081
+ RR+LS Y Q + S + + Q QNY
Sbjct: 316 VSDI-RRDLSIANY--QYTDTKKSLWVAGASDTDESAAEKDADPTKAQKNKQNYT----- 367
Query: 1082 SLKYYCRRNLSQNYYCHQNQS-QNYYY 1107
K+ ++ ++ N + + ++S N+Y+
Sbjct: 368 PAKWDIQKYVTTNSFINNDKSNVNWYF 394
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 30.4 bits (67), Expect = 3.1
Identities = 16/127 (12%), Positives = 29/127 (22%)
Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL 579
P + PE+ + +PEP P + + PPK P + + L
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 580 LPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEIL 639
+ P E +P + + P +
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATV 122
Query: 640 LPPKPEP 646
Sbjct: 123 NGTVEGG 129
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/127 (12%), Positives = 29/127 (22%)
Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELI 589
P PE+ + +P+P P K + P + PPK + + L
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELL 649
+ P E +P + + P +
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATV 122
Query: 650 LPPKPES 656
Sbjct: 123 NGTVEGG 129
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.1 bits (70), Expect = 3.2
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 350 EPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKP 409
+P P P P P P P + DP+P K + P++P +P
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAP----TGDPKPKKNKKPKNPTPPRP 56
Query: 410 Q-LPEVPEPTKLQLPEVPEPTKPELPEVP 437
L E K E +
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDAN 85
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET:
CSF; 2.25A {Campylobacter jejuni}
Length = 291
Score = 30.2 bits (67), Expect = 3.8
Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 12/133 (9%)
Query: 971 LVYKDKY-TGVGGYFGAVPEIGQNYYFHQNQSQN----YYYHQNLSQNYYYHQNLSLK-- 1023
L YK+ Y +G+ Y + G +Y F Q + + S + +N +K
Sbjct: 143 LGYKEIYLSGIDFY-----QNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKAL 197
Query: 1024 YYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSL 1083
+ + YC S + L + N F + NY + + Y +
Sbjct: 198 EFLEKTYKIKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKN 257
Query: 1084 KYYCRRNLSQNYY 1096
+ + + +N Y
Sbjct: 258 INFKKIKIKENIY 270
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C
3jyv_C*
Length = 240
Score = 30.1 bits (68), Expect = 3.8
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 573 KPESELLLPPKPEPEL--IIPPKPEPEILIPPKP--EPELLLPPKPEPE 617
+ ++ PK P+ II PK E IL P P + EP
Sbjct: 190 RDPAKSRTGPKALPDAVTIIEPKEEEPILAPSVKDYRPAEETEAQAEPV 238
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 30.4 bits (68), Expect = 3.9
Identities = 14/106 (13%), Positives = 24/106 (22%), Gaps = 8/106 (7%)
Query: 521 PKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLL 580
S+ + + PE + P + +
Sbjct: 218 TASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGE---EKKKE 274
Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPEL-LLPPKPEPEILLPPKPE 625
K E E PE + LL P + ++ L K
Sbjct: 275 KEKEEQEERETKTPECP---SHTQPLGVYLLTPAVQ-DLWLRDKAT 316
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus
familiaris} SCOP: b.29.1.12 b.104.1.1
Length = 424
Score = 30.5 bits (68), Expect = 4.2
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 347 EDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPET 406
EDPE KP+ ++ P+ P + + P+ +P+ DP+
Sbjct: 234 EDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDA 293
Query: 407 TKPQLPEVPEPTKLQLPEVPEPTKPELP 434
KP+ + + + P++ P P
Sbjct: 294 EKPEDWDEDMDGEWEAPQIANPKCESAP 321
Score = 29.4 bits (65), Expect = 8.6
Identities = 32/161 (19%), Positives = 51/161 (31%), Gaps = 3/161 (1%)
Query: 313 PEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPE 372
P V + + PE +P + P+D P D E TKP E
Sbjct: 225 PPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDE 284
Query: 373 PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
P P+ +P D E PQ+ +P+ V + + P KP
Sbjct: 285 PEYVPDPDAEKPEDWDEDMDGEWEAPQIA-NPKCESAPGCGVWQRPMIDNPNYKGKWKPP 343
Query: 433 LPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLD 473
+ + P P + P + EP + + L+
Sbjct: 344 MIDNPNYQGIWKP--RKIPNPDFFEDLEPFKMTPFSAIGLE 382
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 30.3 bits (67), Expect = 4.5
Identities = 19/130 (14%), Positives = 30/130 (23%), Gaps = 16/130 (12%)
Query: 312 LPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVP 371
LP +P P +P+ + + D ++P PT P P+V
Sbjct: 14 LPMLPAPPP------GQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVT 67
