Query psy1431
Match_columns 1043
No_of_seqs 604 out of 2255
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:36:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bow_A Calpain-2 catalytic sub 100.0 4.3E-73 1.5E-77 703.8 28.9 434 335-815 37-515 (714)
2 1qxp_A MU-like calpain; M-calp 100.0 3.3E-72 1.1E-76 716.1 31.4 440 335-818 37-519 (900)
3 1ziv_A Calpain 9; cysteine pro 100.0 1.7E-61 5.8E-66 545.1 16.9 286 335-648 26-334 (339)
4 2r9f_A Calpain-1 catalytic sub 100.0 2.4E-61 8.2E-66 543.9 17.3 284 335-645 22-330 (339)
5 2nqa_A Calpain 8; calpain, cal 100.0 6.2E-61 2.1E-65 538.8 18.3 280 335-642 17-322 (326)
6 2nqa_A Calpain 8; calpain, cal 100.0 3.6E-39 1.2E-43 362.1 10.9 179 41-229 6-198 (326)
7 1ziv_A Calpain 9; cysteine pro 100.0 1.3E-38 4.3E-43 358.9 12.1 172 48-229 26-202 (339)
8 2r9f_A Calpain-1 catalytic sub 100.0 8.8E-39 3E-43 360.1 9.2 179 41-229 11-203 (339)
9 3bow_A Calpain-2 catalytic sub 100.0 3.6E-35 1.2E-39 364.1 9.5 179 41-229 26-218 (714)
10 1qxp_A MU-like calpain; M-calp 100.0 3.6E-34 1.2E-38 365.5 13.2 180 40-229 25-218 (900)
11 2qfe_A Calpain-7; C2-like doma 100.0 5.3E-31 1.8E-35 261.2 15.1 137 903-1043 12-148 (148)
12 2qfe_A Calpain-7; C2-like doma 99.7 1.6E-16 5.6E-21 157.3 13.7 128 646-812 20-147 (148)
13 2cpt_A SKD1 protein, vacuolar 89.2 0.33 1.1E-05 45.4 4.6 40 253-292 14-53 (117)
14 2v6x_A Vacuolar protein sortin 88.8 0.43 1.5E-05 41.9 4.7 39 253-291 9-47 (85)
15 3sg6_A Gcamp2, myosin light ch 88.4 0.11 3.7E-06 60.3 0.7 47 987-1039 241-287 (450)
16 4a5x_A MITD1, MIT domain-conta 88.1 0.53 1.8E-05 41.5 4.8 39 254-292 13-51 (86)
17 2w2u_A Hypothetical P60 katani 88.1 0.63 2.2E-05 40.7 5.3 45 248-292 10-54 (83)
18 1wfd_A Hypothetical protein 15 85.0 0.91 3.1E-05 40.6 4.7 40 253-292 11-50 (93)
19 2v6y_A AAA family ATPase, P60 84.5 1 3.5E-05 39.4 4.7 40 253-292 7-46 (83)
20 2dl1_A Spartin; SPG20, MIT, st 81.9 1.4 4.7E-05 40.8 4.6 40 253-292 18-57 (116)
21 3eab_A Spastin; spastin, MIT, 75.0 2 6.9E-05 37.8 3.3 39 253-291 12-53 (89)
22 1nqj_A Class 1 collagenase; be 67.1 11 0.00036 35.3 6.6 77 942-1032 42-118 (119)
23 2ymb_A MITD1, MIT domain-conta 57.3 2.2 7.5E-05 45.2 0.0 40 253-292 19-58 (257)
24 3sg6_A Gcamp2, myosin light ch 55.1 4.1 0.00014 47.0 1.8 44 759-811 246-289 (450)
25 3jqw_A COLH protein, collagena 41.2 40 0.0014 31.3 5.9 78 942-1034 40-118 (121)
26 1ug7_A 2610208M17RIK protein; 26.8 90 0.0031 29.0 5.4 56 253-315 15-70 (128)
27 2zan_A Vacuolar protein sortin 24.3 16 0.00055 42.0 0.0 40 253-292 7-46 (444)
28 3ois_A Cysteine protease; alph 24.1 52 0.0018 35.3 4.1 42 562-633 234-276 (291)
29 1nqj_A Class 1 collagenase; be 22.0 3.7E+02 0.013 24.7 8.8 29 768-801 89-117 (119)
No 1
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=100.00 E-value=4.3e-73 Score=703.77 Aligned_cols=434 Identities=20% Similarity=0.370 Sum_probs=342.3
Q ss_pred hhhhcCCCCccCCCCCCC---C-----Cccc-CCCCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHh
Q psy1431 335 AEKFQYAVPFTDKEGPLI---L-----SPKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSA 405 (1043)
Q Consensus 335 ~~~~~~~~~f~D~~~~~~---l-----~~~q-~~~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la 405 (1043)
..|...+.+|+|++||+. | .+.+ +...+.|+||.||+++|+|+. +++++.||+||.+|||||||||+++|
T Consensus 37 ~~c~~~~~~f~D~~Fp~~~~sl~~~~~~~~~~~~~~~~W~Rp~e~~~~p~~~~-~~~~~~di~QG~lgDCw~laala~la 115 (714)
T 3bow_A 37 NECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFII-GGATRTDICQGALGDSWLLAAIASLT 115 (714)
T ss_dssp HHHHHHTCCCCCTTSCSSGGGTCSSTTSTTCGGGTTCEEECHHHHCSSCBSCS-SCSCGGGCBCCSSSCHHHHHHHHHHT
T ss_pred HHHHHcCCeeeCcCCCCCccccccCCCCccccccCCceEEChHHHhcCCeeee-CCCCccccccCCcCChHHHHHHHHHH
Confidence 345667888999999874 2 2222 235689999999999999988 68999999999999999999999999
Q ss_pred cccccccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhh
Q psy1431 406 LYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYM 485 (1043)
Q Consensus 406 ~~~~~~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAya 485 (1043)
.++. +|.+++ |.++++. .++.|+|+||||+||+|+.|+|||+||+.. |+++|++|.+++|+|++|||||||
T Consensus 116 ~~~~-----ll~~v~-~~~~~~~--~~~~G~y~~~~~~~G~w~~VvvDD~lP~~~-g~~~f~~s~~~~e~W~~LlEKAyA 186 (714)
T 3bow_A 116 LNEE-----ILARVV-PLDQSFQ--ENYAGIFHFQFWQYGEWVEVVVDDRLPTKD-GELLFVHSAEGSEFWSALLEKAYA 186 (714)
T ss_dssp TSHH-----HHHHHS-CTTCCSS--SSCSSEEEEEEEETTEEEEEEEESCEEEET-TEESSCBCSSTTBCHHHHHHHHHH
T ss_pred hChH-----HHHhhc-CcCcCcc--cCCceEEEEEEeeCCEEEEEEEeccceeeC-CceEEeecCCCCcchHHHHHHHHH
Confidence 9875 666655 7766544 378999999999999999999999999984 999999999999999999999999
Q ss_pred hhcCCCCCC-CCccc--cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccC--ccc-c
Q psy1431 486 KVMGGYDFP-GSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMK--KRE-R 559 (1043)
Q Consensus 486 Kl~G~Y~~~-g~~~~--L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~--~~~-~ 559 (1043)
|+||||+++ ||++. |++||||+++. +.++. .++.+|+.|.+++++|++| +|++.. ..-. +.. .
T Consensus 187 K~~G~Y~~l~gg~~~~al~~lTG~~~~~-~~l~~------~~~~l~~~l~~~~~~g~l~---~~~~~~-~~~~~~~~~~~ 255 (714)
T 3bow_A 187 KINGCYEALSGGATTEGFEDFTGGIAEW-YELRK------PPPNLFKIIQKALEKGSLL---GCSIDI-TSAADSEAVTY 255 (714)
T ss_dssp HHTSSSGGGSSBCHHHHHHHHHCCEEEE-EETTS------CCTTHHHHHHHHHHTTCEE---EEECCS-TTSCTTCCBCT
T ss_pred HHhCCcccccCCCHHHHHHHhhCCCeEE-EEcCC------CcHHHHHHHHHHHhCCCeE---EEEccc-CCcccccchhc
Confidence 999999974 66655 99999999999 98874 2578999999999999875 665421 0001 111 1
Q ss_pred cc-ccCceeeEeecc-------ceEEEEeeCCCCcCccCCCCCCCCCCCCC---HHHHHHcCCCCCCCCCCCCceEEEec
Q psy1431 560 SR-VDTMQSSVSWSQ-------GLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDY 628 (1043)
Q Consensus 560 ~~-v~~HaYaV~~v~-------~~rll~LrNPWg~~eW~G~wsd~s~~~W~---~~~~~~l~~~~~~~~~~~dG~FWm~~ 628 (1043)
.+ +.+|||+|+++. +.+||+||||||+.||+|+|||.| .+|+ ++++++|+. ..+||+|||+|
T Consensus 256 ~GL~~~HaYsvl~~~~v~~~~~~~~lv~lrNPWg~~ew~G~wsd~s-~~W~~~~~~~~~~l~~------~~~dg~FWm~~ 328 (714)
T 3bow_A 256 QKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNC-PSWNTVDPEVRANLTE------RQEDGEFWMSF 328 (714)
T ss_dssp TSCBTTSCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTC-GGGGGSCHHHHHHHCC------CCCSSEEEEEH
T ss_pred CCCcCCceEEEeeeEEeecCCCceEEEEEECCCCCcccCCCCCCCC-ccccccCHHHHHHhCC------CCCCCeEEEEh
Confidence 12 999999987652 479999999999999999999998 6998 889999986 34899999999
Q ss_pred ccccccccEEEEe-ccCCCCC-------ceeeeeeeeecccccCCCCCcccCcccccccccccceEEEEEeeCCCCCcCC
Q psy1431 629 ESILRFYDVFYMN-WNPGLFS-------HTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFG 700 (1043)
Q Consensus 629 edf~~~F~~~~i~-w~p~~f~-------~~~~~h~~~~W~~~~~~~gg~~~~~~~~~~~~~~NPQf~l~~~~~~~~~~~~ 700 (1043)
+||+++|+.|+|| +.|+.+. +...+++. |.++..+ |||.+...++ +.||||.|++..++.
