BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14311
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
NL + +G APL+ V + V +GYG TE + I +T +GD P G +
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVP 369
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
K++D+ +GEVCV+G + GY +PE IDE GW HTGD+G +
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
Query: 143 PTLFFFFIPMLVIMLMY 159
FF + L ++ Y
Sbjct: 430 EEKHFFIVDRLKSLIKY 446
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
NL + +G APL+ V + I +GYG TE + I +T +GD P VG +
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 372
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
K+VD+ +GE+CVRG + GY +PE + ID+ GW H+GD+ W
Sbjct: 373 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 432
Query: 143 PTLFFFFIPMLVIMLMY 159
FF + L ++ Y
Sbjct: 433 EDEHFFIVDRLKSLIKY 449
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
NL + +G APL+ V + V +GYG TE + I +T +GD P G +
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVP 369
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
K++D+ +GEVCV+G + GY +PE IDE GW HTGD+G +
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
Query: 143 PTLFFFFIPMLVIMLMY 159
FF + L ++ Y
Sbjct: 430 EEKHFFIVDRLKSLIKY 446
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
NL + +G APL+ V + V +GYG TE + I +T +GD P G +
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVP 369
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
K++D+ +GEVCV+G + GY +PE IDE GW HTGD+G +
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
Query: 143 PTLFFFFIPMLVIMLMY 159
FF + L ++ Y
Sbjct: 430 EEKHFFIVDRLKSLIKY 446
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
NL + +G APL+ V + I +GYG TE + I +T +GD P VG +
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 367
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
K+VD+ +GE+CVRG + GY +PE + ID+ GW H+GD+ W
Sbjct: 368 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 143 PTLFFFFIPMLVIMLMY 159
FF + L ++ Y
Sbjct: 428 EDEHFFIVDRLKSLIKY 444
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
NL + +G APL+ V + I +GYG TE + I +T +GD P VG +
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 367
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
K+VD+ +GE+CVRG + GY +PE + ID+ GW H+GD+ W
Sbjct: 368 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 143 PTLFFFFIPMLVIMLMY 159
FF + L ++ Y
Sbjct: 428 EDEHFFIVDRLKSLIKY 444
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
NL + +G APL+ V + I +GYG TE + I +T +GD P VG +
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVP 372
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
K+VD+ +GE+ VRG + GY +PE + ID+ GW H+GD+ W
Sbjct: 373 FFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 432
Query: 143 PTLFFFFIPMLVIMLMY 159
FF + L ++ Y
Sbjct: 433 EDEHFFIVDRLKSLIKY 449
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQG-DYVPEHVGPPI 83
NL + +G APLA V + I +GYG TE + I +T +G D P G +
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVV 401
Query: 84 CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMW 141
S K+VD+ +GE+CV+G + GY +PE S ID+ GW H+GD+ +
Sbjct: 402 PFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYY 461
Query: 142 LPTLFFFFIPMLVIMLMY 159
+FF + L ++ Y
Sbjct: 462 DKDGYFFIVDRLKSLIKY 479
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 18 KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
++ ++ G+ RL ++GSAPL + G V+E YG TE + GD VP
Sbjct: 261 RLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPG 320
Query: 78 HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
VGP + S ++ D PE G G + V+G NVF GY++ PE + + G+
Sbjct: 321 AVGPALPGVSARVTD-PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFI 379
Query: 135 TGDVG 139
TGD+G
Sbjct: 380 TGDLG 384
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 18 KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
++ + G++RL ++GSAPL + G V+E YG TE + GD VP
Sbjct: 261 RLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPG 320
Query: 78 HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
VGP + S ++ D PE G G + V G NVF GY++ PE + + G+
Sbjct: 321 AVGPALPGVSARVTD-PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 135 TGDVG 139
TGD+G
Sbjct: 380 TGDLG 384
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 18 KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
++ + G++RL ++GSAPL + G V+E YG TE + GD VP
Sbjct: 261 RLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPG 320
Query: 78 HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
VGP + S ++ D PE G G + V G NVF GY++ PE + + G+
Sbjct: 321 AVGPALPGVSARVTD-PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 135 TGDVG 139
TGD+G
Sbjct: 380 TGDLG 384
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 18 KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
++ + G++RL ++GSAPL + G V+E YG TE + GD VP
Sbjct: 261 RLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPG 320
Query: 78 HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
VGP + S ++ D PE G G + V G NVF GY++ PE + + G+
