RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1431
(1043 letters)
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family.
Calpain-like thiol protease family (peptidase family
C2). Calcium activated neutral protease (large subunit).
Length = 318
Score = 203 bits (519), Expect = 2e-58
Identities = 85/344 (24%), Positives = 131/344 (38%), Gaps = 52/344 (15%)
Query: 326 FVPFMNVDLAEKFQYAVP-FTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDY 384
+ + P F G L S +Q R FV W RP E P + G
Sbjct: 1 YEALRQYCKESGTLFEDPLFPANNGSLFFSQRQ-RKFVVWKRPHEIFENPPFIVGG-ASR 58
Query: 385 FSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLN 444
I Q ++ DC +A+LA L E+ + + P ++ N G + +
Sbjct: 59 TDICQGVLGDCWLLAALASLTLREK------LLDRVIPHDQEFSE--NYAGIFHFRFWRF 110
Query: 445 GITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALN 504
G V+IDD+LP +L+ +S ++NE W ++LEKAY K+ G Y+ ST AL
Sbjct: 111 GKWVDVVIDDRLPTYN-GELVFMHSNSRNEFWSALLEKAYAKLNGCYEALKGGSTTEALE 169
Query: 505 GLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDT 564
L G A +I +A ++FE+LF ++ + +
Sbjct: 170 DLTGGVAESIDLKEASK-DPDNLFEDLFKAFERGSL---------MGCSIGAGT---AVE 216
Query: 565 MQSSVSWS-----------------QGLRLLQLKNPWSNVRWRGNYSELDRLHWT---PE 604
+ + LL+L+NPW V W G +S+ W
Sbjct: 217 EEEQKDCGLVKGHAYSVTDVREVQGRRQELLRLRNPWGQVEWNGPWSDDSPE-WRSVSAS 275
Query: 605 LKRALNFDPNSASMFDNGIFWIDYESILR-FYDVFYMNWNPGLF 647
K+ L + D+G FW+ +E LR F V N NP
Sbjct: 276 EKKNLGLTFD-----DDGEFWMSFEDFLRHFDKVEICNLNPDSL 314
Score = 150 bits (380), Expect = 7e-40
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 39 FVPFMNVDLAEKFQYAVP-FTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDY 97
+ + P F G L S +Q R FV W RP E P + G
Sbjct: 1 YEALRQYCKESGTLFEDPLFPANNGSLFFSQRQ-RKFVVWKRPHEIFENPPFIVGG-ASR 58
Query: 98 FSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLN 157
I Q ++ DC +A+LA L E+ + + P ++ N G + +
Sbjct: 59 TDICQGVLGDCWLLAALASLTLREK------LLDRVIPHDQEFSE--NYAGIFHFRFWRF 110
Query: 158 GITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNS 211
G V+IDD+LP +L+ +S ++NE W ++LEKAY K+ G Y+ S
Sbjct: 111 GKWVDVVIDDRLPTYN-GELVFMHSNSRNEFWSALLEKAYAKLNGCYEALKGGS 163
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent
cytoplasmic cysteine proteinases, papain-like. Functions
in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Length = 315
Score = 192 bits (491), Expect = 1e-54
Identities = 88/342 (25%), Positives = 134/342 (39%), Gaps = 43/342 (12%)
Query: 317 TTSKINNLNFVPFMNVDL-AEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPK 375
T +I L+ V F + D + D LS Q + + W RPSE ++
Sbjct: 1 TLLQICLLSGVLFEDPDFPPN---DSSLGFDDS----LSNGQPKKVIEWKRPSEIFADDG 53
Query: 376 MVAGEFV----DYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 431
+ Q I+ DC F+A+LA A L+ +I P ++
Sbjct: 54 NSNPRLFVNGASPSDVCQGILGDCWFLAALAALAERPE-----LLKRVIPP---DQSFEE 105
Query: 432 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 491
N G Y + NG +V+IDD+LP + LL +S+++NELWV++LEKAY K+ G Y
Sbjct: 106 NYAGIYHFRFWKNGEWVEVVIDDRLPTSN-GGLLFMHSRDRNELWVALLEKAYAKLHGSY 164
