Query psy14311
Match_columns 199
No_of_seqs 144 out of 1698
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 16:39:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3etc_A AMP-binding protein; ad 100.0 1.2E-39 4E-44 279.8 12.6 182 2-193 318-505 (580)
2 4fuq_A Malonyl COA synthetase; 100.0 1.6E-39 5.3E-44 274.7 10.4 183 2-193 244-429 (503)
3 3ni2_A 4-coumarate:COA ligase; 100.0 6.9E-39 2.4E-43 272.6 14.3 183 2-193 273-464 (536)
4 3rix_A Luciferase, luciferin 4 100.0 3.8E-39 1.3E-43 274.9 11.8 183 2-193 283-469 (550)
5 2d1s_A Luciferase, luciferin 4 100.0 1.8E-38 6.3E-43 270.7 12.3 182 3-193 286-471 (548)
6 3c5e_A Acyl-coenzyme A synthet 100.0 2.6E-38 8.7E-43 271.0 11.2 182 2-193 299-486 (570)
7 3g7s_A Long-chain-fatty-acid-- 100.0 2E-37 6.9E-42 264.3 15.2 183 2-193 270-469 (549)
8 3nyq_A Malonyl-COA ligase; A/B 100.0 5.5E-38 1.9E-42 265.4 10.1 182 2-193 245-436 (505)
9 1v25_A Long-chain-fatty-acid-C 100.0 4.7E-37 1.6E-41 261.6 13.7 181 2-193 269-465 (541)
10 3o83_A Peptide arylation enzym 100.0 1.2E-37 4E-42 265.5 9.9 182 2-193 283-469 (544)
11 1pg4_A Acetyl-COA synthetase; 100.0 3.7E-37 1.3E-41 267.5 13.2 182 2-193 352-547 (652)
12 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.6E-37 5.5E-42 264.4 10.5 182 2-193 274-460 (539)
13 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-37 8.7E-42 262.5 11.2 182 2-193 276-459 (529)
14 3ite_A SIDN siderophore synthe 100.0 7.4E-37 2.5E-41 261.3 12.4 176 2-189 274-453 (562)
15 4gr5_A Non-ribosomal peptide s 100.0 7.9E-37 2.7E-41 261.7 11.7 180 2-193 305-499 (570)
16 3tsy_A Fusion protein 4-coumar 100.0 1.5E-36 5.2E-41 273.8 13.5 184 2-194 320-512 (979)
17 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.3E-36 4.6E-41 256.7 11.7 179 2-193 246-432 (504)
18 3r44_A Fatty acyl COA syntheta 100.0 1.6E-36 5.3E-41 257.2 11.9 180 2-193 260-443 (517)
19 3l8c_A D-alanine--poly(phospho 100.0 6.2E-37 2.1E-41 259.6 8.5 181 3-193 241-433 (521)
20 4dg8_A PA1221; ANL superfamily 100.0 4E-36 1.4E-40 259.6 12.1 180 2-193 255-449 (620)
21 1ry2_A Acetyl-coenzyme A synth 100.0 1.7E-36 5.7E-41 263.9 9.3 183 2-193 358-556 (663)
22 3fce_A D-alanine--poly(phospho 100.0 2.4E-36 8.4E-41 255.5 9.9 181 2-193 237-429 (512)
23 3e7w_A D-alanine--poly(phospho 100.0 6.6E-36 2.3E-40 252.9 12.3 181 2-193 236-428 (511)
24 3rg2_A Enterobactin synthase c 100.0 5.1E-36 1.7E-40 258.9 11.3 183 2-194 276-465 (617)
25 1amu_A GRSA, gramicidin synthe 100.0 6.1E-36 2.1E-40 255.9 9.9 174 3-193 276-460 (563)
26 3gqw_A Fatty acid AMP ligase; 100.0 1.9E-35 6.7E-40 252.7 11.0 180 3-193 273-491 (576)
27 3ivr_A Putative long-chain-fat 100.0 3.4E-35 1.2E-39 248.3 9.6 177 2-193 250-430 (509)
28 3ipl_A 2-succinylbenzoate--COA 100.0 1.4E-34 4.7E-39 244.1 12.0 174 2-193 253-428 (501)
29 3kxw_A Saframycin MX1 syntheta 100.0 7.9E-35 2.7E-39 249.8 8.0 176 3-190 263-486 (590)
30 2vsq_A Surfactin synthetase su 100.0 5.7E-34 1.9E-38 263.2 11.7 180 2-193 699-891 (1304)
31 3qov_A Phenylacetate-coenzyme 100.0 1.3E-30 4.5E-35 216.4 11.7 168 2-192 180-360 (436)
32 2y27_A Phenylacetate-coenzyme 100.0 1.1E-29 3.9E-34 210.8 12.6 169 2-192 184-362 (437)
33 2y4o_A Phenylacetate-coenzyme 100.0 9.4E-30 3.2E-34 211.6 11.9 169 2-192 186-364 (443)
34 3t5a_A Long-chain-fatty-acid-- 100.0 3.7E-29 1.3E-33 209.5 9.9 145 4-150 285-478 (480)
35 4gs5_A Acyl-COA synthetase (AM 100.0 5E-29 1.7E-33 202.4 9.1 155 2-192 125-282 (358)
36 3hgu_A EHPF; phenazine, antibi 99.8 8E-20 2.7E-24 148.4 6.7 152 3-171 208-368 (369)
37 4eql_A 4-substituted benzoates 98.6 2.3E-07 7.7E-12 79.1 10.3 136 22-186 294-448 (581)
38 4b2g_A GH3-1 auxin conjugating 98.6 1.3E-07 4.4E-12 80.8 8.5 134 22-184 299-458 (609)
39 4epl_A Jasmonic acid-amido syn 98.4 9.2E-07 3.1E-11 75.3 7.7 135 22-184 299-453 (581)
40 3lax_A Phenylacetate-coenzyme 98.1 3.1E-07 1.1E-11 61.3 0.0 34 160-193 1-34 (109)
41 3gxs_A Phenylacetate-coenzyme 98.0 5.9E-07 2E-11 60.0 0.0 32 160-191 1-32 (109)
42 3e8v_A Possible transglutamina 46.4 41 0.0014 20.6 4.5 14 86-100 3-16 (82)
No 1
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.2e-39 Score=279.83 Aligned_cols=182 Identities=21% Similarity=0.267 Sum_probs=163.2
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP 81 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~ 81 (199)
+.++++|++++.|+........+++||.+++||+++++++.++|.+.+++++++.||+||++..++........++++|+
T Consensus 318 t~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~ 397 (580)
T 3etc_A 318 TTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGK 397 (580)
T ss_dssp CEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBE
T ss_pred eEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcccc
Confidence 45678999999998765555667899999999999999999999999999999999999998877766555567789999
Q ss_pred cccCcEEEEEeCCCCcccCCCCcceEEEec-----CcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311 82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRG-----NNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVI 155 (199)
Q Consensus 82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~-----~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~ 155 (199)
|+++++++|+| ++++++++|+.|||++++ ++++.||+++|+.+. .+.+|||+|||+|++|+||+|+|+
T Consensus 398 p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~----- 471 (580)
T 3etc_A 398 PTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFV----- 471 (580)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE-----
T ss_pred CCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEE-----
Confidence 99999999999 779999999999999996 789999999999988 556899999999999999999999
Q ss_pred eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus 472 ----GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~V 505 (580)
T 3etc_A 472 ----GRADDIIKTSGYKVGPFEVESALIQHPAVLECAI 505 (580)
T ss_dssp ----EESSSCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred ----ecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence 9999999999999999999999999999987643
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.6e-39 Score=274.73 Aligned_cols=183 Identities=24% Similarity=0.355 Sum_probs=163.9
Q ss_pred CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG 80 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G 80 (199)
+.++++|+++..|+.... .....+++|.+++||+++++++.+.|.+.+++.+++.||+||++..++........++++|
T Consensus 244 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G 323 (503)
T 4fuq_A 244 TVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323 (503)
T ss_dssp CEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEE
T ss_pred CEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccc
Confidence 346789999999986643 3344578999999999999999999999999999999999999876554444445678899
Q ss_pred ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311 81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM 158 (199)
Q Consensus 81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~ 158 (199)
+|+++++++|+|++++++++.|+.|||+++||+++.|||++|+.+. +..+|||+|||++++|++|+++++
T Consensus 324 ~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~-------- 395 (503)
T 4fuq_A 324 PALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHIL-------- 395 (503)
T ss_dssp EBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEEC--------
T ss_pred cCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEE--------
Confidence 9999999999998999999999999999999999999999999887 667899999999999999999999
Q ss_pred eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus 396 -GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 429 (503)
T 4fuq_A 396 -GRGKDLVITGGFNVYPKEIESEIDAMPGVVESAV 429 (503)
T ss_dssp -CSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred -ecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence 9999999999999999999999999999987654
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=6.9e-39 Score=272.60 Aligned_cols=183 Identities=23% Similarity=0.375 Sum_probs=163.5
Q ss_pred CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecc-----cCCc
Q psy14311 2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTI-----QGDY 74 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~-----~~~~ 74 (199)
+.++++|+++..|+.... ....+++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++... ....
