RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14311
(199 letters)
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 105 bits (263), Expect = 1e-26
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
RL+++GSA L + + A G VIE YG TE + ++ G+ VG P+
Sbjct: 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPG 332
Query: 86 CSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDV 138
++LV+ + +D E GE+ VRG N+F Y P+ + E G+ TGD+
Sbjct: 333 VELRLVEEDGTPIAALD---GESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDM 389
Query: 139 G 139
Sbjct: 390 A 390
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 99.2 bits (248), Expect = 1e-24
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
++RL ++GSAPL + G V+E YG TE + GD VP VGP +
Sbjct: 269 HMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPG 328
Query: 86 CSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
S ++ D PE G G + V+G NVF GY++ PE + G+ TGD+G
Sbjct: 329 VSARVTD-PETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLG 384
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 98.0 bits (245), Expect = 3e-24
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPP 82
NL+ +L G A L+ ++ + +G TE LT + + VG P
Sbjct: 275 NLQKILLGGAKLSATMIETAL-QYNLPIYNSFGMTET-CSQFLTATPEMLHARPDTVGMP 332
Query: 83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG 139
VK+ + + EG GE+ ++G NV GY +L E G+ +TGD+
Sbjct: 333 SANVDVKIKNPNK------EGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIA 383
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 97.2 bits (243), Expect = 5e-24
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPI 83
R + G AP+ ++ A V++GY TE + + G
Sbjct: 286 FRYFITGGAPMPEALIKIYA-AKNIEVVQGYALTES-CGGGTLLLSEDALRKAGSAGRAT 343
Query: 84 CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMW 141
V + + H G+GEV ++ + + Y+ PE + D GW TGD+G
Sbjct: 344 MFTDVAVRG-DDGVIREH-GEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEI 400
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 93.4 bits (233), Expect = 1e-22
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
LR + P + F +GQ+E + ++ P+ G P+
Sbjct: 274 LRAVTGLDTPET--IERFEATCPNATFWATFGQSET-SGLSTFAPYRDRPKSAGRPLFWR 330
Query: 87 SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMW 141
+V +VD E GE+ +RG VF GY+ + + GWHHTGD+G +
Sbjct: 331 TVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRF 385
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 91.2 bits (227), Expect = 8e-22
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEHVGPPI 83
L+L+ G A L+ + + +GC + + +G E + + T D + G P+
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGL--VNYTRLDDSAEKIIHTQGYPM 361
Query: 84 C-CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
C V + D E + G + RG F GY+K P+ N + D G++ +GD+
Sbjct: 362 CPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLI 419
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 90.7 bits (226), Expect = 1e-21
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
L + +G APL+ V + V +GYG TE + I +T +GD P G +
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPL 370
Query: 86 CSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVG 139
K++D + + GEVCV+G + GY +PE IDE GW HTGD+G
Sbjct: 371 FKAKVID-LDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIG 426
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 90.0 bits (224), Expect = 2e-21
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
L + +G APL+ V + I +GYG TE + I +T +GD P VG +
Sbjct: 309 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPF 368
Query: 86 CSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
K+VD + + GE+CVRG + GY +PE ID+ GW H+GD+
Sbjct: 369 FEAKVVD-LDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 89.2 bits (222), Expect = 4e-21
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTE-----CVAPITLTIQGDYVPEHVG 80
LR++ +G APL + +R + +GYG TE + D P G
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACG 358
Query: 81 PPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGD 137
+ +K+VD PE + GE+C+RG+ + GY DPE S ID+ GW HTGD
Sbjct: 359 TVVRNAEMKIVD-PETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417
Query: 138 VG 139
+G
Sbjct: 418 IG 419
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 87.6 bits (218), Expect = 1e-20
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEHVGPPI 83
L+++ G A + ++ GC + + +G E + + T D + G P+