Query: 492 DFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREIC 551
+ +T AL L G I A + + L C
Sbjct: 165 EALVGGNTAEALEDLTGGPTERIDLKSADASSGDNDLFALLLSFLQG-------GSLIGC 217
Query: 552 LRMKKRERSRVDT-----------MQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLH 600
+ E + +GLRLL+L+NPW W G +S+
Sbjct: 218 STGSRSEEEARTANGLVKGHAYSVLDVREVQEEGLRLLRLRNPWGVGEWWGGWSDDSSEW 277
Query: 601 WTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNW 642
W + +R S D+G FW+ +E LR +D Y+
Sbjct: 278 WVIDAER----KKLLLSGKDDGEFWMSFEDFLRNFDGLYVCN 315
Score = 144 bits (364), Expect = 9e-38
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 22/188 (11%)
Query: 30 TTSKINNLNFVPFMNVDL-AEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPK 88
T +I L+ V F + D + D LS Q + + W RPSE ++
Sbjct: 1 TLLQICLLSGVLFEDPDFPPN---DSSLGFDDS----LSNGQPKKVIEWKRPSEIFADDG 53
Query: 89 MVAGEFV----DYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 144
+ Q I+ DC F+A+LA A L+ +I P ++
Sbjct: 54 NSNPRLFVNGASPSDVCQGILGDCWFLAALAALAERPE-----LLKRVIPP---DQSFEE 105
Query: 145 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 204
N G Y + NG +V+IDD+LP + LL +S+++NELWV++LEKAY K+ G Y
Sbjct: 106 NYAGIYHFRFWKNGEWVEVVIDDRLPTSN-GGLLFMHSRDRNELWVALLEKAYAKLHGSY 164
Query: 205 DF-PGSNS 211
+ G N+
Sbjct: 165 EALVGGNT 172
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 100 bits (252), Expect = 3e-23
Identities = 69/289 (23%), Positives = 111/289 (38%), Gaps = 36/289 (12%)
Query: 362 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 421
+ W RP E C P+ + G I Q + DC +A++A L E R+V
Sbjct: 29 IEWKRPHEICENPQFIIGG-ATRTDICQGALGDCWLLAAIASLTLNEELL-FRVVP---- 82
Query: 422 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 481
++ N G + + G V++DD+LP +L+ +S +NE W ++LE
Sbjct: 83 ---HDQSFQENYAGIFHFQFWQYGEWVDVVVDDRLPTKD-GELVFVHSAERNEFWSALLE 138
Query: 482 KAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHS--RA 539
KAY K+ G Y+ ST A+ G A L Q NLF +
Sbjct: 139 KAYAKLHGCYEALSGGSTTEAMEDFTGGVAEWYE------LKQAPSDLNLFKIIAKALER 192
Query: 540 MFWLPWCKREICL-----RMKKRERSR----VDTMQSSVSWSQGLRLLQLKNPWSNVRWR 590
+ R K V ++ + +L++L+NPW V W
Sbjct: 193 GSLMGCSIDITSPVDMEARTFKGLVKGHAYSVTGVKEVNYRGEKQKLIRLRNPWGQVEWT 252
Query: 591 GNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYESILRFYD 636
G +S+ W P+ + L ++G FW+ +E LR +
Sbjct: 253 GAWSD-GSPEWRFIDPDERARLQL-----QFEEDGEFWMSFEDFLRHFS 295
Score = 74.4 bits (183), Expect = 3e-14
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 75 VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIY 134
+ W RP E C P+ + G I Q + DC +A++A L E R+V
Sbjct: 29 IEWKRPHEICENPQFIIGG-ATRTDICQGALGDCWLLAAIASLTLNEELL-FRVVP---- 82
Query: 135 PRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILE 194
++ N G + + G V++DD+LP +L+ +S +NE W ++LE
Sbjct: 83 ---HDQSFQENYAGIFHFQFWQYGEWVDVVVDDRLPTKD-GELVFVHSAERNEFWSALLE 138
Query: 195 KAYMKVMGGYD 205
KAY K+ G Y+
Sbjct: 139 KAYAKLHGCYE 149
>gnl|CDD|214786 smart00720, calpain_III, calpain_III domain.
