BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1431
(1043 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QFE|A Chain A, Distal C2-Like Domain Of Human Calpain-7
Length = 148
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 84/134 (62%), Gaps = 4/134 (2%)
Query: 910 NPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSL 969
+PY + I+G+W G +AGGC N+ T+ NNP YQ ++ LL+ L+GP+QYS+
Sbjct: 19 SPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEK----TGPLLIELRGPRQYSV 74
Query: 970 GVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFL 1029
G ++ V + F K SG YR GF +E++N+PSG + I+PSTF P+QEGPFFL
Sbjct: 75 GFEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFL 134
Query: 1030 ELKSSCSITISRIR 1043
+ S I I++++
Sbjct: 135 DFNSIIPIKITQLQ 148
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 131/318 (41%), Gaps = 40/318 (12%)
Query: 336 EKFQYAVPFTDKEGP-----LILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQT 390
E Q F D + P L S + + FV W RP E P+ + G I Q
Sbjct: 28 ECLQRGTLFEDADFPASNSSLFYSERPQIPFV-WKRPGEIVKNPEFILGG-ATRTDICQG 85
Query: 391 IVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKV 450
+ DC +A++A L ++ + + P++++ P Y + H + V
Sbjct: 86 ELGDCWLLAAIASLTLNQKALAR------VIPQDQSFGPGYAGIFHFQFWQHSEWL--DV 137
Query: 451 IIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGA 510
+IDD+LP R ++L+ +S + NE W ++LEKAY K+ G Y+ S + A+ G
Sbjct: 138 VIDDRLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGV 196
Query: 511 ARAIRPNDA---------RILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSR 561
A + +A + L + S+ F S A + + K
Sbjct: 197 AETFQTKEAPENFYEILEKALKRGSLL-GCFIDTRSAAE-----SEARTPFGLIKGHAYS 250
Query: 562 VDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELD---RLHWTPELKRALNFDPNSASM 618
V + Q + L++++NPW V W G++S+ R E KR + +
Sbjct: 251 VTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCH------TA 304
Query: 619 FDNGIFWIDYESILRFYD 636
D+G FW+ ++ +D
Sbjct: 305 LDDGEFWMAFKDFKAHFD 322
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 49 EKFQYAVPFTDKEGP-----LILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQT 103
E Q F D + P L S + + FV W RP E P+ + G I Q
Sbjct: 28 ECLQRGTLFEDADFPASNSSLFYSERPQIPFV-WKRPGEIVKNPEFILGG-ATRTDICQG 85
Query: 104 IVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKV 163
+ DC +A++A L ++ + + P++++ P Y + H + V
Sbjct: 86 ELGDCWLLAAIASLTLNQKALAR------VIPQDQSFGPGYAGIFHFQFWQHSEWL--DV 137
Query: 164 IIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYD 205
+IDD+LP R ++L+ +S + NE W ++LEKAY K+ G Y+
Sbjct: 138 VIDDRLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYE 178
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 131/318 (41%), Gaps = 40/318 (12%)
Query: 336 EKFQYAVPFTDKEGP-----LILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQT 390
E Q F D + P L S + + FV W RP E P+ + G I Q
Sbjct: 27 ECLQRGTLFEDADFPASNSSLFYSERPQIPFV-WKRPGEIVKNPEFILGG-ATRTDICQG 84
Query: 391 IVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKV 450
+ DC +A++A L ++ + + P++++ P Y + H + V
Sbjct: 85 ELGDCWLLAAIASLTLNQKALAR------VIPQDQSFGPGYAGIFHFQFWQHSEWL--DV 136
Query: 451 IIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGA 510
+IDD+LP R ++L+ +S + NE W ++LEKAY K+ G Y+ S + A+ G
Sbjct: 137 VIDDRLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGV 195
Query: 511 ARAIRPNDA---------RILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSR 561
A + +A + L + S+ F S A + + K
Sbjct: 196 AETFQTKEAPENFYEILEKALKRGSLL-GCFIDTRSAAE-----SEARTPFGLIKGHAYS 249
Query: 562 VDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELD---RLHWTPELKRALNFDPNSASM 618
V + Q + L++++NPW V W G++S+ R E KR + +
Sbjct: 250 VTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCH------TA 303
Query: 619 FDNGIFWIDYESILRFYD 636
D+G FW+ ++ +D
Sbjct: 304 LDDGEFWMAFKDFKAHFD 321
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 49 EKFQYAVPFTDKEGP-----LILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQT 103
