RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1431
(1043 letters)
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 204 bits (519), Expect = 3e-55
Identities = 90/524 (17%), Positives = 171/524 (32%), Gaps = 58/524 (11%)
Query: 342 VPFTDKEGPLILS---------PKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIV 392
F D P + S K + W RP+E C++P+ + G I Q +
Sbjct: 44 ALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIGG-ATRTDICQGAL 102
Query: 393 SDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVII 452
D +A++A L E + + P +++ + N G + + G +V++
Sbjct: 103 GDSWLLAAIASLTLNEEILAR------VVPLDQSFQE--NYAGIFHFQFWQYGEWVEVVV 154
Query: 453 DDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAAR 512
DD+LP +LL +S +E W ++LEKAY K+ G Y+ +T G A
Sbjct: 155 DDRLPTKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAE 213
Query: 513 AIRPNDARILTQTSVFENLFTRLHSRAMF-----WLPWCKREICLRMKKRE--RSRVDTM 565
++F+ + L ++ E K + V
Sbjct: 214 WYELRKP----PPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269
Query: 566 QSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFW 625
+ S +L++++NPW V W G +++ T + + N ++G FW
Sbjct: 270 EEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQ----EDGEFW 325
Query: 626 IDYESILRFYD-VFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYV 684
+ + LR Y + N P + +LT + TA +
Sbjct: 326 MSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMD---GNWRRGSTAGGCRNYPNTFW 382
Query: 685 TFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLT-RHITQLEDFKQNREYITVLVYKN 743
+I+ D F + L +H + ++ I +Y+
Sbjct: 383 MNPQYLIKLEEED------EDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEV 436
Query: 744 EG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMH 793
+ ++ IN L + L Y LV S +E
Sbjct: 437 PEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE---YVLVPSTFEPHK 493
Query: 794 TIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFT 837
+ +R ++ + +++ + E F
Sbjct: 494 NGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIGDGFRRL 537
Score = 122 bits (308), Expect = 7e-29
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 20/185 (10%)
Query: 55 VPFTDKEGPLILS---------PKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIV 105
F D P + S K + W RP+E C++P+ + G I Q +
Sbjct: 44 ALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIGG-ATRTDICQGAL 102
Query: 106 SDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVII 165
D +A++A L E + + P +++ + N G + + G +V++
Sbjct: 103 GDSWLLAAIASLTLNEEILAR------VVPLDQSFQE--NYAGIFHFQFWQYGEWVEVVV 154
Query: 166 DDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYD-FPGSNSPGIRRSFTTVDCL 224
DD+LP +LL +S +E W ++LEKAY K+ G Y+ G + FT
Sbjct: 155 DDRLPTKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAE 213
Query: 225 RIEFN 229
E
Sbjct: 214 WYELR 218
Score = 49.4 bits (117), Expect = 6e-06
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 920 GEW-KGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN------TLLVFL----------K 962
G W +G TAGGC NYP T+ NP+Y + L+ D T LV L
Sbjct: 363 GNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKM 422
Query: 963 GPKQYSLGVKI------SCVRLDDETATAPFKTKDSGAYRSGF-----VAVEMDNLPSGT 1011
G +++G I + + + F T + F V LP G
Sbjct: 423 GEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRF-KLPPGE 481
Query: 1012 YEIMPSTFSPQQEGPFFLELKSSCSIT 1038
Y ++PSTF P + G F + + S
Sbjct: 482 YVLVPSTFEPHKNGDFCIRVFSEKKAD 508
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine
proteinases, like, EF-hand, structural genomics,
structural genomics CON SGC; HET: AR7; 2.20A {Homo
sapiens}
Length = 326
Score = 182 bits (463), Expect = 3e-51
Identities = 73/342 (21%), Positives = 123/342 (35%), Gaps = 41/342 (11%)
Query: 325 NFVPFMNVDLAEKFQYA----VPFTDKEGPLILS---------PKQKRDFVAWVRPSEFC 371
N + ++ D Q V F D E P S + + W RP+E C
Sbjct: 3 NALKYLGQDFKTLRQQCLDSGVLFKDPEFPACPSALGYKDLGPGSPQTQGIIWKRPTELC 62
Query: 372 SEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 431
