RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14311
(199 letters)
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 223 bits (572), Expect = 6e-71
Identities = 80/146 (54%), Positives = 102/146 (69%), Gaps = 4/146 (2%)
Query: 2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
+G + +WDKLVFKK++ +GG +RLML+G APL+ + FLR ALGC V++GYG TE
Sbjct: 246 RGHGYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTE 305
Query: 62 CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFA--HEGKGEVCVRGNNVFLGYF 119
A TL+ GD HVGPP+ CC +KLVDVPEM YFA +GE+C+RG NVF GY+
Sbjct: 306 TCAGGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYY 365
Query: 120 KDPELNS--IDELGWHHTGDVGMWLP 143
K+PE + DE GW HTGD+G WLP
Sbjct: 366 KNPEKTAEAFDEDGWFHTGDIGEWLP 391
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 173 bits (441), Expect = 5e-51
Identities = 67/139 (48%), Positives = 92/139 (66%), Gaps = 5/139 (3%)
Query: 10 IWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT 69
+WD+LVF K++ +GG +R M +G++PL+ +V+ FLR G V+EGYG TE I+
Sbjct: 361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM 420
Query: 70 IQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEG---KGEVCVRGNNVFLGYFKDPELNS 126
+GD + HVG P C VKLVDVPEM+Y + + +GE+CVRG +F GY+KD
Sbjct: 421 DEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTR 480
Query: 127 --IDELGWHHTGDVGMWLP 143
IDE GW HTGD+G+WLP
Sbjct: 481 EVIDEDGWLHTGDIGLWLP 499
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 131 bits (332), Expect = 7e-36
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 14/141 (9%)
Query: 12 DKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
D+LVF+K+++ +GG +R L+G APL+ +L F R +LG ++EGYG TE A +++
Sbjct: 340 DRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR-SLGIPILEGYGLTETSAVVSVNPP 398
Query: 72 GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDE 129
+V VG P+ VK+ D GE+ VRG NV GY+K+PE + E
Sbjct: 399 DRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTE 447
Query: 130 LGWHHTGDVGMWLPTLFFFFI 150
GW TGD+G +
Sbjct: 448 DGWFRTGDLGELDEDGYLVIT 468
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 128 bits (323), Expect = 5e-35
Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 29/147 (19%)
Query: 10 IWDKL---VFKKVQED------------MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVI 54
+W+K+ + KV GG LR ++G APL VL F R ALG ++
Sbjct: 185 VWEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFR-ALGIPIL 243
Query: 55 EGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV 114
EGYG TE T+ GD VG P+ V++ + GE+ VRG NV
Sbjct: 244 EGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAE-----------DGEILVRGPNV 292
Query: 115 FLGYFKDPELN--SIDELGWHHTGDVG 139
GY+K+PE ++DE GW HTGD+G
Sbjct: 293 MKGYYKNPEATAEALDEDGWLHTGDIG 319
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 122 bits (307), Expect = 2e-32
Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 18/145 (12%)
Query: 10 IWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVA----- 64
+ DKLVF KV++ +GGN+R++L+G+APLA +V +FLR C V++GYG TE A
Sbjct: 371 LCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVS 430
Query: 65 -PITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDY--FAHEGKGEVCVRGNNVFLGYFKD 121
P L + G VGPP+ ++L VPEM+Y A +GE+C+RG +F GY+K
Sbjct: 431 LPDELDMLGT-----VGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKR 485
Query: 122 PELNS---IDELGWHHTGDVGMWLP 143
+L ID GW HTGDVG W P
Sbjct: 486 EDLTKEVLID--GWLHTGDVGEWQP 508
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 121 bits (305), Expect = 5e-32
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 11 WDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE--CVAPITL 68
W++ VF + +GG +R ML+G PL+ F+ G VI+G+G TE C I
Sbjct: 414 WNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGM-VIQGWGLTETVCCGGIQR 472
Query: 69 TIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAH----EGKGEVCVRGNNVFLGYFKDPEL 124
T GD P VG + +KL+D E + H E +GE+ +RG +F GY+K EL
Sbjct: 473 T--GDLEPNAVGQLLKGVEMKLLDTEE---YKHTDTPEPRGEILLRGPFLFKGYYKQEEL 527
Query: 125 NS--IDELGWHHTGDVG 139
+DE GW HTGDVG
Sbjct: 528 TREVLDEDGWFHTGDVG 544
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 117 bits (295), Expect = 1e-30
Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 12 DKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
D+LVF K++E +GG +RL+L+G+APL +V FLR ++ +GYG TE +I
Sbjct: 370 DRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIA 429
Query: 72 GDY-VPEHVGPPICCCSVKLVDVPEMDY--FAHEGKGEVCVRGNNVFLGYFKDPEL-NSI 127
+ + VG P+ +L VPEM Y + +GE+C+RGN +F GY K +L +
Sbjct: 430 NVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEV 489
Query: 128 DELGWHHTGDVGMWLP 143
GW HTGD+G W P
Sbjct: 490 LIDGWFHTGDIGEWQP 505
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 115 bits (290), Expect = 4e-30
Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 12 DKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
D L F+KV+ +GG LRL+++G APL+ + FLR V++GYG TE + P TL
Sbjct: 370 DFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFP 429
Query: 72 GDY-VPEHVGPPICCCSVKLVDVPEMDY--FAHEGKGEVCVRGNNVFLGYFKDPEL-NSI 127
+ + VG P ++L +VPEM Y +GE+CVRG +F GY+K+PEL +
Sbjct: 430 DEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEV 489
Query: 128 DELGWHHTGDVGMWLP 143
+ GW HTGD+G LP
Sbjct: 490 MKDGWFHTGDIGEILP 505
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 113 bits (285), Expect = 2e-29
Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 9/143 (6%)
Query: 10 IWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT 69
+WD LVFKK++ +GG +R ML+G APL+G+ F+ LG + +GYG TE A T +
Sbjct: 405 LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFS 464
Query: 70 IQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEG---KGEVCVRGNNVFLGYFKDP---- 122
D VGPP+ CC VKLV E Y + +GE+ + G +V LGYFK+
Sbjct: 465 EWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTD 524
Query: 123 ELNSIDELG--WHHTGDVGMWLP 143
E+ +DE G W +TGD+G + P
Sbjct: 525 EVYKVDERGMRWFYTGDIGQFHP 547
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 94.1 bits (234), Expect = 1e-22
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 18 KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDYVP 76
K +D+ +LRL+L+G APL +L G ++EGYG TE +T+ D +
Sbjct: 284 KDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA 343
Query: 77 EH--VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGW 132
+ VG P+ V++VD P+ GE+ VRG NV GY+ PE + DE GW
Sbjct: 344 KPGSVGRPLPGVEVRIVD-PDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGW 402
Query: 133 HHTGDVGMWLPTLFFFFI 150
TGD+G + + +
Sbjct: 403 LRTGDLGYVDEDGYLYIV 420
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 91.5 bits (228), Expect = 8e-22
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
+LR++ +G+APL+ + LR + +GYG TE TLT GD P VG +
Sbjct: 264 SLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVP 323
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMWL 142
K+VD +GE+CV+G + GY +PE +IDE GW HTGD+G +
Sbjct: 324 NVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383
Query: 143 PTLFFFFI 150
F+I
Sbjct: 384 ED-GNFYI 390
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 90.5 bits (225), Expect = 1e-21
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLT--IQGDYVPEHVGPP 82
+LRL+L+G PL +L LR G ++ GYG TE T + P +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGW--HHTGDV 138
+ VK++D E + GE+C+RG V GY DPEL E GW + TGD+
Sbjct: 308 LPGVEVKVLD-EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDL 366
Query: 139 GMWLPTLFFFFI 150
G W + +
Sbjct: 367 GRWDEDGYLEIL 378
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 88.8 bits (221), Expect = 9e-21
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 16 FKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV 75
+ + +LRL++AG+ L G ++EGYG TEC I++
Sbjct: 250 ARNAHPEDFSSLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK 309
Query: 76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE---LNSIDELGW 132
P VG P+ V++V + G + VRG NV GY + E + GW
Sbjct: 310 PGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGW 369
Query: 133 HHTGDVGM 140
+ TGD+G
Sbjct: 370 YDTGDIGK 377
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 86.2 bits (214), Expect = 6e-20
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 13 KLVFKKVQEDMG-GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
LV KK+ + +G RL +G+AP+ ++ + R LG + EGYG TE A TL
Sbjct: 262 SLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAYSTLNYP 320
Query: 72 GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL--NSIDE 129
GD VG PI +K+ + GE+ +R + GY+KDPE + E
Sbjct: 321 GDRRIGTVGKPIPGVELKISED-----------GEILIRSPGLMSGYYKDPEKTAEAFTE 369
Query: 130 LGWHHTGDVGMW 141
GW HTGD G
Sbjct: 370 DGWLHTGDKGEI 381
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 83.1 bits (206), Expect = 4e-19