E Q F D + P L S + + FV W RP E P+ + G I Q
Sbjct: 27 ECLQRGTLFEDADFPASNSSLFYSERPQIPFV-WKRPGEIVKNPEFILGG-ATRTDICQG 84
Query: 104 IVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKV 163
+ DC +A++A L ++ + + P++++ P Y + H + V
Sbjct: 85 ELGDCWLLAAIASLTLNQKALAR------VIPQDQSFGPGYAGIFHFQFWQHSEWL--DV 136
Query: 164 IIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYD 205
+IDD+LP R ++L+ +S + NE W ++LEKAY K+ G Y+
Sbjct: 137 VIDDRLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYE 177
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 127/320 (39%), Gaps = 56/320 (17%)
Query: 341 AVPFTDKEGPLILSPKQKRDF---------VAWVRPSEFCSEPKMVAGEFVDYFSIKQTI 391
V F D E P S +D + W RP+E P+ + G I Q
Sbjct: 23 GVLFKDPEFPAXPSALGYKDLGPGSPQTQGIIWKRPTELXPSPQFIVGG-ATRTDIXQGG 81
Query: 392 VSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVI 451
+ DC +A++A L E + + PR+++ + Y G + + G +V+
Sbjct: 82 LGDCWLLAAIASLTLNEELLYR------VVPRDQDFQENYA--GIFHFQFWQYGEWVEVV 133
Query: 452 IDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAA 511
IDD+LP + QLL +S+ NE W ++LEKAY K+ G Y+ ST+ G +
Sbjct: 134 IDDRLP-TKNGQLLFLHSEQGNEFWSALLEKAYAKLNGXYEALAGGSTVEGFEDFTGGIS 192
Query: 512 -------------RAIRPN-DARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKR 557
+ IR A L S+ ++++ + A+ ++ K
Sbjct: 193 EFYDLKKPPANLYQIIRKALXAGSLLGCSI--DVYSAAEAEAI---------TSQKLVKS 241
Query: 558 ERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSAS 617
V ++ +L++L+NPW V W G +S+ D W + DP
Sbjct: 242 HAYSVTGVEEVNFQGHPEKLIRLRNPWGEVEWSGAWSD-DAPEWN-------HIDPRRKE 293
Query: 618 MFD----NGIFWIDYESILR 633
D +G FW+ +R
Sbjct: 294 ELDKKVEDGEFWMSLSDFVR 313
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 54 AVPFTDKEGPLILSPKQKRDF---------VAWVRPSEFCSEPKMVAGEFVDYFSIKQTI 104
V F D E P S +D + W RP+E P+ + G I Q
Sbjct: 23 GVLFKDPEFPAXPSALGYKDLGPGSPQTQGIIWKRPTELXPSPQFIVGG-ATRTDIXQGG 81
Query: 105 VSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVI 164
+ DC +A++A L E + + PR+++ + Y G + + G +V+
Sbjct: 82 LGDCWLLAAIASLTLNEELLYR------VVPRDQDFQENYA--GIFHFQFWQYGEWVEVV 133
Query: 165 IDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYD 205
IDD+LP + QLL +S+ NE W ++LEKAY K+ G Y+
Sbjct: 134 IDDRLP-TKNGQLLFLHSEQGNEFWSALLEKAYAKLNGXYE 173
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 114/288 (39%), Gaps = 43/288 (14%)
Query: 364 WVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPR 423
W RP+E C++P+ + G I Q + DC +A++A L E + + + P
Sbjct: 74 WKRPTEICADPQFIIGG-ATRTDICQGALGDCWLLAAIASLTLNEE------ILARVVPL 126
Query: 424 NRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKA 483
N++ + Y G + + G +V++DD+LP + +LL +S +E W ++LEKA
Sbjct: 127 NQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLEKA 183
Query: 484 YMKVMGGYDFPGSNSTLHALNGLDTGAARAIR-----PNDARILTQTSVFENLF------ 532
Y K+ G Y+ +T G A PN +I+ + +L
Sbjct: 184 YAKINGCYEALSGGATTEGFEDFTGGIAEWYELKKPPPNLFKIIQKALQKGSLLGCSIDI 243
Query: 533 -TRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRG 591
+ S A+ + K E ++Q +L++++NPW V W G
Sbjct: 244 TSAADSEAITFQKLVKGHAYSVTGAEEVESNGSLQ---------KLIRIRNPWGEVEWTG 294
Query: 592 NYSELDRLHWTPELKRALNFDPNSASMF----DNGIFWIDYESILRFY 635
W DP ++G FW+ + LR Y
Sbjct: 295 --------RWNDNCPSWNTIDPEERERLTRRHEDGEFWMSFSDFLRHY 334
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 77 WVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPR 136
W RP+E C++P+ + G I Q + DC +A++A L E + + + P
Sbjct: 74 WKRPTEICADPQFIIGG-ATRTDICQGALGDCWLLAAIASLTLNEE------ILARVVPL 126
Query: 137 NRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKA 196
N++ + Y G + + G +V++DD+LP + +LL +S +E W ++LEKA
Sbjct: 127 NQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLEKA 183
Query: 197 YMKVMGGYD 205
Y K+ G Y+
Sbjct: 184 YAKINGCYE 192
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 917 EISGEWK-GLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN------TLLVFL-------- 961
++ G W+ G TAGGC NYP T+ NP+Y + L+ + T LV L