T Consensus 329 ~df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~--W~~g~ta-GG~~~~~~tf----~~NPqf~l~v~~~~~----- 396 (714)
T 3bow_A 329 SDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGN--WRRGSTA-GGCRNYPNTF----WMNPQYLIKLEEEDE----- 396 (714)
T ss_dssp HHHHHHCCEEEEEESSSSCTTCSSCCEEEEEEEEEE--ECTTTTC-CCCTTCHHHH----TTSCCEEEEECGGGC-----
T ss_pred HHHHhhCCeEEEEEecccccccccCcceEEEEEece--eccCCCC-CCCCCccccc----cCCceEEEEEccCCc-----
Confidence 9999999999986 6777553 12345666 9987755 8998765565 999999999987421
Q ss_pred CCCCCCCCCCCccEEEEEeecc-ccccccccCCceeeEEEEEEeCC----ee-eecC-----CCCCCccccccccCceEE
Q psy1431 701 QWPPSTPAASPKRNFWILLTRH-ITQLEDFKQNREYITVLVYKNEG----KR-VYYP-----YDPPPYLDGVRINSPHYL 769 (1043)
Q Consensus 701 ~~~~~~~~~~~~~~VwilL~rh-~~~~~~~~~~~~~I~l~V~~~~g----~r-v~~~-----~~~~~~~~g~~~ns~~~l 769 (1043)
+ ..+....++|+|.|.|+ .+..+..+.+...|||+||+++. .+ ..++ ........+.|+|+|++.
T Consensus 397 ---~-~~~~~~~~~v~v~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~ 472 (714)
T 3bow_A 397 ---D-DEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVL 472 (714)
T ss_dssp ---B-CGGGCCBEEEEEEEEEESCGGGGGGTCCCCCEEEEEEECCGGGSSCTTCCCCHHHHHHCCCSEECSCEESSSEEE
T ss_pred ---c-ccccCCccEEEEEeeeeccccccccCCCcceEEEEEEEecccccCccccccchhhccccCCccccCCcccccceE
Confidence 0 00112348899988654 44333334556789999999853 11 2222 122234567899999999
Q ss_pred EEEEecCCCCccEEEEeccccCccccceEEEEeecCCccccccCCc
Q psy1431 770 CKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENP 815 (1043)
Q Consensus 770 ~r~~l~p~~~~~YtlVpst~~~~~~~~F~LriyS~~~~~~~~l~~~ 815 (1043)
+++.|+| |.|+|||||++++++++|+|||||+++..+.++++.
T Consensus 473 ~~~~L~p---G~Y~IVPstf~p~~e~~F~Lrv~s~~~~~~~el~~~ 515 (714)
T 3bow_A 473 NRFKLPP---GEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDE 515 (714)
T ss_dssp EEEEECS---EEEEEEEEESSTTCCEEEEEEEEEEESSCC--CCCS
T ss_pred EEEEeCC---CCeEEEEecCCCCCccceeEEEeccCCcceeecccc
Confidence 9999987 899999999999999999999999999998888765
No 2
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=100.00 E-value=3.3e-72 Score=716.10 Aligned_cols=440 Identities=21% Similarity=0.355 Sum_probs=338.7
Q ss_pred hhhhcCCCCccCCCCCCCC--------Cccc-CCCCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHh
Q psy1431 335 AEKFQYAVPFTDKEGPLIL--------SPKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSA 405 (1043)
Q Consensus 335 ~~~~~~~~~f~D~~~~~~l--------~~~q-~~~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la 405 (1043)
.+|...+.+|+|++||+.- .+.+ +...+.|+||+||+++|+|+. +++++.||+||.+||||||||||++|
T Consensus 37 ~~c~~~~~~f~D~~Fp~~~~sl~~~~~~~~~~~~~~~~W~Rp~e~~~~~~~~~-~~~~~~di~Qg~lgdcw~laal~~l~ 115 (900)
T 1qxp_A 37 NECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDSWLLAAIASLT 115 (900)
T ss_dssp HHHHTTTCCCCCSSSCSSSGGGCSSSSSSSCGGGCSCCCBCGGGSSSSCBSCC-CCCSSCCCCCCTTSCSTTHHHHHHHH
T ss_pred HHHHHcCCeeECcCCCCCccccccCCCCcccccccCceEEChHHHccCCeeee-CCCCcccccCCCcccHHHHHHHHHHh
Confidence 3456678889999988742 2222 245689999999999999988 68999999999999999999999999
Q ss_pred cccccccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhh
Q psy1431 406 LYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYM 485 (1043)
Q Consensus 406 ~~~~~~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAya 485 (1043)
.++. +|.+++ |+++.+. .++.|+|+||||++|+|+.|+|||+||+.. |+++|++|.+++|+|++|||||||
T Consensus 116 ~~~~-----~~~~~~-~~~~~~~--~~~~G~y~~~~~~~G~w~~V~vDD~lP~~~-g~~~f~~s~~~~e~W~~LlEKAya 186 (900)
T 1qxp_A 116 LNET-----ILHRVV-PYGQSFQ--EGYAGIFHFQLWQFGEWVDVVVDDLLPTKD-GKLVFVHSAQGNEFWSALLEKAYA 186 (900)
T ss_dssp TCHH-----HHHTTS-CSSCCSS--TTCSSEEEEEEEETTEEEEEEEESCBCEET-TEESSSCCSSSCBCHHHHHHHHHH
T ss_pred hCHH-----HHHhhc-CCCcccc--cccCceEEEEEeECCEEEEEEECCcccccC-CceeeeecCCCCcchHHHHHHHHH
Confidence 9875 565655 7766543 478999999999999999999999999984 999999999999999999999999
Q ss_pred hhcCCCCCC-CCccc--cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccC-cc-ccc
Q psy1431 486 KVMGGYDFP-GSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMK-KR-ERS 560 (1043)
Q Consensus 486 Kl~G~Y~~~-g~~~~--L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~-~~-~~~ 560 (1043)
|+||||+++ ||++. |++||||+++. +.++. .++.+|+.|.+++++|++| +|++....... +. ...
T Consensus 187 K~~G~Y~~l~gg~~~~~l~~lTG~~~~~-~~~~~------~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 256 (900)
T 1qxp_A 187 KVNGSYEALSGGCTSEAFEDFTGGVTEW-YDLQK------APSDLYQIILKALERGSLL---GCSINISDIRDLEAITFK 256 (900)
T ss_dssp HHHSSSGGGSSCCHHHHHHHTTSCBCCE-EEGGG------CCTTHHHHHHHHHTTTCEE---EEECCC---------CCC
T ss_pred HHhCCchhcCCCCHHHHHHHhhCCCeEE-EecCC------ChHHHHHHHHHHHhCCCEE---EEEecCCCccccchhhcC
Confidence 999999974 66665 99999999999 98873 2578999999999999875 66542100000 11 112
Q ss_pred c-ccCceeeEeecc-------ceEEEEeeCCCCcCccCCCCCCCCCCCCC---HHHHHHcCCCCCCCCCCCCceEEEecc
Q psy1431 561 R-VDTMQSSVSWSQ-------GLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYE 629 (1043)
Q Consensus 561 ~-v~~HaYaV~~v~-------~~rll~LrNPWg~~eW~G~wsd~s~~~W~---~~~~~~l~~~~~~~~~~~dG~FWm~~e 629 (1043)
+ +.+|||+|+.+. +.+||+||||||+.||+|+|||.| .+|+ +++++.|+. ..+||+|||+|+
T Consensus 257 gl~~~haY~v~~~~~~~~~~~~~~lv~lrNPwg~~ew~G~wsd~s-~~W~~~~~~~~~~l~~------~~~dg~Fwm~~~ 329 (900)
T 1qxp_A 257 NLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNS-YEWNKVDPYEREQLRV------KMEDGEFWMSFR 329 (900)
T ss_dssp CC---CCCEEEEEEECCCSSSCCEEEEEECTTCCCCCSCSCC-CC-SCSSSSCCTHHHHTTC------CCCSSCCCCBST
T ss_pred CCCCCceEEEeEEEEEecCCCceEEEEEeCCCCCCCcCCCCCCCC-cccccCCHHHHHHhCC------CCCCCeEEeEHH
Confidence 2 999999987642 479999999999999999999998 6998 789999986 358999999999
Q ss_pred cccccccEEEE-eccCCCCCc-------eeeeeeeeecccccCCCCCcccCcccccccccccceEEEEEeeCCCCCcCCC
Q psy1431 630 SILRFYDVFYM-NWNPGLFSH-------TFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQ 701 (1043)
Q Consensus 630 df~~~F~~~~i-~w~p~~f~~-------~~~~h~~~~W~~~~~~~gg~~~~~~~~~~~~~~NPQf~l~~~~~~~~~~~~~ 701 (1043)
||+++|+.|+| +|+|+.+.. ...+++. |.++..+ |||.+...++ +.||||.|++.+++..+
T Consensus 330 df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~--W~~g~ta-GG~~~~~~tf----~~NPqf~l~v~~~~~~~---- 398 (900)
T 1qxp_A 330 DFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGT--WRRGSTA-GGCRNYPATF----WVNPQFKIRLEEVDDAD---- 398 (900)
T ss_dssp TSSSCSEEEEEBCCCC--CCSSCSCCCBCCEEEEE--ECTTTTC-CCCTTCTTTG----GGSCBCEEEECSCCC------
T ss_pred HHHhhCCeEEEEEecchhhccccCCceEEEecccc--ccCCCCC-CCCCCccccc----ccCceEEEEEccCCccc----
Confidence 99999999998 588887641 2246666 9988755 8998876666 99999999998743100
Q ss_pred CCCCCCCCCCccEEEEEeecc-ccccccccCCceeeEEEEEEeCC----eeeecC-----CCCCCccccccccCceEEEE
Q psy1431 702 WPPSTPAASPKRNFWILLTRH-ITQLEDFKQNREYITVLVYKNEG----KRVYYP-----YDPPPYLDGVRINSPHYLCK 771 (1043)
Q Consensus 702 ~~~~~~~~~~~~~VwilL~rh-~~~~~~~~~~~~~I~l~V~~~~g----~rv~~~-----~~~~~~~~g~~~ns~~~l~r 771 (1043)
+ ..+....++|||.|+|+ .+..+..+.....|||+||+++. .++.++ .....+..+.|+|+|++.++
T Consensus 399 --~-~~~~~~~~~v~i~L~Q~~~r~~~~~~~~~~~igf~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Rev~~~ 475 (900)
T 1qxp_A 399 --D-YDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNR 475 (900)
T ss_dssp ------CCSSCCEEEEEEEEC----------CCCCEEEEEEECCSCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEE
T ss_pred --c-ccccCCCcEEEEEeeecccccccccCCCceeeEEEEEEeccccccccccCChhhhccCCCccccCCccccCceeEe
Confidence 0 01122348899999665 33333333456789999999853 233332 23344567899999999999
Q ss_pred EEecCCCCccEEEEeccccCccccceEEEEeecCCccccccCCcccc
Q psy1431 772 IILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQF 818 (1043)
Q Consensus 772 ~~l~p~~~~~YtlVpst~~~~~~~~F~LriyS~~~~~~~~l~~~~~~ 818 (1043)
++|+| |.|+|||+|++++++++|+||+||.++..+.++++....