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
LRL+++G PL+ +L G ++EGYG TE + P VG P+
Sbjct: 118 LRLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPG 177
Query: 86 CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLP 143
V++VD E GE+ VRG V GY+ +P + E GW+ TGD+G
Sbjct: 178 VEVRVVD-EEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDE 236
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 83.4 bits (207), Expect = 5e-19
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
NLRL ++GSA L VL G ++E YG TE ++ + G+ P VG P+
Sbjct: 207 NLRLFVSGSAALPVPVLERWEERTGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPG 266
Query: 86 CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMW 141
V++VD + A GE+ VRG NVF Y+ PE + E GW TGDVG+
Sbjct: 267 VEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVV 324
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 80.6 bits (200), Expect = 3e-18
Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIE-GYGQTECVAPITLTIQGDYVPEH---VGPP 82
LR ++G AP+ ++ +R I GYG TE T T D + VG P
Sbjct: 119 LRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRP 178
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
+ VK+VD P+ GE+CVRG +V GY+ DPE +ID GW HTGD+G
Sbjct: 179 LPGVEVKIVD-PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLG 236
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 79.7 bits (197), Expect = 1e-17
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 12 DKLVFKKVQEDMG-GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTI 70
KLVFKKV++ +G + G+AP++ L F +L ++E YG +E P T++
Sbjct: 304 KKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LSLNIPIMELYGMSETSGPHTVSN 362
Query: 71 QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SID 128
+Y G + C K+ + P+ D G GE+C+ G +VF+GY E +ID
Sbjct: 363 PQNYRLLSCGKALPGCETKIHN-PDAD-----GIGEICIWGRHVFMGYLNMEEKTEEAID 416
Query: 129 ELGWHHTGDVG 139
E GW H+GD+G
Sbjct: 417 EDGWLHSGDLG 427
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 78.7 bits (195), Expect = 3e-17
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 26 NLRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTECVAPITL--TIQGDYVPEHVGPP 82
+LRL ++G APL V F G ++EGYG TE +P+T + G+ P +G P
Sbjct: 243 SLRLCISGGAPLPVEVAERFEE-KTGAPLVEGYGLTET-SPVTTVNPLDGERKPGSIGLP 300
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
+ VK+VD + E GE+ VRG V GY+ PE + + GW TGD+G
Sbjct: 301 LPGTEVKIVDDEGNELPPGE-VGELVVRGPQVMKGYWNRPEETAEVLTD-GWLRTGDIG 357
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 76.1 bits (188), Expect = 1e-16
Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV--PEHVGPPI 83
LR + + SAPL VL L G V+E YG TE I V P VG P
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPA 178
Query: 84 CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGM 140
V ++D + +GE+ +RG NV GY +PE N GW TGD+G
Sbjct: 179 -GVEVAILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGY 234
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 76.5 bits (189), Expect = 2e-16
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGD---YVPEHVGPP 82
LRL + G+A + +L LG +V+ GYG +E T D V +G
Sbjct: 283 LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTA 342
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGM 140
I K+V+ + E GE+ VRG NV GY+ DPE + ID GW HTGD+G
Sbjct: 343 IAGVENKIVNELGEEVPVGE-VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGR 401
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 76.0 bits (188), Expect = 2e-16
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCA--LGCLVIEGYGQTECVAPITLTIQGDYVPEH----- 78
+LRL++ G A L +L G +++GYG TE +++ D +P
Sbjct: 282 SLRLVIYGGAALPPALL--REFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339
Query: 79 -VGPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELNSIDEL---GW 132
G P+ ++VD + D +G GE+ VRG + GY+ PE E GW
Sbjct: 340 SAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEAT--AETIDGGW 396
Query: 133 HHTGDVG 139
HTGDVG
Sbjct: 397 LHTGDVG 403
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 75.2 bits (186), Expect = 2e-16
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPI 83
LRL++ G+AP+ + + G + ++GYG TE P T + + VG P+
Sbjct: 117 LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPV 175
Query: 84 CCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTG 136
V++VD +P E GE+ VRG V GY+ PE + + L GW HTG
Sbjct: 176 PGVEVRIVDEDGRELP-----PGE-VGEIVVRGPAVMAGYWNRPEATA-EALRDGWLHTG 228
Query: 137 DVG 139
D+G
Sbjct: 229 DLG 231
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 75.0 bits (185), Expect = 5e-16
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 27 LRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTE--CVAPITLTIQGDYVPEHVGPPI 83
L+ + +G+APL + F G + +GYG TE V + + D P VG +
Sbjct: 277 LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLV 336
Query: 84 CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL--NSIDELGWHHTGDVG 139
K+VD + GE+ VRG V GY +PE +ID+ GW HTGD+G
Sbjct: 337 PNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLG 394
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 67.7 bits (166), Expect = 1e-13
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
L+++ G A L V L+ G L EGYG TE P+ +G P+
Sbjct: 201 LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGT 260
Query: 87 SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-----IDELGWHHTGDVGMW 141
+++D + +GE+ VRG VF GY+ PE + +D + TGD+G
Sbjct: 261 DARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYI 320
Query: 142 LPTLFFFF 149
+FFF
Sbjct: 321 DEEGYFFF 328
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 67.6 bits (166), Expect = 1e-13
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC--VAPITLTIQGDYVPEHVGPP 82
+LR+ L G AP+ + ALG V+ YG TE V T D G P
Sbjct: 208 PSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRP 267
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
+ V++VD + + +GE+ VRG +FLGY DP N + + GW TGD+G
Sbjct: 268 VPGVEVRIVD-DDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNTEAFTDDGWFRTGDLG 324
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 67.3 bits (165), Expect = 2e-13
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
RL+++GSA L V L G +E YG TE + ++ G+ P VG P+
Sbjct: 244 RLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVE 303
Query: 88 VKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
+LVD H+G+ GE+ VRG +F GY P+ + GW TGDV
Sbjct: 304 TRLVDEDGGP-VPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVA 358
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 65.0 bits (159), Expect = 1e-12
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 17 KKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVP 76
+ + + +R+M AG+ P + LG V YG TE PIT+ ++ P
Sbjct: 274 EADKLPLPRPVRVMTAGAPPPP--AVIKKMEELGFEVTHVYGLTETYGPITV---CEWKP 328
Query: 77 EHVGPP---------------ICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYF 119
E P + V +VD M +GK GE+ +RGN V GY+
Sbjct: 329 EWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYY 388
Query: 120 KDPELNSID-ELGWHHTGDVGMWLP 143
K+PE GW H+GD+ + P
Sbjct: 389 KNPEATEEAFAGGWFHSGDLAVVHP 413
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 64.5 bits (158), Expect = 2e-12
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPI-TLTIQGDY-VPEHVGPPI 83
+LR +L G AP L G + YG TE + + TL VG P+
Sbjct: 190 SLRAVLLGGAP-IPPSLLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248
Query: 84 CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMW 141
+++V+ GE+ VRG ++FLGY L +DE GW HTGD+G
Sbjct: 249 PGRELRIVN---------PQDGEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYL 298
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 63.0 bits (154), Expect = 6e-12
Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 26 NLRLMLAGSAPLAGNVLTFL-RCALGCLVIEGYGQTEC-VA----PITLTIQGDYVPEHV 79
+LR L L + L R +I YG TE VA +T P +
Sbjct: 215 SLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI 274
Query: 80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN-----SIDELGWHH 134
G P ++D + +GE+ + G V GY +PE + W+
Sbjct: 275 GYPKPGLRALILD-EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYR 333
Query: 135 TGDVGMWLPTLFFFF 149
TGD+ +
Sbjct: 334 TGDLVYLEDDGLLVY 348
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 63.4 bits (155), Expect = 6e-12
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
+Y RN KK+ M +LRL++AG+ L V G ++EGYG TE
Sbjct: 884 RLYLRN--------KKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATET 935
Query: 63 VAPITLTI----QGDYVPEH------VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
++ + D+ + VG P+ +V++VD + G + + G
Sbjct: 936 SPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGP 995
Query: 113 NVFLGYFKDPELNS-----IDELGWHHTGDVG 139
V GY DPE + ID +GW+ TGD G
Sbjct: 996 QVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKG 1027
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 62.8 bits (153), Expect = 9e-12