Sbjct: 359 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDEEDGESGCTFLVGLIQKHRRRQ 418
Query: 962 --KGPKQYSLGVKISCV--RLDDET----ATAPFKTKDSGAYRSGFVAV-EMDN---LPS 1009
G +++G I V L +T + F T + F+ + E+ N LP
Sbjct: 419 RKMGEDMHTIGFGIYEVPEELSGQTNIHLSKNFFLTNRARERSDTFINLREVLNRFKLPP 478
Query: 1010 GTYEIMPSTFSPQQEGPFFLELKS 1033
G Y ++PSTF P ++G F + + S
Sbjct: 479 GEYILVPSTFEPNKDGDFCIRVFS 502
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 41/289 (14%)
Query: 362 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 421
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 55 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 107
Query: 422 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 481
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 108 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLPT-KDGELLFVHSAEGSEFWSALLE 164
Query: 482 KAYMKVMGGYDFPGSNSTLHALNGLDTGAA-----RAIRPNDARILTQT-------SVFE 529
KAY K+ G Y+ +T G A R PN +I+ +
Sbjct: 165 KAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSI 224
Query: 530 NLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRW 589
++ + S A+ + K E ++Q +L++++NPW V W
Sbjct: 225 DITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQ---------KLIRIRNPWGQVEW 275
Query: 590 RGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYESILRFY 635
G +++ + W PE++ N ++G FW+ + LR Y
Sbjct: 276 TGKWND-NCPSWNTVDPEVR------ANLTERQEDGEFWMSFSDFLRHY 317
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 75 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 134
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 55 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 107
Query: 135 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 194
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 108 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLPT-KDGELLFVHSAEGSEFWSALLE 164
Query: 195 KAYMKVMGGYD 205
KAY K+ G Y+
Sbjct: 165 KAYAKINGCYE 175
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 41/289 (14%)
Query: 362 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 421
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 73 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 125
Query: 422 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 481
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 126 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLE 182
Query: 482 KAYMKVMGGYDFPGSNSTLHALNGLDTGAA-----RAIRPNDARILTQT-------SVFE 529
KAY K+ G Y+ +T G A R PN +I+ +
Sbjct: 183 KAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSI 242
Query: 530 NLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRW 589
++ + S A+ + K E ++Q +L++++NPW V W
Sbjct: 243 DITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQ---------KLIRIRNPWGQVEW 293
Query: 590 RGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYESILRFY 635
G +++ + W PE++ N ++G FW+ + LR Y
Sbjct: 294 TGKWND-NCPSWNTVDPEVR------ANLTERQEDGEFWMSFSDFLRHY 335
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 75 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 134
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 73 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 125
Query: 135 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 194
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 126 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLE 182
Query: 195 KAYMKVMGGYD 205
KAY K+ G Y+
Sbjct: 183 KAYAKINGCYE 193
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 917 EISGEWK-GLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN------TLLVFL-------- 961
++ G W+ G TAGGC NYP T+ NP+Y + L+ D T LV L
Sbjct: 360 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQ 419
Query: 962 --KGPKQYSLGVKISCV--RLDDET----ATAPFKTKDSGAYRSGFVAV-EMDN---LPS 1009
G +++G I V L +T + F T + F+ + E+ N LP
Sbjct: 420 RKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPP 479
Query: 1010 GTYEIMPSTFSPQQEGPFFLELKS 1033
G Y ++PSTF P + G F + + S