P+ + G I Q + DC +A++A L E + + PR+++ + Y
Sbjct: 63 PSPQFIVGG-ATRTDICQGGLGDCWLLAAIASLTLNEELLYR------VVPRDQDFQENY 115
Query: 432 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 491
G + + G +V+IDD+LP QLL +S+ NE W ++LEKAY K+ G Y
Sbjct: 116 A--GIFHFQFWQYGEWVEVVIDDRLPTKN-GQLLFLHSEQGNEFWSALLEKAYAKLNGCY 172
Query: 492 DFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREIC 551
+ ST+ TG + + + +
Sbjct: 173 EALAGGSTVEGFEDF-TGGI----SEFYDLKKPPANLYQIIRKALCAGSLLGCSIDVYSA 227
Query: 552 LRMKKRERS--------RVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTP 603
+ V ++ +L++L+NPW V W G +S+ D W
Sbjct: 228 AEAEAITSQKLVKSHAYSVTGVEEVNFQGHPEKLIRLRNPWGEVEWSGAWSD-DAPEWNH 286
Query: 604 ELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYM-NWNP 644
R ++G FW+ +R + + N +P
Sbjct: 287 IDPRRKEELDKK---VEDGEFWMSLSDFVRQFSRLEICNLSP 325
Score = 121 bits (304), Expect = 4e-30
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 38 NFVPFMNVDLAEKFQYA----VPFTDKEGPLILS---------PKQKRDFVAWVRPSEFC 84
N + ++ D Q V F D E P S + + W RP+E C
Sbjct: 3 NALKYLGQDFKTLRQQCLDSGVLFKDPEFPACPSALGYKDLGPGSPQTQGIIWKRPTELC 62
Query: 85 SEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 144
P+ + G I Q + DC +A++A L E + + PR+++ + Y
Sbjct: 63 PSPQFIVGG-ATRTDICQGGLGDCWLLAAIASLTLNEELLYR------VVPRDQDFQENY 115
Query: 145 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 204
G + + G +V+IDD+LP QLL +S+ NE W ++LEKAY K+ G Y
Sbjct: 116 A--GIFHFQFWQYGEWVEVVIDDRLPTKN-GQLLFLHSEQGNEFWSALLEKAYAKLNGCY 172
Query: 205 DFPGSNSPG 213
+ S
Sbjct: 173 EALAGGSTV 181
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 179 bits (455), Expect = 2e-46
Identities = 94/508 (18%), Positives = 176/508 (34%), Gaps = 55/508 (10%)
Query: 343 PFTDKEGPLILSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASL 401
P + G L P + + + W RP+E S P+ + I Q + D +A++
Sbjct: 53 PVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVDG-ATRTDICQGALGDSWLLAAI 111
Query: 402 AVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARF 461
A L E + P ++ + Y G + +L G V++DD LP
Sbjct: 112 ASLTLNETIL------HRVVPYGQSFQEGYA--GIFHFQLWQFGEWVDVVVDDLLPTKD- 162
Query: 462 NQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGA-ARAIRPNDAR 520
+L+ +S NE W ++LEKAY KV G Y+ T A TG A
Sbjct: 163 GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDF-TGGVTEWYDLQKA- 220
Query: 521 ILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVS-------WSQ 573
+ +++ + L ++ +I ++ V SV+ Q
Sbjct: 221 ---PSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQGQ 277
Query: 574 GLRLLQLKNPWSNVRWRGNYSELD--RLHWTPELKRALNFDPNSASMFDNGIFWIDYESI 631
+ L++++NPW V W+G +S+ P + L ++G FW+ +
Sbjct: 278 RVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK------MEDGEFWMSFRDF 331
Query: 632 LRFYD-VFYMNWNPGLFSHTFCVHQELTFE----KKNGNSTNCVKTAKQLSIVVFDYVTF 686
+R + + N P + TF ++ + C
Sbjct: 332 IREFTKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYP--------ATFWV 383
Query: 687 KP-VIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEG 745
P IR +D + S L+ +H + F ++ E I VY+
Sbjct: 384 NPQFKIRLEEVDDADDYDSRESGCSF---LLALMQKHRRRERRFGRDMETIGFAVYQVPR 440
Query: 746 KRVYYPYDPPPYL---DGVRINSPHYLCKIILNENSS---RKYTLVVSQYEKMHTIYYTL 799
+ P + R S H++ ++ +Y +V S +E + L
Sbjct: 441 ELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDFLL 500
Query: 800 RAYATCPFRLEKIENPYQFKEEVRIEIW 827
R ++ +++++ Q +
Sbjct: 501 RFFSEKKAGTQELDDQIQANLPDEKVLS 528
Score = 107 bits (267), Expect = 1e-23
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 11/151 (7%)
Query: 56 PFTDKEGPLILSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASL 114
P + G L P + + + W RP+E S P+ + I Q + D +A++
Sbjct: 53 PVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVDG-ATRTDICQGALGDSWLLAAI 111
Query: 115 AVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARF 174
A L E + P ++ + Y G + +L G V++DD LP
Sbjct: 112 ASLTLNETIL------HRVVPYGQSFQEGYA--GIFHFQLWQFGEWVDVVVDDLLPTKD- 162