T Consensus 273 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 352 (536)
T 3ni2_A 273 SIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDI 352 (536)
T ss_dssp CEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCC
T ss_pred eEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccC
Confidence 346789999999986643 344568999999999999999999999998 899999999999998665442 1223
Q ss_pred cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311 75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPM 152 (199)
Q Consensus 75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r 152 (199)
.++++|+|+++++++|+|++++++++.|+.|||+++|++++.|||++|+.+. +..+|||+|||++++|+||+++++
T Consensus 353 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~-- 430 (536)
T 3ni2_A 353 KPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIV-- 430 (536)
T ss_dssp CTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE--
T ss_pred CCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEE--
Confidence 5688999999999999998899999999999999999999999999999887 668999999999999999999999
Q ss_pred eeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 153 LVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 153 ~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus 431 -------GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~V 464 (536)
T 3ni2_A 431 -------DRLKELIKYKGFQVAPAELEALLIAHPEISDAAV 464 (536)
T ss_dssp -------EECSCCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred -------ecccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9999999999999999999999999999987654
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.8e-39 Score=274.95 Aligned_cols=183 Identities=25% Similarity=0.408 Sum_probs=134.3
Q ss_pred CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCc-EEeecccccCCCceeecccCCccCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHV 79 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~ 79 (199)
+.++++|+++..|+..... ...+++||.+++||+++++++.+++.+.++.. +++.||+||++..++.........+++
T Consensus 283 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 283 QSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp SEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred eEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 3567899999999876543 34568999999999999999999999999875 999999999998877766656677899
Q ss_pred CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311 80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIML 157 (199)
Q Consensus 80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~ 157 (199)
|+|+++++++|+|++++++++.|+.|||+++||+++.|||++|+.+. +..+|||+|||++++|++|+++++
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~------- 435 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV------- 435 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------
T ss_pred ccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEE-------
Confidence 99999999999998899999999999999999999999999999887 668999999999999999999999
Q ss_pred EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 436 --GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 469 (550)
T 3rix_A 436 --DRLKSLIKYKGYQVAPAELESILLQHPNIFDAGV 469 (550)
T ss_dssp ------------------------------------
T ss_pred --ecchheeEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9999999999999999999999999999987654
No 5
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.8e-38 Score=270.74 Aligned_cols=182 Identities=26% Similarity=0.393 Sum_probs=163.1
Q ss_pred ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311 3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHVG 80 (199)
Q Consensus 3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G 80 (199)
.++++|+++..|+..... ...+++||.+++||+++++++.+++.+.| ++.+++.||+||++..++.........+++|
T Consensus 286 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G 365 (548)
T 2d1s_A 286 SVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASG 365 (548)
T ss_dssp EEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCB
T ss_pred EEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCC
Confidence 467899999999865432 34568899999999999999999999999 6889999999999987766544445678999
Q ss_pred ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311 81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM 158 (199)
Q Consensus 81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~ 158 (199)
+|+++++++|+|+++++++++|+.|||+++||+++.|||++|+.+. +..+|||+|||++++|++|++++.
T Consensus 366 ~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~-------- 437 (548)
T 2d1s_A 366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIV-------- 437 (548)
T ss_dssp EECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEE--------
T ss_pred ccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEe--------
Confidence 9999999999998899999999999999999999999999999887 557899999999999999999999
Q ss_pred eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 438 -GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V 471 (548)
T 2d1s_A 438 -DRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471 (548)
T ss_dssp -EEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEE
T ss_pred -ccccceEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence 9999999999999999999999999999986544
No 6
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.6e-38 Score=271.03 Aligned_cols=182 Identities=19% Similarity=0.244 Sum_probs=162.5
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP 81 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~ 81 (199)
+.++++|++++.|+........+++||.++++|+++++++.++|.+.+++.+++.||+||++..++........++++|+
T Consensus 299 t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 378 (570)
T 3c5e_A 299 KSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGT 378 (570)
T ss_dssp CEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCE
T ss_pred eEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccc
Confidence 45678999999998765444556889999999999999999999998999999999999998766554443456789999
Q ss_pred cccCcEEEEEeCCCCcccCCCCcceEEEe-----cCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311 82 PICCCSVKLVDVPEMDYFAHEGKGEVCVR-----GNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVI 155 (199)
Q Consensus 82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~-----~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~ 155 (199)
|+++++++|+| +++++++.|+.|||+++ |++++.||+++|+.+. .+.++||+|||++++|++|+++|+
T Consensus 379 p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~----- 452 (570)
T 3c5e_A 379 AASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFM----- 452 (570)
T ss_dssp ECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEE-----
T ss_pred cCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEE-----
Confidence 99999999999 77999999999999999 9999999999999887 445899999999999999999999
Q ss_pred eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus 453 ----GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~V 486 (570)
T 3c5e_A 453 ----GRADDIINSSGYRIGPSEVENALMEHPAVVETAV 486 (570)
T ss_dssp ----EEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred ----ecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9999999999999999999999999999987654
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2e-37 Score=264.26 Aligned_cols=183 Identities=20% Similarity=0.218 Sum_probs=150.1
Q ss_pred CccccchhHHHHHHHhhhhh---ccCCceeEEEEecCCCCHHHHHHHHHH----hC---CcEEeecccccCCCceeeccc
Q psy14311 2 KGIYRRNSIWDKLVFKKVQE---DMGGNLRLMLAGSAPLAGNVLTFLRCA----LG---CLVIEGYGQTECVAPITLTIQ 71 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~---~~~~slr~i~~~G~~~~~~~~~~~~~~----~~---~~i~~~yG~tE~~~~~~~~~~ 71 (199)
+.++++|+++..|+...... ..++++|.+++||+++++++.+++.+. ++ +.+++.||+||++.+++....
T Consensus 270 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 349 (549)
T 3g7s_A 270 TFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP 349 (549)
T ss_dssp CEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG
T ss_pred eEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc
Confidence 34678999999998664433 345889999999999999999999988 56 889999999999987776544
Q ss_pred CC-ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C--CCCC--eeecCceEEEcCC
Q psy14311 72 GD-YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I--DELG--WHHTGDVGMWLPT 144 (199)
Q Consensus 72 ~~-~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~--~~~g--~~~TGD~~~~d~~ 144 (199)
.. ....++|+|+++++++|+|++++++++.|+.|||+++||+++.|||++|+.+. + +.+| ||+|||++++|++
T Consensus 350 ~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~d 429 (549)
T 3g7s_A 350 LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE 429 (549)
T ss_dssp GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTT
T ss_pred cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCC
Confidence 32 46688999999999999998999999999999999999999999999999887 2 2677 9999999999999
Q ss_pred CeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 145 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 145 g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
|+++|+ ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus 430 G~l~~~---------GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~V 469 (549)
T 3g7s_A 430 GFLHFQ---------DRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAV 469 (549)
T ss_dssp SCEEEE---------EEC------------CHHHHHHHTTSTTEEEEEE
T ss_pred ceEEEe---------ccccceEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence 999999 9999999999999999999999999999987654
No 8
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.5e-38 Score=265.41 Aligned_cols=182 Identities=23% Similarity=0.335 Sum_probs=156.5
Q ss_pred CccccchhHHHHHHHh----hhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCC
Q psy14311 2 KGIYRRNSIWDKLVFK----KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~----~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~ 77 (199)
+.++++|+++..|+.. +.....++++|.+++||+++++++.+++.+.+++++++.||+||++..++.........+
T Consensus 245 t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 324 (505)
T 3nyq_A 245 TMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAG 324 (505)
T ss_dssp CEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTT
T ss_pred eEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCC
Confidence 3567899999998863 222334577999999999999999999999999999999999999876666555555678
Q ss_pred CCCccccCcEEEEEeCCCCcccCC---CCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311 78 HVGPPICCCSVKLVDVPEMDYFAH---EGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPM 152 (199)
Q Consensus 78 ~~G~p~~~~~~~v~d~~~~~~~~~---g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r 152 (199)
++|+|+++++++|+| +++++++. |+.|||+++|++++.|||++|+.+. +..++||+|||++++|++|++++.
T Consensus 325 ~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~-- 401 (505)
T 3nyq_A 325 TVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV-- 401 (505)
T ss_dssp CCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE--
T ss_pred CcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe--
Confidence 999999999999999 77888876 8999999999999999999999887 667999999999999999999999
Q ss_pred eeeeeEeeec-CeEEEecceecccccccccccCCcccccccc
Q psy14311 153 LVIMLMYTRI-GLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 153 ~~~~~~~gR~-~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||. |++||.+|++|+|.|||++|.+||.|.++..
T Consensus 402 -------GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~V 436 (505)
T 3nyq_A 402 -------GRKATDLIKSGGYKIGAGEIENALLEHPEVREAAV 436 (505)
T ss_dssp -------EESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred -------CCccCceEEeCCEEECHHHHHHHHHHCcCccEEEE
Confidence 997 5899999999999999999999999987654
No 9
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.7e-37 Score=261.62 Aligned_cols=181 Identities=19% Similarity=0.272 Sum_probs=148.2
Q ss_pred CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-------
Q psy14311 2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD------- 73 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~------- 73 (199)
+.++++|+++..|+..... ...+++||.+++||+++++++.++| +.+++++++.||+||++.+++......
