RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1431
(1043 letters)
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 323
Score = 166 bits (421), Expect = 4e-46
Identities = 65/337 (19%), Positives = 119/337 (35%), Gaps = 40/337 (11%)
Query: 325 NFVPFMNVD----LAEKFQYAVPFTDKEGPLILS---------PKQKRDFVAWVRPSEFC 371
+ ++N D E + F D P + S K + W RP+E C
Sbjct: 2 RAIKYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEIC 61
Query: 372 SEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 431
++P+ + G I Q + D +A++A L E + + ++
Sbjct: 62 ADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEEILARVVPL--------DQSFQE 112
Query: 432 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 491
N G + + G +V++DD+LP +LL +S +E W ++LEKAY K+ G Y
Sbjct: 113 NYAGIFHFQFWQYGEWVEVVVDDRLPTKD-GELLFVHSAEGSEFWSALLEKAYAKINGCY 171
Query: 492 DFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREIC 551
+ +T G A + + +
Sbjct: 172 EALSGGATTEGFEDFTGGIAEWYELRK-----PPPNLFKIIQKALEKGSLLGCSIDITSA 226
Query: 552 LRMKKRERSRV-------DTMQSSVSWSQGL-RLLQLKNPWSNVRWRGNYSELDRLHWTP 603
+ ++ T V S L +L++++NPW V W G +++ T
Sbjct: 227 ADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTV 286
Query: 604 ELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYM 640
+ + N ++G FW+ + LR Y +
Sbjct: 287 DPEVRANLTERQ----EDGEFWMSFSDFLRHYSRLEI 319
Score = 123 bits (310), Expect = 2e-31
Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 23/189 (12%)
Query: 38 NFVPFMNVD----LAEKFQYAVPFTDKEGPLILS---------PKQKRDFVAWVRPSEFC 84
+ ++N D E + F D P + S K + W RP+E C
Sbjct: 2 RAIKYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEIC 61
Query: 85 SEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 144
++P+ + G I Q + D +A++A L E + + ++
Sbjct: 62 ADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEEILARVVPL--------DQSFQE 112
Query: 145 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 204
N G + + G +V++DD+LP +LL +S +E W ++LEKAY K+ G Y
Sbjct: 113 NYAGIFHFQFWQYGEWVEVVVDDRLPTKD-GELLFVHSAEGSEFWSALLEKAYAKINGCY 171
Query: 205 DFPGSNSPG 213
+ +
Sbjct: 172 EALSGGATT 180
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 322
Score = 162 bits (410), Expect = 1e-44
Identities = 65/340 (19%), Positives = 115/340 (33%), Gaps = 46/340 (13%)
Query: 325 NFVPFMNVDLAEKFQYA----VPFTDKE--------GPLILSPKQKRDF-VAWVRPSEFC 371
N + ++ D V F D G L P + + + W RP+E
Sbjct: 1 NAIKYLGQDYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELL 60
Query: 372 SEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 431
S P+ + I Q + DC +A++A L E + + +
Sbjct: 61 SNPQFIVDG-ATRTDICQGALGDCWLLAAIASLTLNETILHRVVPY--------GQSFQE 111
Query: 432 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 491
G + +L G V++DD LP +L+ +S NE W ++LEKAY KV G Y
Sbjct: 112 GYAGIFHFQLWQFGEWVDVVVDDLLPTKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSY 170
Query: 492 DFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREIC 551
+ T A G A +L+ +
Sbjct: 171 EALSGGCTSEAFEDFTGGVTEWYDLQKAPS--------DLYQIILKALERGSLLGCSINI 222
Query: 552 LRMKKRERSRVDTMQSSVSWS-----------QGLRLLQLKNPWSNVRWRGNYSELDRLH 600
++ E + ++S Q + L++++NPW V W+G +S+ +
Sbjct: 223 SDIRDLEAITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSD-NSYE 281
Query: 601 WTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYM 640
W ++G FW+ + +R + +
Sbjct: 282 WNKVDPYEREQLR---VKMEDGEFWMSFRDFIREFTKLEI 318
Score = 116 bits (291), Expect = 7e-29
Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 23/189 (12%)
Query: 38 NFVPFMNVDLAEKFQYA----VPFTDKE--------GPLILSPKQKRDF-VAWVRPSEFC 84
N + ++ D V F D G L P + + + W RP+E
Sbjct: 1 NAIKYLGQDYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELL 60
Query: 85 SEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 144