Sbjct: 480 GEYVLVPSTFEPHKNGDFCIRVFS 503
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 41/289 (14%)
Query: 362 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 421
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 73 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 125
Query: 422 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 481
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 126 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLE 182
Query: 482 KAYMKVMGGYDFPGSNSTLHALNGLDTGAA-----RAIRPNDARILTQT-------SVFE 529
KAY K+ G Y+ +T G A R PN +I+ +
Sbjct: 183 KAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSI 242
Query: 530 NLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRW 589
++ + S A+ + K E ++Q +L++++NPW V W
Sbjct: 243 DITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQ---------KLIRIRNPWGQVEW 293
Query: 590 RGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYESILRFY 635
G +++ + W PE++ N ++G FW+ + LR Y
Sbjct: 294 TGKWND-NCPSWNTVDPEVR------ANLTERQEDGEFWMSFSDFLRHY 335
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 75 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 134
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 73 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 125
Query: 135 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 194
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 126 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLE 182
Query: 195 KAYMKVMGGYD 205
KAY K+ G Y+
Sbjct: 183 KAYAKINGCYE 193
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 917 EISGEWK-GLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN------TLLVFL-------- 961
++ G W+ G TAGGC NYP T+ NP+Y + L+ D T LV L
Sbjct: 360 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQ 419
Query: 962 --KGPKQYSLGVKISCV--RLDDET----ATAPFKTKDSGAYRSGFVAV-EMDN---LPS 1009
G +++G I V L +T + F T + F+ + E+ N LP
Sbjct: 420 RKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPP 479
Query: 1010 GTYEIMPSTFSPQQEGPFFLELKS 1033
G Y ++PSTF P + G F + + S
Sbjct: 480 GEYVLVPSTFEPHKNGDFCIRVFS 503
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 122/289 (42%), Gaps = 41/289 (14%)
Query: 362 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 421
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 73 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 125
Query: 422 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 481
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 126 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLE 182
Query: 482 KAYMKVMGGYDFPGSNSTLHALNGLDTGAA-----RAIRPNDARILTQTSVFENLF---- 532
KAY K+ G Y+ +T G A R PN +I+ + +L
Sbjct: 183 KAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSI 242
Query: 533 ---TRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRW 589
+ S A+ + K E ++Q +L++++NPW V W
Sbjct: 243 DITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQ---------KLIRIRNPWGQVEW 293
Query: 590 RGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYESILRFY 635
G +++ + W PE++ N ++G FW+ + LR Y
Sbjct: 294 TGKWND-NCPSWNTVDPEVR------ANLTERQEDGEFWMSFSDFLRHY 335
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 75 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 134
+ W RP+E C++P+ + G I Q + D +A++A L E + + +
Sbjct: 73 IEWKRPTEICADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEE------ILARVV 125
Query: 135 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 194
P +++ + Y G + + G +V++DD+LP + +LL +S +E W ++LE
Sbjct: 126 PLDQSFQENYA--GIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLE 182
Query: 195 KAYMKVMGGYD 205
KAY K+ G Y+
Sbjct: 183 KAYAKINGCYE 193
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 917 EISGEWK-GLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN------TLLVFL-------- 961
++ G W+ G TAGGC NYP T+ NP+Y + L+ D T LV L
Sbjct: 360 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQ 419