T Consensus 476 ~~L~p---G~Y~IVPst~~p~~e~~F~Lrv~s~~~~~~~eld~~~~~ 519 (900)
T 1qxp_A 476 IRLPP---GEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQIQA 519 (900)
T ss_dssp EECCS---EEEEEEEEESSSSCCEEEEEEEEESSCEEECCBCCCCEE
T ss_pred EEeCC---CCEEEEeecCCCCCCCCceEEEeccCCcceeecCccccc
Confidence 99987 899999999999999999999999999999888776433
No 3
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=100.00 E-value=1.7e-61 Score=545.07 Aligned_cols=286 Identities=24% Similarity=0.459 Sum_probs=233.1
Q ss_pred hhhhcCCCCccCCCCCCCCCc---c-cCCCCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHhccccc
Q psy1431 335 AEKFQYAVPFTDKEGPLILSP---K-QKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERR 410 (1043)
Q Consensus 335 ~~~~~~~~~f~D~~~~~~l~~---~-q~~~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la~~~~~ 410 (1043)
..|...+.+|+|++||+.-+. . .....+.|+||.||+++|+|+. +++++.||+||.+|||||||||++||+++.
T Consensus 26 ~~c~~~~~~F~D~~Fp~~~~Sl~~~~~~~~~~~W~Rp~ei~~~p~~~~-~~~~~~dI~QG~lGDCwllaAla~la~~p~- 103 (339)
T 1ziv_A 26 QECLQRGTLFEDADFPASNSSLFYSERPQIPFVWKRPGEIVKNPEFIL-GGATRTDICQGELGDCWLLAAIASLTLNQK- 103 (339)
T ss_dssp HHHHHTTCCCCCSSSCSSGGGTCCC--CCCSCEEECGGGTSSSCBSSC-SCSCGGGCBCCTTCSCHHHHHHHHHHTCHH-
T ss_pred HHHHHCCCeeECcCCCCCccccccCCCCCCCceEEChHHHcCCCeeee-CCCCccccccCCcCchHHHHHHHHHhcCcc-
Confidence 345567788999999874221 1 1234489999999999999988 689999999999999999999999999875
Q ss_pred ccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhhhhcCC
Q psy1431 411 FGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGG 490 (1043)
Q Consensus 411 ~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAyaKl~G~ 490 (1043)
+|.+++ |.++.+.+ ++.|+|+||||+||+|+.|+|||+||+.. |+++|++|.+++|+|++||||||||+|||
T Consensus 104 ----li~~v~-p~~q~~~~--~~~G~y~~r~~~~G~W~~VvVDD~LP~~~-g~~~f~~s~~~~e~W~~LLEKAyAKl~Gs 175 (339)
T 1ziv_A 104 ----ALARVI-PQDQSFGP--GYAGIFHFQFWQHSEWLDVVIDDRLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGS 175 (339)
T ss_dssp ----HHHHHS-CSSCCSST--TCCSEEEEEEECSSSEEEEEEECCEEESS-SSBSSSBCSSTTBCHHHHHHHHHHHHHTS
T ss_pred ----cceeEE-ecCCCccc--ccceEEEEEEeeCCEEEEEEEcCCCccCC-CceEEEecCCCCchhHHHHHHHHHHHcCC
Confidence 566655 77665543 78999999999999999999999999985 99999999999999999999999999999
Q ss_pred CCCC-CCccc--cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccC--cc-cccc-cc
Q psy1431 491 YDFP-GSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMK--KR-ERSR-VD 563 (1043)
Q Consensus 491 Y~~~-g~~~~--L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~--~~-~~~~-v~ 563 (1043)
|+++ ||++. |++||||+++. +.++. .++++|+.|.+++++|++| +|++... .-. +. +..+ +.
T Consensus 176 Y~~l~gG~~~eal~dLTG~~~~~-~~l~~------~~~~l~~~l~~~~~~g~l~---~~~~~~t-~~~~~e~~~~~GLv~ 244 (339)
T 1ziv_A 176 YEALKGGSAIEAMEDFTGGVAET-FQTKE------APENFYEILEKALKRGSLL---GCFIDTR-SAAESEARTPFGLIK 244 (339)
T ss_dssp SGGGTTCCHHHHHHHHHSCCCEE-EEGGG------CCTTHHHHHHHHHHHTCEE---EEECCCS-SGGGTTCBCTTSCBT
T ss_pred cccccCCCHHHHHHHhhCCceEE-EECCC------CcHHHHHHHHHHHhCCCeE---EEEeccC-CccchhhhhccCccc
Confidence 9975 66665 99999999999 88863 2678999999999999874 5654210 001 11 1112 99
Q ss_pred CceeeEeec-------cceEEEEeeCCCCcCccCCCCCCCCCCCCC---HHHHHHc-CCCCCCCCCCCCceEEEeccccc
Q psy1431 564 TMQSSVSWS-------QGLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRAL-NFDPNSASMFDNGIFWIDYESIL 632 (1043)
Q Consensus 564 ~HaYaV~~v-------~~~rll~LrNPWg~~eW~G~wsd~s~~~W~---~~~~~~l-~~~~~~~~~~~dG~FWm~~edf~ 632 (1043)
+|||+|+++ ++.|||+||||||+.||+|+|||.| .+|+ ++++++| +. ..+||+|||+|+||+
T Consensus 245 ~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s-~~W~~~~~~~~~~l~~~------~~~dG~FWMs~~Df~ 317 (339)
T 1ziv_A 245 GHAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSS-PEWRSVGPAEQKRLCHT------ALDDGEFWMAFKDFK 317 (339)
T ss_dssp TCCEEEEEEEEEEETTEEEEEEEEECCSSCCCCCSTTSTTC-HHHHHSCHHHHHHTTCC------CCSSSEEEEEHHHHH
T ss_pred CeeEEEeEEEEEecCCCceEEEEecCCCCCCccCCCCCcCC-hhccccCHHHHHHhhCC------CCCCCEEEEEHHHHH
Confidence 999998765 3579999999999999999999998 5898 7888888 64 348999999999999
Q ss_pred ccccEEEE-eccCCCCC
Q psy1431 633 RFYDVFYM-NWNPGLFS 648 (1043)
Q Consensus 633 ~~F~~~~i-~w~p~~f~ 648 (1043)
++|+.|+| +|+|+.+.