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV----GPP 82
LR L AP+ G ++ R ALG ++ +G TE A +TLT D E G P
Sbjct: 314 LRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGA-VTLTKLDD-PDERASTTDGCP 371
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG 139
+ V++VD A + G + VRG + F GY K P+LN D GW TGD+
Sbjct: 372 LPGVEVRVVDADGAPLPAGQ-IGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLA 427
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 62.3 bits (152), Expect = 1e-11
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
LR L G+APL V G V+EGYG TE + G P VG +
Sbjct: 124 LRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPY 183
Query: 86 CSVKLVDV-----PEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDV 138
V++ + D E G + +RG NVF GY + N+ L GW +TGD+
Sbjct: 184 TRVRVAKLDAGGALGRDCAPGE-VGVLAIRGPNVFPGYL-NDAHNAGARLEDGWLNTGDL 241
Query: 139 G 139
G
Sbjct: 242 G 242
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 62.6 bits (153), Expect = 1e-11
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 19/151 (12%)
Query: 9 SIWDKLV--FKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE----- 61
+IW L+ + +D+ R+++ GSA + G VI +G TE
Sbjct: 262 TIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEE--RGVEVIHAWGMTETSPLG 319
Query: 62 CVAPITLTIQGDYVPEHV------GPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNN 113
V+ + + E + G P+ +++VD E + +GK GE+ VRG
Sbjct: 320 TVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVD-DEGNELPWDGKTVGELVVRGPW 378
Query: 114 VFLGYFKDPE-LNSIDELGWHHTGDVGMWLP 143
V Y+KDPE + GW TGDV +
Sbjct: 379 VTGSYYKDPEKTEELTRDGWFRTGDVAVIDE 409
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 61.7 bits (150), Expect = 2e-11
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-CVAPITLTIQGDYVPEHVGPPIC 84
NLR +L G + + ++ + G + YG TE C T T + + VG P+
Sbjct: 220 NLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLA 278
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN-SIDELGWHHTGDVGMW 141
+K+ V EG GE+ V+G N+ GY EL + ++ GW +TGD+G
Sbjct: 279 GREIKI-KVDNK-----EGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGEL 330
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 61.1 bits (148), Expect = 3e-11
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV---GPP 82
+L L AP+ G ++ LG L++ +G TE A +T+T D + + G P
Sbjct: 311 SLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGA-VTVTEPDDALEKASTTDGRP 369
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDV 138
+ VK++D E G + VRG + F GY K P LNS D GW TGD+
Sbjct: 370 LPGVEVKVIDANGAKLSQGE-TGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDL 424
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 60.0 bits (146), Expect = 7e-11
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
+R++L+G+APL + R L V+ +GYG TE + + + P V C
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCG 359
Query: 86 CSV-----KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE--LNSIDELGWHHTGDV 138
V K+VD GE+C+RG + GY DPE N+ID+ GW HTGD+
Sbjct: 360 TVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDI 419
Query: 139 G 139
G
Sbjct: 420 G 420
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 59.6 bits (145), Expect = 9e-11
Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 57 YGQTECVAPITLTIQGDYVPEHV------GPPICCCSVKLVDVPEMDYFAHEGKGEVCVR 110
YGQTE IT + D+ P+ G P V L+D + A GE+CVR
Sbjct: 313 YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVR 371
Query: 111 GNNVFLGYFKDPELNSIDEL---GWHHTGDV 138
G V GY+ PE + E GW HTGDV
Sbjct: 372 GPLVMDGYWNRPEETA--EAFRDGWLHTGDV 400
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 59.6 bits (144), Expect = 9e-11
Identities = 47/125 (37%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 27 LRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTE--CVAPITLTIQGDYVPEH----- 78
L+ ++ +APLA +LT F G V E YG TE C ITLT GD H
Sbjct: 305 LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSC---ITLT-HGDPEKGHGIAKK 360
Query: 79 --VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHH 134
VG + VK +D GE+CVR V GY+ + E IDE GW H
Sbjct: 361 NSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420
Query: 135 TGDVG 139
TGD+G
Sbjct: 421 TGDIG 425
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 59.4 bits (144), Expect = 1e-10
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 56 GYGQTECVAPITLTIQGDYVP---EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
YG TE T D + E VG VK+VD P+ GE+C RG
Sbjct: 349 AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRGEIGELCTRGY 407
Query: 113 NVFLGYFKDPELN--SIDELGWHHTGDVG 139
+V GY+ +PE SIDE GW HTGD+
Sbjct: 408 SVMKGYWNNPEATAESIDEDGWMHTGDLA 436
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 59.2 bits (144), Expect = 2e-10
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 25 GNLRLMLAGSAPLAGNVLTFLRCALG-------CLVIEGYGQTECVAPITLTIQGDYV-P 76
LRL+ A L +V L+ AL + G G TE AP +
Sbjct: 289 KRLRLLFYAGAALPQDVWDRLQ-ALAVRTTGERIPMTSGLGATE-TAPTATFVHWPTDRS 346
Query: 77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHH 134
+G P +KLV GK EV V+G NV GY++DPEL + DE G++
Sbjct: 347 GVIGLPAPGTELKLVPN--------GGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYR 398
Query: 135 TGD 137
GD
Sbjct: 399 IGD 401
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 58.7 bits (143), Expect = 2e-10
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 56 GYGQTECVAPITLTIQGDYV-PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV 114
G G TE AP G ++G P C VKLV V GK EV V+G NV
Sbjct: 371 GLGMTET-APSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNV 421
Query: 115 FLGYFKDPELNS--IDELGWHHTGDVGMW 141
GY++ PEL + DE G++ +GD +
Sbjct: 422 TPGYWRAPELTAEAFDEEGYYRSGDAVRF 450
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 58.0 bits (141), Expect = 4e-10
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV----GPP 82
LR++ G APL+ + + LGC + + +G E + T + D P+ + G P
Sbjct: 257 LRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAEGLVNYT---RLDDPPDVIMRTQGRP 313
Query: 83 ICCC-SVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHH 134
I +++VD VP + GE+ RG GY++ PE N + + G++
Sbjct: 314 ISPADEIRIVDDQGEPVPPGEV------GELLTRGPYTIRGYYRAPEHNARAFTDDGFYR 367
Query: 135 TGDVGMWLPTLFFFF 149
TGD+ ++
Sbjct: 368 TGDLVRIDADGYYRV 382
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 57.4 bits (139), Expect = 6e-10
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 15 VFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY 74
+ K+++ + NL ++L G L+ + L L +GYG TE PI + D
Sbjct: 451 ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDN 510
Query: 75 VPEHVGPPICCCSVKLVDVPEMDYFAHEG--KGEVCVRGNNVFLGYFKDPEL--NSIDEL 130
E +G PI + K Y A + KGE+ ++ +++F GYF + E N+ E
Sbjct: 511 NTESIGGPI-SPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTED 569
Query: 131 GWHHTGDV 138
G+ TGD+
Sbjct: 570 GYFKTGDI 577
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 56.0 bits (136), Expect = 1e-09
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
++RL ++GSAPL + G ++E YG TE + G+ VG P+
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPG 329
Query: 86 CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVGMW 141
S+++ D G + V+G NVF GY++ PE + +E G+ TGD+G
Sbjct: 330 VSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPE-KTAEEFRADGFFITGDLGKI 387
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 55.9 bits (135), Expect = 2e-09
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
L+L L+G L + GC + EGYG TE +++ +G P+
Sbjct: 328 LKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPST 387
Query: 87 SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGM 140
K++D + + GE+CV+G V GY++ PE +D GW TGD+ +
Sbjct: 388 LCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIAL 442
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 55.3 bits (134), Expect = 3e-09
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
LR L G+APL V A G ++EGYG TE ++ G+ VG +
Sbjct: 335 LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPY 394
Query: 86 CSVKLVDVPEMDYFAHE----GKGEVCVRGNNVFLGYFKDPELNS---IDELGWHHTGDV 138
V++V + + + + G +C+ G NVF GY + N +++ GW +TGD+
Sbjct: 395 QRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLED-GWLNTGDL 452
Query: 139 G 139
G
Sbjct: 453 G 453
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 55.4 bits (133), Expect = 3e-09
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT--IQGDYVPEHVGPPI 83
++R ++GSAPL V G ++EGYG TE +P+T + + VP +G P
Sbjct: 324 SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES-SPVTHSNFLWEKRVPGSIGVPW 382
Query: 84 CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP-ELNSIDELGWHHTGDVGMWL 142
++ + + GE+ V+G + GY+ P E ++ + GW HTGDVG
Sbjct: 383 PDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMD 442
Query: 143 PTLFFF 148
FF+
Sbjct: 443 EDGFFY 448