Query: 962 --KGPKQYSLGVKISCV--RLDDET----ATAPFKTKDSGAYRSGFVAV-EMDN---LPS 1009
G +++G I V L +T + F T + F+ + E+ N LP
Sbjct: 420 RKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPP 479
Query: 1010 GTYEIMPSTFSPQQEGPFFLELKS 1033
G Y ++PSTF P + G F + + S
Sbjct: 480 GEYVLVPSTFEPHKNGDFCIRVFS 503
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 353 LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRF 411
L P + + + W RP+E S P+ + + I Q + DC +A++A L +
Sbjct: 41 LGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDCWLLAAIASLTLNDTLL 99
Query: 412 GKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQN 471
+ + P ++ + Y G + +L G V++DD LP+ + +L+ +S
Sbjct: 100 HR------VVPHGQSFQNGYA--GIFHFQLWQFGEWVDVVVDDLLPI-KDGKLVFVHSAE 150
Query: 472 KNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENL 531
NE W ++LEKAY KV G Y+ ST A G A + +++ +
Sbjct: 151 GNEFWSALLEKAYAKVNGSYEALSGGSTSEAFEDFTGGVTEWYELRKA----PSDLYQII 206
Query: 532 FTRLHSRAMFWLPWCKREI-------CLRMKKRERSRVDTMQSS--VSW-SQGLRLLQLK 581
L ++ C +I + KK + ++ + V++ Q + L++++
Sbjct: 207 LKALERGSLL---GCSIDISSVLDMEAITFKKLVKGHAYSVTGAKQVNYRGQVVSLIRMR 263
Query: 582 NPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMF----DNGIFWIDYESILR 633
NPW V W G +S+ W N DP ++G FW+ + +R
Sbjct: 264 NPWGEVEWTGAWSD-SSSEWN-------NVDPYERDQLRVKMEDGEFWMSFRDFMR 311
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 116/290 (40%), Gaps = 36/290 (12%)
Query: 66 LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRF 124
L P + + + W RP+E S P+ + + I Q + DC +A++A L +
Sbjct: 41 LGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDCWLLAAIASLTLNDTLL 99
Query: 125 GKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQN 184
+ + P ++ + Y G + +L G V++DD LP+ + +L+ +S
Sbjct: 100 HR------VVPHGQSFQNGYA--GIFHFQLWQFGEWVDVVVDDLLPI-KDGKLVFVHSAE 150
Query: 185 KNELWVSILEKAYMKVMGGYD-FPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNEPKN 243
NE W ++LEKAY KV G Y+ G ++ FT W R P +
Sbjct: 151 GNEFWSALLEKAYAKVNGSYEALSGGSTSEAFEDFT---------GGVTEWYELRKAPSD 201
Query: 244 -----EQVKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQH 298
+ R LL C +S LD + K V+ + S+ K +RG
Sbjct: 202 LYQIILKALERGSLLG--CSIDISSVLDMEAITFKKL-VKGHAYSVTGAKQVNYRGQVVS 258
Query: 299 LKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKE 348
L + R+ + E E + S + NVD E+ Q V D E
Sbjct: 259 L-IRMRNPWGEVEWTGAWSDSS------SEWNNVDPYERDQLRVKMEDGE 301
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 122/296 (41%), Gaps = 40/296 (13%)
Query: 353 LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRF 411
L P + + + W RP+E S P+ + + I Q + DC +A++A L +
Sbjct: 64 LGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDCWLLAAIASLTLNDTLL 122
Query: 412 GKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQN 471
+ + P ++ + Y G + +L G V++DD LP+ + +L+ +S
Sbjct: 123 HR------VVPHGQSFQNGYA--GIFHFQLWQFGEWVDVVVDDLLPI-KDGKLVFVHSAE 173
Query: 472 KNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENL 531
NE W ++LEKAY KV G Y+ ST G A + +++ +
Sbjct: 174 GNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYELRKA----PSDLYQII 229
Query: 532 FTRLHSRAMFWLPWCKREI-------CLRMKKRERSRVDTMQSS--VSW-SQGLRLLQLK 581
L ++ C +I + KK + ++ + V++ Q + L++++
Sbjct: 230 LKALERGSLL---GCSIDISSVLDMEAITFKKLVKGHAYSVTGAKQVNYRGQVVSLIRMR 286
Query: 582 NPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMF----DNGIFWIDYESILR 633
NPW V W G +S+ W N DP ++G FW+ + +R
Sbjct: 287 NPWGEVEWTGAWSD-SSSEWN-------NVDPYERDQLRVKMEDGEFWMSFRDFMR 334
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 40/292 (13%)
Query: 66 LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRF 124
L P + + + W RP+E S P+ + + I Q + DC +A++A L +
Sbjct: 64 LGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDCWLLAAIASLTLNDTLL 122
Query: 125 GKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQN 184
+ + P ++ + Y G + +L G V++DD LP+ + +L+ +S
Sbjct: 123 HR------VVPHGQSFQNGYA--GIFHFQLWQFGEWVDVVVDDLLPI-KDGKLVFVHSAE 173