T Consensus 318 ~~F~~l~ic~~~p~~~~ 334 (339)
T 1ziv_A 318 AHFDKVEICNLTPDALE 334 (339)
T ss_dssp HHCCEEEEECCC-----
T ss_pred HhCCeEEEEEEcCcccc
Confidence 99999998 58888753
No 4
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=100.00 E-value=2.4e-61 Score=543.86 Aligned_cols=284 Identities=25% Similarity=0.467 Sum_probs=235.1
Q ss_pred hhhhcCCCCccCCCCCCC---CC-----ccc-CCCCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHh
Q psy1431 335 AEKFQYAVPFTDKEGPLI---LS-----PKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSA 405 (1043)
Q Consensus 335 ~~~~~~~~~f~D~~~~~~---l~-----~~q-~~~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la 405 (1043)
..|...+.+|+|++||+. |. +.+ +...+.|+||.||+++|+|+. +++++.||+||.+|||||||||++||
T Consensus 22 ~~c~~~~~~F~D~~Fp~~~~Sl~~~~~~~~~~~~~~~~W~Rp~ei~~~p~~~~-~~~~~~di~QG~lGDCwllaAla~la 100 (339)
T 2r9f_A 22 ARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGALGDCWLLAAIASLT 100 (339)
T ss_dssp HHHHHTTCCCCCTTSCSSHHHHCSSTTSTTSHHHHHCEEECHHHHCSSCBSCS-SCSCGGGCBCCSSSCHHHHHHHHHHT
T ss_pred HHHHHcCCceECcCCCCCccccccCCCCccccccCCceEEChHHHCcCCEEee-CCCCcCccccCCccCHHHHHHHHHHH
Confidence 345677889999999874 22 211 122489999999999999988 68999999999999999999999999
Q ss_pred cccccccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhh
Q psy1431 406 LYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYM 485 (1043)
Q Consensus 406 ~~~~~~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAya 485 (1043)
.++. +|.+++ |.++.+. .++.|+|+||||+||+|+.|+|||+||+.. |+++|++|.+++|+|++|||||||
T Consensus 101 ~~~~-----li~~v~-p~~q~~~--~~~~G~y~vr~~~~G~W~~VvVDD~LP~~~-g~~~f~~s~~~~e~W~~LLEKAyA 171 (339)
T 2r9f_A 101 LNET-----ILHRVV-PYGQSFQ--EGYAGIFHFQLWQFGEWVDVVVDDLLPTKD-GKLVFVHSAQGNEFWSALLEKAYA 171 (339)
T ss_dssp TCHH-----HHHHHS-CSCCCSS--TTCCSEEEEEEEETTEEEEEEEESCEEEET-TEESSCBCSSTTBCHHHHHHHHHH
T ss_pred hCch-----hhhheE-ecccccc--ccCCceEEEEEeeCCEEEEEEEcCCCcccC-CceEEeeeCCCCcccHHHHHHHHH
Confidence 9875 666655 7666543 478999999999999999999999999984 999999999999999999999999
Q ss_pred hhcCCCCC-CCCccc--cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccC-cc-ccc
Q psy1431 486 KVMGGYDF-PGSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMK-KR-ERS 560 (1043)
Q Consensus 486 Kl~G~Y~~-~g~~~~--L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~-~~-~~~ 560 (1043)
|+||||++ .||++. |++||||+++. +.++. .++.+|+.|.+++++|++| +|++....... +. +..
T Consensus 172 Kl~GsY~~l~gg~~~eal~dLTG~~~~~-~~l~~------~~~~l~~~l~~~~~~g~l~---~~s~~~t~~~~~~~~~~~ 241 (339)
T 2r9f_A 172 KVNGSYEALSGGCTSEAFEDFTGGVTEW-YDLQK------APSDLYQIILKALERGSLL---GCSINISDIRDLEAITFK 241 (339)
T ss_dssp HHHTSSGGGSSCCHHHHHHHTTCCEEEE-EEGGG------CCTTHHHHHHHHHHHTCEE---EEECCCSSSSTTCSBCTT
T ss_pred HHcCCcccccCCCHHHHHHHHhCCceEE-EECCC------CchHHHHHHHHHHHCCCeE---EEEecCCCccchhhhhcc
Confidence 99999996 466665 99999999999 88863 2578999999999999875 66542100011 11 112
Q ss_pred c-ccCceeeEeecc-------ceEEEEeeCCCCcCccCCCCCCCCCCCCC---HHHHHHcCCCCCCCCCCCCceEEEecc
Q psy1431 561 R-VDTMQSSVSWSQ-------GLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYE 629 (1043)
Q Consensus 561 ~-v~~HaYaV~~v~-------~~rll~LrNPWg~~eW~G~wsd~s~~~W~---~~~~~~l~~~~~~~~~~~dG~FWm~~e 629 (1043)
+ +.+|||+|+++. +.|||+||||||+.||+|+|||.| .+|+ ++++++|+. ..+||+|||+|+
T Consensus 242 GLv~~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s-~~W~~~~~~~~~~l~~------~~~dG~FWMs~~ 314 (339)
T 2r9f_A 242 NLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNS-YEWNKVDPYEREQLRV------KMEDGEFWMSFR 314 (339)
T ss_dssp SCBTTCCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTC-GGGGGSCHHHHHHHCC------CCCSSEEEEEHH
T ss_pred CCcCCceEEEeEEEEEecCCCceEEEEEeCCCCCccccCCCCcCC-ccccccCHHHHHHhCC------CCCCCEEEEEHH
Confidence 2 999999987653 479999999999999999999998 6998 789999986 358999999999
Q ss_pred cccccccEEEEeccCC
Q psy1431 630 SILRFYDVFYMNWNPG 645 (1043)
Q Consensus 630 df~~~F~~~~i~w~p~ 645 (1043)
||+++|+.|+|||.+.
T Consensus 315 Df~~~F~~l~ic~~~~ 330 (339)
T 2r9f_A 315 DFIREFTKLEICNLTP 330 (339)
T ss_dssp HHHHHCCEEEEEECCC
T ss_pred HHHHhCCcEEEEccCc
Confidence 9999999999997643
No 5
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.2e-61 Score=538.81 Aligned_cols=280 Identities=26% Similarity=0.498 Sum_probs=231.3
Q ss_pred hhhhcCCCCccCCCCCCC---C-----Cccc-CCCCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHh
Q psy1431 335 AEKFQYAVPFTDKEGPLI---L-----SPKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSA 405 (1043)
Q Consensus 335 ~~~~~~~~~f~D~~~~~~---l-----~~~q-~~~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la 405 (1043)
.+|...+.+|+|++||+. | .+.+ +...+.|+||+||+++|+|+. +++++.||+||.+|||||||||++||
T Consensus 17 ~~c~~~~~~F~D~~Fp~~~~Sl~~~~~~~~~~~~~~~~W~Rp~ei~~~p~~~~-~~~~~~di~QG~lGDCwllaAla~la 95 (326)
T 2nqa_A 17 QQCLDSGVLFKDPEFPACPSALGYKDLGPGSPQTQGIIWKRPTELCPSPQFIV-GGATRTDICQGGLGDCWLLAAIASLT 95 (326)
T ss_dssp HHHHHHTCCCCCTTSCSSHHHHTC---------CCSCEEECHHHHCSSCBSCS-SCSCGGGCBCCSSCCHHHHHHHHHHH
T ss_pred HHHHHcCCceECcCCCCCccccccCCCCccccccCCCeEEChHHHCcCCEEee-CCCcccccccCCccccHHHHHHHHHH
Confidence 345667889999999874 2 2222 245689999999999999988 58999999999999999999999999
Q ss_pred cccccccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhh
Q psy1431 406 LYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYM 485 (1043)
Q Consensus 406 ~~~~~~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAya 485 (1043)
+++. +|.+++ |+++.+. .++.|+|+||||+||+|+.|+|||+||+.. |+++|++|.+++|+|++|||||||
T Consensus 96 ~~~~-----li~~v~-p~~q~~~--~~~~G~y~vr~~~~G~w~~VvVDD~lP~~~-g~~~f~~s~~~~e~W~~LlEKAyA 166 (326)
T 2nqa_A 96 LNEE-----LLYRVV-PRDQDFQ--ENYAGIFHFQFWQYGEWVEVVIDDRLPTKN-GQLLFLHSEQGNEFWSALLEKAYA 166 (326)
T ss_dssp TSHH-----HHHHHS-CSSCCSS--TTCSSEEEEEEECSSSEEEEEEECCEEEET-TEESSCBCSSTTBCHHHHHHHHHH
T ss_pred hChH-----HHHhhc-CcCcCcc--ccCCceEEEEEEECCEEEEEEEeCcCcccC-CceEEeecCCCCcchhHHHHHHHH
Confidence 9875 666655 7666543 478999999999999999999999999985 999999999999999999999999
Q ss_pred hhcCCCCC-CCCccc--cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccC--cc-cc
Q psy1431 486 KVMGGYDF-PGSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMK--KR-ER 559 (1043)
Q Consensus 486 Kl~G~Y~~-~g~~~~--L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~--~~-~~ 559 (1043)
|+||||++ .||++. |++||||+++. +.++. ..+.+|+.|.+++++|++| +|++... .-. +. +.
T Consensus 167 Kl~GsY~~l~gg~~~eal~dLTG~~~~~-~~l~~------~~~~l~~~l~~~~~~g~l~---~~~~~~~-~~~~~~~~~~ 235 (326)
T 2nqa_A 167 KLNGCYEALAGGSTVEGFEDFTGGISEF-YDLKK------PPANLYQIIRKALCAGSLL---GCSIDVY-SAAEAEAITS 235 (326)
T ss_dssp HHHSSSGGGSBSSCCTBTTTGGGCCEEE-EETTS------CCTTHHHHHHHHHHTTCEE---EEECCCS-SGGGTTCBCT
T ss_pred HHcCChhhccCCCHHHHHHHHhCCceEE-EECCC------CcHHHHHHHHHHHhCCCce---EEeecCC-Ccccchhhhc
Confidence 99999996 566665 99999999999 98873 2577999999999999874 5654210 001 11 11
Q ss_pred cc-ccCceeeEeecc-------ceEEEEeeCCCCcCccCCCCCCCCCCCCC---HHHHHHcCCCCCCCCCCCCceEEEec
Q psy1431 560 SR-VDTMQSSVSWSQ-------GLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDY 628 (1043)
Q Consensus 560 ~~-v~~HaYaV~~v~-------~~rll~LrNPWg~~eW~G~wsd~s~~~W~---~~~~~~l~~~~~~~~~~~dG~FWm~~ 628 (1043)
.. +.+|||+|+++. +.|||+||||||+.||+|+|||.| .+|+ ++++++|++ ..+||+|||+|
T Consensus 236 ~GLv~~HaYsVl~v~~v~~~~~~~~lv~lrNPWg~~eW~G~wsd~s-~~W~~~~~~~~~~l~~------~~~dG~FWMs~ 308 (326)
T 2nqa_A 236 QKLVKSHAYSVTGVEEVNFQGHPEKLIRLRNPWGEVEWSGAWSDDA-PEWNHIDPRRKEELDK------KVEDGEFWMSL 308 (326)
T ss_dssp TSCBSSCCEEEEEEEEEEETTEEEEEEEEECTTCC-CCCSTTSTTC-GGGGGSCHHHHHHHCC------CCCSSEEEEEH
T ss_pred cCCccCceEEEEEEEEEecCCCceEEEEecCCCcCccccCCCCCCC-ccccccCHHHHHHhCC------CCCCCEEEEEH
Confidence 12 999999987652 479999999999999999999998 5998 789999986 35899999999
Q ss_pred ccccccccEEEEec
Q psy1431 629 ESILRFYDVFYMNW 642 (1043)
Q Consensus 629 edf~~~F~~~~i~w 642 (1043)
+||+++|+.|+||.