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 55.2 bits (134), Expect = 3e-09
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 56 GYGQTECVAPITLTIQGDYVP---EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
YG TE T T D + VG + VK+VD + +GE+C RG
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGY 406
Query: 113 NVFLGYFKDPE--LNSIDELGWHHTGDVG 139
+V GY+ DPE +ID GW HTGD+
Sbjct: 407 SVMKGYWNDPEKTAEAIDADGWMHTGDLA 435
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 55.1 bits (133), Expect = 4e-09
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLTIQGDYVPEHV---GP 81
LR L G + V R G ++ YG TE P + D + + G
Sbjct: 304 LRFFLCGGTTIPKKVA---RECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGY 359
Query: 82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVG 139
+K+VD +GE RG NVF+GY +PEL + +DE GW+++GD+
Sbjct: 360 AAAGVEIKVVDEARKTLPPGC-EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLC 418
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 54.9 bits (133), Expect = 4e-09
Identities = 39/133 (29%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
L APL + G ++EGYG TE PI + P G P
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPI-IAPGDPAPPGSCGRPRPGVE 255
Query: 88 VKLVD-----VPEMDYFAHEGKGEVCVRGNN---VFLGYFKDPELNSIDEL--GWHHTGD 137
V++VD VP GE+ VR +F GY+ PE + GW HTGD
Sbjct: 256 VRIVDEDGREVPP------GEVGELVVRPRRPWAMFKGYYGMPE-ATAKAWRNGWFHTGD 308
Query: 138 VGMWLPTLFFFFI 150
G F +F+
Sbjct: 309 RGRRDEDGFLYFV 321
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 55.1 bits (133), Expect = 4e-09
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPIC 84
+L+L + G + V G ++EGYG TEC +++ DY +G P+
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVP 385
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVGMW 141
+KLVD + + GE+ V+G V LGY++ PE + DE+ GW TGD+ +
Sbjct: 386 STEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPE--ATDEVIKDGWLATGDIAVM 442
Query: 142 LPTLFFFFI 150
F +
Sbjct: 443 DEEGFLRIV 451
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 53.5 bits (129), Expect = 1e-08
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 50 GCLVIEGYGQTECVAPITL--TIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGK-GE 106
G L++EGYG TE +PI + + D P +VG P V++VD + D +G+ GE
Sbjct: 361 GGLLVEGYGLTET-SPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGE 419
Query: 107 VCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVG 139
+ VRG VF GY+ PE + GW TGDV
Sbjct: 420 LLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVV 453
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 52.6 bits (127), Expect = 2e-08
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 19/139 (13%)
Query: 27 LRLM-LAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC-----VAPITLTIQGDYVPEHVG 80
LRL+ L G A V + G +I YG TE + P +G
Sbjct: 237 LRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIG 296
Query: 81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN----------SIDEL 130
P+ + ++D ++ GE+ + G V GY PEL D
Sbjct: 297 RPLANTRLYVLD-DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGA 355
Query: 131 GWHHTGDVGMWLP--TLFF 147
+ TGD+ +LP L F
Sbjct: 356 RLYRTGDLVRYLPDGNLEF 374
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 50.0 bits (120), Expect = 1e-07
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPI-TLTIQGDYVPEHVGPPICC 85
LR + +G L +L + R LG V E YGQTE + G P +G P+
Sbjct: 209 LRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPG 268
Query: 86 CSVKLVDVPEMDYFAHEGKGEVCVRGNN--VFLGYFKDPELNSIDELG-WHHTGDVG 139
V +VD GE+ V+ + +FLGY+ +PE + G W TGD+G
Sbjct: 269 HEVAVVD-DAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLG 324
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 49.8 bits (119), Expect = 2e-07
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 50 GCLVIEGYGQTECVAPITLTIQGDYVP-EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVC 108
GC ++EGYG TE + G+ VG P+ ++K++D + E +GE+C
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGE-RGELC 416
Query: 109 VRGNNVFLGYFKDPELNS--IDELGWHHTGDV 138
++G V GY++ PE + +D GW TGD+
Sbjct: 417 IKGPQVMKGYWQQPEATAEALDAEGWFKTGDI 448
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 49.6 bits (119), Expect = 2e-07
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 79 VGPPICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE--LNSIDELG 131
VG PI C +++VD +P+ G + ++G+NV GY+ +PE SI G
Sbjct: 316 VGSPIDGCEIRIVDDAGEVLPDRTI------GHIQIKGDNVTSGYYNNPEATKKSITPDG 369
Query: 132 WHHTGDVG 139
W TGD+G
Sbjct: 370 WLKTGDLG 377
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 49.6 bits (119), Expect = 3e-07
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH-----VG- 80
LR + AG+ + G ++EGYG TE AP+ + + P H VG
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTET-APV-IALN---TPMHNKAGTVGR 963
Query: 81 --PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTG 136
P I +L VP +D EG G + VRG NV LGY + ++ GW+ TG
Sbjct: 964 LLPGI---EYRLEPVPGID----EG-GRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTG 1015
Query: 137 DV 138
D+
Sbjct: 1016 DI 1017
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 49.2 bits (118), Expect = 3e-07
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
LR + G A ++ ++L R ALG V EGYG +EC + ++L G P VG P+
Sbjct: 239 LRFVAVGGARVSPSLLQRAR-ALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHV 297
Query: 87 SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGM 140
V A++ GE+ VRG ++ LGY +P D+ W TGD+G
Sbjct: 298 QVS---------IAND--GEILVRG-SLMLGYLGEPPAT--DD--WWATGDLGH 335
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 49.3 bits (118), Expect = 4e-07
Identities = 44/126 (34%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGC-------LVIEGYGQTECVAPITLTIQGDYVPEH 78
NLRLM G A L+ ++ ++ AL GYG TE AP T + E
Sbjct: 347 NLRLMAYGGATLSDDLYERMQ-ALAVRTTGHRIPFYTGYGATE-TAPTTTGTH--WDTER 402
Query: 79 VGP---PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWH 133
VG P+ +KL V + K EV V+G NV GY KDPEL + DE G++
Sbjct: 403 VGLIGLPLPGVELKLAPVGD--------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFY 454
Query: 134 HTGDVG 139
GD
Sbjct: 455 RLGDAA 460
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 49.1 bits (117), Expect = 4e-07
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPITLTIQGDYVPEH-- 78
+L++ L G + +V + G ++E YG TE C+ P+TL E+
Sbjct: 330 SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTL-------KEYNG 382
Query: 79 -VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHT 135
+G PI + D A GE+C++G V GY+K PE + +D GW HT
Sbjct: 383 SIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHT 441
Query: 136 GDVGMWLPTLFFFFI 150
GD+ F + +
Sbjct: 442 GDIARMDEQGFVYIV 456
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 48.9 bits (117), Expect = 5e-07
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
LR +++ PL V+ + R A G + +GYGQTE + + P +G P
Sbjct: 199 LRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGY 258
Query: 87 SVKLVDVPEMDYFAHEGK-------GEVCV----RGNNVFLGYFKDPELNSIDELG-WHH 134
V ++D EG G++ V R +F GY KDPE G W+
Sbjct: 259 RVAIID--------DEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYL 310
Query: 135 TGDVGMWLPTLFFFFI 150
TGD + +F+F+
Sbjct: 311 TGDRAIKDEDGYFWFV 326
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 48.8 bits (117), Expect = 5e-07
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPI-TLTIQGDYVPEH----- 78
+ R ML G P +L +C G V + YG TE + I TL+ PE
Sbjct: 255 SFRCMLLGGGPAPKPLLE--QCKEKGIPVYQSYGMTETASQIVTLS------PEDALTKL 306
Query: 79 --VGPPICCCSVKLV-DVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWH 133
G P+ C +K+ D + F GE+ V+G NV GY + + + GW
Sbjct: 307 GSAGKPLFPCELKIEKDGVVVPPFEE---GEIVVKGPNVTKGYLNREDATRETFQD-GWF 362
Query: 134 HTGDVG 139
TGD+G
Sbjct: 363 KTGDIG 368
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 48.6 bits (117), Expect = 5e-07
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 28/136 (20%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITL------TIQGDYVPEHVGP 81
+++ G A A V + G ++ YG TE +T + G VP +G
Sbjct: 212 LVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVP--IGR 269
Query: 82 PICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL-------NSIDE 129
PI V ++D VP GE+ + G V GY PEL +
Sbjct: 270 PIANTRVYVLDEDLRPVPVG------VPGELYIGGAGVARGYLNRPELTAERFVPDPFGG 323
Query: 130 LG--WHHTGDVGMWLP 143
G + TGD+ WLP
Sbjct: 324 PGERLYRTGDLARWLP 339
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 47.5 bits (113), Expect = 1e-06
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 55 EGYGQTECVAPITLTIQGDYV--PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
+G+G TE + + + D +G P+ C +L+D + GE+ +RG
Sbjct: 293 QGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGELLIRGP 351
Query: 113 NVFLGYFKDPEL--NSIDELGWHHTGDV 138
NV Y+ P+ +I + GW TGD+
Sbjct: 352 NVMKEYWNRPDATEETIQD-GWLCTGDL 378