T Consensus 269 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 347 (541)
T 1v25_A 269 TFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSE 347 (541)
T ss_dssp CEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred eEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCc
Confidence 3567899999999865433 3456889999999999999999999 667999999999999998766553321
Q ss_pred ----ccCCCCCccccCcEEEEEeCCCCcccCC-C-CcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCC
Q psy14311 74 ----YVPEHVGPPICCCSVKLVDVPEMDYFAH-E-GKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTL 145 (199)
Q Consensus 74 ----~~~~~~G~p~~~~~~~v~d~~~~~~~~~-g-~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g 145 (199)
...+++|+|+++++++|+| +++++++. | +.|||+++||+++.|||++|+.+. +..+|||+|||+|++|++|
T Consensus 348 ~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG 426 (541)
T 1v25_A 348 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEG 426 (541)
T ss_dssp HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTC
T ss_pred cccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCc
Confidence 1347899999999999999 77888885 3 689999999999999999999887 5568999999999999999
Q ss_pred eEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 146 ~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
+++|+ ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 427 ~l~~~---------GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V 465 (541)
T 1v25_A 427 YVEIK---------DRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV 465 (541)
T ss_dssp CEEEE---------EESSCEEEETTEEEEHHHHHCC----------CE
T ss_pred eEEEe---------ecccceeeeCCEEECHHHHHHHHHhCCCceEEEE
Confidence 99999 9999999999999999999999999999987654
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.2e-37 Score=265.54 Aligned_cols=182 Identities=21% Similarity=0.243 Sum_probs=131.3
Q ss_pred CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-ccCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD-YVPEHV 79 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~ 79 (199)
+.++++|+++..|+..... ...+++||.+++||+++++++.+++.+.+++.+++.||+||++..++...... ....++
T Consensus 283 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 362 (544)
T 3o83_A 283 NMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQ 362 (544)
T ss_dssp CEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCC
T ss_pred CEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCC
Confidence 3567899999999866432 34457899999999999999999999999999999999999875443322211 234689
Q ss_pred Cccc-cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311 80 GPPI-CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIM 156 (199)
Q Consensus 80 G~p~-~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~ 156 (199)
|+|+ ++++++|+| +++++++.|+.|||+++||+++.|||++|+.+. +..++||+|||++++|++|+++|+
T Consensus 363 G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~------ 435 (544)
T 3o83_A 363 GRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVV------ 435 (544)
T ss_dssp CEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEE------
T ss_pred ceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEE------
Confidence 9996 899999999 889999999999999999999999999999887 668999999999999999999999
Q ss_pred eEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus 436 ---GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 469 (544)
T 3o83_A 436 ---GRIKDQINRGGEKIASEEIEKLILLHPEVMHAAL 469 (544)
T ss_dssp ---EEEC------------------------------
T ss_pred ---eecCCEEEeCCEEECHHHHHHHHHhCCCccEEEE
Confidence 9999999999999999999999999999987654
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.7e-37 Score=267.49 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=160.0
Q ss_pred CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeeccc--CC
Q psy14311 2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQ--GD 73 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~--~~ 73 (199)
+.++++|++++.|+.... ...++++||.++++|+++++++++++.+.++ +.+++.||+||++..++.... ..
T Consensus 352 t~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 431 (652)
T 1pg4_A 352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIE 431 (652)
T ss_dssp SEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCC
T ss_pred eEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcC
Confidence 456789999999986542 2345689999999999999999999999987 899999999999976655432 23
Q ss_pred ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEec--CcccccccCCCcCCC--C--CCCCeeecCceEEEcCCCeE
Q psy14311 74 YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG--NNVFLGYFKDPELNS--I--DELGWHHTGDVGMWLPTLFF 147 (199)
Q Consensus 74 ~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~--~--~~~g~~~TGD~~~~d~~g~l 147 (199)
..++++|+|+++++++|+| +++++++.|+.|||+++| |+++.|||++|+.+. + ..+|||+|||++++|+||+|
T Consensus 432 ~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l 510 (652)
T 1pg4_A 432 LKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYY 510 (652)
T ss_dssp BCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCE
T ss_pred ccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcE
Confidence 4678999999999999999 789999999999999999 789999999998775 2 34789999999999999999
Q ss_pred EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
+|+ ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus 511 ~i~---------GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V 547 (652)
T 1pg4_A 511 WIT---------GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547 (652)
T ss_dssp EEE---------EESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred EEE---------ecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 999 9999999999999999999999999999987654
No 12
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.6e-37 Score=264.41 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=156.9
Q ss_pred CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHV 79 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~ 79 (199)
+.++++|+++..|+..... ...+++||.+++||+++++++.+++++.+++.+++.||+||++..+...... ....+++
T Consensus 274 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 353 (539)
T 1mdb_A 274 TITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ 353 (539)
T ss_dssp SEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCC
T ss_pred eEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCC
Confidence 3567899999999866433 3456899999999999999999999999999999999999965433221111 1234789
Q ss_pred CccccC-cEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311 80 GPPICC-CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIM 156 (199)
Q Consensus 80 G~p~~~-~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~ 156 (199)
|+|+++ .+++|+| +++++++.|+.|||+++||+++.|||++|+.+. +..+|||+|||+|++|++|+++|.
T Consensus 354 G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~------ 426 (539)
T 1mdb_A 354 GKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVE------ 426 (539)
T ss_dssp CEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE------
T ss_pred CcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEe------
Confidence 999976 4899999 789999999999999999999999999999887 667999999999999999999999
Q ss_pred eEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus 427 ---GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 460 (539)
T 1mdb_A 427 ---GRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (539)
T ss_dssp ---EEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred ---ccccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9999999999999999999999999999987644
No 13
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-37 Score=262.46 Aligned_cols=182 Identities=14% Similarity=0.213 Sum_probs=155.8
Q ss_pred CccccchhHHHHHHHhhhhhcc-CCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDM-GGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG 80 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~-~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G 80 (199)
+.++++|+++..++........ ..++|.+++||+++++++.+.+++.+++++++.||+||++.+++.........+++|
T Consensus 276 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G 355 (529)
T 2v7b_A 276 TVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTG 355 (529)
T ss_dssp SEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCC
T ss_pred EEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcc
Confidence 3567899999998864322211 247999999999999999999999999999999999999876655544445668899
Q ss_pred ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311 81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY 159 (199)
Q Consensus 81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~ 159 (199)
+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+. .+.++||+|||++++|++|++++.
T Consensus 356 ~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~--------- 425 (529)
T 2v7b_A 356 RPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYA--------- 425 (529)
T ss_dssp EECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE---------
T ss_pred cCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEe---------
Confidence 999999999999 789999999999999999999999999999887 445899999999999999999999
Q ss_pred eecCeEEEecceecccccccccccCCcccccccc
Q psy14311 160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 426 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~v 459 (529)
T 2v7b_A 426 GRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV 459 (529)
T ss_dssp EEGGGCBC----CBCHHHHHHHHTTSTTEEEEEE
T ss_pred CccCCeEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9999999999999999999999999999986643
No 14
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=7.4e-37 Score=261.29 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=128.5
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-CCccCCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-GDYVPEHVG 80 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G 80 (199)
+.++++|++++.+.. ....+++||.+++||+++++++.+.|++.+++.+++.||+||++..++.... ......++|
T Consensus 274 t~~~~~P~~l~~~~~---~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G 350 (562)
T 3ite_A 274 THAGIVPSLLDQTGL---VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIG 350 (562)
T ss_dssp CEEEECHHHHHHHTC---CGGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEE
T ss_pred CEEEcCHHHHhhccc---CccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCcccc
Confidence 346788998877642 2345678999999999999999999999889999999999999886665433 334567899
Q ss_pred ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCC--eeecCceEEEcCCCeEEEEeeeeeee
Q psy14311 81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELG--WHHTGDVGMWLPTLFFFFIPMLVIML 157 (199)
Q Consensus 81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g--~~~TGD~~~~d~~g~l~~~~r~~~~~ 157 (199)
+|+++++++++|+++++++++|+.|||+++||+++.|||++|+.+. ...+| ||+|||++++|++|+|+|+
T Consensus 351 ~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~------- 423 (562)
T 3ite_A 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFL------- 423 (562)
T ss_dssp EECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEE-------
T ss_pred ccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEE-------
Confidence 9999999999998889999999999999999999999999999887 33345 9999999999999999999
Q ss_pred EeeecCeEEEecceecccccccccccCCcccc
Q psy14311 158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRS 189 (199)
Q Consensus 158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~ 189 (199)
||.+|+||++|++|+|.|||++|.+|+.+.
T Consensus 424 --GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~ 453 (562)
T 3ite_A 424 --GRKDEQVKVRGQRLELGEVSEVIRSLSPTD 453 (562)
T ss_dssp --EEC---------------------------
T ss_pred --ccccCEEeECcEEECHHHHHHHHHhcCCCc
Confidence 999999999999999999999999984443
No 15
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.9e-37 Score=261.71 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=126.5
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC----CccC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG----DYVP 76 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~----~~~~ 76 (199)
+.++++|+++..|+.... ..+++||.+++||++++++..+.+.+.+ ++.+++.||+||++++++..... ....