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL--VNYTRLDDPEEIIVNTQGKPM 357
Query: 84 C-CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
++ D G + RG GY+K E N S E G++ TGD+
Sbjct: 358 SPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 87.6 bits (218), Expect = 1e-20
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY---VPEHVGPPI 83
L+L+ G A ++ + L C + + +G E + + T D + G PI
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL--VNYTRLDDSDEQIFTTQGRPI 366
Query: 84 CC-CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
+K+VD + G + RG F GY++ PE N DE ++++GD+
Sbjct: 367 SSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLV 424
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 86.1 bits (214), Expect = 5e-20
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
LR + A + VL + L + YG TE Q P
Sbjct: 274 LRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA-MNSLYMRQPK--TGTEMAPGFFS 330
Query: 87 SVKLVDV--PEMDYFAHEGKGEVCVRG-NNVFLGYFKDPELN--SIDELGWHHTGDVG 139
V++V + + A+ +GE+ V ++ F+GY P+ + + GW+ T DV
Sbjct: 331 EVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVA 387
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 86.2 bits (214), Expect = 6e-20
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTE--CVAPITLTIQGDYVPEH---VG 80
+R++ +G+APL + + + +GYG TE V ++L + P G
Sbjct: 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACG 405
Query: 81 PPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGD 137
+ +K+VD P+ + GE+C+RG+ + GY +P + ID+ GW HTGD
Sbjct: 406 TVVRNAEMKIVD-PDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGD 464
Query: 138 VG 139
+G
Sbjct: 465 IG 466
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 81.5 bits (202), Expect = 2e-18
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALG-------CLVIEGYGQTECVAPITLT--IQGDYVPE 77
L++ G+ P+A ++ L + +G TE P+ T
Sbjct: 298 LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA-CPMVTTNPPLRLDKST 356
Query: 78 HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPE------LNSIDEL 130
G P+ +K++ E G+ GE+ +RG N+F GY+K +
Sbjct: 357 TQGVPMSDIELKVIS-LEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGR 415
Query: 131 GWHHTGDVG 139
+ TGDVG
Sbjct: 416 KFFRTGDVG 424
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 75.3 bits (186), Expect = 3e-16
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 27 LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
+R+ + L + GC +++G G TE + G G P+
Sbjct: 302 IRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGY 361
Query: 87 SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
++L D G++ ++G + + Y+ + E + + W +GD
Sbjct: 362 EIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLG-EWIRSGDKY 414
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 71.8 bits (177), Expect = 4e-15
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Query: 10 IWDKLV--FKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPIT 67
+W L + + RL++ GSA + F R +G V +GYG TE +
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVV 334
Query: 68 LTIQGDYVPEHV--------------GPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRG 111
G PI +++ D E +GK GEV ++G
Sbjct: 335 Q---NFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKG 390
Query: 112 NNVFLGYFKDPELN--SIDELGWHHTGDVGMWLP 143
+ GY+ + E ++ G+ TGD+ +W
Sbjct: 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 57.6 bits (140), Expect = 3e-10
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 28 RLMLAGSA--PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
L + L L R G + E YGQTE ++ P ++G C
Sbjct: 323 HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASC 382
Query: 86 CSVKLVDVPEMDYFAHEGKGEVCVRGN-----NVFLGYFKDPELNSIDELG-WHHTGDVG 139
V+++D + + +G++ +R +F GY +P+ + + G + GD G
Sbjct: 383 YDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441
Query: 140 MW 141
+
Sbjct: 442 IK 443
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 50.4 bits (121), Expect = 9e-08
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 14/68 (20%)
Query: 79 VGPPICCCSVKLVD-----VPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN-SIDELG 131
G + +++ + V E G +C+ G ++ GYF D I G
Sbjct: 387 CGKALPEHGIEIRNEAGMPVAE-------RVVGHICISGPSLMSGYFGDQVSQDEIAATG 439
Query: 132 WHHTGDVG 139
W TGD+G
Sbjct: 440 WLDTGDLG 447
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 49.1 bits (118), Expect = 2e-07