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 47.1 bits (112), Expect = 2e-06
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 25 GNLRLMLAGSAP-LAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP- 82
+L + G AP A ++L +L G +++G+G +E +++ D + G
Sbjct: 252 RHLTALFTGGAPHAAEDILGWL--DDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAG 309
Query: 83 ICCCSV--KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE--LNSIDELGWHHTGDV 138
I +V ++VD D A GE+ +RG N+ GY++ P+ + GW TGD+
Sbjct: 310 IPTPTVQTRVVDDQGNDCPAGV-PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDI 368
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 47.1 bits (112), Expect = 2e-06
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPP 82
LR++ G+AP + +L + ++ +GQTE ++P+T + G+ VG
Sbjct: 292 LRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTE-MSPVTCMLLGEDAIRKLGSVGKV 350
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDV 138
I + ++VD M+ GE+ R + GY+ +PE + + GW H+GD+
Sbjct: 351 IPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATA-EAFAGGWFHSGDL 406
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 46.9 bits (112), Expect = 2e-06
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 79 VGPPICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELG 131
+G PI ++++VD +PE G + VRG V GY+++PE N + E G
Sbjct: 376 LGRPIPGVAIRIVDEDGALLPE------GEVGRLQVRGPTVTSGYYRNPEANAEAFTEDG 429
Query: 132 WHHTGDVG 139
W TGD+G
Sbjct: 430 WFRTGDLG 437
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 46.2 bits (110), Expect = 3e-06
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 19 VQEDMGG-NLRLMLAGSA--PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV 75
+Q+D+ ++RL A SA PL V+ ++ A G + +GYGQTE A I +
Sbjct: 190 IQQDLAQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVK 249
Query: 76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCV----RGNNVFLGYFKDPELNSIDEL- 130
P +G P+ V L+D + E GE+ + R + LGY DPE +
Sbjct: 250 PGSMGRPLPGYRVVLLDDEGKEIPVTE--GEIALDLGDRPIGLMLGYMGDPE-KTAAAFR 306
Query: 131 -GWHHTGDVGMWLPTLFFFFI 150
G++ TGD + +F+
Sbjct: 307 GGYYRTGDKAYRDEDGYLWFV 327
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 45.8 bits (109), Expect = 5e-06
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 105 GEVCVRGNNVFLGYFKDPELNS---IDELGWHHTGDVG 139
GE+CV G VF GY+ +PE N+ D GW TGD+G
Sbjct: 367 GEICVIGPAVFAGYYNNPEANAKAFRD--GWFRTGDLG 402
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 45.3 bits (107), Expect = 8e-06
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 25 GNLRLMLAG----SAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG 80
LR +L+G L +L AL ++ YG TE +
Sbjct: 485 ERLRQLLSGGEALPLALVQRLLQ--LAALARRLLNLYGPTEAT--LDAPSFPISAELESR 540
Query: 81 PPICCCSVKLVDVPEMDYFAHEGK----GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
PI V + +D GE+ + G + LGY P+L + L +
Sbjct: 541 VPIGRP-VANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYR 599
Query: 135 TGDVGMWLP 143
TGD+ L
Sbjct: 600 TGDLARPLA 608
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 44.9 bits (107), Expect = 9e-06
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 105 GEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVGMWLP 143
GE+ RGN V GY K+P+ + +E GW HTGD+ + P
Sbjct: 389 GEIMFRGNIVMKGYLKNPK--ATEEAFAGGWFHTGDLAVLHP 428
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 44.8 bits (106), Expect = 1e-05
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 29 LMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTI---QGDYVPEHVGPPICC 85
+M AG+AP + F G V YG +E P T+ + D +P +
Sbjct: 315 VMTAGAAPPP--SVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNA 372
Query: 86 CS---------VKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELNSID-ELGWH 133
+ +VD M +GK GE+ +RGN V GY K+P+ N GW
Sbjct: 373 RQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWF 432
Query: 134 HTGDVGMWLP 143
H+GD+G+ P
Sbjct: 433 HSGDLGVKHP 442
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 44.4 bits (105), Expect = 1e-05
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 25 GNLRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH--VGP 81
+L+ + G+APL+G + F++ I+GYG TE A T + + ++ VG
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGL 378
Query: 82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDV 138
K+VD GE+ ++G V GY +P+ +ID+ GW TGD+
Sbjct: 379 LAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDI 437
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 44.5 bits (105), Expect = 1e-05
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 54 IEGYGQTECVAPITLTIQGDYVPE--HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
I+ YG TE + TL G + + G + +++ D + KGE+C+RG
Sbjct: 294 IDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRG 352
Query: 112 NNVFLGYFKDPELNSIDELG-WHHTGDVG 139
V GY+KDPE + G W +GDVG
Sbjct: 353 PKVTKGYWKDPEKTAEAFYGDWFRSGDVG 381
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 44.3 bits (105), Expect = 1e-05
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 46 RCALGCLVIEG-YGQTEC--VAPITLTIQGD-----YVPEHVGPPICCCSVKLVDVPEMD 97
R G ++ E +G TE T Q D P VG P+ K+ D +
Sbjct: 348 RALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGE 407
Query: 98 YFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDVGM 140
+GE+ VR ++ GY+ PE + + L GW HTGD+G
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATA-EALRDGWLHTGDIGK 451
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 44.4 bits (105), Expect = 2e-05
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 14/150 (9%)
Query: 25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP--- 81
LR+ + PL V+ + + LG + + YGQTE P+ G
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVG-NHHALAHEVRAGSMGL 263
Query: 82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNN----VFLGYFKDPELNSIDELG-WHHTG 136
P+ + ++D + A G++ + + F GY+ DPE + G W+ TG
Sbjct: 264 PLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTG 322
Query: 137 DVGMWLPTLFFFFIPM---LVIMLMYTRIG 163
D+ +F+FI ++I Y RIG
Sbjct: 323 DLVERDEDGYFWFIGRADDVIISAGY-RIG 351
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 44.1 bits (104), Expect = 2e-05
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
LR + + SAPL L+ V+ +G TE +T T I+G E+ P +
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTEN--PVVST 354
Query: 86 CSVKLVDVPEMDYFAHEGK-------GEVCVRGNNVFLGYFKDPEL---NSIDELGWHHT 135
V ++ +G GEV +RG V GY DP + N D GW T
Sbjct: 355 GLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTD--GWLRT 412
Query: 136 GDVG 139
GD+G
Sbjct: 413 GDLG 416
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 43.5 bits (102), Expect = 3e-05
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEH--- 78
G + ++ GS P A V R LG V+ YG TE P+ D +PE+
Sbjct: 301 GPVHVLTGGSPPPAALVKKVQR--LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358
Query: 79 ---VGPPICCCSVKLVDVPE---MDYFAHEGK--GEVCVRGNNVFLGYFKDPELNS-IDE 129
+ + VDV + +GK GE+ ++G+++ GY K+P+ S +
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK 418
Query: 130 LGWHHTGDVGMWLP 143
GW +TGDVG+ P
Sbjct: 419 HGWLNTGDVGVIHP 432
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 43.0 bits (102), Expect = 4e-05
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 27 LRLMLAGSA--PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
L + GSA PL + ALG +++ YGQTE G P+
Sbjct: 290 SSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLP 348
Query: 85 CCSVKLVD-----VPEMDYFAHEGKGEVCVRGNN--VFLGYFKDPE--LNSIDELGWHHT 135
+V+ VD VP G GE+ VR + L Y+ DPE + W+ T
Sbjct: 349 GYAVRRVDDEGNPVP-------PGVGELVVRLPWPGMALTYWNDPERYKEAYFG-RWYRT 400
Query: 136 GDVGM 140
GD
Sbjct: 401 GDWAE 405
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 42.8 bits (101), Expect = 5e-05
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 21/116 (18%)
Query: 36 PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPE 95
PL V + G ++EG+GQTE I + P +G P + ++D
Sbjct: 312 PLNPEVFNTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID--- 368
Query: 96 MDYFAHEGK-------GEVCVRGNN-----VFLGYFKDPELN-SIDELGWHHTGDV 138
+GK GE+ +R ++ +F+GY++DPE + G++HTGD
Sbjct: 369 -----PDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDT 419
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 42.4 bits (100), Expect = 8e-05
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
LR++ G+ G++ F R GC+V++G+G TE IT T D P +GP
Sbjct: 269 LRIVY-GNEGAPGDIARFAR-RFGCVVVDGFGSTEGGVAITRT--PDTPPGALGPLP--P 322
Query: 87 SVKLVDV------------PEMDYFAHEGKGE-VCVRGNNVFLGYFKDPELNSIDEL--G 131
V +VD A E GE V G F GY+ DPE ++ + + G
Sbjct: 323 GVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADA-ERMRGG 381
Query: 132 WHHTGDVGMWLPTLFFFF 149
+ +GD+ + +F
Sbjct: 382 VYWSGDLAYRDADGYAYF 399
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 42.2 bits (100), Expect = 8e-05