Length = 143
Score = 91.3 bits (227), Expect = 2e-21
Identities = 47/138 (34%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 918 ISGEW-KGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFL----------KGPKQ 966
+ G W +G TAGGC NYPAT+ NP++++TL+ D T+L+ L KG
Sbjct: 6 VQGSWTRGQTAGGCRNYPATFWTNPQFRITLEEPDDDDCTVLIALMQKNRRRLRRKGADF 65
Query: 967 YSLGVKISCVRLDDETATAPFKT----KDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQ 1022
++G + V + F + SG Y +G E LP G Y I+PSTF P
Sbjct: 66 LTIGFAVYKVPKELHLRRDFFLSNAPRASSGDYINGREVSERFRLPPGEYVIVPSTFEPN 125
Query: 1023 QEGPFFLELKSSCSITIS 1040
QEG F L + S ++
Sbjct: 126 QEGDFLLRVFSEGPFKLT 143
>gnl|CDD|216279 pfam01067, Calpain_III, Calpain large subunit, domain III. The
function of the domain III and I are currently unknown.
Domain II is a cysteine protease and domain IV is a
calcium binding domain. Calpains are believed to
participate in intracellular signaling pathways mediated
by calcium ions.
Length = 142
Score = 88.5 bits (220), Expect = 2e-20
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 918 ISGEW-KGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFL----------KGPKQ 966
G W +G TAGGC N+P T+ NP+Y+++L D ++LV L +G
Sbjct: 7 YEGSWVRGSTAGGCRNFPDTFWTNPQYRLSLTEPDDDDCSVLVALMQKNRRKKRKEGADN 66
Query: 967 YSLGVKISCVRLDDETATAPFKTK----DSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQ 1022
++G I V E F S Y + E LP GTY I+PSTF P
Sbjct: 67 LTIGFAIYKVDPQKELPRKFFSQNRSIARSSTYINLREVTERFRLPPGTYVIVPSTFEPG 126
Query: 1023 QEGPFFL 1029
QEG F L
Sbjct: 127 QEGEFLL 133
>gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III. Calpains are
calcium-activated cytoplasmic cysteine proteinases,
participate in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Catalytic domain and the two calmodulin-like domains are
separated by C2-like domain III. Domain III plays an
important role in calcium-induced activation of calpain
involving electrostatic interactions with subdomain II.
Proposed to mediate calpain's interaction with
phospholipids and translocation to cytoplasmic/nuclear
membranes. CD includes subdomain III of typical and
atypical calpains.
Length = 150
Score = 80.8 bits (200), Expect = 9e-18
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 918 ISGEW-KGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN--TLLVFL----------KGP 964
+GEW +G TAGGC N P T+ NP++++ + + T+L+ L KG
Sbjct: 8 FNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPDDDEGKCTVLIALMQKNRRHLRKKGL 67
Query: 965 KQYSLGVKISCVRLDDETATAP-FKTKDSGAYRSGF-----VAVEMDNLPSGTYEIMPST 1018
++G + V ++ F K A S F V++ LP G Y I+PST
Sbjct: 68 DLLTIGFHVYKVPGENRHLRRDFFLHKAPRARSSTFINTREVSLRF-RLPPGEYVIVPST 126
Query: 1019 FSPQQEGPFFLELKSSCSITISRI 1042
F P +EG F L + S SI S +
Sbjct: 127 FEPGEEGEFLLRVFSEKSIKSSEL 150
>gnl|CDD|239143 cd02680, MIT_calpain7_2, MIT: domain contained within Microtubule
Interacting and Trafficking molecules. This sub-family
of MIT domains is found in the nuclear thiol protease
PalBH. The molecular function of the MIT domain is
unclear.
Length = 75
Score = 42.3 bits (99), Expect = 4e-05
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 255 EKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLK 300
E+ HFL++QA D DE G + A++LY +++E+ T + Q L+
Sbjct: 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQ 49
>gnl|CDD|146707 pfam04212, MIT, MIT (microtubule interacting and transport) domain.
The MIT domain forms an asymmetric three-helix bundle
and binds ESCRT-III (endosomal sorting complexes
required for transport) substrates.
Length = 69
Score = 36.4 bits (85), Expect = 0.004
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 255 EKCHFLLSQALDADEAGLKDTAVQLYMQSIE 285
EK L+ +A++ADEAG + A++LY ++IE
Sbjct: 3 EKALELVKKAVEADEAGNYEEALELYKEAIE 33
>gnl|CDD|239142 cd02679, MIT_spastin, MIT: domain contained within Microtubule
Interacting and Trafficking molecules. This MIT domain
sub-family is found in the AAA protein spastin, a
probable ATPase involved in the assembly or function of
nuclear protein complexes; spastins might also be
involved in microtubule dynamics. The molecular function
of the MIT domain is unclear.