T Consensus 305 t~~~~~P~~~~~l~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~ 382 (570)
T 4gr5_A 305 TMLQLSASLFNFLVDEVP--EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA 382 (570)
T ss_dssp CEEEEEHHHHHHHHHHCG--GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSS
T ss_pred cEEEecHHHHHHHHhhch--hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCc
Confidence 356789999999885432 3457899999999999999999998887 78999999999998866654321 2244
Q ss_pred CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC--------CCCeeecCceEEEcCCCe
Q psy14311 77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID--------ELGWHHTGDVGMWLPTLF 146 (199)
Q Consensus 77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~--------~~g~~~TGD~~~~d~~g~ 146 (199)
.++|+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+. +. .++||+|||+|++|++|+
T Consensus 383 ~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~ 461 (570)
T 4gr5_A 383 LPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGV 461 (570)
T ss_dssp CCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSC
T ss_pred cccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCe
Confidence 6799999999999999 789999999999999999999999999998876 21 247999999999999999
Q ss_pred EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
|+|+ ||++|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 462 l~~~---------GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~V 499 (570)
T 4gr5_A 462 LEYV---------GRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAV 499 (570)
T ss_dssp EEEE---------EC--------------------------------
T ss_pred EEEE---------cccCCEEEECcEEeCHHHHHHHHhcCCCcceEEE
Confidence 9999 9999999999999999999999999999987654
No 16
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.5e-36 Score=273.84 Aligned_cols=184 Identities=21% Similarity=0.344 Sum_probs=136.3
Q ss_pred CccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecc-----cCCc
Q psy14311 2 KGIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTI-----QGDY 74 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~-----~~~~ 74 (199)
+.++++|+++..|+...... ..+++||.+++||+++++++.+++.+.| ++++++.||+||++.+++... ....
T Consensus 320 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp CEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred eEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 34678999999998765433 4468999999999999999999999998 899999999999998665542 1223
Q ss_pred cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311 75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPM 152 (199)
Q Consensus 75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r 152 (199)
..+++|+|+++++++|+|+++++++++|+.|||+++||+++.|||++|+.+. +..++||+|||++++|++|+++|+
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~-- 477 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIV-- 477 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE--
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEe--
Confidence 5678999999999999998899999999999999999999999999999887 668999999999999999999999
Q ss_pred eeeeeEeeecCeEEEecceecccccccccccCCccccccccc
Q psy14311 153 LVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS 194 (199)
Q Consensus 153 ~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~ 194 (199)
||.||+||.+|++|+|.|||++|.+||.|.++...
T Consensus 478 -------GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv 512 (979)
T 3tsy_A 478 -------DRLKELIKYKGFQVAPAELEALLIGHPDITDVAVV 512 (979)
T ss_dssp -------EESCC------------------------------
T ss_pred -------cCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 99999999999999999999999999999876543
No 17
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.3e-36 Score=256.71 Aligned_cols=179 Identities=19% Similarity=0.234 Sum_probs=156.3
Q ss_pred CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH 78 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~ 78 (199)
+.++++|+++..|+.... ....+++||.+++||+++++++.++|++.++..+++.||+||++ .+.... ....++
T Consensus 246 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--~~~~~~ 322 (504)
T 1t5h_X 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR--QPKTGT 322 (504)
T ss_dssp CEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--SCSSSS
T ss_pred eEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--CCCCCc
Confidence 456789999999986642 23345889999999999999999999999999999999999993 232222 345678
Q ss_pred CCccccCcEEEEEeCCCC---cccCCCCcceEEEe-cCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeee
Q psy14311 79 VGPPICCCSVKLVDVPEM---DYFAHEGKGEVCVR-GNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPML 153 (199)
Q Consensus 79 ~G~p~~~~~~~v~d~~~~---~~~~~g~~Gel~i~-~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~ 153 (199)
+|+|.++++++++| +.+ ++++.|+.|||+++ |+.++.||+++|+.+. .+.+|||+|||++++|+||+++|.
T Consensus 323 ~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~--- 398 (504)
T 1t5h_X 323 EMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRIL--- 398 (504)
T ss_dssp EEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE---
T ss_pred cccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEe---
Confidence 99999999999999 555 89999999999999 9999999999999887 446899999999999999999999
Q ss_pred eeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 154 VIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 154 ~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 399 ------GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~V 432 (504)
T 1t5h_X 399 ------GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432 (504)
T ss_dssp ------EEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred ------CcccCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9999999999999999999999999999987544
No 18
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.6e-36 Score=257.16 Aligned_cols=180 Identities=19% Similarity=0.237 Sum_probs=159.9
Q ss_pred CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC--CccCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG--DYVPEH 78 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~ 78 (199)
+.++++|++++.|...+. ....+++||.+++||+++++++.+.+.+. ++++++.||+||+++.++..... ....++
T Consensus 260 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 338 (517)
T 3r44_A 260 CIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGS 338 (517)
T ss_dssp CEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTC
T ss_pred eEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCC
Confidence 346789999999986643 34456889999999999999999999987 99999999999998866654332 346688
Q ss_pred CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311 79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIML 157 (199)
Q Consensus 79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~ 157 (199)
+|+|.++++++++| +++.+++.| .|||+++||+++.|||++|+.+. .+.++||+|||++++|++|+++|+
T Consensus 339 ~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~------- 409 (517)
T 3r44_A 339 AGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIK------- 409 (517)
T ss_dssp CBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEE-------
T ss_pred CCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEe-------
Confidence 99999999999999 788999999 89999999999999999999887 567899999999999999999999
Q ss_pred EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus 410 --GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~V 443 (517)
T 3r44_A 410 --DRLKDMIISGGENVYPAEIESVIIGVPGVSEVAV 443 (517)
T ss_dssp --ECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred --cCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEE
Confidence 9999999999999999999999999999987654
No 19
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=6.2e-37 Score=259.59 Aligned_cols=181 Identities=17% Similarity=0.194 Sum_probs=153.0
Q ss_pred ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-----Ccc
Q psy14311 3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-----DYV 75 (199)
Q Consensus 3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-----~~~ 75 (199)
.++++|+++..++.... ....++++|.++++|+++++++.+++.+.+ ++++++.||+||++..++..... ...
T Consensus 241 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~ 320 (521)
T 3l8c_A 241 IWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYT 320 (521)
T ss_dssp EEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCS
T ss_pred EEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCC
Confidence 46789999988875532 334458899999999999999999999988 89999999999998866543321 124
Q ss_pred CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEEE
Q psy14311 76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFFI 150 (199)
Q Consensus 76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~~ 150 (199)
..++|+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+. + ..++||+|||+|++|++|++++.
T Consensus 321 ~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~ 399 (521)
T 3l8c_A 321 RLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYG 399 (521)
T ss_dssp SCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEE
T ss_pred ccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEe
Confidence 56799999999999999 789999999999999999999999999999886 2 45789999999999999999999
Q ss_pred eeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 151 PMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 151 ~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 400 ---------GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~v 433 (521)
T 3l8c_A 400 ---------GRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVA 433 (521)
T ss_dssp ---------EEGGGBCC-----CBHHHHHHHHHTSTTEEEEEE
T ss_pred ---------CcccceEeECCEEeCHHHHHHHHHcCCCcceEEE
Confidence 9999999999999999999999999999986543
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=4e-36 Score=259.65 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=153.4
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC----CccC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG----DYVP 76 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~----~~~~ 76 (199)
+.++++|++++.|+... ...+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++..... ....
T Consensus 255 t~~~~~Ps~~~~l~~~~--~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 332 (620)
T 4dg8_A 255 DSAWLTASLFNTLVDLD--PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD 332 (620)
T ss_dssp CEEEEEHHHHHHHHHHC--GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS
T ss_pred cEEEccHHHHHHHHhcC--hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC
Confidence 34678999999987542 34457899999999999988888877766 78999999999999866543221 2345
Q ss_pred CCCCccccCcEEEEEeCCCCcc-cCCCCcceEEEecCcccccccCCCcCCC--CCCC-------CeeecCceEEEcCCCe
Q psy14311 77 EHVGPPICCCSVKLVDVPEMDY-FAHEGKGEVCVRGNNVFLGYFKDPELNS--IDEL-------GWHHTGDVGMWLPTLF 146 (199)
Q Consensus 77 ~~~G~p~~~~~~~v~d~~~~~~-~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~-------g~~~TGD~~~~d~~g~ 146 (199)
.++|+|+++++++|+| +++++ ++.|+.|||+++|++++.||+++|+.+. +..+ +||+|||++++|+||+
T Consensus 333 ~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~ 411 (620)
T 4dg8_A 333 IPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGR 411 (620)
T ss_dssp CCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSC
T ss_pred CCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCe
Confidence 7899999999999999 55555 8899999999999999999999999886 3221 7999999999999999
Q ss_pred EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
++|+ ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus 412 l~~~---------GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V 449 (620)
T 4dg8_A 412 LRFI---------GRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL 449 (620)
T ss_dssp EEEE---------ECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred EEEE---------ccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence 9999 9999999999999999999999999999987654
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.7e-36 Score=263.85 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=159.3
Q ss_pred CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeeccc---C
Q psy14311 2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQ---G 72 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~---~ 72 (199)
+.++++|++++.|..... ....+++||.++++|+++++++++++.+.++ +.+++.||+||++..++.... .