Identities = 43/148 (29%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 20 QEDMGGNLRLMLAG----SAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPIT-LT 69
+ LR +L G S VL G +I GYG TE IT L
Sbjct: 235 DPEALAGLRQLLVGGDVLSPAHVRRVL---AACPGLRLINGYGPTENTTFSTCHVITRLD 291
Query: 70 IQGDYVPEHVGPPICCCSVKLVD-----VPEMDYFAHEG-KGEVCVRGNNVFLGYFKDPE 123
D +P +G PI +V ++D VP G GE+ V G+ + LGY PE
Sbjct: 292 EAADSIP--IGRPIPNTTVYILDEEGQPVPI-------GVPGELYVGGDGLALGYLNRPE 342
Query: 124 LNS------IDELG--WHHTGDVGMWLP 143
L + G + TGD+ W P
Sbjct: 343 LTAERFVPDPFGPGERLYRTGDLARWRP 370
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 42.1 bits (99), Expect = 9e-05
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 55 EGYGQTECVAPITLTIQGDYVPEH---VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
+GYG TEC +P+ +TI P+H VG PI V +V + G V RG
Sbjct: 330 QGYGTTEC-SPV-ITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRG 387
Query: 112 NNVFLGYFKDPELNSIDELG---WHHTGDVG 139
++F GY + ELG W+ TGD+G
Sbjct: 388 TSLFSGYLGEDFGQGFVELGGETWYVTGDLG 418
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 41.9 bits (99), Expect = 9e-05
Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 27/129 (20%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP---- 82
LR + G A + V L+ G +EGYG TE +A H PP
Sbjct: 307 LRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQT-----------HSNPPDRPK 355
Query: 83 ICCCSVKLVDV------PEM-DYFAHEGKGEVCVRGNNVFLGYFKDPELNS-----IDEL 130
+ C + V PE + GE+ V G VF GY+ PE + ID
Sbjct: 356 LQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGK 415
Query: 131 GWHHTGDVG 139
+ TGD+G
Sbjct: 416 RFFRTGDLG 424
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 41.8 bits (99), Expect = 1e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 56 GYGQTECVAPITLTI-QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV 114
GYG TE T+ + D + VG P+ VKLVD GE+ +RG ++
Sbjct: 270 GYGLTE--MASTVCAKRADGLAG-VGSPLPGREVKLVD------------GEIWLRGASL 314
Query: 115 FLGYFKDPELNSI-DELGWHHTGDVGMW 141
LGY++ +L + ++ GW T D G W
Sbjct: 315 ALGYWRQGQLVPLVNDEGWFATRDRGEW 342
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 40.3 bits (95), Expect = 3e-04
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 105 GEVCVRGNNVFLGYFKDPELN--------SIDELGWHHTGDVG 139
GE+ VRG +V GY+ PE + DE GW TGD+G
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 40.3 bits (95), Expect = 4e-04
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 38/146 (26%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLTIQGDYVPEH----- 78
+LR +++ AP+ V+ R L ++ YG TE + PI+ +I+ E
Sbjct: 289 SLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEAL-PIS-SIESR---EILFATR 343
Query: 79 ----------VGPPICCCSVKLVDVPEMDYFAH--------EGK-GEVCVRGNNVFLGYF 119
VG P+ V+++ + + G+ GE+ V G V Y+
Sbjct: 344 AATDNGAGICVGRPVDGVEVRIIAISD-APIPEWDDALRLATGEIGEIVVAGPMVTRSYY 402
Query: 120 KDPE---LNSI-DELG--WHHTGDVG 139
PE L I D G WH GD+G
Sbjct: 403 NRPEATRLAKIPDGQGDVWHRMGDLG 428
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 40.1 bits (94), Expect = 4e-04
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 105 GEVCVRG---NNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFI 150
GE+C++G +F Y+ DP+ + ++ GW HTGD G FF+F+
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFV 417
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 38.7 bits (91), Expect = 0.001
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 105 GEVCVRGNNVFLGYFKDPELNS----IDELG--WHHTGDVGMWLP 143
GE+ + G V LGY+ DPEL + G + TGD+G + P
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRP 371
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 38.6 bits (90), Expect = 0.001
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 19 VQEDMGG----NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE----CVAPITLTI 70
VQ+D+ +LR + G PL VL + G + EGYGQTE C + I
Sbjct: 281 VQQDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKI 340
Query: 71 QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV-----FLGYFKDPELN 125
+ P +G V+++D + +G++ +R F Y +PE
Sbjct: 341 K----PGSMGKASPPYDVQIIDD-NGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKT 395
Query: 126 SIDELG-WHHTGDVGMWLPTLFFFFI 150
+ G ++ TGD G+ +F+F+
Sbjct: 396 AATIRGDFYITGDRGIMDEDGYFWFV 421
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 38.4 bits (90), Expect = 0.001
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 57 YGQTECVAPITLTIQGDYVPEHV------GPPICCCSVKLVDVPEMDYFAHEGKGEVCVR 110
YGQTE +AP+ + + EH+ G P+ ++VD + + A GE+ R
Sbjct: 319 YGQTE-IAPLATVLGPE---EHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHR 373
Query: 111 GNNVFLGYFKDPELNSIDEL---GWHHTGDVG 139
+ LGY+ DPE + E GW H+GD+G
Sbjct: 374 SPQLMLGYWDDPEKTA--EAFRGGWFHSGDLG 403
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 38.2 bits (89), Expect = 0.002
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
LR ++AG+ L + + G ++EGYG TEC +++ + P VG +
Sbjct: 481 LRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGM 540
Query: 87 SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFK--DP---------ELNSIDELGWHHT 135
+L+ VP + +G G + ++G N+ GY + P E GW+ T
Sbjct: 541 DARLLSVPGI----EQG-GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDT 595
Query: 136 GDV 138
GD+
Sbjct: 596 GDI 598
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 38.0 bits (89), Expect = 0.002
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 19/108 (17%)
Query: 51 CLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPICCCSVKLVDVPEMDYFAHEG-KGE 106
++ YG TE +T T P +G P+ + ++D P+++ G GE
Sbjct: 232 RRLLNTYGPTEAT--VTATA-SRLTPGKPVNIGRPLPNYTCWVLD-PDLEPLVPIGAVGE 287
Query: 107 VCVRGNNVFLGYFKDPELNS----IDELGW-------HHTGDVGMWLP 143
+C+ G V GY PEL + D + TGD+ +L
Sbjct: 288 LCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLE 335
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 38.1 bits (89), Expect = 0.002
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 79 VGPPICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFK-DPELNSIDELGW 132
+GPP+ V++VD +P G G + +RG +V GY D + + D GW
Sbjct: 362 LGPPLPGLEVRVVDEDGQVLPP------RGVGVIELRGESVTPGYLTMDGFIPAQDADGW 415
Query: 133 HHTGDVG 139
TGD+G
Sbjct: 416 LDTGDLG 422
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML 199
TL F +P+LVI++ YT I +R R+R + + S + +ML
Sbjct: 148 TLLGFVLPLLVILVCYTLILRTLRKRARSGASQAR------AKRSSSKERKAAKML 197
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 37.6 bits (88), Expect = 0.002
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 57 YGQTECVA-----PITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
YG TE P L + P+ +G I + +VD + + A GE+ RG
Sbjct: 150 YGLTEAFRSTYLPPEELDRR----PDSIGKAIPNVELWVVD-EDGNRCAPGEVGELVHRG 204
Query: 112 NNVFLGYFKDPE-----LNSIDELG--WHHTGDVG 139
NV GY+ DPE L G +TGD+
Sbjct: 205 ANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLV 239
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 37.6 bits (88), Expect = 0.002
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 57 YGQTE-CVA----PITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
YG TE VA IT + Y +G + ++D E +GE+ + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISG 351
Query: 112 NNVFLGYFKDPEL-----NSIDELGWHHTGDVG 139
+V GY +PE + D +HTGD G
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAG 384
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 37.8 bits (88), Expect = 0.002
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 88 VKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL--NSIDELGWHHTGDVGMWLPTL 145
V+ D + GE+ +R ++ GY +P+ ++ + G+ TGD+G
Sbjct: 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420
Query: 146 FFFFIPMLVIMLMYTRIG--LRIR 167
F + TR+G LR+
Sbjct: 421 QFVYQ---------TRMGDSLRLG 435
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 37.0 bits (86), Expect = 0.004
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 28 RLMLAGSA-PLAGNVLTFLRCALGCLVIEGYGQTECVAPI----TLTIQGDYVP------ 76
R ++ GSA P A ++ G VI +G TE ++P+ L + +P
Sbjct: 297 RTVIGGSACPPA--MIRTFEDEYGVEVIHAWGMTE-MSPLGTLCKLKWKHSQLPLDEQRK 353
Query: 77 --EHVGPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELNSIDELGW 132
E G I +K+V + +GK G++ VRG V YF+ +D GW
Sbjct: 354 LLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLVD--GW 410
Query: 133 HHTGDV 138
TGDV
Sbjct: 411 FPTGDV 416
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 37.3 bits (87), Expect = 0.004
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 100 AHEGKGEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVG 139
G +CVRG ++ GYF+D E S D L GW TGD+G
Sbjct: 407 PERVVGHICVRGPSLMSGYFRDEE--SQDVLAADGWLDTGDLG 447
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 36.8 bits (86), Expect = 0.004
Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 25 GNLRL-MLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPITLTIQGDYVPEH 78
G L L G L ++ L + G + YG TE A + P
Sbjct: 205 GRESLTALCGGEALPRDLAERL-LSTGAELWNMYGPTETTIWSTCARV----TAADGPVT 259