Query: 175 NQLLCSYSQNKNELWVSILEKAYMKVMGGYD 205
+L+ +S NE W ++LEKAY KV G Y+
Sbjct: 163 GKLVFVHSAQGNEFWSALLEKAYAKVNGSYE 193
Score = 47.1 bits (111), Expect = 3e-05
Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 28/154 (18%)
Query: 918 ISGEW-KGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN--------TLLVFL------- 961
G W +G TAGGC NYPAT+ NP++++ L+ D+ + L+ L
Sbjct: 361 YEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRR 420
Query: 962 ---KGPKQYSLGVKISCVRLDDETATAPFKT---------KDSGAYRSGFVAVEMDNLPS 1009
G ++G + V + K S + + LP
Sbjct: 421 ERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPP 480
Query: 1010 GTYEIMPSTFSPQQEGPFFLELKSSCSITISRIR 1043
G Y ++PSTF P +EG F L S +
Sbjct: 481 GEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELD 514
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol
protease, structural genomics consortium, SGC,
hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB:
2p0r_A*
Length = 339
Score = 167 bits (424), Expect = 7e-46
Identities = 70/329 (21%), Positives = 127/329 (38%), Gaps = 41/329 (12%)
Query: 339 QYAVPFTDKEGPL----ILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSD 394
Q F D + P + ++ + W RP E P+ + G I Q + D
Sbjct: 30 QRGTLFEDADFPASNSSLFYSERPQIPFVWKRPGEIVKNPEFILGG-ATRTDICQGELGD 88
Query: 395 CSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDD 454
C +A++A L ++ + + P++++ P Y G + + + V+IDD
Sbjct: 89 CWLLAAIASLTLNQKALAR------VIPQDQSFGPGYA--GIFHFQFWQHSEWLDVVIDD 140
Query: 455 QLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAI 514
+LP R ++L+ +S + NE W ++LEKAY K+ G Y+ S + A+ G A
Sbjct: 141 RLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETF 199
Query: 515 RPNDARILTQTSVFENLFTRL---HSRAMFWLPWCKREICLRMKKRERSR--------VD 563
+ +A EN + L R + + R V
Sbjct: 200 QTKEAP--------ENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVT 251
Query: 564 TMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLH--WTPELKRALNFDPNSASMFDN 621
+ Q + L++++NPW V W G++S+ P ++ L D+
Sbjct: 252 GIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTA-----LDD 306
Query: 622 GIFWIDYESILRFYDVFYM-NWNPGLFSH 649
G FW+ ++ +D + N P
Sbjct: 307 GEFWMAFKDFKAHFDKVEICNLTPDALEE 335
Score = 112 bits (282), Expect = 3e-27
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 52 QYAVPFTDKEGPL----ILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSD 107
Q F D + P + ++ + W RP E P+ + G I Q + D
Sbjct: 30 QRGTLFEDADFPASNSSLFYSERPQIPFVWKRPGEIVKNPEFILGG-ATRTDICQGELGD 88
Query: 108 CSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDD 167
C +A++A L ++ + + P++++ P Y G + + + V+IDD
Sbjct: 89 CWLLAAIASLTLNQKALAR------VIPQDQSFGPGYA--GIFHFQFWQHSEWLDVVIDD 140
Query: 168 QLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPG 213
+LP R ++L+ +S + NE W ++LEKAY K+ G Y+ S
Sbjct: 141 RLPTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAI 185
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor,
alpha-ketoamide, hydrolase, thiol protease; HET: K2Z;
1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A*
2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A
2ary_A 1zcm_A* 1mdw_A
Length = 339
Score = 158 bits (401), Expect = 8e-43
Identities = 71/327 (21%), Positives = 123/327 (37%), Gaps = 39/327 (11%)
Query: 342 VPFTDKEGP--------LILSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIV 392
V F D P L P + + + W RP+E S P+ + + I Q +
Sbjct: 29 VLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGAL 87
Query: 393 SDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVII 452
DC +A++A L E + + P ++ + Y G + +L G V++
Sbjct: 88 GDCWLLAAIASLTLNETILHR------VVPYGQSFQEGY--AGIFHFQLWQFGEWVDVVV 139
Query: 453 DDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAAR 512
DD LP +L+ +S NE W ++LEKAY KV G Y+ T A G
Sbjct: 140 DDLLPTKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTE 198
Query: 513 AIRPNDARILTQTSVFENLFTRLHSRAMF---WLPWCKREICLRMKK----RERSRVDTM 565