Sbjct: 321 AVGPALPGVSARVTD-PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 135 TGDVG 139
TGD+G
Sbjct: 380 TGDLG 384
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPI 83
+LR++ +G APL + +R + +GYG TE + + + P + P
Sbjct: 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGA 356
Query: 84 CCCSV-----KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTG 136
C V K+VD GE+C+RG+ + GY DPE S ID+ GW HTG
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG 416
Query: 137 DVGMWLPTLFFFFIPMLVIMLMY 159
D+G F + L ++ Y
Sbjct: 417 DIGYIDDDDELFIVDRLKELIKY 439
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
RL+++GSA L + + A G VIE YG TE + ++ G+ VG P+
Sbjct: 275 RLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334
Query: 88 VKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMWLP 143
++LV+ A +G+ GE+ VRG N+F Y P+ + E G+ TGD+ + P
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394
Query: 144 TLFFFFI 150
+ +
Sbjct: 395 DGYVRIV 401
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 25 GNLRLMLAGSAPLAGNV-----LTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV 79
++R++ +G+APL + F LG +GYG TE + +++ P V
Sbjct: 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLG----QGYGMTEAGPVLAMSLGFAKEPFPV 399
Query: 80 GPPICCCSV-----KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGW 132
C V K+VD D + GE+C+RG+ + GY +P +ID+ GW
Sbjct: 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGW 459
Query: 133 HHTGDVGMWLPTLFFFFIPMLVIMLMY 159
HTGD+G+ F + L ++ Y
Sbjct: 460 LHTGDIGLIDDDDELFIVDRLKELIKY 486
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 57 YGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFL 116
+GQ+E T D P+ G P+ +V +VD + E GE+ +RG VF
Sbjct: 302 FGQSETSGLSTFAPYRDR-PKSAGRPLFWRTVAVVDAEDRPLPPGE-VGEIVLRGPTVFK 359
Query: 117 GYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFF 149
GY+ + GWHHTGD+G + + F+
Sbjct: 360 GYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFY 393
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTE-CVAPITLTIQGDYV-PEHVGP 81
NL+ +L G A L+ T + AL + +G TE C +T T + + P+ VG
Sbjct: 275 NLQKILLGGAKLSA---TMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGM 331
Query: 82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG 139
P VK+ + + EG GE+ ++G NV GY +L E G+ +TGD+
Sbjct: 332 PSANVDVKIKNPNK------EGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIA 383
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 9 SIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPIT- 67
S+W + + + +L+L+ G A L+ + + +GC + + +G E + T
Sbjct: 286 SLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTR 345
Query: 68 LTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN-- 125
L + + G P+C V E + G + RG F GY+K P+ N
Sbjct: 346 LDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 405
Query: 126 SIDELGWHHTGDV 138
+ D G++ +GD+
Sbjct: 406 AFDANGFYCSGDL 418
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 21 EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPIT-LTIQGDYVPEHV 79
+D +L+L+ G A ++ + L C + + +G E + T L + +
Sbjct: 303 KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQ 362
Query: 80 GPPICCCS-VKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWHHT 135
G PI +K+VD E EG+ G + RG F GY++ PE NS DE ++++
Sbjct: 363 GRPISSDDEIKIVD--EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS 420
Query: 136 GDVGMWLP 143
GD+ P
Sbjct: 421 GDLVQRTP 428
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 31/152 (20%)
Query: 19 VQEDMG----GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY 74
++ED+ L+ + PL V G ++EG+GQTE V I +
Sbjct: 331 IKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEP 390
Query: 75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGK-------GEVCV-----RGNNVFLGYFKDP 122
P +G P ++L+D +G+ GE+ + + +F+ Y KDP
Sbjct: 391 KPGSIGKPTPGYKIELMD--------RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDP 442
Query: 123 ELNSIDELGWH----HTGDVGMWLPTLFFFFI 150
E E WH HTGD+ + +F+
Sbjct: 443 ERT---EETWHDGYYHTGDMAWMDEDGYLWFV 471
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 51 CLVIEGYGQTECVAPIT-LTIQGDYVPEHVGPPI--CCCSVKLVDVPEMDYFAHEG-KGE 106
++ YG TE +T + + + + ++ P+ C +L+ + E A +G KGE
Sbjct: 288 ATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGE 347
Query: 107 VCVRGNNVFLGYFKDPELNS-----IDELGWHHTGDVGMWLPTLFFF 148
+ + G +V +GY PEL ID + TGD G L F+
Sbjct: 348 IVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFY 394
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 51 CLVIEGYGQTECVAPIT-LTIQGDYVPEHVGPPI--CCCSVKLVDVPEMDYFAHEG-KGE 106
++ YG TE +T + + + + ++ P+ C +L+ + E A +G KGE
Sbjct: 288 ATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGE 347
Query: 107 VCVRGNNVFLGYFKDPELNS-----IDELGWHHTGDVGMWLPTLFFF 148
+ + G +V +GY PEL ID + TGD G L F+
Sbjct: 348 IVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFY 394
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
+ R + G AP+ L + A V++GY TE TL + D + G
Sbjct: 271 DFRYFITGGAPMP-EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDAL-RKAGSAGRA 328
Query: 86 CSVKLVDVPEMDYFAHE-GKGEVCVRGNNVFLGYFKDPEL--NSIDELGWHHTGDVG 139