Query: 79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL-------NSIDELG 131
+G PI V ++D ++ GE+ + G+ V GY PEL + D+ G
Sbjct: 260 IGRPIANTQVYVLD-EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPG 318
Query: 132 --WHHTGDVGMWLP 143
+ TGD+ W P
Sbjct: 319 GRLYRTGDLVRWRP 332
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 37.0 bits (86), Expect = 0.005
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 21 EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG 80
D +R+ L P A + R G +++GYG TE I +T P +G
Sbjct: 290 SDRAHRVRVALGPGVPAALHAAFRERF--GVDLLDGYGSTETNFVIAVTHGSQR-PGSMG 346
Query: 81 PPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFL---GYFKDPE--LNSIDELGWHH 134
++VD E D +G+ GE+ +R + F GYF PE + + L W H
Sbjct: 347 RLAPGFEARVVD--EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNL-WFH 403
Query: 135 TGDVGMWLPTLFFFFI 150
TGD + +F F+
Sbjct: 404 TGDRVVRDADGWFRFV 419
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 35.8 bits (83), Expect = 0.011
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 20 QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV 79
+ ++RL ++ L + A G +++G G TE + G P
Sbjct: 203 SAPLFRSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTT 262
Query: 80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTG 136
G P+ +LVD G++ VRG ++ GY+ PE GW TG
Sbjct: 263 GRPVPGYEARLVD-ESGREVPAGTVGDLWVRGPSLAPGYWNLPE--KTQRTLRDGWLRTG 319
Query: 137 DV 138
D
Sbjct: 320 DR 321
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 35.8 bits (83), Expect = 0.012
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 50 GCLVIEGYG--QTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGK--- 104
GC + EGYG +T VA ++ +G P+ V + D +G
Sbjct: 352 GCPITEGYGLSETSPVATCNPVDATEFSGT-IGLPLPSTEVSIRD--------DDGNDLP 402
Query: 105 ----GEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVG 139
GE+C+RG V GY+ P+ + + G+ TGDVG
Sbjct: 403 LGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVG 443
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 35.5 bits (82), Expect = 0.014
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 53 VIEGYGQTEC-VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFA--HEG------ 103
+ YG TE VA ++ I + + ++ PI P+M+ F EG
Sbjct: 287 IYNTYGPTEATVAVTSVKITQEILDQYPRLPIG------FAKPDMNLFIMDEEGEPLPEG 340
Query: 104 -KGEVCVRGNNVFLGYFKDPEL-----NSIDELGWHHTGDVG 139
KGE+ + G +V GY +PE S + + TGD G
Sbjct: 341 EKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAG 382
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 35.5 bits (82), Expect = 0.014
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV----GPP 82
LRL+ G A L+ + + LGC + + +G E + T + D PE + G P
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYT---RLDDPPEIIIHTQGRP 363
Query: 83 ICCC-SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDV 138
+ V++VD E GE+ RG GY++ PE N + D G++ +GD+
Sbjct: 364 LSPDDEVRVVDADGNPVAPGE-VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDL 421
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 35.0 bits (81), Expect = 0.020
Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 29/141 (20%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTEC--VAPITL----------TIQ 71
+LR +L+ AP+ ++L L + YG TE VA I
Sbjct: 200 SLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEA 259
Query: 72 GDYVPEHVGPPICCCSVKLV---DVP-EMDYFAHEGK----GEVCVRGNNVFLGYFKDPE 123
G V VG P+ V+++ D P E GE+ V G +V Y+ PE
Sbjct: 260 GAGV--CVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPE 317
Query: 124 LNSI-----DELGWHHTGDVG 139
+ WH GD+G
Sbjct: 318 ATKLAKISDGNRIWHRMGDLG 338
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 33.9 bits (77), Expect = 0.042
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 91 VDV--PEMDYFAHEGKG--EVCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDVGMWLPT 144
+ V E +GK EV ++G + GY+ + E G+ TGD+ +W
Sbjct: 343 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 402
Query: 145 LFFFF 149
+
Sbjct: 403 GYVEI 407
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 34.0 bits (78), Expect = 0.042
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPIT-LTIQGDYVPEHVGPPICC 85
L+L+ G A + + GC + + +G E + T L + + G P+
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSP 359
Query: 86 C-SVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDV 138
V++VD + G+ G + RG F GY+K PE N + D G+++TGD+
Sbjct: 360 DDEVRVVD--DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDL 414
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 33.8 bits (77), Expect = 0.048
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 32 AGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPIT-LTIQGDYVPEHVGPPICCCSVKL 90
+G APL V F G + G+G TE +P T +G P +G + + +
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDV 378
Query: 91 VDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSIDELGWHH-TGDVGMWLPTLFFF 148
V + + G+ GE+ +RG NV GY+ PE ++ +G TGD+G +FF
Sbjct: 379 VSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFF 438
Query: 149 FI 150
+
Sbjct: 439 LV 440
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 33.0 bits (76), Expect = 0.088
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 23/125 (18%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV----GPP 82
L+L+ G A L+ + + LGC + + +G E + T + D E + G P
Sbjct: 302 LKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYT---RLDDSDERIFTTQGRP 358
Query: 83 ICCC-SVKLVD-----VPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWH 133
+ V + D +P+ G+ G + RG F GY+K P+ N+ D G++
Sbjct: 359 MSPDDEVWVADADGNPLPQ-------GEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411
Query: 134 HTGDV 138
+GD+
Sbjct: 412 CSGDL 416
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 33.1 bits (76), Expect = 0.093
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 25/108 (23%)
Query: 50 GCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVD--------VPEMDYFAH 101
GC V +GYG +E + + P +G V + + V D AH
Sbjct: 288 GCQVEDGYGSSEGAVIVVR--EPGTPPGSIGRGAP--GVAIYNPETLTECAVARFD--AH 341
Query: 102 -------EGKGE-VCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDVG 139
E GE V G F GY+ +PE + + + G + +GD+
Sbjct: 342 GALLNADEAIGELVNTAGAGFFEGYYNNPEATA-ERMRHGMYWSGDLA 388
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 31.5 bits (71), Expect = 0.31
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 56 GYGQTECVAPITLTIQGDYVPE-----HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVR 110
GYG TE + L D +G P+ S ++D +++ GE+ +
Sbjct: 4841 GYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDG-QLNPLPVGVAGELYLG 4899
Query: 111 GNNVFLGYFKDPEL 124
G V GY + P L
Sbjct: 4900 GEGVARGYLERPAL 4913
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 30.9 bits (70), Expect = 0.45
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 80 GPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELNSIDELGWHHTGD 137
G P +K+ D +GK G + VRG V Y++ + +D+ G+ TGD
Sbjct: 359 GYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRV-DGEILDDDGFFDTGD 416
Query: 138 VG 139
V
Sbjct: 417 VA 418
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 30.7 bits (70), Expect = 0.50
Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 29/121 (23%)
Query: 53 VIEGYGQTECVAPITLTIQGDYVPEHVGPP------ICCCSVKLVDVPEMDYFAHEGK-- 104
++E YG TE P VG + V+ E A+
Sbjct: 223 IVEFYGSTEGNVGFINL---FNKPGAVGRLPPAAIAVVKYD---VETEEPIRDANGFCIK 276
Query: 105 ------GEVCVRGN--NVFLGYFKDPELNS---IDEL----GWHHTGDVGMWLPTLFFFF 149
G + N F GY D D + +TGD+ +F+F
Sbjct: 277 VPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYF 336
Query: 150 I 150
+
Sbjct: 337 V 337
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 30.5 bits (69), Expect = 0.63
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 80 GPPICCC-------SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-----I 127
G + C +V +VD ++ GE+ G ++ GY+++PE ++
Sbjct: 366 GSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEH 425
Query: 128 DELGWHHTGDVG 139
D W TGD+G
Sbjct: 426 DGRTWLRTGDLG 437
Score = 27.1 bits (60), Expect = 7.8
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 53 VIEGYGQTEC---VA--PITL-TIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGE 106
++ YG EC VA + L + +G Y+P +G P + L+D ++ GE
Sbjct: 4012 LVNAYGPAECSDDVAFFRVDLASTRGSYLP--IGSPTDNNRLYLLD-EALELVPLGAVGE 4068
Query: 107 VCVRGNNVFLGYFKDPE 123
+CV G V GY DP
Sbjct: 4069 LCVAGTGVGRGYVGDPL 4085
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 29.4 bits (66), Expect = 1.2
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 18/53 (33%)
Query: 105 GEVCVRGNNVFLGYFKDP------------------ELNSIDELGWHHTGDVG 139
GE+ VRGN V Y+ P + GW TGDVG
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVG 438
>gnl|CDD|224005 COG1079, COG1079, Uncharacterized ABC-type transport system,
permease component [General function prediction only].