A + +++ + L ++ R++ K V
Sbjct: 199 WYDLQKAP----SDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDA 254
Query: 566 QSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWT--PELKRALNFDPNSASMFDNGI 623
+ Q + L++++NPW V W+G +S+ P + L ++G
Sbjct: 255 KQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLR------VKMEDGE 308
Query: 624 FWIDYESILRFYDVFYM-NWNPGLFSH 649
FW+ + +R + + N P L H
Sbjct: 309 FWMSFRDFIREFTKLEICNLTPDLEHH 335
Score = 108 bits (270), Expect = 1e-25
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 20/186 (10%)
Query: 55 VPFTDKEGP--------LILSPKQKRDF-VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIV 105
V F D P L P + + + W RP+E S P+ + + I Q +
Sbjct: 29 VLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIV-DGATRTDICQGAL 87
Query: 106 SDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVII 165
DC +A++A L E + + P ++ + Y G + +L G V++
Sbjct: 88 GDCWLLAAIASLTLNETILHR------VVPYGQSFQEGY--AGIFHFQLWQFGEWVDVVV 139
Query: 166 DDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYD-FPGSNSPGIRRSFTTVDCL 224
DD LP +L+ +S NE W ++LEKAY KV G Y+ G + FT
Sbjct: 140 DDLLPTKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTE 198
Query: 225 RIEFNP 230
+
Sbjct: 199 WYDLQK 204
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease,
thiol protease; 1.45A {Homo sapiens}
Length = 148
Score = 150 bits (379), Expect = 4e-42
Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 902 PFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFL 961
L +PY + I+G+W G +AGGC N+ T+ NNP YQ ++ LL+ L
Sbjct: 11 SSGLVPRGSPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEK----TGPLLIEL 66
Query: 962 KGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSP 1021
+GP+QYS+G ++ V + F K SG YR GF +E++N+PSG + I+PSTF P
Sbjct: 67 RGPRQYSVGFEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLP 126
Query: 1022 QQEGPFFLELKSSCSITISRIR 1043
+QEGPFFL+ S I I++++
Sbjct: 127 KQEGPFFLDFNSIIPIKITQLQ 148
Score = 28.3 bits (63), Expect = 6.9
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 846 PSNDPPPYLDGVRINSPHY---LCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCP 902
+ P +R +S Y C + L S + ++ S + + L + P
Sbjct: 82 STLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFLDFNSIIP 141
Query: 903 FRLEKIE 909
++ +++
Sbjct: 142 IKITQLQ 148
Score = 28.3 bits (63), Expect = 8.9
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 782 YTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 813
+ ++ S + + L + P ++ +++
Sbjct: 117 FNIIPSTFLPKQEGPFFLDFNSIIPIKITQLQ 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 3e-11
Identities = 100/696 (14%), Positives = 210/696 (30%), Gaps = 193/696 (27%)
Query: 38 NFVPFMNVDLAEKFQYAVPFTDKEGPLIL---SPKQKRDFVAWVRPSEFCSEPKMVAGEF 94
FV + + ++ + +E I+ + W S+ + + +F
Sbjct: 28 AFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQKF 82
Query: 95 VDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYN---PFGKYM 151
V+ + + + F+ S + + ++T +Y R++ +YN F KY
Sbjct: 83 VE-----EVLRINYKFLMS----PIKTEQRQPSMMT-RMYIEQRDR--LYNDNQVFAKYN 130
Query: 152 VKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNS 211
V +R P + Q L + + V +++ + G
Sbjct: 131 V-------SRLQ------PYLKLRQALL---ELRPAKNV-LIDG-----VLGS------- 161
Query: 212 PGIRRSFTTVDCLR-----IEFNPRLTWVLERNEPKNEQVKSRDELLSEKCHFLLSQALD 266
G +++ +D + + ++ W+ +N + E + E LL Q +D
Sbjct: 162 -G--KTWVALDVCLSYKVQCKMDFKIFWLNLKN-------CNSPETVLEMLQKLLYQ-ID 210
Query: 267 ADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSG----RDTYTEEE-KA------VL 315
+ D + I + L R + + + A +L
Sbjct: 211 PNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 316 LTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVR------PSE 369
LTT +F+ +++ T E +L ++ P E
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--------KYLDCRPQDLPRE 321
Query: 370 FCS-EPKMVA--GEFV-------DYF----SIKQTIVSDCSFVASLAVSALYERRFGKRL 415
+ P+ ++ E + D + K T + + S + L A Y + F RL