T Consensus 309 ~df~~~F~~l~ic~ 322 (326)
T 2nqa_A 309 SDFVRQFSRLEICN 322 (326)
T ss_dssp HHHHHHCSEEEEEC
T ss_pred HHHHHhCCcEEEEE
Confidence 99999999999984
No 6
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-39 Score=362.14 Aligned_cols=179 Identities=28% Similarity=0.472 Sum_probs=155.8
Q ss_pred CCCCcChH----hhhcCCCCccCCCCCCCC--------CCCC-CCCCceEeccccccCCCeeecCCccCccCcccCCCCC
Q psy1431 41 PFMNVDLA----EKFQYAVPFTDKEGPLIL--------SPKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSD 107 (1043)
Q Consensus 41 p~~~~d~~----~~~~~~~~f~D~~fp~~l--------~~~~-~~~~~~W~Rp~e~~~~~~~~~~~~~~~~di~Qg~lgD 107 (1043)
++.+++++ +|.+.+.+|+|++|||.. .+.+ +...+.|+||.||+.+|++|.++ +++.||+||.+||
T Consensus 6 ~~~~~~~~~l~~~c~~~~~~F~D~~Fp~~~~Sl~~~~~~~~~~~~~~~~W~Rp~ei~~~p~~~~~~-~~~~di~QG~lGD 84 (326)
T 2nqa_A 6 KYLGQDFKTLRQQCLDSGVLFKDPEFPACPSALGYKDLGPGSPQTQGIIWKRPTELCPSPQFIVGG-ATRTDICQGGLGD 84 (326)
T ss_dssp EGGGCCHHHHHHHHHHHTCCCCCTTSCSSHHHHTC---------CCSCEEECHHHHCSSCBSCSSC-SCGGGCBCCSSCC
T ss_pred cCCCcCHHHHHHHHHHcCCceECcCCCCCccccccCCCCccccccCCCeEEChHHHCcCCEEeeCC-CcccccccCCccc
Confidence 44556665 488899999999999842 2222 34569999999999999999886 8999999999999
Q ss_pred chHHHHHHHHhhhhhhccCceEEEEeecCCCCCCCcccCCceEEEEeeeCCcEEEEEEcCCCccccCCceEEeecCCCCc
Q psy1431 108 CSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNE 187 (1043)
Q Consensus 108 C~~laal~~la~~~~~~~~~l~~~~i~p~~~~~~~~~n~~G~y~v~l~~~G~w~~V~VDD~lP~~~~g~~~~~~s~~~~e 187 (1043)
|||||||++||++++.+.+ |+|.++... .|..|+|+||||.+|+|+.|+|||+||+.. |+++|+++.+++|
T Consensus 85 CwllaAla~la~~~~li~~------v~p~~q~~~--~~~~G~y~vr~~~~G~w~~VvVDD~lP~~~-g~~~f~~s~~~~e 155 (326)
T 2nqa_A 85 CWLLAAIASLTLNEELLYR------VVPRDQDFQ--ENYAGIFHFQFWQYGEWVEVVIDDRLPTKN-GQLLFLHSEQGNE 155 (326)
T ss_dssp HHHHHHHHHHHTSHHHHHH------HSCSSCCSS--TTCSSEEEEEEECSSSEEEEEEECCEEEET-TEESSCBCSSTTB
T ss_pred cHHHHHHHHHHhChHHHHh------hcCcCcCcc--ccCCceEEEEEEECCEEEEEEEeCcCcccC-CceEEeecCCCCc
Confidence 9999999999999988765 667765544 356799999999999999999999999987 9999999999999
Q ss_pred hhHHHHHHHhhhhcCCcC-CCCCCcccccccccccceeEEEec
Q psy1431 188 LWVSILEKAYMKVMGGYD-FPGSNSPGIRRSFTTVDCLRIEFN 229 (1043)
Q Consensus 188 lW~~LlEKAyaK~~G~Y~-~~g~~~~~~l~~lTG~~~~~idl~ 229 (1043)
+|++||||||||+||||+ +.||++.++|.||||++++.|+|+
T Consensus 156 ~W~~LlEKAyAKl~GsY~~l~gg~~~eal~dLTG~~~~~~~l~ 198 (326)
T 2nqa_A 156 FWSALLEKAYAKLNGCYEALAGGSTVEGFEDFTGGISEFYDLK 198 (326)
T ss_dssp CHHHHHHHHHHHHHSSSGGGSBSSCCTBTTTGGGCCEEEEETT
T ss_pred chhHHHHHHHHHHcCChhhccCCCHHHHHHHHhCCceEEEECC
Confidence 999999999999999999 689999999999999999999985
No 7
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=100.00 E-value=1.3e-38 Score=358.87 Aligned_cols=172 Identities=26% Similarity=0.437 Sum_probs=152.7
Q ss_pred HhhhcCCCCccCCCCCCCCCCC----CCCCCceEeccccccCCCeeecCCccCccCcccCCCCCchHHHHHHHHhhhhhh
Q psy1431 48 AEKFQYAVPFTDKEGPLILSPK----QKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERR 123 (1043)
Q Consensus 48 ~~~~~~~~~f~D~~fp~~l~~~----~~~~~~~W~Rp~e~~~~~~~~~~~~~~~~di~Qg~lgDC~~laal~~la~~~~~ 123 (1043)
++|++.+.+|+|++|||..+.. .....+.|+||.||+.+|++|.++ +++.||+||.+|||||||||++||++++.
T Consensus 26 ~~c~~~~~~F~D~~Fp~~~~Sl~~~~~~~~~~~W~Rp~ei~~~p~~~~~~-~~~~dI~QG~lGDCwllaAla~la~~p~l 104 (339)
T 1ziv_A 26 QECLQRGTLFEDADFPASNSSLFYSERPQIPFVWKRPGEIVKNPEFILGG-ATRTDICQGELGDCWLLAAIASLTLNQKA 104 (339)
T ss_dssp HHHHHTTCCCCCSSSCSSGGGTCCC--CCCSCEEECGGGTSSSCBSSCSC-SCGGGCBCCTTCSCHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCeeECcCCCCCccccccCCCCCCCceEEChHHHcCCCeeeeCC-CCccccccCCcCchHHHHHHHHHhcCccc
Confidence 3588999999999999953321 123349999999999999999876 89999999999999999999999999988
Q ss_pred ccCceEEEEeecCCCCCCCcccCCceEEEEeeeCCcEEEEEEcCCCccccCCceEEeecCCCCchhHHHHHHHhhhhcCC
Q psy1431 124 FGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGG 203 (1043)
Q Consensus 124 ~~~~l~~~~i~p~~~~~~~~~n~~G~y~v~l~~~G~w~~V~VDD~lP~~~~g~~~~~~s~~~~elW~~LlEKAyaK~~G~ 203 (1043)
+.+ |+|.++...+ +..|+|+||||.+|+|+.|+|||+||+.. |+++|+++.+++|+|++||||||||++||
T Consensus 105 i~~------v~p~~q~~~~--~~~G~y~~r~~~~G~W~~VvVDD~LP~~~-g~~~f~~s~~~~e~W~~LLEKAyAKl~Gs 175 (339)
T 1ziv_A 105 LAR------VIPQDQSFGP--GYAGIFHFQFWQHSEWLDVVIDDRLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGS 175 (339)
T ss_dssp HHH------HSCSSCCSST--TCCSEEEEEEECSSSEEEEEEECCEEESS-SSBSSSBCSSTTBCHHHHHHHHHHHHHTS
T ss_pred cee------EEecCCCccc--ccceEEEEEEeeCCEEEEEEEcCCCccCC-CceEEEecCCCCchhHHHHHHHHHHHcCC
Confidence 876 6787665544 45699999999999999999999999987 99999999999999999999999999999
Q ss_pred cC-CCCCCcccccccccccceeEEEec
Q psy1431 204 YD-FPGSNSPGIRRSFTTVDCLRIEFN 229 (1043)
Q Consensus 204 Y~-~~g~~~~~~l~~lTG~~~~~idl~ 229 (1043)
|+ +.||++.++|.||||++++.|+|+
T Consensus 176 Y~~l~gG~~~eal~dLTG~~~~~~~l~ 202 (339)
T 1ziv_A 176 YEALKGGSAIEAMEDFTGGVAETFQTK 202 (339)
T ss_dssp SGGGTTCCHHHHHHHHHSCCCEEEEGG
T ss_pred cccccCCCHHHHHHHhhCCceEEEECC
Confidence 99 589999999999999999999975
No 8
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=100.00 E-value=8.8e-39 Score=360.13 Aligned_cols=179 Identities=27% Similarity=0.426 Sum_probs=155.8
Q ss_pred CCCCcChH----hhhcCCCCccCCCCCCCCC--------CCC-CCCCceEeccccccCCCeeecCCccCccCcccCCCCC
Q psy1431 41 PFMNVDLA----EKFQYAVPFTDKEGPLILS--------PKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSD 107 (1043)
Q Consensus 41 p~~~~d~~----~~~~~~~~f~D~~fp~~l~--------~~~-~~~~~~W~Rp~e~~~~~~~~~~~~~~~~di~Qg~lgD 107 (1043)
++.+++++ +|.+.+.+|+|++|||..+ +.+ +...+.|+||.||+.+|+|+.++ +++.||+||.+||
T Consensus 11 ~~~~~~~~~l~~~c~~~~~~F~D~~Fp~~~~Sl~~~~~~~~~~~~~~~~W~Rp~ei~~~p~~~~~~-~~~~di~QG~lGD 89 (339)
T 2r9f_A 11 KYLGQDYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVDG-ATRTDICQGALGD 89 (339)
T ss_dssp EGGGCCHHHHHHHHHHTTCCCCCTTSCSSHHHHCSSTTSTTSHHHHHCEEECHHHHCSSCBSCSSC-SCGGGCBCCSSSC
T ss_pred cccCcCHHHHHHHHHHcCCceECcCCCCCccccccCCCCccccccCCceEEChHHHCcCCEEeeCC-CCcCccccCCccC
Confidence 34455555 4889999999999998422 211 12238999999999999999876 8999999999999
Q ss_pred chHHHHHHHHhhhhhhccCceEEEEeecCCCCCCCcccCCceEEEEeeeCCcEEEEEEcCCCccccCCceEEeecCCCCc
Q psy1431 108 CSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNE 187 (1043)
Q Consensus 108 C~~laal~~la~~~~~~~~~l~~~~i~p~~~~~~~~~n~~G~y~v~l~~~G~w~~V~VDD~lP~~~~g~~~~~~s~~~~e 187 (1043)
|||||||++||++++.+.+ |+|.++... .|..|+|+||||.+|+|+.|+|||+||+.. |+++|+++.+++|
T Consensus 90 CwllaAla~la~~~~li~~------v~p~~q~~~--~~~~G~y~vr~~~~G~W~~VvVDD~LP~~~-g~~~f~~s~~~~e 160 (339)