Length = 304
Score = 29.1 bits (66), Expect = 1.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 145 LFFFFIPMLVIMLMYTRIGLRIRS 168
L + ++ +L TR GLR+R+
Sbjct: 148 LAILLVALVWYVLYRTRFGLRLRA 171
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 28.9 bits (65), Expect = 2.0
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 50 GCLVIEGYGQTECVAPITLTIQGDYV--PEHVGPPICCCSVKLVD-----VPEMDYFAHE 102
G ++ E YG TE A +T D + P VG ++ VD +P+ +
Sbjct: 296 GPVIYEYYGSTESGA-VTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGE----- 349
Query: 103 GKGEVCVR--GNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFI 150
GE+ R GN F + K + ID G+ +GDVG +L + F+
Sbjct: 350 -IGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVG-YLDADGYLFL 397
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 29.0 bits (65), Expect = 2.1
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 14 LVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG--CLVIEGYGQTEC-VAPITLTI 70
+ +L + + G + ++ L L GYG TE V
Sbjct: 3342 AEDAGGAD--CASLDIYVFGGEAVPPAAFEQVKRKLKPRGL-TNGYGPTEAVVTVTLWKC 3398
Query: 71 QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGK---------GEVCVRGNNVFLGYFKD 121
GD V E PI V + +G+ GE+ + G + GY +
Sbjct: 3399 GGDAVCEAPYAPIG------RPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQR 3452
Query: 122 PEL 124
P L
Sbjct: 3453 PSL 3455
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 28.6 bits (64), Expect = 2.2
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 102 EGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG 139
GE+ +RG ++ GY ID W TGD+G
Sbjct: 370 REIGEIEIRGASMMSGYLGQA---PIDPDDWFPTGDLG 404
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 28.3 bits (63), Expect = 3.0
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 20 QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH 78
+ D+ L LAG PL ++ LG VI+ Y QTE P+ + G D P
Sbjct: 350 KHDLSSLHWLFLAGE-PLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVK 408
Query: 79 VGPP 82
+G P
Sbjct: 409 LGSP 412
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 28.2 bits (63), Expect = 3.1
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 20/58 (34%)
Query: 105 GEVCVRGNNVFLGYFKDPE--------------------LNSIDELGWHHTGDVGMWL 142
GE+ + G+N+ GY+ PE + D+ W TGD+G++L
Sbjct: 430 GEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL 487
>gnl|CDD|237612 PRK14108, PRK14108, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 986
Score = 28.0 bits (63), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 100 AHEGKGEVCVRGNNVFLG 117
AH+G GE+ V G+NV LG
Sbjct: 334 AHKGHGEIAVEGHNVKLG 351
>gnl|CDD|179518 PRK02975, PRK02975, putative common antigen polymerase;
Provisional.
Length = 450
Score = 27.7 bits (62), Expect = 4.2
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 139 GMWLPTLFFFFIP-MLVIMLMY 159
G+ L F+FFIP MLV+ +
Sbjct: 155 GVALKRFFYFFIPAMLVVYFLR 176
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 1046
Score = 28.0 bits (62), Expect = 4.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 104 KGEVCVRGNNVFLGY--FKDPELNSIDELGWHHTGDVGMWLPTLFF 147
KG VCV L Y F + N+ DE H + W+P LFF
Sbjct: 531 KGAVCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFF 576
>gnl|CDD|162096 TIGR00897, 2A0118, polyol permease family. This family of proteins
includes the ribitol and D-arabinitol transporters from
Klebsiella pneumoniae and the alpha-ketoglutarate
permease from Bacillus subtilis [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 402
Score = 27.5 bits (61), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 128 DELGWHHT----GDVGMWLPTLFFFFIPMLV 154
D+LGW +T G VG + TL ++IP
Sbjct: 282 DKLGWMNTVRWFGGVGCGIFTLALYYIPQHF 312
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 27.2 bits (61), Expect = 6.3
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 126 SIDELGWHHTGDVGMWLPTLFFFFIPML-VIMLMYTRIGLRIRSRSRHSLGK 176
S+ L + FF ML +L+ + + + R+ +L K
Sbjct: 35 SLVALLANQVLT--GLHVHTFFDASAMLITFILLGRWLEMLAKGRASDALSK 84
>gnl|CDD|225993 COG3462, COG3462, Predicted membrane protein [Function unknown].
Length = 117
Score = 25.9 bits (57), Expect = 8.0
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 136 GDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRV 178
G GMWL F+ + ++ +++ I +R S +R
Sbjct: 45 GLYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGSDDDDAERG 87
>gnl|CDD|177215 MTH00158, ATP8, ATP synthase F0 subunit 8; Provisional.
Length = 32
Score = 24.0 bits (53), Expect = 8.5
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 140 MWLPTLFFFFIPMLVIMLM 158
WL LF F+ ++ +
Sbjct: 8 NWL-ILFILFLITFILFNI 25
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 26.7 bits (59), Expect = 9.4
Identities = 32/137 (23%), Positives = 43/137 (31%), Gaps = 32/137 (23%)
Query: 24 GGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPIT---------------L 68
GG+L L L F L YG TE + +T L
Sbjct: 297 GGSLSSRL-----LPDAKKLFPNAKL----FSAYGMTEACSSLTFMTLHDPTLESPKQTL 347
Query: 69 TIQGDYVPEHVGPPICCCSVKLVDVPE----MDYFAHEGKGEVCVRGNNVFLGYFKDPEL 124
V P C K E +D + G+ + RG +V LGY+
Sbjct: 348 QTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGR--ILTRGPHVMLGYWGQNSE 405
Query: 125 NSIDEL--GWHHTGDVG 139
+ GW TGD+G
Sbjct: 406 TASVLSNDGWLDTGDIG 422
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 26.9 bits (59), Expect = 9.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 48 ALGCLVIEGYGQTECVAPITLTIQGDY--VPEHVGPPICCCSVKLVD 92
G ++ GYG TE V L D PE VG P+ C V+++D
Sbjct: 315 TYGDILYNGYGSTE-VGIGALATPADLRDAPETVGKPVAGCPVRILD 360
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.144 0.458
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,231,517
Number of extensions: 954788
Number of successful extensions: 1552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 151
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.5 bits)