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLE-PAEYRKMF-DRL 378
Query: 416 VTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVI------IDDQLPMARFNQLLCSYS 469
++P + I ++ + M L YS
Sbjct: 379 S---VFPPS--------------AH-----IPTILLSLIWFDVIKSDVM-VVVNKLHKYS 415
Query: 470 ---QNKNELWVSILEKAYMKVMGGYDFPGSNSTLHA--LNGLDTGAARAIRPNDARILTQ 524
+ E +SI Y+++ + + LH ++ + + +D L
Sbjct: 416 LVEKQPKESTISIPS-IYLELKVKLE---NEYALHRSIVDHYN--IPKTFDSDD---LIP 466
Query: 525 TSVFENLFTRL--HSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKN 582
+ + ++ + H +K E T+ V R L+ K
Sbjct: 467 PYLDQYFYSHIGHH-----------------LKNIEHPERMTLFRMVFLD--FRFLEQKI 507
Query: 583 PWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNW 642
+ W + S L+ L +LK + + DN YE ++ F
Sbjct: 508 RHDSTAWNASGSILNTLQ---QLKFYKPY------ICDND---PKYERLVNAILDFLPKI 555
Query: 643 NPGLFSHTFC--VHQELTFEKKNGNSTNCVKTAKQL 676
L + + L E + + KQ+
Sbjct: 556 EENLICSKYTDLLRIALMAE----DEAIFEEAHKQV 587
Score = 61.0 bits (147), Expect = 2e-09
Identities = 92/634 (14%), Positives = 180/634 (28%), Gaps = 239/634 (37%)
Query: 520 RILTQTSVFENLFTRLH----SRAMFWLPWCKREICLRMKKRE---RSRVDTMQSSVSWS 572
IL+ +++ + +FW L K+ E + + ++ + +
Sbjct: 44 SILS-KEEIDHIIMSKDAVSGTLRLFW--------TLLSKQEEMVQKFVEEVLRINYKF- 93
Query: 573 QGLRLLQLKNPWSNV-----RWRGNY-SELDRLHWTP---------------ELKRAL-N 610
L +P Y + DRL+ +L++AL
Sbjct: 94 -------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 611 FDPNS-------------------------ASMFDNGIFWIDY------ESIL----RFY 635
P D IFW++ E++L +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 636 DVFYMNWNPGLFSHTFCVHQELTFEK-------KNGNSTNC------VKTAKQL------ 676
NW H+ + + + K+ NC V+ AK
Sbjct: 207 YQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 677 --------SIVVFDYV----TFKPVIIRNS-------SLDYFGQW--------PPSTPAA 709
V D++ T + +S ++ P
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 710 SPKRN--FWILLTRHITQLEDFKQ-NREYITVLV-------YKNEGKRVY-----YPYD- 753
+P+R + + +++K N + +T ++ E ++++ +P
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 754 --PPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKM----HTIYYTLRAYATCPF 807
P L + + +++N+ KY+LV Q ++ +IY L+
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKV------ 437
Query: 808 RLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSND-PPPYLDGVRINSPHYLC 866
K+EN Y + I Y N + S+D PPYLD Y
Sbjct: 438 ---KLENEYA----LHRSIVDHY---------NIPKTFDSDDLIPPYLDQ-------YFY 474
Query: 867 KIILNENSSRKYTLV-VSQYEKMH---TIYYTLRAYATCPFRLEKIENPYQFKEEISGEW 922
I + L + E+M ++ R F +KI +
Sbjct: 475 SHI-------GHHLKNIEHPERMTLFRMVFLDFR------FLEQKIRH--------DS-- 511
Query: 923 KGLTAGGCPNYPA-------TY-----PNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLG 970
TA Y N+P+Y + + N +L FL ++ +
Sbjct: 512 ---TAWNASGSILNTLQQLKFYKPYICDNDPKY-------ERLVNAILDFLPKIEENLIC 561
Query: 971 VKISC-VRLDDETATAPFKTKDSGAYRSGFVAVE 1003
K + +R+ +D + V+
Sbjct: 562 SKYTDLLRI-------ALMAEDEAIFEEAHKQVQ 588
Score = 55.6 bits (133), Expect = 7e-08
Identities = 99/665 (14%), Positives = 194/665 (29%), Gaps = 195/665 (29%)
Query: 183 QNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNP-------RLTWV 235
Q + + +S+ E A++ D + + + I + RL W
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDM----PKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 236 LERNEPKNEQVKSR--DELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHR 293
L K E++ + +E+L FL+S E ++Y++ + L+
Sbjct: 71 LLS---KQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRD----RLYN 121
Query: 294 GSSQHLK--VSGRDTYTEEEKAVLLTTSKINNLNFVPFM----------NVDLAEKFQYA 341
+ K VS Y + +A LL N+ + + +V L+ K Q
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 342 VPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVD-YFSIKQTIVSDCSFVAS 400
+ F + W+ C+ P+ V + I S ++
Sbjct: 180 MDFK----------------IFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 401 LAVSALYERRFGKRLVTSIIYPRN-------RNKEPVYNPFG---KYMVKLHLNGITRKV 450
+ + + +RL+ S Y +N + +N F K ++ TR