Query: 185 KNELWVSILEKAYMKVMGGYDF--PGSNSPGIRRSFTTVDCLRIEFNPRLT-WVLERNEP 241
NE W ++LEKAY KV G Y+ GS S G +F +T W R P
Sbjct: 174 GNEFWSALLEKAYAKVNGSYEALSGGSTSEGFE-----------DFTGGVTEWYELRKAP 222
Query: 242 KN-----EQVKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSS 296
+ + R LL C +S LD + K V+ + S+ K +RG
Sbjct: 223 SDLYQIILKALERGSLLG--CSIDISSVLDMEAITFKKL-VKGHAYSVTGAKQVNYRGQV 279
Query: 297 QHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKE 348
L + R+ + E E + S + NVD E+ Q V D E
Sbjct: 280 VSL-IRMRNPWGEVEWTGAWSDSSSE------WNNVDPYERDQLRVKMEDGE 324
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 125/320 (39%), Gaps = 44/320 (13%)
Query: 335 AEKFQYAVPFTDKEGPLI--------LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYF 385
A Q V F D P + L P + + + W RP+E S P+ + +
Sbjct: 22 ARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRT 80
Query: 386 SIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNG 445
I Q + DC +A++A L E + + P ++ + Y G + +L G
Sbjct: 81 DICQGALGDCWLLAAIASLTLNET------ILHRVVPYGQSFQEGYA--GIFHFQLWQFG 132
Query: 446 ITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNG 505
V++DD LP + +L+ +S NE W ++LEKAY KV G Y+ T A
Sbjct: 133 EWVDVVVDDLLP-TKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFED 191
Query: 506 LDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREI----CLRMKKRER-- 559
G A + +++ + L ++ +I + K R
Sbjct: 192 FTGGVTEWYDLQKA----PSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGH 247
Query: 560 --SRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSAS 617
S D Q + Q + L++++NPW V W+G +S+ + W DP
Sbjct: 248 AYSVTDAKQVTYQ-GQRVNLIRMRNPWGEVEWKGPWSD-NSYEWN-------KVDPYERE 298
Query: 618 MF----DNGIFWIDYESILR 633
++G FW+ + +R
Sbjct: 299 QLRVKMEDGEFWMSFRDFIR 318
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 48 AEKFQYAVPFTDKEGPLI--------LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYF 98
A Q V F D P + L P + + + W RP+E S P+ + +
Sbjct: 22 ARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRT 80
Query: 99 SIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNG 158
I Q + DC +A++A L E + + P ++ + Y G + +L G
Sbjct: 81 DICQGALGDCWLLAAIASLTLNET------ILHRVVPYGQSFQEGYA--GIFHFQLWQFG 132
Query: 159 ITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYD 205
V++DD LP + +L+ +S NE W ++LEKAY KV G Y+
Sbjct: 133 EWVDVVVDDLLP-TKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYE 178
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 124/320 (38%), Gaps = 44/320 (13%)
Query: 335 AEKFQYAVPFTDKEGPLI--------LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYF 385
A Q V F D P + L P + + + W RP+E S P+ + +
Sbjct: 22 ARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRT 80
Query: 386 SIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNG 445
I Q + D +A++A L E + + P ++ + Y G + +L G
Sbjct: 81 DICQGALGDSWLLAAIASLTLNET------ILHRVVPYGQSFQEGYA--GIFHFQLWQFG 132
Query: 446 ITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNG 505
V++DD LP + +L+ +S NE W ++LEKAY KV G Y+ T A
Sbjct: 133 EWVDVVVDDLLP-TKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFED 191
Query: 506 LDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREI----CLRMKKRER-- 559
G A + +++ + L ++ +I + K R
Sbjct: 192 FTGGVTEWYDLQKA----PSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGH 247
Query: 560 --SRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSAS 617
S D Q + Q + L++++NPW V W+G +S+ + W DP
Sbjct: 248 AYSVTDAKQVTYQ-GQRVNLIRMRNPWGEVEWKGPWSD-NSYEWN-------KVDPYERE 298
Query: 618 MF----DNGIFWIDYESILR 633
++G FW+ + +R
Sbjct: 299 QLRVKMEDGEFWMSFRDFIR 318
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 48 AEKFQYAVPFTDKEGPLI--------LSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYF 98
A Q V F D P + L P + + + W RP+E S P+ + +
Sbjct: 22 ARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRT 80
Query: 99 SIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNG 158
I Q + D +A++A L E + + P ++ + Y G + +L G