T 2r9f_A 90 CWLLAAIASLTLNETILHR------VVPYGQSFQ--EGYAGIFHFQLWQFGEWVDVVVDDLLPTKD-GKLVFVHSAQGNE 160 (339)
T ss_dssp HHHHHHHHHHTTCHHHHHH------HSCSCCCSS--TTCCSEEEEEEEETTEEEEEEEESCEEEET-TEESSCBCSSTTB
T ss_pred HHHHHHHHHHHhCchhhhh------eEecccccc--ccCCceEEEEEeeCCEEEEEEEcCCCcccC-CceEEeeeCCCCc
Confidence 9999999999999988765 667765543 456799999999999999999999999987 9999999999999
Q ss_pred hhHHHHHHHhhhhcCCcC-CCCCCcccccccccccceeEEEec
Q psy1431 188 LWVSILEKAYMKVMGGYD-FPGSNSPGIRRSFTTVDCLRIEFN 229 (1043)
Q Consensus 188 lW~~LlEKAyaK~~G~Y~-~~g~~~~~~l~~lTG~~~~~idl~ 229 (1043)
+|++||||||||++|||+ +.||++.++|.||||++++.|+|+
T Consensus 161 ~W~~LLEKAyAKl~GsY~~l~gg~~~eal~dLTG~~~~~~~l~ 203 (339)
T 2r9f_A 161 FWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQ 203 (339)
T ss_dssp CHHHHHHHHHHHHHTSSGGGSSCCHHHHHHHTTCCEEEEEEGG
T ss_pred ccHHHHHHHHHHHcCCcccccCCCHHHHHHHHhCCceEEEECC
Confidence 999999999999999999 589999999999999999999985
No 9
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=100.00 E-value=3.6e-35 Score=364.12 Aligned_cols=179 Identities=27% Similarity=0.460 Sum_probs=157.5
Q ss_pred CCCCcChH----hhhcCCCCccCCCCCCCCC--------CCC-CCCCceEeccccccCCCeeecCCccCccCcccCCCCC
Q psy1431 41 PFMNVDLA----EKFQYAVPFTDKEGPLILS--------PKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSD 107 (1043)
Q Consensus 41 p~~~~d~~----~~~~~~~~f~D~~fp~~l~--------~~~-~~~~~~W~Rp~e~~~~~~~~~~~~~~~~di~Qg~lgD 107 (1043)
++.++++. +|.+.+.+|+|++|||..+ +.+ +...+.|+||.||+.+|+++.++ +++.||+||.+||
T Consensus 26 ~~~~~~~~~l~~~c~~~~~~f~D~~Fp~~~~sl~~~~~~~~~~~~~~~~W~Rp~e~~~~p~~~~~~-~~~~di~QG~lgD 104 (714)
T 3bow_A 26 KYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIGG-ATRTDICQGALGD 104 (714)
T ss_dssp EGGGCCHHHHHHHHHHHTCCCCCTTSCSSGGGTCSSTTSTTCGGGTTCEEECHHHHCSSCBSCSSC-SCGGGCBCCSSSC
T ss_pred cccCCCHHHHHHHHHHcCCeeeCcCCCCCccccccCCCCccccccCCceEEChHHHhcCCeeeeCC-CCccccccCCcCC
Confidence 45556665 4888999999999998432 222 23458999999999999999876 8999999999999
Q ss_pred chHHHHHHHHhhhhhhccCceEEEEeecCCCCCCCcccCCceEEEEeeeCCcEEEEEEcCCCccccCCceEEeecCCCCc
Q psy1431 108 CSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNE 187 (1043)
Q Consensus 108 C~~laal~~la~~~~~~~~~l~~~~i~p~~~~~~~~~n~~G~y~v~l~~~G~w~~V~VDD~lP~~~~g~~~~~~s~~~~e 187 (1043)
|||||||++||.+++.+.+ |+|.+++..+ ++.|+|+||||.+|+|+.|+|||+||+.. |+++|+++.+++|
T Consensus 105 Cw~laala~la~~~~ll~~------v~~~~~~~~~--~~~G~y~~~~~~~G~w~~VvvDD~lP~~~-g~~~f~~s~~~~e 175 (714)
T 3bow_A 105 SWLLAAIASLTLNEEILAR------VVPLDQSFQE--NYAGIFHFQFWQYGEWVEVVVDDRLPTKD-GELLFVHSAEGSE 175 (714)
T ss_dssp HHHHHHHHHHTTSHHHHHH------HSCTTCCSSS--SCSSEEEEEEEETTEEEEEEEESCEEEET-TEESSCBCSSTTB
T ss_pred hHHHHHHHHHHhChHHHHh------hcCcCcCccc--CCceEEEEEEeeCCEEEEEEEeccceeeC-CceEEeecCCCCc
Confidence 9999999999999988876 6787665443 55699999999999999999999999987 9999999999999
Q ss_pred hhHHHHHHHhhhhcCCcC-CCCCCcccccccccccceeEEEec
Q psy1431 188 LWVSILEKAYMKVMGGYD-FPGSNSPGIRRSFTTVDCLRIEFN 229 (1043)
Q Consensus 188 lW~~LlEKAyaK~~G~Y~-~~g~~~~~~l~~lTG~~~~~idl~ 229 (1043)
+|++||||||||+||||+ +.||++.++|.||||++++.|+|+
T Consensus 176 ~W~~LlEKAyAK~~G~Y~~l~gg~~~~al~~lTG~~~~~~~l~ 218 (714)
T 3bow_A 176 FWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELR 218 (714)
T ss_dssp CHHHHHHHHHHHHTSSSGGGSSBCHHHHHHHHHCCEEEEEETT
T ss_pred chHHHHHHHHHHHhCCcccccCCCHHHHHHHhhCCCeEEEEcC
Confidence 999999999999999999 589999999999999999999985
No 10
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=100.00 E-value=3.6e-34 Score=365.52 Aligned_cols=180 Identities=26% Similarity=0.409 Sum_probs=159.2
Q ss_pred CCCCCcChH----hhhcCCCCccCCCCCCCCC--------CCC-CCCCceEeccccccCCCeeecCCccCccCcccCCCC
Q psy1431 40 VPFMNVDLA----EKFQYAVPFTDKEGPLILS--------PKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVS 106 (1043)
Q Consensus 40 ~p~~~~d~~----~~~~~~~~f~D~~fp~~l~--------~~~-~~~~~~W~Rp~e~~~~~~~~~~~~~~~~di~Qg~lg 106 (1043)
.++.++++. +|.+.+.+|+|++|||..+ +.+ +...+.|+||.||+.+|+++.++ +++.||+||.+|
T Consensus 25 ~~~~~~~~~~l~~~c~~~~~~f~D~~Fp~~~~sl~~~~~~~~~~~~~~~~W~Rp~e~~~~~~~~~~~-~~~~di~Qg~lg 103 (900)
T 1qxp_A 25 IKYLNQDYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVDG-ATRTDICQGALG 103 (900)
T ss_dssp BCGGGCCHHHHHHHHHTTTCCCCCSSSCSSSGGGCSSSSSSSCGGGCSCCCBCGGGSSSSCBSCCCC-CSSCCCCCCTTS
T ss_pred ccccccCHHHHHHHHHHcCCeeECcCCCCCccccccCCCCcccccccCceEEChHHHccCCeeeeCC-CCcccccCCCcc
Confidence 566677776 4899999999999998532 222 23458999999999999999876 899999999999
Q ss_pred CchHHHHHHHHhhhhhhccCceEEEEeecCCCCCCCcccCCceEEEEeeeCCcEEEEEEcCCCccccCCceEEeecCCCC
Q psy1431 107 DCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKN 186 (1043)
Q Consensus 107 DC~~laal~~la~~~~~~~~~l~~~~i~p~~~~~~~~~n~~G~y~v~l~~~G~w~~V~VDD~lP~~~~g~~~~~~s~~~~ 186 (1043)
||||||||++||.+++.+.+ |+|.++... .++.|+|+||||.+|+|+.|+|||+||+.. |+++|+++.+++
T Consensus 104 dcw~laal~~l~~~~~~~~~------~~~~~~~~~--~~~~G~y~~~~~~~G~w~~V~vDD~lP~~~-g~~~f~~s~~~~ 174 (900)
T 1qxp_A 104 DSWLLAAIASLTLNETILHR------VVPYGQSFQ--EGYAGIFHFQLWQFGEWVDVVVDDLLPTKD-GKLVFVHSAQGN 174 (900)
T ss_dssp CSTTHHHHHHHHTCHHHHHT------TSCSSCCSS--TTCSSEEEEEEEETTEEEEEEEESCBCEET-TEESSSCCSSSC
T ss_pred cHHHHHHHHHHhhCHHHHHh------hcCCCcccc--cccCceEEEEEeECCEEEEEEECCcccccC-CceeeeecCCCC
Confidence 99999999999999998876 668766544 356799999999999999999999999987 999999999999
Q ss_pred chhHHHHHHHhhhhcCCcC-CCCCCcccccccccccceeEEEec
Q psy1431 187 ELWVSILEKAYMKVMGGYD-FPGSNSPGIRRSFTTVDCLRIEFN 229 (1043)
Q Consensus 187 elW~~LlEKAyaK~~G~Y~-~~g~~~~~~l~~lTG~~~~~idl~ 229 (1043)
|+|++||||||||+||||+ +.||++.++|.+|||++++.|+|+
T Consensus 175 e~W~~LlEKAyaK~~G~Y~~l~gg~~~~~l~~lTG~~~~~~~~~ 218 (900)
T 1qxp_A 175 EFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQ 218 (900)
T ss_dssp BCHHHHHHHHHHHHHSSSGGGSSCCHHHHHHHTTSCBCCEEEGG
T ss_pred cchHHHHHHHHHHHhCCchhcCCCCHHHHHHHhhCCCeEEEecC
Confidence 9999999999999999999 589999999999999999999985
No 11
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=261.20 Aligned_cols=137 Identities=42% Similarity=0.817 Sum_probs=125.5
Q ss_pred ceEeecCCCCceeEEEEceeecCCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEEcCCCceeeeEEEEEEeCCCCC
Q psy1431 903 FRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDET 982 (1043)
Q Consensus 903 ~~l~~~~~~~~~~~~i~G~W~~~tAGG~~n~~~ty~~NPqy~l~l~~~~~~~~~l~i~l~~~~~~~ig~~v~~~~~~~~~ 982 (1043)
-.+.+++.|++++++++|+|++.|||||+|+++||++||||.|+|.+++. ++|.|++++.++|||+||+++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~G~W~g~tAGGc~n~~~tf~~NPQy~l~l~~~~~----v~i~L~~~~~~~IGf~v~~v~~~~~~ 87 (148)