S P+ + I Q + DC +A++A L E + + +
Sbjct: 61 SNPQFIVDG-ATRTDICQGALGDCWLLAAIASLTLNETILHRVVPY--------GQSFQE 111
Query: 145 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 204
G + +L G V++DD LP +L+ +S NE W ++LEKAY KV G Y
Sbjct: 112 GYAGIFHFQLWQFGEWVDVVVDDLLPTKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSY 170
Query: 205 DFPGSNSPG 213
+
Sbjct: 171 EALSGGCTS 179
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain
(domain II) {Human (Homo sapiens), calpain 9 [TaxId:
9606]}
Length = 310
Score = 153 bits (386), Expect = 1e-41
Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 38/314 (12%)
Query: 342 VPFTDKEGP-----LILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCS 396
F D + P L S + + FV W RP E P+ + G I Q + DC
Sbjct: 14 TLFEDADFPASNSSLFYSERPQIPFV-WKRPGEIVKNPEFILGG-ATRTDICQGELGDCW 71
Query: 397 FVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQL 456
+A++A L ++ + + P++++ P Y G + + + V+IDD+L
Sbjct: 72 LLAAIASLTLNQKALAR------VIPQDQSFGPGYA--GIFHFQFWQHSEWLDVVIDDRL 123
Query: 457 PMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRP 516
P R ++L+ +S + NE W ++LEKAY K+ G Y+ S + A+ G A +
Sbjct: 124 PTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQT 182
Query: 517 NDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERS--------RVDTMQSS 568
+A F + + R + + R V +
Sbjct: 183 KEA-----PENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQV 237
Query: 569 VSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFW 625
Q + L++++NPW V W G++S+ W P ++ L D+G FW
Sbjct: 238 SFRGQRIELIRIRNPWGQVEWNGSWSDSSP-EWRSVGPAEQKRLCHTA-----LDDGEFW 291
Query: 626 IDYESILRFYDVFY 639
+ ++ +D
Sbjct: 292 MAFKDFKAHFDKVE 305
Score = 110 bits (276), Expect = 5e-27
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 55 VPFTDKEGP-----LILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCS 109
F D + P L S + + FV W RP E P+ + G I Q + DC
Sbjct: 14 TLFEDADFPASNSSLFYSERPQIPFV-WKRPGEIVKNPEFILGG-ATRTDICQGELGDCW 71
Query: 110 FVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQL 169
+A++A L ++ + + P++++ P Y G + + + V+IDD+L
Sbjct: 72 LLAAIASLTLNQKALAR------VIPQDQSFGPGYA--GIFHFQFWQHSEWLDVVIDDRL 123
Query: 170 PMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPG 213
P R ++L+ +S + NE W ++LEKAY K+ G Y+ S
Sbjct: 124 PTFR-DRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAI 166
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 159
Score = 89.1 bits (220), Expect = 4e-21
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 918 ISGEW-KGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN------TLLVFL--------- 961
+ G W +G TAGGC NYP T+ NP+Y + L+ D T LV L
Sbjct: 6 MDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQR 65
Query: 962 -KGPKQYSLGVKISCVRLDDETATAPFKTKD----------SGAYRSGFVAVEMDNLPSG 1010
G +++G I V + T +K+ S + + + LP G
Sbjct: 66 KMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPG 125
Query: 1011 TYEIMPSTFSPQQEGPFFLELKSSCSITISRI 1042
Y ++PSTF P + G F + + S +
Sbjct: 126 EYVLVPSTFEPHKNGDFCIRVFSEKKADYQTV 157
Score = 52.5 bits (125), Expect = 2e-08
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 13/109 (11%)
Query: 715 FWILLTRHITQLEDFKQNREYITVLVYKNEG----------KRVYYPYDPPPYLDGVRIN 764
L+ +H + ++ I +Y+ + ++ IN
Sbjct: 53 LVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFIN 112
Query: 765 SPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 813
L + L Y LV S +E + +R ++ + ++
Sbjct: 113 LREVLNRFKLPPGE---YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVD 158
Score = 40.2 bits (93), Expect = 3e-04
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 847 SNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLE 906
IN L + L Y LV S +E + +R ++ +
Sbjct: 99 LTTRARERSDTFINLREVLNRFKLPPGE---YVLVPSTFEPHKNGDFCIRVFSEKKADYQ 155