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLSCKILL------TTRFK 275
Query: 451 IIDDQLPMAR------------FN-----QLLCSYSQNK-----------NELWVSILEK 482
+ D L A LL Y + N +SI+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-A 334
Query: 483 AYMKVM----GGYDFPGSNSTLHA----LNGLDTGAAR------AIRPNDARILTQTSVF 528
++ + + LN L+ R ++ P A I T
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--- 391
Query: 529 ENLFTRLHSRAMFWLPWCKREICLRMKK-RERSRVDTMQSSVSWSQGLRLLQLKNPWSNV 587
L ++ W K ++ + + K + S V+ + + + + L+
Sbjct: 392 --L-------SLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIYLEL----- 435
Query: 588 RWRGNYSELDRLHWTPELKRALN-------FDPNSASM--FDNGIFW-IDYE-SILRFYD 636
+ LH + ++ FD + D + I + + +
Sbjct: 436 --KVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 637 VFYMNWNPGLFSHTFCVHQELTF-EKK-NGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNS 694
LF F + F E+K +ST + L+ + +KP I N
Sbjct: 489 RM------TLFRMVF---LDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICDN- 537
Query: 695 SLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITV---------LVYKNEG 745
PK R + + DF E + + E
Sbjct: 538 ---------------DPKY------ERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 746 KRVYY 750
+ ++
Sbjct: 577 EAIFE 581
Score = 40.2 bits (93), Expect = 0.004
Identities = 61/420 (14%), Positives = 123/420 (29%), Gaps = 144/420 (34%)
Query: 27 VLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVR------P 80
+LLTT +F+ +++ T E +L ++ P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--------KYLDCRPQDLP 319
Query: 81 SEFCS-EPKMVA--GEFV-------DYF----SIKQTIVSDCSFVASLAVSALYERRFGK 126
E + P+ ++ E + D + K T + + S + L A Y + F
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLE-PAEYRKMF-D 376
Query: 127 RLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKN 186
RL ++P + I + L
Sbjct: 377 RLS---VFPPS--------------AH-----IPTIL--------------LSL------ 394
Query: 187 ELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNEPKNEQV 246
+W +++ M V+ + S ++E+ PK +
Sbjct: 395 -IWFDVIKSDVMVVVNKL---------HKYS-----------------LVEKQ-PKESTI 426
Query: 247 KSRDELLSEKCHFLLSQALDADEAGLKDTAVQLY-----MQSIEMTKPTL------HRGS 295
L K +E L + V Y S ++ P L H G
Sbjct: 427 SIPSIYLELKVK-------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG- 478
Query: 296 SQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSP 355
HLK + V L + F L +K ++ + G ++ +
Sbjct: 479 -HHLKNIEHPERMTLFRMVFL------DFRF-------LEQKIRHDSTAWNASGSILNTL 524
Query: 356 KQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIK---QTIVSDCSFVASLAV----SALYE 408
+Q + + ++ + + + + +D F K I S + + +A+ A++E
Sbjct: 525 QQLKFYKPYICDN--DPKYERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 37.5 bits (86), Expect = 0.030
Identities = 50/382 (13%), Positives = 121/382 (31%), Gaps = 87/382 (22%)
Query: 690 IIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDF-----KQNREYITVLVYKNE 744
I+ +D+ + R FW LL++ ++ F + N +++ + K E
Sbjct: 45 ILSKEEIDHIIMSK--DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTE 101
Query: 745 GK------RVYYPY------DPPPYLDG--VRINSPHYLCKIILNENSSR---------- 780
+ R+Y D + R+ L + +L ++
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 781 -KYTLV--VSQYEKMHT-----IYY-TLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYD 831
K + V K+ I++ L+ + LE ++ + D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----------LLYQID 210
Query: 832 LMFMFTSENAWRMR-PSNDPPPYLDGVRINSPHYLCKIILNENSSRKY---------TLV 881
+ S+++ ++ + L + + P+ C ++L + K L+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 882 VSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKE--EISGEWKGLTAGGCPNYPATYPN 939
++++ + L A T L+ E + ++ P
Sbjct: 271 TTRFK---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTT 325
Query: 940 NPRYQVTL------DSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSG 993
NPR ++++ D + DN V + + ++ S L+ P + +
Sbjct: 326 NPR-RLSIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLE------PAEYRK-- 373