T 2qfe_A 12 SGLVPRGSPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEKTGP----LLIELRGPRQYSVGFEVVTVSTLGDP 87 (148)
T ss_dssp CCCCCTTCSCCEEEEEEEEECGGGCCCCTTCTTTGGGSCCEEEEESSCEE----EEEEEECCTTSEEEEEEEEEECCSCC
T ss_pred ccccCCCCCcceEEEEcCEECCCccCCCccccccccCCcEEEEEEcCCcc----EEEEecCCCccccceEEEEECCCCCc
Confidence 46888999999999999999999999999999999999999999999863 89999999889999999999865444
Q ss_pred cCCCcccccCCCcccceEEEEeecCCCccEEEEeccCCCCCccCeEEEEEeCCceeEEecC
Q psy1431 983 ATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITISRIR 1043 (1043)
Q Consensus 983 ~~~~~~~~~sg~yr~g~~~~~~~~L~~G~Y~IVPSTf~p~~~g~F~L~V~S~~~~~l~~i~ 1043 (1043)
+...|....++.|++++++++...|+||.|+||||||+|+++|+|.|||+|+.++.+++|+
T Consensus 88 l~~~f~~~~s~~~~~~~~v~~~~~L~pG~YvIVPSTf~P~~eg~F~LrVfs~~~~~l~~l~ 148 (148)
T 2qfe_A 88 GPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFLDFNSIIPIKITQLQ 148 (148)
T ss_dssp CTTCCSEEECCSCEESEEEEEEEEECSEEEEEEEEESSTTCCEEEEEEEEESSCCEEEECC
T ss_pred cccceeeeCCceeccCceEEEEEEcCCCCEEEEeccCCCCCccceEEEEEeCCCCeeEeCC
Confidence 4456677889999999999998899999999999999999999999999999999999986
No 12
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=157.25 Aligned_cols=128 Identities=9% Similarity=0.034 Sum_probs=100.1
Q ss_pred CCCceeeeeeeeecccccCCCCCcccCcccccccccccceEEEEEeeCCCCCcCCCCCCCCCCCCCccEEEEEeeccccc
Q psy1431 646 LFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQ 725 (1043)
Q Consensus 646 ~f~~~~~~h~~~~W~~~~~~~gg~~~~~~~~~~~~~~NPQf~l~~~~~~~~~~~~~~~~~~~~~~~~~~VwilL~rh~~~ 725 (1043)
-|.+...+++. | ++..+ |||.+...++ +.||||.|++.++ ++|+|.|+.
T Consensus 20 ~~~~~~~~~G~--W-~g~tA-GGc~n~~~tf----~~NPQy~l~l~~~-------------------~~v~i~L~~---- 68 (148)
T 2qfe_A 20 PYTLSKRINGK--W-SGQSA-GGCGNFQETH----KNNPIYQFHIEKT-------------------GPLLIELRG---- 68 (148)
T ss_dssp SCCEEEEEEEE--E-CGGGC-CCCTTCTTTG----GGSCCEEEEESSC-------------------EEEEEEEEC----
T ss_pred CcceEEEEcCE--E-CCCcc-CCCccccccc----cCCcEEEEEEcCC-------------------ccEEEEecC----
Confidence 35556678877 9 45544 8998876566 9999999999761 789999942
Q ss_pred cccccCCceeeEEEEEEeCCeeeecCCCCCCccccccccCceEEEEEEecCCCCccEEEEeccccCccccceEEEEeecC
Q psy1431 726 LEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATC 805 (1043)
Q Consensus 726 ~~~~~~~~~~I~l~V~~~~g~rv~~~~~~~~~~~g~~~ns~~~l~r~~l~p~~~~~YtlVpst~~~~~~~~F~LriyS~~ 805 (1043)
.+...|||+||+++.++..+++.......+.|.+.+++..++.|+| |.|+|||||++++++++|+|||||++
T Consensus 69 -----~~~~~IGf~v~~v~~~~~~l~~~f~~~~s~~~~~~~~v~~~~~L~p---G~YvIVPSTf~P~~eg~F~LrVfs~~ 140 (148)
T 2qfe_A 69 -----PRQYSVGFEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPS---GIFNIIPSTFLPKQEGPFFLDFNSII 140 (148)
T ss_dssp -----CTTSEEEEEEEEEECCSCCCTTCCSEEECCSCEESEEEEEEEEECS---EEEEEEEEESSTTCCEEEEEEEEESS
T ss_pred -----CCccccceEEEEECCCCCccccceeeeCCceeccCceEEEEEEcCC---CCEEEEeccCCCCCccceEEEEEeCC
Confidence 2235799999998754444433222344677888888989999987 99999999999999999999999999
Q ss_pred Ccccccc
Q psy1431 806 PFRLEKI 812 (1043)
Q Consensus 806 ~~~~~~l 812 (1043)
++.+++|
T Consensus 141 ~~~l~~l 147 (148)
T 2qfe_A 141 PIKITQL 147 (148)
T ss_dssp CCEEEEC
T ss_pred CCeeEeC
Confidence 9998876
No 13
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=89.24 E-value=0.33 Score=45.37 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
.+++|..++.+|+..|..+++.+|+.+|.+|++.+...++
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999865544
No 14
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=88.78 E-value=0.43 Score=41.93 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhcccc
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTL 291 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l 291 (1043)
.+.+|..++.+|+..|..|++++|+.+|.++++.+...+
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~ 47 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLAL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999875544
No 15
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=88.35 E-value=0.11 Score=60.25 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=37.8
Q ss_pred cccccCCCcccceEEEEeecCCCccEEEEeccCCCCCccCeEEEEEeCCceeE
Q psy1431 987 FKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITI 1039 (1043)
Q Consensus 987 ~~~~~sg~yr~g~~~~~~~~L~~G~Y~IVPSTf~p~~~g~F~L~V~S~~~~~l 1039 (1043)
+.++.+..|.+.+.+ ..|+||.| ||||+|+++|+|.||+++...+..
T Consensus 241 ~~~a~s~~y~n~ReV---~~L~pG~y---PSt~Ep~~EgdflLRvfs~k~iD~ 287 (450)
T 3sg6_A 241 FKSAMPEGYIQERTI---FFKDDGNY---KTRAEVKFEGDTLVNRIELKGIDF 287 (450)
T ss_dssp HHHTTTTCEEEEEEE---EETTSCEE---EEEEEEEEETTEEEEEEEEEEESC
T ss_pred ccccCCccceeecce---eccCCCCC---CcccchhhccchhhheeccccCCc
Confidence 445556668877666 46999999 999999999999999998765543
No 16
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=88.14 E-value=0.53 Score=41.50 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 254 SEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 254 l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
..+|..++.+|+..|..|++.+|+.+|.++++.+...++
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999865544
No 17
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=88.11 E-value=0.63 Score=40.69 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=38.4
Q ss_pred ChhhhhhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 248 SRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 248 sk~~~~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
++....+++|..++.+|...|..|++.+|+.+|.++++.+...++
T Consensus 10 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 10 SAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 344456789999999999999999999999999999999755443
No 18
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=84.99 E-value=0.91 Score=40.58 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
-+.+|..++.+|...|..+++.+|+.+|.+|++.+...++
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk 50 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999865544
No 19
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=84.54 E-value=1 Score=39.35 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=35.5
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
-+++|..++.+|...|..|++.+|+.+|.++++.+...++
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999855443
No 20
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.94 E-value=1.4 Score=40.77 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
-+.+|.-.+++|+..||.|+++.|+++|.+.++.+...|.