T Consensus 358 t~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 437 (663)
T 1ry2_A 358 TQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT 437 (663)
T ss_dssp SEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCC
T ss_pred CEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCc
Confidence 456789999999875532 2345689999999999999999999999887 899999999999876655432 2
Q ss_pred CccCCCCCccccCcEEEEEeCCCCcccCC-CCcceEEEec--CcccccccCCCcCCC--C--CCCCeeecCceEEEcCCC
Q psy14311 73 DYVPEHVGPPICCCSVKLVDVPEMDYFAH-EGKGEVCVRG--NNVFLGYFKDPELNS--I--DELGWHHTGDVGMWLPTL 145 (199)
Q Consensus 73 ~~~~~~~G~p~~~~~~~v~d~~~~~~~~~-g~~Gel~i~~--~~~~~gy~~~~~~~~--~--~~~g~~~TGD~~~~d~~g 145 (199)
...++++|+|+++++++|+|+++|++++. |+.|||++++ |+++.|||++|+.+. + ..+|||+|||++++|+||
T Consensus 438 ~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG 517 (663)
T 1ry2_A 438 PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDG 517 (663)
T ss_dssp CCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTC
T ss_pred ccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCC
Confidence 34678999999999999999548999998 9999999999 589999999998775 2 247899999999999999
Q ss_pred eEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 146 ~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
+++|+ ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus 518 ~l~i~---------GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V 556 (663)
T 1ry2_A 518 YIWIL---------GRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAV 556 (663)
T ss_dssp CEEEC---------SCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEE
T ss_pred CEEEE---------eecCCEEEECCEEcCHHHHHHHHHhCCCcceEEE
Confidence 99999 9999999999999999999999999999987654
No 22
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.4e-36 Score=255.50 Aligned_cols=181 Identities=20% Similarity=0.242 Sum_probs=158.0
Q ss_pred CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-----Cc
Q psy14311 2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-----DY 74 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-----~~ 74 (199)
+.++++|+++..++.... ....++++|.++++|+++++++.+++.+.| ++.+++.||+||++..++..... ..
T Consensus 237 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 316 (512)
T 3fce_A 237 QVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQY 316 (512)
T ss_dssp CEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHC
T ss_pred cEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccccc
Confidence 346789999998875533 334558899999999999999999999998 89999999999999866644322 12
Q ss_pred cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEE
Q psy14311 75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFF 149 (199)
Q Consensus 75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~ 149 (199)
...++|+|.++++++++| +++++++.|+.|||+++||+++.|||++|+.+. + +.++||+|||++++ ++|++++
T Consensus 317 ~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i 394 (512)
T 3fce_A 317 KSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFY 394 (512)
T ss_dssp SSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEE
T ss_pred CCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEE
Confidence 457899999999999999 889999999999999999999999999999887 2 35679999999999 7999999
Q ss_pred EeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
. ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 395 ~---------GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 429 (512)
T 3fce_A 395 N---------GRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI 429 (512)
T ss_dssp E---------EEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEE
T ss_pred e---------cccCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 9999999999999999999999999999987654
No 23
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6.6e-36 Score=252.87 Aligned_cols=181 Identities=19% Similarity=0.177 Sum_probs=156.4
Q ss_pred CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeeccc-----CCc
Q psy14311 2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQ-----GDY 74 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-----~~~ 74 (199)
+.++++|+++..++.... ....++++|.++++|+++++++.+++.+.| ++.+++.||+||++..++.... ...
T Consensus 236 t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 315 (511)
T 3e7w_A 236 NVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRS 315 (511)
T ss_dssp SEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTC
T ss_pred cEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccC
Confidence 356789999999886543 334558899999999999999999999998 8999999999999886654322 122
Q ss_pred cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C-CCCC--eeecCceEEEcCCCeEEE
Q psy14311 75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I-DELG--WHHTGDVGMWLPTLFFFF 149 (199)
Q Consensus 75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~-~~~g--~~~TGD~~~~d~~g~l~~ 149 (199)
...++|+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+. + ..++ ||+|||++++ +||++++
T Consensus 316 ~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~ 393 (511)
T 3e7w_A 316 ESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFC 393 (511)
T ss_dssp SSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEE
T ss_pred CcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEE
Confidence 456799999999999999 779999999999999999999999999999887 2 1233 7999999999 5999999
Q ss_pred EeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
+ ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 394 ~---------GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 428 (511)
T 3e7w_A 394 Q---------GRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVV 428 (511)
T ss_dssp E---------EESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred E---------ccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence 9 9999999999999999999999999999987654
No 24
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=5.1e-36 Score=258.87 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=158.4
Q ss_pred CccccchhHHHHHHHhhhhh---ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-ccCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQE---DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD-YVPE 77 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~---~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~ 77 (199)
+.++++|+++..|+...... ..+++||.+++||+++++++.+++.+.+++++++.||+||++..++...... ....
T Consensus 276 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 355 (617)
T 3rg2_A 276 NVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIH 355 (617)
T ss_dssp CEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHH
T ss_pred cEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccccccc
Confidence 34678999999988654332 2458899999999999999999999999999999999999876444322211 1235
Q ss_pred CCCccc-cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeee
Q psy14311 78 HVGPPI-CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLV 154 (199)
Q Consensus 78 ~~G~p~-~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~ 154 (199)
++|+|+ ++.+++|+| +++++++.|+.|||+++|++++.||+++|+.+. +..++||+|||++++++||+++|+
T Consensus 356 ~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~---- 430 (617)
T 3rg2_A 356 TQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQ---- 430 (617)
T ss_dssp CCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE----
T ss_pred CCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEE----
Confidence 789997 788999999 889999999999999999999999999999987 678999999999999999999999
Q ss_pred eeeEeeecCeEEEecceecccccccccccCCccccccccc
Q psy14311 155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS 194 (199)
Q Consensus 155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~ 194 (199)
||.||+||++|++|+|.|||++|.+||.|.++...
T Consensus 431 -----GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv 465 (617)
T 3rg2_A 431 -----GREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465 (617)
T ss_dssp -----EECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEE
T ss_pred -----eecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 99999999999999999999999999999866543
No 25
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=6.1e-36 Score=255.95 Aligned_cols=174 Identities=20% Similarity=0.252 Sum_probs=149.6
Q ss_pred ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC---ccCCCC
Q psy14311 3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEHV 79 (199)
Q Consensus 3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~---~~~~~~ 79 (199)
.++++|+++..|.. ...+++|.+++||+++++++.+.|.+ .+.+++.||+||++.+++...... ....++
T Consensus 276 ~~~~~P~~~~~l~~-----~~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~v 348 (563)
T 1amu_A 276 VITLPPTYVVHLDP-----ERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPI 348 (563)
T ss_dssp EEEECHHHHTTSCT-----TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCC
T ss_pred EEEeCHHHHHHHHh-----cccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcc
Confidence 45677887766642 23578999999999999999999887 478999999999987665543222 245789
Q ss_pred CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C------CCCCeeecCceEEEcCCCeEEEEe
Q psy14311 80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I------DELGWHHTGDVGMWLPTLFFFFIP 151 (199)
Q Consensus 80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~------~~~g~~~TGD~~~~d~~g~l~~~~ 151 (199)
|+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+. + ..++||+|||+|++|+||+|+|+
T Consensus 349 G~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~- 426 (563)
T 1amu_A 349 GAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL- 426 (563)
T ss_dssp BEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE-
T ss_pred cceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEe-
Confidence 9999999999999 789999999999999999999999999998876 2 13469999999999999999999
Q ss_pred eeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 427 --------GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~V 460 (563)
T 1amu_A 427 --------GRIDNQVKIRGHRVELEEVESILLKHMYISETAV 460 (563)
T ss_dssp --------EEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred --------ccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence 9999999999999999999999999999987654
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.9e-35 Score=252.71 Aligned_cols=180 Identities=17% Similarity=0.225 Sum_probs=154.8
Q ss_pred ccccchhHHHHHHHh----hhhhccCCceeEEEEecCCCCHHHHHHHHHHh------CCcEEeecccccCCCceeecccC
Q psy14311 3 GIYRRNSIWDKLVFK----KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL------GCLVIEGYGQTECVAPITLTIQG 72 (199)
Q Consensus 3 ~~~~~P~~~~~l~~~----~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~------~~~i~~~yG~tE~~~~~~~~~~~ 72 (199)
.++++|+++..+... ......+++||.+++||+++++++.++|.+.+ ++.+++.||+||++.+++.....
T Consensus 273 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~ 352 (576)
T 3gqw_A 273 VSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEA 352 (576)
T ss_dssp EEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTT
T ss_pred EEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeeccccc
Confidence 456788888776532 23344568899999999999999999999988 67899999999999877654321
Q ss_pred Cc----------------------------cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcC
Q psy14311 73 DY----------------------------VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL 124 (199)
Q Consensus 73 ~~----------------------------~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~ 124 (199)
.. ...++|+|+++++++|+| +++++++.|+.|||+++|++++.|||++|+.
T Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~ 431 (576)
T 3gqw_A 353 SGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHICISGPSLMSGYFGDQVS 431 (576)
T ss_dssp CCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEEEEESTTSCCCBTTCHHH
T ss_pred CCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEEEEeCccccccccCCccc
Confidence 10 112799999999999999 8999999999999999999999999999987
Q ss_pred CC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 125 NS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 125 ~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
+. .+.+|||+|||++++ +||+++++ ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus 432 ~~~~~~~g~~~TGDl~~~-~dG~l~~~---------GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~v 491 (576)
T 3gqw_A 432 QDEIAATGWLDTGDLGYL-LDGYLYVT---------GRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDA 491 (576)
T ss_dssp HHHHHHHSCEEEEEEEEE-ETTEEEEE---------EETTTCEEETTEEECHHHHHHHHTTSSSCCTTSE
T ss_pred cccccCCCeeeccceEEE-ECCEEEEE---------ecCcceEEECCEEECHHHHHHHHHhCcccccccE
Confidence 76 567899999999999 69999999 9999999999999999999999999999986544
No 27
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.4e-35 Score=248.33 Aligned_cols=177 Identities=20% Similarity=0.332 Sum_probs=126.3
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHVG 80 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G 80 (199)
+.++++|+++..|+... ....++++|.++.+|++ ++.+.+.+.+ ++.+++.||+||++.+++..... ....++|
T Consensus 250 t~~~~~p~~~~~l~~~~-~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G 324 (509)
T 3ivr_A 250 TVMAEFAPMLGNILDQA-APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAG 324 (509)
T ss_dssp CEEEEETTHHHHHHHHC-CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCC
T ss_pred cEEEecHHHHHHHHhcc-cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCccc
Confidence 34678999999998765 33445789999999987 8888888888 89999999999999876655432 2345699
Q ss_pred ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311 81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY 159 (199)
Q Consensus 81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~ 159 (199)
+|+++++++|+| +++++++.|+.|||+++|++++.|||++|+.+. .+.+|||+|||++++|++|++++.
T Consensus 325 ~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~--------- 394 (509)
T 3ivr_A 325 RPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYA--------- 394 (509)
T ss_dssp EECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEE---------
T ss_pred ccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEe---------
Confidence 999999999999 679999999999999999999999999999887 456899999999999999999999
Q ss_pred eec--CeEEEecceecccccccccccCCcccccccc
Q psy14311 160 TRI--GLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 160 gR~--~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||. +|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 395 GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~v 430 (509)
T 3ivr_A 395 GRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVV 430 (509)
T ss_dssp EEC---------------------------------
T ss_pred CCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEE
Confidence 999 8999999999999999999999999987654
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.4e-34 Score=244.13 Aligned_cols=174 Identities=22% Similarity=0.263 Sum_probs=150.6
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC--CccCCCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG--DYVPEHV 79 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~~ 79 (199)
+.++++|+++..|+....... .+||.+++||+++++++.+.+.+ +++++++.||+||++..+...... ...++++
T Consensus 253 t~~~~~P~~~~~l~~~~~~~~--~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 253 THISLVPQTLNWLMQQGLHEP--YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp CEEEECHHHHHHHHHHTCCSC--TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred cEEEchHHHHHHHHhcCCCCc--CcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 356789999999986543322 38999999999999999999987 599999999999998755544322 2356889
Q ss_pred CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311 80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY 159 (199)
Q Consensus 80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~ 159 (199)
|+|+++++++++|++ +|+.|||+++|++++.||+++|+.+....+|||+|||++++|++|++++.
T Consensus 330 G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~--------- 394 (501)
T 3ipl_A 330 GMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIY--------- 394 (501)
T ss_dssp BEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEE---------
T ss_pred CCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEE---------
Confidence 999999999999954 45689999999999999999999887556899999999999999999999
Q ss_pred eecCeEEEecceecccccccccccCCcccccccc
Q psy14311 160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus 395 GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~v 428 (501)
T 3ipl_A 395 DRRKDLIISGGENIYPYQIETVAKQFPGISDAVC 428 (501)
T ss_dssp EECCCCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred ccccceEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence 9999999999999999999999999999987654
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.9e-35 Score=249.80 Aligned_cols=176 Identities=21% Similarity=0.234 Sum_probs=147.1
Q ss_pred ccccchhHHHHHHHh----hhhhccCCceeEEEEecCCCCHHHHHHHHHHhC------CcEEeecccccCCCceeeccc-
Q psy14311 3 GIYRRNSIWDKLVFK----KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG------CLVIEGYGQTECVAPITLTIQ- 71 (199)
Q Consensus 3 ~~~~~P~~~~~l~~~----~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~------~~i~~~yG~tE~~~~~~~~~~- 71 (199)
.+.++|+++..++.. ......+++||.+++||+++++++.++|.+.++ ..+++.||+||++.+++....
T Consensus 263 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~ 342 (590)
T 3kxw_A 263 ISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPG 342 (590)
T ss_dssp EEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTT
T ss_pred eecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCC
Confidence 345778888887753 223345689999999999999999999999883 369999999999987765321
Q ss_pred --------------------------CCccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCC
Q psy14311 72 --------------------------GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN 125 (199)
Q Consensus 72 --------------------------~~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~ 125 (199)
......++|+|+++ ++|+|++++++++.|+.|||+++||+++.|||++|+.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t 420 (590)
T 3kxw_A 343 SSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEET 420 (590)
T ss_dssp SCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHH
T ss_pred CCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHH
Confidence 11234678999988 88899777999999999999999999999999999987
Q ss_pred C--CCC------CC--eeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccc-cCCccccc
Q psy14311 126 S--IDE------LG--WHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTV-HGETKRSQ 190 (199)
Q Consensus 126 ~--~~~------~g--~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l-~~~~~~~~ 190 (199)
. +.. +| ||+|||+|++| +|+|+|+ ||.||+||.+|++|+|.|||++| ..||.|..
T Consensus 421 ~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~---------GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~ 486 (590)
T 3kxw_A 421 RHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVT---------GRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVL 486 (590)
T ss_dssp HHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEE---------EESSCHHHHHHHTTHHHHHHHHHHHSGGGGGE
T ss_pred HHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEE---------cCccceEEECCEecCHHHHHHHHHhcCccccC
Confidence 6 221 24 99999999999 9999999 99999999999999999999999 88998874
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.7e-34 Score=263.22 Aligned_cols=180 Identities=20% Similarity=0.273 Sum_probs=155.5
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccC----CccC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQG----DYVP 76 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~----~~~~ 76 (199)
+.++++|++++.|..... ...++||.+++||+++++++.+.|.+.++ .+++|.||+||++..++..... ....
T Consensus 699 t~~~~~p~~~~~l~~~~~--~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 776 (1304)
T 2vsq_A 699 NVMFATTALFNLLTDAGE--DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS 776 (1304)
T ss_dssp CEEEEEHHHHHHHHHHCS--HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS
T ss_pred cEEEccHHHHHHHHhhch--hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC
Confidence 346789999998875421 22467999999999999999999988874 7899999999999876654322 2245
Q ss_pred CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C------CCCCeeecCceEEEcCCCeEE
Q psy14311 77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I------DELGWHHTGDVGMWLPTLFFF 148 (199)
Q Consensus 77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~------~~~g~~~TGD~~~~d~~g~l~ 148 (199)
.++|+|+++++++|+| ++++++|.|+.|||+|+|+++++||+|+|+.|. + ..++||+|||+|++++||+++
T Consensus 777 ~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~ 855 (1304)
T 2vsq_A 777 LPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIE 855 (1304)
T ss_dssp CCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEE
T ss_pred CCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEE
Confidence 6899999999999999 789999999999999999999999999999886 2 134599999999999999999
Q ss_pred EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311 149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
|+ ||.||+||++|++|.|.|||.+|.+||.|.++..
T Consensus 856 ~~---------GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V 891 (1304)
T 2vsq_A 856 YA---------GRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV 891 (1304)
T ss_dssp EE---------EEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEE
T ss_pred EE---------cCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEE
Confidence 99 9999999999999999999999999999987654
No 31
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=1.3e-30 Score=216.41 Aligned_cols=168 Identities=15% Similarity=0.087 Sum_probs=139.3
Q ss_pred CccccchhHHHHHHHhhhhhcc---CCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCc-eeecccCCccCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDM---GGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAP-ITLTIQGDYVPE 77 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~---~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~ 77 (199)
+.++++|+++..|+........ +++||.+++||+++++++.+++++.|++++++.||+||+++. +..... ...
T Consensus 180 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~ 256 (436)
T 3qov_A 180 TALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQN 256 (436)
T ss_dssp CEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCS
T ss_pred CEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCC
Confidence 4578999999999866433322 478999999999999999999999999999999999999654 333222 112
Q ss_pred CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCC------e---EE
Q psy14311 78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTL------F---FF 148 (199)
Q Consensus 78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g------~---l~ 148 (199)
.++.|.+++.++++|++++++++.|+.|||++++..- ...+++||+|||++++|++| + ++
T Consensus 257 g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~-----------~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~ 325 (436)
T 3qov_A 257 GMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDR-----------EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDR 325 (436)
T ss_dssp SEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSC-----------CSSCCCSEEEEEEECEECSCCTTCCCSCEECC
T ss_pred eeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCc-----------CCceEEEEEcCCEEEEcCCCCCCCCCccccCc
Confidence 2566777999999999999999999999999997321 02357899999999999998 5 68
Q ss_pred EEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311 149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR 192 (199)
Q Consensus 149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~ 192 (199)
+. ||.+|+||.+|++|+|.|||++|.+||.|.++.