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 19 VQEDMG----GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY 74
++ED+ L+ + PL V G ++EG+GQTE V I +
Sbjct: 331 IKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEP 390
Query: 75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGK-------GEVCVRGNN-----VFLGYFKDP 122
P +G P ++L+D +G+ GE+ + +F+ Y KDP
Sbjct: 391 KPGSIGKPTPGYKIELMD--------RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDP 442
Query: 123 ELNS---IDELGWHHTGDVGM 140
E D G++HTGD+
Sbjct: 443 ERTEETWHD--GYYHTGDMAW 461
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 48.1 bits (115), Expect = 5e-07
Identities = 9/55 (16%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 145 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML 199
+ +F+P+LVI YT +G+ + + + ++ +++ +++M+
Sbjct: 202 VLIYFLPLLVIGYAYTVVGITLWASEIPG------DSSDRYHEQVSAKRKVVKMM 250
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 46.1 bits (110), Expect = 3e-06
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 79 VGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN----------SI 127
G PI VK++D P+ + GE+ V+ N+V GY+ PE
Sbjct: 376 SGNPIQ--EVKIID-PDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDE 432
Query: 128 DELGWHHTGDVG 139
+ TGD+G
Sbjct: 433 RSAIYLRTGDLG 444
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 44.3 bits (105), Expect = 1e-05
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 79 VGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN------------ 125
P V++VD + +G GE+ V G+NV GY++ P+ +
Sbjct: 396 YMLPRSP-IVRIVD-SDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPS 453
Query: 126 -SIDELGWHHTGDVG 139
E W TGD G
Sbjct: 454 PGTPEGPWLRTGDSG 468
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 40.5 bits (94), Expect = 2e-04
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 130 LGWHHTGDVG---------MWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEG 180
G++ TGD + ++ F++P V +L+Y RI + ++ R R ++ + +
Sbjct: 179 FGFNTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRI 238
Query: 181 TVHGETKRSQSRKSIIRM 198
K + + +
Sbjct: 239 DEGLRLKIYKDTEGYYTI 256
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 2e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 11/35 (31%)
Query: 7 RNSIWDKLVFKKVQEDMGGNLRLMLAGSAP-LAGN 40
+ ++ KK+Q +L+L SAP LA
Sbjct: 19 KQAL------KKLQ----ASLKLYADDSAPALAIK 43
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 39.3 bits (91), Expect = 4e-04
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 17/86 (19%)
Query: 130 LGWHHTGDVGMWLP-----------------TLFFFFIPMLVIMLMYTRIGLRIRSRSRH 172
L W V + F++P++++ ++Y I +SR
Sbjct: 160 LFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINI 219
Query: 173 SLGKRVEGTVHGETKRSQSRKSIIRM 198
R++ + + + I +
Sbjct: 220 FEMLRIDEGLRLKIYKDTEGYYTIGI 245
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 38.6 bits (89), Expect = 7e-04
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRH-SLGKRVEGTVHGETKRSQSRKSI 195
+P+L+++ +Y RI L R + + + EG K ++ +I
Sbjct: 197 FFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTI 249
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 38.1 bits (88), Expect = 0.001
Identities = 8/55 (14%), Positives = 22/55 (40%)
Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRM 198
+ F++P L+++ Y +I +R R++ + + + I +
Sbjct: 176 AIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGI 230
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 37.9 bits (88), Expect = 0.001
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 145 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML 199
LF F +P+LVI + Y+ + R+R S G ++ ++ + I R++
Sbjct: 295 LFSFIVPVLVISVCYSLMIRRLRGVRLLS----------GSREKDRNLRRITRLV 339
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 37.0 bits (85), Expect = 0.002
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS 194
+P+L+++ +Y RI L R + + + +
Sbjct: 207 FFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAA 257
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 36.6 bits (85), Expect = 0.003
Identities = 8/56 (14%), Positives = 22/56 (39%)
Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML 199
++ F+IP+L+++ + R+ + + R T R + ++
Sbjct: 182 SIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGII 237
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 36.6 bits (84), Expect = 0.003