Length = 79
Score = 35.3 bits (82), Expect = 0.013
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 261 LSQALDADEAGLKDTAVQLYMQSIEM 286
+S+AL ADE G K+ A+ Y + +
Sbjct: 12 ISKALRADEWGDKEQALAHYRKGLRE 37
>gnl|CDD|197854 smart00745, MIT, Microtubule Interacting and Trafficking molecule
domain.
Length = 77
Score = 34.6 bits (80), Expect = 0.025
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 255 EKCHFLLSQALDADEAGLKDTAVQLYMQSIEM 286
K L+S+AL ADEAG + A++LY ++IE
Sbjct: 6 SKAKELISKALKADEAGNYEEALELYKKAIEY 37
>gnl|CDD|239121 cd02656, MIT, MIT: domain contained within Microtubule Interacting
and Trafficking molecules. The MIT domain is found in
sorting nexins, the nuclear thiol protease PalBH, the
AAA protein spastin and archaebacterial proteins with
similar domain architecture, vacuolar sorting proteins
and others. The molecular function of the MIT domain is
unclear.
Length = 75
Score = 31.1 bits (71), Expect = 0.41
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 253 LSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEM 286
L ++ L+ QA+ DE G + A++LY ++++
Sbjct: 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDY 35
>gnl|CDD|239141 cd02678, MIT_VPS4, MIT: domain contained within Microtubule
Interacting and Trafficking molecules. This sub-family
of MIT domains is found in intracellular protein
transport proteins of the AAA-ATPase family. The
molecular function of the MIT domain is unclear.
Length = 75
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 260 LLSQALDADEAGLKDTAVQLYMQSIE 285
L+ +A++ D AG + A++LY ++E
Sbjct: 9 LVKKAIEEDNAGNYEEALRLYQHALE 34
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 601
Score = 32.2 bits (74), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 3 TLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKIN 35
+ GS QHL D +EEEK V T +I+
Sbjct: 485 LTNEGSVQHL-----DFLSEEEKDVFKTAFEID 512
Score = 32.2 bits (74), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 290 TLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKIN 322
+ GS QHL D +EEEK V T +I+
Sbjct: 485 LTNEGSVQHL-----DFLSEEEKDVFKTAFEID 512
>gnl|CDD|188230 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha
chain. This model represents a small clade of
ribonucleoside-diphosphate reductase, alpha chains which
are sufficiently divergent from the usual Class I RNR
alpha chains (NrdE or NrdA, TIGR02506) as to warrant
their own model. The genes from Thermus thermophilus,
Dichelobacter and Salinibacter are adjacent to the usual
RNR beta chain [Purines, pyrimidines, nucleosides, and
nucleotides, 2'-Deoxyribonucleotide metabolism].
Length = 548
Score = 31.4 bits (71), Expect = 2.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 3 TLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFV 40
T H GS QHL D T+EEK+V T +I+ + +
Sbjct: 447 TYHNGSVQHL-----DFLTDEEKSVFKTFYEISQMAII 479
Score = 31.4 bits (71), Expect = 2.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 290 TLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFV 327
T H GS QHL D T+EEK+V T +I+ + +
Sbjct: 447 TYHNGSVQHL-----DFLTDEEKSVFKTFYEISQMAII 479
>gnl|CDD|172967 PRK14495, PRK14495, putative molybdopterin-guanine dinucleotide
biosynthesis protein MobB/unknown domain fusion protein;
Provisional.
Length = 452
Score = 31.2 bits (70), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 968 SLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAV 1002
+ + + + LDD A A F DSG RSGF V
Sbjct: 136 QMALPVPVLDLDDTEAVADFLLTDSGLVRSGFDTV 170
>gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional.
Length = 387
Score = 29.5 bits (67), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 901 CPFRLEKIENP--YQFKEEISGEWKG 924
CP RL++I+ P F E+++ E+ G
Sbjct: 53 CPGRLDQIKKPPIADFHEDLA-EFLG 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,478,852
Number of extensions: 5269201
Number of successful extensions: 3530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3499
Number of HSP's successfully gapped: 27
Length of query: 1043
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 936
Effective length of database: 6,191,724
Effective search space: 5795453664
Effective search space used: 5795453664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.4 bits)