T Consensus 326 i~---------GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~ 360 (436)
T 3qov_A 326 IK---------GRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360 (436)
T ss_dssp CC---------CBSSSCEEETTEEECHHHHHHHHTTCTTEEEEE
T ss_pred cc---------CccCCEEEECCEEECHHHHHHHHHhCcCcCCcE
Confidence 88 999999999999999999999999999998543
No 32
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.96 E-value=1.1e-29 Score=210.82 Aligned_cols=169 Identities=13% Similarity=0.090 Sum_probs=136.5
Q ss_pred CccccchhHHHHHHHhhhhhc---cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCc-eeecccCCccCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQED---MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAP-ITLTIQGDYVPE 77 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~---~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~ 77 (199)
+.++++|+++..|+....... ..+++|.+++||+++++++.+++++.+++++++.||+||+++. +....... ..
T Consensus 184 t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~--~~ 261 (437)
T 2y27_A 184 DIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET--KD 261 (437)
T ss_dssp SEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT--CS
T ss_pred CEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC--CC
Confidence 346789999999986543222 1368999999999999999999999899999999999998543 33332211 11
Q ss_pred CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC-CCeE-----EEEe
Q psy14311 78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP-TLFF-----FFIP 151 (199)
Q Consensus 78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~-~g~l-----~~~~ 151 (199)
.++.|.+++.++++|++++++++.|+.|||++++..- ...+++||+|||++++|+ +|++ ++.
T Consensus 262 g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~-----------~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~- 329 (437)
T 2y27_A 262 GPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTK-----------EALPIIRYRTRDLTRLLPGTARTMRRMEKIT- 329 (437)
T ss_dssp SCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSC-----------SSSCCCSEEEEEEECEECCSSSSSCEECCCC-
T ss_pred ceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCc-----------CCchhheeecCCEEEEeCCCCCCccccCccc-
Confidence 2455668999999998889999999999999987321 022578999999999999 6986 788
Q ss_pred eeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311 152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR 192 (199)
Q Consensus 152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~ 192 (199)
||.+|+|+.+|++|+|.|||++|.+||.|.+.-
T Consensus 330 --------GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~ 362 (437)
T 2y27_A 330 --------GRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHY 362 (437)
T ss_dssp --------EEGGGCEEETTEEECHHHHHHHHTTCTTBCSCC
T ss_pred --------cccCCeEEECCeEECHHHHHHHHHhCcCcCccE
Confidence 999999999999999999999999999997543
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=9.4e-30 Score=211.65 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=136.2
Q ss_pred CccccchhHHHHHHHhhhhhc---cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCc-eeecccCCccCC
Q psy14311 2 KGIYRRNSIWDKLVFKKVQED---MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAP-ITLTIQGDYVPE 77 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~---~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~ 77 (199)
+.++++|+++..|+....... ..+++|.+++||+++++++.+++++.+++++++.||+||+++. +....... ..+
T Consensus 186 t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g 264 (443)
T 2y4o_A 186 KIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG 264 (443)
T ss_dssp SEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS
T ss_pred cEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc
Confidence 346789999999986533222 2378999999999999999999999999999999999998543 33322211 111
Q ss_pred CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCC-CeE-----EEEe
Q psy14311 78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPT-LFF-----FFIP 151 (199)
Q Consensus 78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~-g~l-----~~~~ 151 (199)
.+.|.+++.++++|++++++++.|+.|||++++..- ...+.+||+|||++++|++ |++ ++.
T Consensus 265 -~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~-----------~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~- 331 (443)
T 2y4o_A 265 -PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTK-----------EAMPVIRYRTRDLTALLPPTARAMRRLAKIT- 331 (443)
T ss_dssp -EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSC-----------SSSCCSSEEEEEEECEECCSSSSSCEECCCC-
T ss_pred -eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCc-----------ccChhheeecCCEEEEcCCCCCCccccCccc-
Confidence 444667899999998889999999999999987321 0225789999999999999 986 777
Q ss_pred eeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311 152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR 192 (199)
Q Consensus 152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~ 192 (199)
||.+|+|+.+|++|+|.|||++|.+||.|.+..
T Consensus 332 --------GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~ 364 (443)
T 2y4o_A 332 --------GRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364 (443)
T ss_dssp --------EESSCCEEETTEEECHHHHHHHHHTSTTEEEEE
T ss_pred --------cccCCeEEECCEEECHHHHHHHHHhCcCcCccE
Confidence 999999999999999999999999999996543
No 34
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.96 E-value=3.7e-29 Score=209.54 Aligned_cols=145 Identities=21% Similarity=0.254 Sum_probs=123.0
Q ss_pred cccchhHHHHHHHh-----hhhhccCCceeEEEEecCCCCHHHHHHHHHHhC------CcEEeecccccCCCceeecccC
Q psy14311 4 IYRRNSIWDKLVFK-----KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG------CLVIEGYGQTECVAPITLTIQG 72 (199)
Q Consensus 4 ~~~~P~~~~~l~~~-----~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~------~~i~~~yG~tE~~~~~~~~~~~ 72 (199)
++++|+++..++.. ......+++||.+++||+++++++.++|.+.++ +.+++.||+||++..++.....
T Consensus 285 ~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~ 364 (480)
T 3t5a_A 285 FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPG 364 (480)
T ss_dssp EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTT
T ss_pred EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccC
Confidence 67889999888753 223455689999999999999999999999984 3699999999999877655432
Q ss_pred C-------------------------ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-
Q psy14311 73 D-------------------------YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS- 126 (199)
Q Consensus 73 ~-------------------------~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~- 126 (199)
. ....++|+|++ ++++|+|++++++++.|+.|||+++||+++.|||++|+++.
T Consensus 365 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~ 443 (480)
T 3t5a_A 365 QPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESER 443 (480)
T ss_dssp SSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHH
T ss_pred CCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHH
Confidence 1 23358999999 99999997779999999999999999999999999998876
Q ss_pred -CC-----------CCCeeecCceEEEcCCCeEEEE
Q psy14311 127 -ID-----------ELGWHHTGDVGMWLPTLFFFFI 150 (199)
Q Consensus 127 -~~-----------~~g~~~TGD~~~~d~~g~l~~~ 150 (199)
+. .++||+|||+|++| ||+|+|+
T Consensus 444 ~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~ 478 (480)
T 3t5a_A 444 TFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFII 478 (480)
T ss_dssp HHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEEC
T ss_pred HHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEe
Confidence 32 56799999999997 9999999
No 35
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.95 E-value=5e-29 Score=202.37 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=132.7
Q ss_pred CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP 81 (199)
Q Consensus 2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~ 81 (199)
+.++++|+++..|+........+++||.+++||+++++++.+++++ +++++++.||+||++..++.........+++|.
T Consensus 125 t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~ 203 (358)
T 4gs5_A 125 DFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYV 203 (358)
T ss_dssp SEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEE
T ss_pred eEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeec
Confidence 4567899999999987666667789999999999999999999987 489999999999999977777666666788999
Q ss_pred cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311 82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTR 161 (199)
Q Consensus 82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR 161 (199)
+.|++++.+.+ .||++++++.. .++||+|||++++|++| ++++ ||
T Consensus 204 ~~pgv~~~~~~-----------~Gel~~~g~~~--------------~~g~~~TGDlg~~d~~g-~~~~---------GR 248 (358)
T 4gs5_A 204 FLPGIQYGVDE-----------RGCLHISGAVT--------------NGQTVQTNDLVEIHGNA-FQWI---------GR 248 (358)
T ss_dssp ECTTCEEEECT-----------TSEEEEESGGG--------------TTCCEEEEEEEEECSSE-EEEE---------EE
T ss_pred cCCCeEEEecC-----------cCceEEecccc--------------cCcceecCCccccccCc-eEEc---------cc
Confidence 99999887744 59999987643 47899999999999988 5667 99
Q ss_pred cCeEEEecceeccccccccccc---CCccccccc
Q psy14311 162 IGLRIRSRSRHSLGKRVEGTVH---GETKRSQSR 192 (199)
Q Consensus 162 ~~~~i~~~g~~v~~~eiE~~l~---~~~~~~~~~ 192 (199)
.||+||++|++|+|.|||++|. .||+|.++.
T Consensus 249 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~ 282 (358)
T 4gs5_A 249 ADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAF 282 (358)
T ss_dssp GGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCE
T ss_pred ccCeEEECCEEECHHHHHHHHHHhccCCCccEEE
Confidence 9999999999999999998774 588887653
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.79 E-value=8e-20 Score=148.41 Aligned_cols=152 Identities=15% Similarity=0.087 Sum_probs=105.1
Q ss_pred ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHH-HHh-CCcEEeecccccCCCceeecccCCccCCCC
Q psy14311 3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLR-CAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHV 79 (199)
Q Consensus 3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~-~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~ 79 (199)
.++++|+++..|+..... ...+++||.+++||+++++++.+++. +.| ++.+++.||+||+++++..... .++
T Consensus 208 ~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~ 282 (369)
T 3hgu_A 208 FLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSE 282 (369)
T ss_dssp EEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTT
T ss_pred EEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccC
Confidence 467899999999865322 23447899999999999999999999 898 8999999999999876543221 158
Q ss_pred Ccc------ccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeee
Q psy14311 80 GPP------ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPML 153 (199)
Q Consensus 80 G~p------~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~ 153 (199)
|+| +++++++|+|++++++++.|+.|||++++..-..-+ -.|+|||++...+...-|+.++.