T Consensus 18 ~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~ 57 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGIS 57 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcc
Confidence 4779999999999999999999999999999999866543
No 21
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=75.03 E-value=2 Score=37.76 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhhHhhhhc---CchHHHHHHHHHHHHhhcccc
Q psy1431 253 LSEKCHFLLSQALDADEA---GLKDTAVQLYMQSIEMTKPTL 291 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~---~~~~~a~~~y~~~~e~~~~~l 291 (1043)
.+++|...+++|+..|+. |++++|+++|.+.++.+...+
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi 53 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGI 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhc
Confidence 478999999999999999 999999999999999876554
No 22
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=67.11 E-value=11 Score=35.25 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=45.6
Q ss_pred cEEEEecCCCCCCceEEEEEcCCCceeeeEEEEEEeCCCCCcCCCcccccCCCcccceEEEEeecCCCccEEEEeccCCC
Q psy1431 942 RYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSP 1021 (1043)
Q Consensus 942 qy~l~l~~~~~~~~~l~i~l~~~~~~~ig~~v~~~~~~~~~~~~~~~~~~sg~yr~g~~~~~~~~L~~G~Y~IVPSTf~p 1021 (1043)
-|.|.|.++.. |-|.|.......+...||........ ...+ -+.|-....-..++||+|-|-.+-|
T Consensus 42 ~y~f~v~~~g~----v~I~l~~~~~~~~~w~ly~~~dl~ny-------v~y~-~~~gn~~~~~~~~~pGkYYl~Vy~y-- 107 (119)
T 1nqj_A 42 YYSFEVKEEGE----VNIELDKKDEFGVTWTLHPESNINDR-------ITYG-QVDGNKVSNKVKLRPGKYYLLVYKY-- 107 (119)
T ss_dssp EEEEEESSCEE----EEEEEEESSSSEEEEEEEECC----C-------CEEC-EEETTEEEEEEEECSEEEEEEEEEE--
T ss_pred EEEEECCCCCe----EEEEEEeCCCCCEEEEEEccCCCccc-------eEEe-ecCCCcEEEEEEcCCcEEEEEEEEe--
Confidence 48899998886 66777544443455555543221111 1222 2333333333457899998888877
Q ss_pred CCccCeEEEEE
Q psy1431 1022 QQEGPFFLELK 1032 (1043)
Q Consensus 1022 ~~~g~F~L~V~ 1032 (1043)
+-.|.|.|.|.
T Consensus 108 ~~~g~Y~l~v~ 118 (119)
T 1nqj_A 108 SGSGNYELRVN 118 (119)
T ss_dssp ESCEEEEEEEE
T ss_pred CCCceEEEEEe
Confidence 67899999985
No 23
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=57.28 E-value=2.2 Score=45.19 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
.++.|..++.+|...|..|++.+|+.+|++|++.+...++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk 58 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK 58 (257)
T ss_dssp ----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998866554
No 24
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=55.07 E-value=4.1 Score=47.04 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=36.5
Q ss_pred ccccccCceEEEEEEecCCCCccEEEEeccccCccccceEEEEeecCCccccc
Q psy1431 759 DGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK 811 (1043)
Q Consensus 759 ~g~~~ns~~~l~r~~l~p~~~~~YtlVpst~~~~~~~~F~LriyS~~~~~~~~ 811 (1043)
+..|+|.|++ +.++| |.| |+++++.++++|+||+|+.+.++..+
T Consensus 246 s~~y~n~ReV---~~L~p---G~y---PSt~Ep~~EgdflLRvfs~k~iD~de 289 (450)
T 3sg6_A 246 PEGYIQERTI---FFKDD---GNY---KTRAEVKFEGDTLVNRIELKGIDFKE 289 (450)
T ss_dssp TTCEEEEEEE---EETTS---CEE---EEEEEEEEETTEEEEEEEEEEESCCT
T ss_pred Cccceeecce---eccCC---CCC---CcccchhhccchhhheeccccCCccc
Confidence 4568888888 56665 888 99999999999999999988776644
No 25
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=41.21 E-value=40 Score=31.35 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=46.7
Q ss_pred cEEEEecCCCCCCceEEEEEcCCCceeeeEEEEEEeCCCCCcCCCcccccCCCcccceEEEEeecC-CCccEEEEeccCC
Q psy1431 942 RYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNL-PSGTYEIMPSTFS 1020 (1043)
Q Consensus 942 qy~l~l~~~~~~~~~l~i~l~~~~~~~ig~~v~~~~~~~~~~~~~~~~~~sg~yr~g~~~~~~~~L-~~G~Y~IVPSTf~ 1020 (1043)
-|.|.|+++++ |-|.+.......+...|+ ...... ...+. ..|-.+.....+ .||+|-|...-|.
T Consensus 40 ~y~F~V~~~g~----v~I~l~~~~~~~~~w~ly--~~~~ny-------v~y~~-~~gn~~~~~~~~~~pGkYYl~Vy~y~ 105 (121)
T 3jqw_A 40 YFYFDVITPGE----VKIDINKLGYGGATWVVY--DENNNA-------VSYAT-DDGQNLSGKFKADKPGRYYIHLYMFN 105 (121)
T ss_dssp EEEEEESSCEE----EEEEEEECSSSEEEEEEE--CTTSCE-------EEECE-ECSSEEEEEEEECSCEEEEEEEEEEE
T ss_pred EEEEEeCCCCe----EEEEEEecCCCcEEEEEE--eCCCCe-------EEEec-cCCCEEEEEEEeCCCeeEEEEEEEec
Confidence 58999999986 556665433333444444 322211 12222 333333333357 9999988888886
Q ss_pred CCCccCeEEEEEeC
Q psy1431 1021 PQQEGPFFLELKSS 1034 (1043)
Q Consensus 1021 p~~~g~F~L~V~S~ 1034 (1043)
- ..|.|.|+|.-+
T Consensus 106 ~-~~g~Y~l~i~g~ 118 (121)
T 3jqw_A 106 G-SYMPYRINIEGS 118 (121)
T ss_dssp C-SCEEEEEEEEEC
T ss_pred C-CCccEEEEEEee
Confidence 4 479999999754
No 26
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=26.76 E-value=90 Score=28.99 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhcccccCCCccceeccCCCCCcHhhhhhh
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSGRDTYTEEEKAVL 315 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~~~~~~~l~~~~~~~~t~~E~~il 315 (1043)
.+++-+.-+++|++.|.=|+..+|.+-|...+..++...+... ....+|+.++++|
T Consensus 15 ~v~kW~~sl~Ka~dfDsWGQvvEA~deY~~La~~lkk~~~s~~-------~~~~fte~qkk~i 70 (128)
T 1ug7_A 15 LLQRWGASLRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQH-------NNSEFTEEQKKTI 70 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTCSS-------SCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhccc-------ccccccHHHHHHH
Confidence 3456777889999999999999999999999888765543221 1235666555443
No 27
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=24.26 E-value=16 Score=41.98 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHhhhhcCchHHHHHHHHHHHHhhccccc
Q psy1431 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLH 292 (1043)
Q Consensus 253 ~l~~~~~l~~~a~~~~~~~~~~~a~~~y~~~~e~~~~~l~ 292 (1043)
.+++|..++.+|...|..|++.+|+.+|.+|++.+...++
T Consensus 7 ~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k 46 (444)
T 2zan_A 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK 46 (444)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999999865543
No 28
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=24.09 E-value=52 Score=35.35 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=32.5
Q ss_pred ccCceeeEeecc-ceEEEEeeCCCCcCccCCCCCCCCCCCCCHHHHHHcCCCCCCCCCCCCceEEEecccccc
Q psy1431 562 VDTMQSSVSWSQ-GLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILR 633 (1043)
Q Consensus 562 v~~HaYaV~~v~-~~rll~LrNPWg~~eW~G~wsd~s~~~W~~~~~~~l~~~~~~~~~~~dG~FWm~~edf~~ 633 (1043)
..+||-.|...+ +.....+||-||. .| .++|-|||+++.|.+
T Consensus 234 ~~~Hav~iVGy~~~~~ywivkNSWG~-------------~W-----------------G~~Gy~~i~~~~~~~ 276 (291)
T 3ois_A 234 EGGHAVLCVGYDDEIRHFRIRNSWGN-------------NV-----------------GEDGYFWMPYEYISN 276 (291)
T ss_dssp EEEEEEEEEEEETTTTEEEEECSBCT-------------TS-----------------TBTTEEEEEHHHHTC
T ss_pred cCCeEEEEEEEeCCCCEEEEEeCCCC-------------CC-----------------CCCcEEEEEHHHhcC
Confidence 457888877764 5678999999993 34 367999999998874
No 29
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=22.01 E-value=3.7e+02 Score=24.71 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=23.1
Q ss_pred EEEEEEecCCCCccEEEEeccccCccccceEEEE
Q psy1431 768 YLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRA 801 (1043)
Q Consensus 768 ~l~r~~l~p~~~~~YtlVpst~~~~~~~~F~Lri 801 (1043)
...++.+.| |+|.|-+..+ +..|.|.|.|
T Consensus 89 ~~~~~~~~p---GkYYl~Vy~y--~~~g~Y~l~v 117 (119)
T 1nqj_A 89 VSNKVKLRP---GKYYLLVYKY--SGSGNYELRV 117 (119)
T ss_dssp EEEEEEECS---EEEEEEEEEE--ESCEEEEEEE
T ss_pred EEEEEEcCC---cEEEEEEEEe--CCCceEEEEE
Confidence 445677765 9999999888 5789999987
Done!