Query: 907 KIE 909
++
Sbjct: 156 TVD 158
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 159
Score = 85.9 bits (212), Expect = 4e-20
Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 28/153 (18%)
Query: 918 ISGEW-KGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDN--------TLLVFL------- 961
G W +G TAGGC NYPAT+ NP++++ L+ D+ + L+ L
Sbjct: 6 YEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRR 65
Query: 962 ---KGPKQYSLGVKISCVRLDDETATAPFKTK---------DSGAYRSGFVAVEMDNLPS 1009
G ++G + V + K S + + LP
Sbjct: 66 ERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPP 125
Query: 1010 GTYEIMPSTFSPQQEGPFFLELKSSCSITISRI 1042
G Y ++PSTF P +EG F L S +
Sbjct: 126 GEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQEL 158
Score = 34.7 bits (79), Expect = 0.021
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 718 LLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYL---------DGVRINSPHY 768
L+ +H + F ++ E I VY+ + P IN
Sbjct: 58 LMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREV 117
Query: 769 LCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 813
+I L Y +V S +E + LR ++ ++++
Sbjct: 118 SNRIRLPPGE---YIVVPSTFEPNKEGDFLLRFFSEKKAGTQELD 159
Score = 28.9 bits (64), Expect = 1.8
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 856 GVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 909
IN +I L Y +V S +E + LR ++ ++++
Sbjct: 109 EHFINLREVSNRIRLPPGE---YIVVPSTFEPNKEGDFLLRFFSEKKAGTQELD 159
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 34.1 bits (78), Expect = 0.011
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 248 SRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLK 300
S + S +L +A++ D A+ Y + I+M L +
Sbjct: 6 SGQDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKR 58
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1
protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 32.5 bits (74), Expect = 0.028
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 248 SRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIE 285
S +K L S+A D+AG + A+QLY +++
Sbjct: 2 SSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 39
>d1c3aa_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Habu snake
(Trimeresurus flavoviridis), flavocetin-A [TaxId:
88087]}
Length = 135
Score = 32.4 bits (72), Expect = 0.11
Identities = 12/105 (11%), Positives = 23/105 (21%), Gaps = 2/105 (1%)
Query: 565 MQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIF 624
+W + S++ + E D + K +F +
Sbjct: 19 FSKPKNWEDAESFCEEGVKTSHLVSIESSGEGDFVAQLVAEKIKTSFQYVWIGLRIQNKE 78
Query: 625 WIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNC 669
V Y N C + E + + C
Sbjct: 79 QQCRSEWSDASSVNYENLVKQFSKK--CYALKKGTELRTWFNVYC 121
>d1lo7a_ d.38.1.1 (A:) 4-hydroxybenzoyl-CoA thioesterase
{Pseudomonas sp., CBS-3 [TaxId: 306]}
Length = 140
Score = 28.2 bits (62), Expect = 3.1
Identities = 6/122 (4%), Positives = 23/122 (18%), Gaps = 17/122 (13%)
Query: 587 VRWR----------GNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRF-- 634
+ + NY + + + F
Sbjct: 10 IEFGDCDPAGIVWYPNYHRWLDAASRNYFIKCGLPPWRQTVVERGIVGTPIVSCNASFVC 69
Query: 635 -----YDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPV 689
+ +F ++ G+ ++ + + D + +
Sbjct: 70 TASYDDVLTIETCIKEWRRKSFVQRHSVSRTTPGGDVQLVMRADEIRVFAMNDGERLRAI 129
Query: 690 II 691
+
Sbjct: 130 EV 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,001,512
Number of extensions: 195238
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 23
Length of query: 1043
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 948
Effective length of database: 1,103,246
Effective search space: 1045877208
Effective search space used: 1045877208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)