Identities = 6/55 (10%), Positives = 26/55 (47%)
Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRM 198
++ F++P+++++ +Y+R+ + + R++ + + + I +
Sbjct: 211 SIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGI 265
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 35.7 bits (82), Expect = 0.008
Identities = 4/29 (13%), Positives = 19/29 (65%)
Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRH 172
++ F++P+++++ +Y+R+ + + +
Sbjct: 353 SIVSFYVPLVIMVFVYSRVFQEAKRQLQK 381
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 35.0 bits (80), Expect = 0.013
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 145 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVH 183
+F F +P+L+I + Y + LR++S R++ +
Sbjct: 187 IFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLR 225
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 34.1 bits (78), Expect = 0.020
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 48/167 (28%)
Query: 36 PLAGNV-LTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVP 94
P+A + ++ R + + + + + P + G Y E V C CS D
Sbjct: 140 PMAASKKMSHRRAFIMIIFVWLWSVLWAIGP--IFGWGAYTLEGVL---CNCSF---DYI 191
Query: 95 EMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLV 154
D + + FF P+L+
Sbjct: 192 SRDS------------TTRSNILCM------------------------FILGFFGPILI 215
Query: 155 IMLMYTRIGLRIRSRSR--HSLGKRVEGTVHGETKRSQSR-KSIIRM 198
I Y I + + + + ++ KR+ + + + + ++
Sbjct: 216 IFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKI 262
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 32.7 bits (75), Expect = 0.063
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 145 LFFFFIPMLVIMLMYTRIGLRIRSRSR 171
+ F IP++VI Y ++ ++ +
Sbjct: 210 VVHFIIPLIVIFFCYGQLVFTVKEAAA 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.071
Identities = 32/180 (17%), Positives = 52/180 (28%), Gaps = 65/180 (36%)
Query: 20 QE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECV--APITLTIQGDYVP 76
QE MG +L ++ A +V + R G+ + V P+ LTI
Sbjct: 1627 QEQGMGMDLY----KTSKAAQDV--WNRADNHFKDTYGFSILDIVINNPVNLTI------ 1674
Query: 77 EHVGPPICCCSVKLVD-VPEMDYFAHEGKGEVCVRGNNVFLGYFK--DPELNSIDELGWH 133
H G ++ + M + E V G FK + S +
Sbjct: 1675 -HFGGEK---GKRIRENYSAMIF-------ETIVDGKLKTEKIFKEINEHSTSYT---FR 1720
Query: 134 HTGDVGMWL-------PTLFFFFIPMLVIMLMYTRIGLRIRSRSR-----------HSLG 175
+ L P L L+ + + +S+ HSLG
Sbjct: 1721 SEKGL---LSATQFTQPALT------LMEKAAFEDL------KSKGLIPADATFAGHSLG 1765
Score = 26.9 bits (59), Expect = 5.7
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 25/90 (27%)
Query: 14 LVFKKVQEDMGGNLRLMLAGSAPLAGNVLT------------FLRCALGCLVI------- 54
+V K+ G LR L G+ + ++T F + +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 55 --EGYGQTECVAPITLTIQGDYVPEHVGPP 82
E Y T + +I D + + G P
Sbjct: 310 CYEAYPNTS----LPPSILEDSLENNEGVP 335
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 31.1 bits (71), Expect = 0.29
Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 28/121 (23%)
Query: 20 QEDMGGNLRLML-AGSAPLAGNVLTFLRCALGCLVIEGYGQTEC-----VAPIT-LTIQG 72
ED LR +L G +V LR +I YG TE + L
Sbjct: 715 GEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 73 DYVPEHVGPPICCCSVKLVD---------VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE 123
+P +G PI SV +++ GE+C+ G V GY +
Sbjct: 775 SSLP--IGKPISNASVYILNEQSQLQPFGAV----------GELCISGMGVSKGYVNRAD 822
Query: 124 L 124
L
Sbjct: 823 L 823
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 30.3 bits (68), Expect = 0.47
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 145 LFFFFIPMLVIMLMYTRIGLRIRSRSRH 172
+ +P +VI+ Y I ++ +
Sbjct: 215 MVGLILPGIVILSCYCIIISKLSHSGSN 242
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 29.5 bits (65), Expect = 0.74
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSI 195
F + +L I+++Y RI +R+R+ + + EG K ++ +I
Sbjct: 226 TVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTI 275
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 29.4 bits (67), Expect = 0.90
Identities = 37/143 (25%), Positives = 48/143 (33%), Gaps = 47/143 (32%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPITLTIQGDYVPEHVGPP 82
L+ AGSA V + I YG TE T G VP +G P
Sbjct: 297 TLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVP--IGAP 351
Query: 83 ICCCSVKLVD---------VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS---IDEL 130
I + +VD GE+C+ G + GY+K PEL S +D
Sbjct: 352 IQNTQIYIVDENLQLKSVGEA----------GELCIGGEGLARGYWKRPELTSQKFVD-- 399