Query: 994 AYRSGFVAVEMDNLPSGTYEIM 1015
+ V ++P+ ++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLI 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 5e-10
Identities = 87/530 (16%), Positives = 163/530 (30%), Gaps = 188/530 (35%)
Query: 224 LRIEFNPRLTWVLERNEPKNEQVKSRDELLSEKCHFL--LSQALDADEAGLKDTAVQL-- 279
L+ +FN L E +E + EL+ FL +S ++ + G D + L
Sbjct: 33 LQEQFNKILPEPTEGFAADDEP-TTPAELVG---KFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 280 ------YMQ---------SIEMTKPTLHRGSSQHLK-------VSGRDTYTEEEKAVLLT 317
Y++ + T + + +K ++ R + ++ + L
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKKSNSALFR 147
Query: 318 TSKINNLNFVPFM----NVD-----LAEKFQ-YAVPFTDKEGPLILSPKQKRDFVAWVRP 367
N V N D L + +Q Y L+ D + +
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH--------VLV------GDLIKFSAE 193
Query: 368 --SEFCSEPKMVAGEFVDYFSIKQ-----TIVSDCSFVASLAVS---------ALYE--- 408
SE F +I + + D ++ S+ +S A Y
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 409 RRFGKR-----------------LVTSII------------------------------- 420
+ G LVT++
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 421 YPRNR-----NKEPVYNPFGK--YMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKN 473
YP ++ + N G M L ++ +T++ + D + + N L + Q
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPM--LSISNLTQEQVQDY---VNKTNSHLPAGKQ--- 365
Query: 474 ELWVSILEKAYMKVMGGYDFPGS----NSTLH---ALNGLDTGAARAIRPNDARILTQTS 526
+ +S++ A V+ G P S N TL A +GLD +R P R L ++
Sbjct: 366 -VEISLVNGAKNLVVSGP--PQSLYGLNLTLRKAKAPSGLDQ--SRI--PFSERKLKFSN 418
Query: 527 VFENLFTRLHSRAMFWLPWCKREICLRMKK-RERSRVDTMQSSVSWSQGLRLLQLKNP-- 583
F + + HS + + D ++++VS++ ++ P
Sbjct: 419 RFLPVASPFHS------HL--------LVPASDLINKDLVKNNVSFNAK----DIQIPVY 460
Query: 584 ----WSNVR-WRGNYSEL-------DRLHWTPELK----RALNFDPNSAS 617
S++R G+ SE + W + L+F P AS
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Score = 42.3 bits (99), Expect = 0.001
Identities = 103/618 (16%), Positives = 197/618 (31%), Gaps = 241/618 (38%)
Query: 56 PFTDKEGPL---ILSPK-------QKRD-FVAWV-RPSE-FCS--EPKMVA---GEFVDY 97
P T G L +L P Q ++ F + P+E F + EP A G+F+ Y
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 98 FS--IKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLH 155
S ++ + V V +L ++ +E + L + +H
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTE-FENCY---L---------EGND------------IH 102
Query: 156 LNGITRKVIIDDQLPMARFNQLLCSY------------SQNKNELWVSILEKAY--MKVM 201
+ K++ ++ + + +L+ +Y ++ + L+ ++ E + +
Sbjct: 103 --ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 202 GGYDFPGSNSPG---IRRSFTTVDCLRIEFNPRLTWVLERNEPK-NEQVKSRDELLSEKC 257
GG G+ +R + T ++ + +++ + +E +++ +
Sbjct: 161 GGQ---GNTDDYFEELRDLYQT-------YHVLVGDLIKFSAETLSELIRT-----TLDA 205
Query: 258 HFLLSQALDADEAGLKDTAV---QLYMQSIEMTKPTLHRGSSQ--H----LKVSGRDTYT 308
+ +Q L+ E L++ + + Y+ SI ++ P + G Q H K+ G +T
Sbjct: 206 EKVFTQGLNILEW-LENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLG---FT 259
Query: 309 EEEKAVLL--TTSKINNL-------------NFVPFMNVDLAEKF--------QYAVPFT 345
E L T L +F F++V A A P T
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 346 DKEGPLILSPKQKRDFVAWV--RPSEFCSEPKM--VAG-------EFVDYF--------- 385
L P D + PS P M ++ ++V+
Sbjct: 318 S------LPPSILEDSLENNEGVPS-----P-MLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 386 -SI------KQTIVSDCSFVASL-----------AVSALYERR--FGKR--------LVT 417
I K +VS SL A S L + R F +R L
Sbjct: 366 VEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 418 S-----------------------IIYPRNRNKEPVYNPF-GKYMVKLHLNGITRKVIID 453
+ + + + PVY+ F G + L + I+ +++
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS-ISERIV-- 480
Query: 454 DQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDF-PGSNS-----TLHALNGLD 507
D + W + + ++ DF PG S T +G
Sbjct: 481 DCIIRLPVK-------------WETTTQFKATHIL---DFGPGGASGLGVLTHRNKDG-- 522
Query: 508 TGAARAI-------RPND 518
TG R I P+D
Sbjct: 523 TG-VRVIVAGTLDINPDD 539