Query: 372 EPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKP 431
P D T P
Sbjct: 68 A----------AAGAGPRVRQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAH 117
Query: 432 ELPEVPELTK 441
+ P VP++
Sbjct: 118 DTPPVPDVDS 127
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 30.2 bits (67), Expect = 5.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 362 PTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLP 401
PTKP P P + + LEP + + EPT P
Sbjct: 309 PTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase,
geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl
diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB:
2onh_A*
Length = 543
Score = 30.1 bits (67), Expect = 5.3
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 1007 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYY 1066
+L Y ++ L + +R + + + P+ L L+ + Q+Q
Sbjct: 179 DGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELA-ILDLNIVQAQFQE 237
Query: 1067 YHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC 1097
+ + + + + R L + Y+
Sbjct: 238 ELKESFRWWRNTGFVEKLPFARDRLVECYFW 268
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla
glycoprotein, secreted, storage protein, oxygen
transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi}
Length = 674
Score = 30.3 bits (68), Expect = 5.3
Identities = 20/165 (12%), Positives = 50/165 (30%), Gaps = 21/165 (12%)
Query: 1055 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQN 1114
F + + + + + Y + +Y Y+ N S
Sbjct: 146 ELFVNIDTTYKMFRTKMQNGLINPE------------AAVEYGIVKEDNHYVYYSNYSNA 193
Query: 1115 YYYHQNQSQKYYYHQNLSQN-YYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQ 1173
Y+ + + Y+ +++ N YY+ ++ + ++ Y + + + Y++
Sbjct: 194 ITYYNEEQRLAYFTEDIGLNAYYFFFHI---HLPFWWTAEKYGNLKERRGEMYHYFYDQL 250
Query: 1174 NCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYY 1218
Y+ R L + K +Y L S +
Sbjct: 251 LTRYYFER-----LTNGLGTIPEFSWYSPVKTGHYPLLTSYYTPF 290
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 29.6 bits (66), Expect = 5.4
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 341 TTLQLPEDPEPTKPQLPEDPE-PTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
+ D +P P P++P P P P EP P P P++P+
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNP--DEPNNPDNPN--------NPDNPDNGDNN 260
Query: 400 LPEDPETT 407
++P+
Sbjct: 261 NSDNPDAA 268
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane
binding, calcium binding, hydrolase; 2.5A {Clostridium
absonum} SCOP: a.124.1.1 b.12.1.3
Length = 370
Score = 30.0 bits (66), Expect = 5.5
Identities = 21/188 (11%), Positives = 60/188 (31%), Gaps = 19/188 (10%)
Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
+ L + + + + Y Q++++ + + +Y N
Sbjct: 42 EKNLHKFQLGSTFPDYDPNAYSLY------QDHFWDPDTDHNFTQDNKWYLSYAVPDNAE 95
Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQS 1162
++N + N + +Y L Q +Y +L+ Y+ + + H
Sbjct: 96 SQTRKFATLAKNEWDKGNYEKAAWY---LGQGMHYFGDLNTPYHAANVTAVDSPGH---- 148
Query: 1163 QKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQN----YYY 1218
+ + ++ + Y ++ + N ++ + Y ++ YY
Sbjct: 149 --VKFETYAEERKDTYRLDTTGYNTDDAFYKDTLKNDNFNEWSKGYCKYWAKKAKNLYYS 206
Query: 1219 HQNLSQNY 1226
H +S ++
Sbjct: 207 HATMSNSW 214
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.2 bits (67), Expect = 5.9
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 12/167 (7%)
Query: 162 KPVERKDGKETTEKETGKIAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDS 221
+ E GKE + T ++ T + + K + E E + T+
Sbjct: 797 RMYEEASGKEVEKVATAVLST--TARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
Query: 222 KEDIENRVDNNDGTIATDEALK-AIESQRRVKRRAAKTRDKIKEN----IDPELGNLSDL 276
K E + ++ + + +++ R+ + ++ IK++ + GN +
Sbjct: 855 KGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVV 914
Query: 277 NEDLKKPGEPEVQTPIVPEPTKQELPEVPETTK----PQLPEVPEPT 319
++P EP V + P +P K P +P+
Sbjct: 915 VLRDREPKEPVALIETVRQMKDVNAP-LPTPFKVDDNVDFPSALQPS 960
Score = 29.8 bits (66), Expect = 7.4
Identities = 18/166 (10%), Positives = 39/166 (23%), Gaps = 20/166 (12%)
Query: 286 PEVQTPIVPEPTKQELPEVPETTKPQLPEV-PEPTKSQLPEVPEPTKPQLPEVLEPTTLQ 344
+ E K + T + + + K E + + + E
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 345 LPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPT--------KLQLPEDP--- 393
+ E E + ++ + Q + K +
Sbjct: 857 IKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVL 916
Query: 394 EPTKPQLPEDPETTKPQL----PEVPEPTKLQLPEVPEPTKPELPE 435