Query: 131 GWHH----------TGDVGMWLP 143
+ TGD WL
Sbjct: 400 ---NPFVPGEKLYKTGDQARWLS 419
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 28.7 bits (65), Expect = 1.4
Identities = 27/135 (20%), Positives = 38/135 (28%), Gaps = 29/135 (21%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC-----VAPITLTIQGDYVPEHVGPP 82
G +I YG TE IT + +Y +G P
Sbjct: 268 HFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327
Query: 83 ICCCSVKLVD---------VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS---IDEL 130
++D GE+ V G V GY +PE +
Sbjct: 328 KPDSPTYIIDEDGKELSSGEQ----------GEIIVTGPAVSKGYLNNPEKTAEAFFTFK 377
Query: 131 G--WHHTGDVGMWLP 143
G +HTGD+G
Sbjct: 378 GQPAYHTGDIGSLTE 392
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 28.9 bits (63), Expect = 1.5
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 110 RGNNVFLGYFKDPELNS---------IDELGWH--HTGDVGMWLPTL 145
GY D +D LGW ++ + M++P L
Sbjct: 532 VETAPQDGYLADGSDLPPIRPGKAVELDLLGWSAIYSRQMEMFVPVL 578
>1pm4_A YPM; jelly roll fold, toxin; 1.75A {Yersinia pseudotuberculosis}
SCOP: b.135.1.1 PDB: 1poq_A
Length = 119
Score = 26.2 bits (57), Expect = 3.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 102 EGKGEVCVRGN 112
+GKGEVC+ GN
Sbjct: 14 QGKGEVCIIGN 24
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 27.2 bits (61), Expect = 4.2
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 23/129 (17%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE---CVAPITLTIQGDYVPEHVGPPIC 84
L + G + + ++ YG TE + + D +G P+
Sbjct: 298 YLGVGGEK-MTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRC--IGHPLG 354
Query: 85 CCSVKLVD------VPEMDYFAHEG-KGEVCVRGNNVFLGYFKDPELNS-IDELGW--HH 134
++ V +G GE+ + G+ V GY P+ D G +
Sbjct: 355 DSVAHVLAPGSNEHVK-------KGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYR 407
Query: 135 TGDVGMWLP 143
TGD+
Sbjct: 408 TGDIVRMDA 416
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin,
oxygen transport; HET: HEM; 2.15A {Bacillus subtilis}
SCOP: a.1.1.1
Length = 132
Score = 26.5 bits (58), Expect = 4.6
Identities = 9/45 (20%), Positives = 12/45 (26%)
Query: 128 DELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRH 172
L D+ F L +YT R+RH
Sbjct: 32 PLLKPIFPSDLTETARKQKQFLTQYLGGPPLYTEEHGHPMLRARH 76
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2,
protein ST initiative, midwest center for structural
genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Length = 211
Score = 26.3 bits (57), Expect = 6.6
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 89 KLVDVPEMDYFAHEGKGE 106
+ + VPEM++ +GKG+
Sbjct: 26 ERIFVPEMNFLMVDGKGD 43
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 26.2 bits (57), Expect = 7.8
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 73 DYVPEH--VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN---NVFLGYFKDPELNSI 127
D V V V + V D + V+ N + + YF + E
Sbjct: 216 DVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQVKRNDYVHALVAYF-NIEFTRC 273
Query: 128 DELGWHHTGDVGM---WLPTLFFFFIPMLV 154
+ T W T+F+ + V
Sbjct: 274 HKRTGFSTSPESPYTHWKQTVFYMEDYLTV 303
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 26.3 bits (59), Expect = 7.8
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPIT-LTIQGDYVPEHVGP 81
+L+ G +V L ++ GYG TE C +T ++ D +P +G
Sbjct: 280 QLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIP--IGK 337
Query: 82 PICCCSVKLVD-----VPEMDYFAHEG-KGEVCVRGNNVFLGYFKDPEL 124
I +V L+D + E GE+ G + GY D
Sbjct: 338 AIAGTAVLLLDEHGQEIAEP------DRAGEIVAFGAGLAQGYRNDAAR 380
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 26.2 bits (57), Expect = 8.0
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 25/129 (19%)
Query: 76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV---FLGYFKDPELNSIDELGW 132
+ +V ++ E D E + + + + +F D W
Sbjct: 319 IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWF-DVAFIGSIMTVW 377
Query: 133 HHTGDVGM---WLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRS 189
T W F P+ G + GT +
Sbjct: 378 LSTAPTEPLTHWYQVRCLFQSPLFAKA------------------GDTLSGTCLLIANKR 419
Query: 190 QSRKSIIRM 198
QS I
Sbjct: 420 QSYDISIVA 428
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.144 0.458
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,115,944
Number of extensions: 183623
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 57
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.8 bits)