Sbjct: 81 DICQGALGDSWLLAAIASLTLNET------ILHRVVPYGQSFQEGYA--GIFHFQLWQFG 132
Query: 159 ITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYD 205
V++DD LP + +L+ +S NE W ++LEKAY KV G Y+
Sbjct: 133 EWVDVVVDDLLP-TKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYE 178
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 36/304 (11%)
Query: 343 PFTDKEGPLILSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASL 401
P + G L P + + + W RP+E S P+ + + I Q + D +A++
Sbjct: 53 PVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDSWLLAAI 111
Query: 402 AVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARF 461
A L E + + P ++ + Y G + +L G V++DD LP +
Sbjct: 112 ASLTLNE------TILHRVVPYGQSFQEGYA--GIFHFQLWQFGEWVDVVVDDLLP-TKD 162
Query: 462 NQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARI 521
+L+ +S NE W ++LEKAY KV G Y+ T A G A
Sbjct: 163 GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKA-- 220
Query: 522 LTQTSVFENLFTRLHSRAMFWLPWCKREI----CLRMKKRER----SRVDTMQSSVSWSQ 573
+ +++ + L ++ +I + K R S D Q + Q
Sbjct: 221 --PSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQ-GQ 277
Query: 574 GLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMF----DNGIFWIDYE 629
+ L++++NPW V W+G +S+ + W DP ++G FW+ +
Sbjct: 278 RVNLIRMRNPWGEVEWKGPWSD-NSYEWN-------KVDPYEREQLRVKMEDGEFWMSFR 329
Query: 630 SILR 633
+R
Sbjct: 330 DFIR 333
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 28/142 (19%)
Query: 920 GEWK-GLTAGGCPNYPATYPNNPRYQVTL---------DSRQSMDNTLLVFLKGPKQYSL 969
G W+ G TAGGC NYPAT+ NP++++ L DSR+S + LL ++ ++
Sbjct: 363 GTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRER 422
Query: 970 G-------VKISCVRLDDETATAP-------FKTKDSGAYRSGFVAV-EMDN---LPSGT 1011
+ + ++ E A P F S A F+ + E+ N LP G
Sbjct: 423 RFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGE 482
Query: 1012 YEIMPSTFSPQQEGPFFLELKS 1033
Y ++PSTF P +EG F L S
Sbjct: 483 YIVVPSTFEPNKEGDFLLRFFS 504
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 56 PFTDKEGPLILSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASL 114
P + G L P + + + W RP+E S P+ + + I Q + D +A++
Sbjct: 53 PVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDSWLLAAI 111
Query: 115 AVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARF 174
A L E + + P ++ + Y G + +L G V++DD LP +
Sbjct: 112 ASLTLNE------TILHRVVPYGQSFQEGYA--GIFHFQLWQFGEWVDVVVDDLLP-TKD 162
Query: 175 NQLLCSYSQNKNELWVSILEKAYMKVMGGYD 205
+L+ +S NE W ++LEKAY KV G Y+
Sbjct: 163 GKLVFVHSAQGNEFWSALLEKAYAKVNGSYE 193
>pdb|3IYP|A Chain A, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
pdb|2X5I|A Chain A, Crystal Structure Echovirus 7
Length = 292
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 494 PGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLR 553
P +++++ AL ++TG + P+D QT +N +R S +L R C+
Sbjct: 22 PSNSTSIPALTAVETGHTSQVEPSDT---MQTRHVKNYHSRSESTVENFL---SRSACVY 75
Query: 554 MKKRERSRVDTMQSSVSWS-QGLRLLQLK 581
+++ D + +SW+ R++QL+
Sbjct: 76 IEEYYTKDQDNVNRYMSWTINARRMVQLR 104
>pdb|1M11|1 Chain 1, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 278
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 494 PGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLR 553
P +++++ AL ++TG + P+D QT +N +R S +L R C+
Sbjct: 22 PSNSTSIPALTAVETGHTSQVEPSDT---MQTRHVKNYHSRSESTVENFL---SRSACVY 75
Query: 554 MKKRERSRVDTMQSSVSWS-QGLRLLQLK 581
+++ D + +SW+ R++QL+
Sbjct: 76 IEEYYTKDQDNVNRYMSWTINARRMVQLR 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,690,537
Number of Sequences: 62578
Number of extensions: 1350570
Number of successful extensions: 2895
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2813
Number of HSP's gapped (non-prelim): 51
length of query: 1043
length of database: 14,973,337
effective HSP length: 109
effective length of query: 934
effective length of database: 8,152,335
effective search space: 7614280890
effective search space used: 7614280890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)