+P+ P T Q+ +P P K+ P +
Sbjct: 917 RDREPKEPVALIETVRQMKDVNAPLPTPFKVD----DNVDFPSALQ 958
>3gzs_A Uncharacterized SUSD superfamily protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; 2.09A {Bacteroides fragilis}
Length = 515
Score = 29.9 bits (66), Expect = 6.1
Identities = 10/111 (9%), Positives = 30/111 (27%), Gaps = 4/111 (3%)
Query: 1110 NQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQ 1169
+ + + N Q NL+ + + ++ ++ +++ Y+
Sbjct: 29 PNLEKSVIPIGTASESTEPVNRYQ---IGVNLAGDAWAGYMSPRDNKFNGSKNFTNYFMY 85
Query: 1170 NLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQ 1220
N Y + Y + + Y + + H+
Sbjct: 86 ENWVNYVY-SFMVTDVYSPWMQIKRISQDEGTRNDEIYALAQIIKIAALHR 135
>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus
cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A*
1p6e_A* 2fgn_A 2huc_A
Length = 245
Score = 29.6 bits (65), Expect = 6.6
Identities = 12/99 (12%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 1138 HQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY--------YHQNRSQNYYYHQ 1189
H + +++ +Q + L Y Y + +++Y
Sbjct: 14 HLWIVNRAIDIMSRNTTLVKQDRVAQLNEWRTELENGIYAADYENPYYDNSTFASHFYDP 73
Query: 1190 NLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYY 1228
+ + Y Q+++ + L+ Y ++++ Q ++Y
Sbjct: 74 DNGKTYIPFAKQAKETGAKYFKLAGESYKNKDMKQAFFY 112
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A
phosphatase, motor protein, structur protein, membrane
protein; 1.70A {Plasmodium falciparum 3D7}
Length = 342
Score = 29.5 bits (65), Expect = 7.4
Identities = 11/120 (9%), Positives = 34/120 (28%)
Query: 1114 NYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQ 1173
Q + KY+ ++ + + N+ + + Y +
Sbjct: 14 KDTKGQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMY 73
Query: 1174 NCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
++ ++++ + N + + Y + + NY+YH +
Sbjct: 74 MPFFTVLGTRDWTGNYNAQLLKGQGIYIEKNGETSIEKDADATNYPKWIMPNYWYHYFTH 133
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 29.4 bits (67), Expect = 7.8
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 456 LDKKEPVLLDKKEPVLLDKKEPVLPPKPEPE 486
PVL+D V++ K+E +PP+ + E
Sbjct: 515 FSIDGPVLVD----VVVAKEELAIPPQIKLE 541
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 29.2 bits (66), Expect = 8.8
Identities = 10/89 (11%), Positives = 22/89 (24%)
Query: 192 GTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRV 251
G+ K + + + D + KA +V
Sbjct: 1 GSGMKETAAAKFGERQHMDSPDLGTDDDDKAMACSAGPSGFFTRLGRLIKEKAKSDVEKV 60
Query: 252 KRRAAKTRDKIKENIDPELGNLSDLNEDL 280
+KTR+ + + L + +
Sbjct: 61 FSGFSKTRENLAVIDELLLFWNLAETDRV 89
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor
complex; HET: DFU; 1.60A {Bifidobacterium longum subsp}
PDB: 3mo4_A* 3uet_A*
Length = 478
Score = 29.2 bits (65), Expect = 9.5
Identities = 12/117 (10%), Positives = 29/117 (24%)
Query: 1105 YYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQK 1164
Y ++++ Y +Y Q Y S + +N +
Sbjct: 131 YLSPWDRTEESYGKGKAYDDFYVGQLTELLTQYGPIFSVWLDGANGEGKNGKTQYYDWDR 190
Query: 1165 YYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQN 1221
YY Q + + N + + ++ L+ ++
Sbjct: 191 YYNVIRSLQPDAVISVCGPDVRWAGNEAGHVRDNEWSVVPRRLRSAELTMEKSQQED 247
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic acid;
HET: SO4; 2.25A {Plasmodium falciparum} SCOP: a.264.1.1
a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 29.2 bits (65), Expect = 9.6
Identities = 11/141 (7%), Positives = 37/141 (26%), Gaps = 2/141 (1%)
Query: 1083 LKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNY--YYHQN 1140
K C+ N + Y ++ + S++Y + +N Y +
Sbjct: 198 PKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKI 257
Query: 1141 LSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQN 1200
+ N + H + N + +++ + +
Sbjct: 258 SENKNDAKVSLLLNNCDAEYSKYCDCKHTTTLVKSVLNGNDNTIKEKREHIDLDDFSKFG 317
Query: 1201 QSQKNYYYHLNLSQNYYYHQN 1221
+ + + + + ++
Sbjct: 318 CDKNSVDTNTKVWECKKPYKL 338
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.134 0.394
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,973,288
Number of extensions: 1220793
Number of successful extensions: 5433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3831
Number of HSP's successfully gapped: 508
Length of query: 1235
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1130
Effective length of database: 3,770,088
Effective search space: 4260199440
Effective search space used: 4260199440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.4 bits)