T Consensus 283 G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l------------~ry~tgD~~~~~~~~~g~~~d~~ 350 (369)
T 3hgu_A 283 SQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFY------------PRVAERDTAIRLPGVSGFAGDRL 350 (369)
T ss_dssp CSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEE------------EEEEEEEEEEEECCSTTCSSCEE
T ss_pred CCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCccccc------------ccccCCceEEEecCCCCCcCccc
Confidence 999 999999999976999999999999999863211001 13789999988654222444333
Q ss_pred eeeeEeeecCeEEEecce
Q psy14311 154 VIMLMYTRIGLRIRSRSR 171 (199)
Q Consensus 154 ~~~~~~gR~~~~i~~~g~ 171 (199)
+.-.-++|.++..++.|.
T Consensus 351 ~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 351 ADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEECC-----------
T ss_pred ccceeccccCCCceeeec
Confidence 333344666766666654
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.61 E-value=2.3e-07 Score=79.06 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=87.0
Q ss_pred ccCCc---eeEEEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCcc-cc-CcEEEEEeCC
Q psy14311 22 DMGGN---LRLMLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPP-IC-CCSVKLVDVP 94 (199)
Q Consensus 22 ~~~~s---lr~i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~p-~~-~~~~~v~d~~ 94 (199)
...++ +..++.||. ..-..+++..+ +.++. ..|++||+ .+.. +......+...+.. ++ .+.+..++.+
T Consensus 294 ~lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi-~~~p~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 294 RLWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGI-NLDPLCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp HHSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEE-CSCTTSCGGGCCEEECTTSSEEEEEECS
T ss_pred HhCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeee-ccCCCCCcccCceeecCCcEEEEEEecc
Confidence 34577 455555552 44455666655 57777 99999995 3222 22211111222221 22 2445555422
Q ss_pred CC--------cccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC----CCeEEEEeeeeeeeEeeec
Q psy14311 95 EM--------DYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP----TLFFFFIPMLVIMLMYTRI 162 (199)
Q Consensus 95 ~~--------~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~----~g~l~~~~r~~~~~~~gR~ 162 (199)
+. ..+..|+.+||+++..+ |.|. |++||+.++.. ...+.|+ ||.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R------------Yr~GD~v~v~~f~~~~p~i~f~---------gR~ 424 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR------------MRVGDIVLVTGFYNNAPQFKFV---------RRE 424 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS------------EECCEEEEEEEEETTEEEEEEE---------EET
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---ceee------------EEcCCEEEEcccCCCCcEEEEE---------Eec
Confidence 21 23568999999997542 2222 89999999975 4677888 999
Q ss_pred CeEEEecceecccccccccccCCc
Q psy14311 163 GLRIRSRSRHSLGKRVEGTVHGET 186 (199)
Q Consensus 163 ~~~i~~~g~~v~~~eiE~~l~~~~ 186 (199)
+++|+..|+++++.+||++|.+.-
T Consensus 425 ~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 425 NVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp TEEECSSSCCEEHHHHHHHHHHC-
T ss_pred CCEEEeeeeECCHHHHHHHHHHHH
Confidence 999999999999999999998543
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.59 E-value=1.3e-07 Score=80.79 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=86.1
Q ss_pred ccCCcee---EEEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCc-ccc-CcEEEEEeCC
Q psy14311 22 DMGGNLR---LMLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGP-PIC-CCSVKLVDVP 94 (199)
Q Consensus 22 ~~~~slr---~i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~-p~~-~~~~~v~d~~ 94 (199)
...++++ .++.|| + .....+++..+ +.++. ..|++||+ .+..+. .....++..+. .+| ...+..++.+
T Consensus 299 ~lWPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~-~p~~~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 299 RIWPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNL-NPMSKPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp HHSTTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECS-CTTSCGGGCCEEECTTSCEEEEEEGG
T ss_pred HhCCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeec-CCCCCcccCceeecCCcEEEEEEecc
Confidence 3457755 444444 2 44445666555 57766 99999996 323322 11111122222 122 2444555432
Q ss_pred CC---------------cccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC----CCeEEEEeeeee
Q psy14311 95 EM---------------DYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP----TLFFFFIPMLVI 155 (199)
Q Consensus 95 ~~---------------~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~----~g~l~~~~r~~~ 155 (199)
+. ..|..|+.+||++... .|+|. |++||+.+++. ...+.|+
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R------------Yr~GD~v~v~~f~~~~p~i~~~----- 433 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR------------YRVGDILRVTGFHNSAPQFHFV----- 433 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS------------EEEEEEEEEEEEETTEEEEEEE-----
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh------------eecCCEEEEeecCCCCcEEEEE-----
Confidence 21 3467899999999643 24433 89999999973 4778888
Q ss_pred eeEeeecCeEEEecceecccccccccccC
Q psy14311 156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHG 184 (199)
Q Consensus 156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~ 184 (199)
||.+++|+..|+++++.+||++|..
T Consensus 434 ----gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 434 ----RRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp ----EETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred ----EecCCeEEccccCCCHHHHHHHHHH
Confidence 9999999999999999999999885
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.36 E-value=9.2e-07 Score=75.25 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=85.0
Q ss_pred ccCCceeE--EEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCcc-ccC-cEEEEEeCCC
Q psy14311 22 DMGGNLRL--MLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPP-ICC-CSVKLVDVPE 95 (199)
Q Consensus 22 ~~~~slr~--i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~p-~~~-~~~~v~d~~~ 95 (199)
...++++. ++.+|. + .....+++..+ +.++. ..|++||+ .+.. +......++..+.. +|+ ..+..+..++
T Consensus 299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAA-NVTPRLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEE-CCCTTSCTTTCCEEECTTSCEEEEEEC--
T ss_pred HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeee-ecCCCCCccccceeecCCcEEEEEEeccc
Confidence 44578863 334442 2 34445666655 57766 99999996 2222 22222222222221 222 3334443221
Q ss_pred C----------cccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC----CCeEEEEeeeeeeeEeee
Q psy14311 96 M----------DYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP----TLFFFFIPMLVIMLMYTR 161 (199)
Q Consensus 96 ~----------~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~----~g~l~~~~r~~~~~~~gR 161 (199)
. ..|..|+.+||++...+ |.|. |++||+.++.. ...+.|+ ||
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R------------Yr~GD~v~v~g~~~~~p~~~~~---------gR 430 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR------------YRLGDVVKVIGFYNNTPQLKFI---------CR 430 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCSS------------EEEEEEEEEEEEETTEEEEEEE---------EE
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---ceee------------EEcCCEEEEecccCCCcEEEEE---------ee
Confidence 1 34678999999997542 3322 89999999864 2567777 99
Q ss_pred cCeEEEecceecccccccccccC
Q psy14311 162 IGLRIRSRSRHSLGKRVEGTVHG 184 (199)
Q Consensus 162 ~~~~i~~~g~~v~~~eiE~~l~~ 184 (199)
.++++++.|+++++.+||++|..
T Consensus 431 ~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 431 RNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp TTCCBCSSSCCBCHHHHHHHHHH
T ss_pred cCCeEEeeeeECCHHHHHHHHHH
Confidence 99999999999999999999875
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.13 E-value=3.1e-07 Score=61.33 Aligned_cols=34 Identities=6% Similarity=-0.081 Sum_probs=30.7
Q ss_pred eecCeEEEecceecccccccccccCCcccccccc
Q psy14311 160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK 193 (199)
Q Consensus 160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~ 193 (199)
.|.||+|+++|.|++|.|||++|.+||++..+..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~v 34 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYL 34 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEE
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceE
Confidence 3899999999999999999999999999986543
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.04 E-value=5.9e-07 Score=60.04 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=30.1
Q ss_pred eecCeEEEecceecccccccccccCCcccccc
Q psy14311 160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS 191 (199)
Q Consensus 160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~ 191 (199)
||.+|+|+++|.+++|.|||++|.+||++...
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~ 32 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSD 32 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEE
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCc
Confidence 79999999999999999999999999999744
No 42
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=46.42 E-value=41 Score=20.57 Aligned_cols=14 Identities=36% Similarity=0.209 Sum_probs=9.1
Q ss_pred cEEEEEeCCCCcccC
Q psy14311 86 CSVKLVDVPEMDYFA 100 (199)
Q Consensus 86 ~~~~v~d~~~~~~~~ 100 (199)
++++|+| .+|+|++
T Consensus 3 ~~v~V~d-~~GkPV~ 16 (82)
T 3e8v_A 3 GSVLVTD-AEGQPVA 16 (82)
T ss_dssp EEEEEEC-TTSCBCT
T ss_pred EEEEEEc-CCCCCCC
Confidence 4566677 6677765
Done!