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 35.0 bits (80), Expect = 0.025
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 255 EKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGS 295
+K L S+A D+AG + A+QLY +++ + +
Sbjct: 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEA 56
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 116
Score = 34.3 bits (78), Expect = 0.043
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 260 LLSQALDADEAGLKDTAVQLYMQSIE 285
+++ L+ DE G K+ A Y Q I
Sbjct: 25 FVNKGLNTDELGQKEEAKNYYKQGIG 50
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 105
Score = 31.3 bits (71), Expect = 0.43
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 940 NPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGF 999
N T+ +R + L + ++GP KI+C D + +A + G Y
Sbjct: 27 NKPNVFTVVTRGAGIGGLGITVEGPS----ESKINCRDNKDGSCSAEYIPFAPGDYD--- 79
Query: 1000 VAVEMDNLP 1008
V +
Sbjct: 80 VNITYGGAH 88
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 30.6 bits (69), Expect = 0.56
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 248 SRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLK 300
S + S +L +A++ D A+ Y + I+M L +
Sbjct: 6 SGQDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKR 58
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 32.1 bits (74), Expect = 0.91
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 500 LHA-LNGLDTGAARAIRPNDA-RILTQTSVFE---NLFTRLHSRAMFWLPWCKREICLRM 554
LH L +D AA I PND R+ VF T L + LP+ + +
Sbjct: 145 LHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAP 204
Query: 555 KKRER------SRVDTMQSSVSWSQGL 575
RE R M + G
Sbjct: 205 ASRELLHQRIEQRFHQM-----LASGF 226
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 32.1 bits (74), Expect = 1.0
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 27/98 (27%)
Query: 500 LHA-LNGLDTGAARAIRPNDA-RI--------LT------QTSVFENLFTRLHSRAMFWL 543
LH L +D +A I PND R+ L + L
Sbjct: 140 LHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQL 199
Query: 544 PWCKREICLRMKKRER------SRVDTMQSSVSWSQGL 575
P+ ++ + ++R+ R M QG
Sbjct: 200 PYTVAQLAIAPEQRQVLHARIAQRFRQM-----LEQGF 232
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 131
Score = 30.6 bits (69), Expect = 1.1
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 901 CPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVF 960
P+ +E P K + G GL GG PA T+D++ + L +
Sbjct: 19 SPYTVEASLPPDPSKVKAHGP--GLE-GGLVGKPAE--------FTIDTKGAGTGGLGLT 67
Query: 961 LKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLP 1008
++GP KI C D T + + G Y V + + +
Sbjct: 68 VEGPC----EAKIECSDNGDGTCSVSYLPTKPGEYF---VNILFEEVH 108
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 255 EKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSGRDTYTE 309
K L+ +A+D D A + A Y ++ L + K R +TE
Sbjct: 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTE 65
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 29.5 bits (66), Expect = 7.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 260 LLSQALDADEAGLKDTAVQLYMQSIE 285
L S+A D+AG + A+QLY +++
Sbjct: 14 LASKAAQEDKAGNYEEALQLYQHAVQ 39
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic
groups, and carriers, transferase; HET: PT1; 1.90A
{Coxiella burnetii}
Length = 314
Score = 29.1 bits (66), Expect = 7.6
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 238 RNEPKNEQVKSRDELLSEKCHFLLSQALDADEAGLKD 274
+E + + L L +AG+ +
Sbjct: 157 PSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISE 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,056,739
Number of extensions: 971298
Number of successful extensions: 1605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 52
Length of query: 1043
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 940
Effective length of database: 3,825,930
Effective search space: 3596374200
Effective search space used: 3596374200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)