V V D E G+GEV ++ + + Y+ PE ++ D GW TGD+G
Sbjct: 329 TMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIG 384
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 97 DYFAHEGKGEVCVRGNN-VFLGYFKDPELNSID-ELGWHHTGDVGMWLP 143
+ A+ +GE+ V ++ F+GY PE + + GW+ T DV +W P
Sbjct: 343 EIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGWYRTSDVAVWTP 391
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
+ R + G AP+ L + A V++GY TE TL + D + G
Sbjct: 285 DFRYFITGGAPMP-EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDAL-RKAGSAGRA 342
Query: 86 CSVKLVDVPEMDYFAHE-GKGEVCVRGNNVFLGYFKDPEL--NSIDELGWHHTGDVG 139
V V D E G+GEV ++ + + Y+ PE ++ D GW TGD+G
Sbjct: 343 TMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIG 398
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 97 DYFAHEGKGEVCVRGNN-VFLGYFKDPELNSID-ELGWHHTGDVGMWLP 143
+ A+ +GE+ V ++ F+GY P+ + + GW+ T DV +W P
Sbjct: 343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 97 DYFAHEGKGEVCVRGNN-VFLGYFKDPELNSID-ELGWHHTGDVGMWLP 143
+ A+ +GE+ V ++ F+GY P+ + + GW+ T DV +W P
Sbjct: 343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 97 DYFAHEGKGEVCVRGNN-VFLGYFKDPELNSID-ELGWHHTGDVGMWLP 143
+ A+ +GE+ V ++ F+GY P+ + + GW+ T DV +W P
Sbjct: 343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 97 DYFAHEGKGEVCVRGNN-VFLGYFKDPELNSID-ELGWHHTGDVGMWLP 143
+ A+ +GE+ V ++ F+GY P+ + + GW+ T DV +W P
Sbjct: 343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 97 DYFAHEGKGEVCVRGNN-VFLGYFKDPELNSID-ELGWHHTGDVGMWLP 143
+ A+ +GE+ V ++ F+GY P+ + + GW+ T DV +W P
Sbjct: 343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 54 IEGYGQTE---CVAPITLTIQ--GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVC 108
I YG TE C T + G VP +G PI + +VD + + GE+C
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVP--IGAPIQNTQIYIVD-ENLQLKSVGEAGELC 376
Query: 109 VRGNNVFLGYFKDPELNS---IDE-----LGWHHTGDVGMWL 142
+ G + GY+K PEL S +D + TGD WL
Sbjct: 377 IGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWL 418
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS----IDELG--WH 133
G P +K++ + + GE+ +RG N+F GY+K + N DE G +
Sbjct: 359 GVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418
Query: 134 HTGDVGMWLPTLFFFFIPMLVIMLMY 159
TGDVG F F + ++ Y
Sbjct: 419 RTGDVGFIDEEGFLHFQDRVKEVIKY 444
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 53 VIEGYGQTECVAP-----ITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEV 107
+I YG TE IT + +Y +G P ++D + + E +GE+
Sbjct: 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGE-QGEI 351
Query: 108 CVRGNNVFLGYFKDPELNSIDELGW-----HHTGDVG 139
V G V GY +PE + + +HTGD+G
Sbjct: 352 IVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG 388
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 105 GEVCVRGNNVFLGYFKDP-ELNSIDELGWHHTGDVGMWL 142
G +C+ G ++ GYF D + I GW TGD+G L
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL 449
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 53 VIEGYGQTEC-VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYF--AHEG------ 103
+ YG TE VA ++ I D + P+ P+M+ F EG
Sbjct: 289 IFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAK------PDMNIFIMDEEGQPLPEG 342
Query: 104 -KGEVCVRGNNVFLGYFKDPELNS----IDELGW-HHTGDVGM 140
KGE+ + G +V GY +PEL E W + TGD G
Sbjct: 343 EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF 385
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 18/138 (13%)
Query: 21 EDMGGNLR-LMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV 79
ED LR ++ G +V LR +I YG TE T + D +P+ +
Sbjct: 716 EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHD-LPDSI 774
Query: 80 -----GPPICCCSVKLV-DVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--- 130
G PI SV ++ + ++ F GE+C+ G V GY +L +
Sbjct: 775 SSLPIGKPISNASVYILNEQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENP 832
Query: 131 -----GWHHTGDVGMWLP 143
+ TGD+ WLP
Sbjct: 833 FKPGETLYRTGDLARWLP 850
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSI 195
F FF +LV +L+ + LRI + +R L + + GE RS +K +
Sbjct: 180 FNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERARSTLQKEV 229
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 145 LFFFFIPMLVIMLMYTRIGLRIRS 168
+F F IP+L+I++ YT + LR++S
Sbjct: 195 IFAFVIPVLIIIVCYTLMILRLKS 218
>pdb|3P05|A Chain A, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|B Chain B, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|C Chain C, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|D Chain D, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|E Chain E, X-Ray Structure Of Pentameric Hiv-1 Ca
Length = 231
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 PITLTIQGDYVPEHVGPPICCCSVKLVD 92
PI +QG V + + P CC VK+V+
Sbjct: 1 PIVQNLQGQMVHQAISPRTLCCWVKVVE 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.144 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,230,732
Number of Sequences: 62578
Number of extensions: 262869
Number of successful extensions: 548
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 47
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)