RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14311
(199 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 86.9 bits (214), Expect = 1e-20
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
+ G+ + + +GYG TE + I +T +GD P VG +
Sbjct: 308 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 367
Query: 88 VKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMWLPTL 145
K+VD+ +GE+CVRG + GY +PE ID+ GW H+GD+ W
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427
Query: 146 FFFFI 150
FF +
Sbjct: 428 HFFIV 432
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 80.1 bits (197), Expect = 2e-18
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 12/136 (8%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQGDY--VPEHVG 80
+LR++ + P+ + +G C V++ + QTE + + G
Sbjct: 375 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSAT 434
Query: 81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN--NVFLGYFKDPELNS----IDELGWHH 134
P LVD E +G + + + F D E +
Sbjct: 435 RPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493
Query: 135 TGDVGMWLPTLFFFFI 150
+GD +++
Sbjct: 494 SGDGARRDEDGYYWIT 509
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 79.2 bits (194), Expect = 4e-18
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV---------- 75
LR ++ G + +++ +G V +GYG TE + ++
Sbjct: 287 TLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 345
Query: 76 -PEHVGPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELN--SIDEL 130
G PI +++ D E +GK GEV ++G + GY+ + E ++
Sbjct: 346 LKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD 404
Query: 131 GWHHTGDVGMWLPTLFFFFI 150
G+ TGD+ +W +
Sbjct: 405 GFFRTGDIAVWDEEGYVEIK 424
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 68.7 bits (167), Expect = 2e-14
Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 13/138 (9%)
Query: 26 NLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQGDYVPEH---V 79
+LR + + P+A V + +G +++ Y QTE + + + G P
Sbjct: 362 SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSA 421
Query: 80 GPPICCCSVKLVDVPEMDYFA-HEGKGEVCVRGN--NVFLGYFKDPELN----SIDELGW 132
P ++D + +G + V+ + +K+ + G+
Sbjct: 422 SFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY 481
Query: 133 HHTGDVGMWLPTLFFFFI 150
+ TGD + + +
Sbjct: 482 YFTGDGAAKDKDGYIWIL 499
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 56.4 bits (135), Expect = 3e-10
Identities = 34/134 (25%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 28 RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPIC 84
L+ AGSA V + I YG TE T + H +G PI
Sbjct: 281 TLITAGSATSPSLVN---KWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQ 337
Query: 85 CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--------IDELGWHHTG 136
+ +VD + + GE+C+ G + GY+K PEL S + + TG
Sbjct: 338 NTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG 396
Query: 137 DVGMWLPTLFFFFI 150
D WL ++
Sbjct: 397 DQARWLSDGNIEYL 410
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 47.3 bits (111), Expect = 3e-07
Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 2/133 (1%)
Query: 20 QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV 79
++D+ L + G+ A L V L + +
Sbjct: 294 RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ 353
Query: 80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGD 137
G P+ V G + RG GY+K E N S E G++ TGD
Sbjct: 354 GKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGD 413
Query: 138 VGMWLPTLFFFFI 150
+ +
Sbjct: 414 IVRLTRDGYIVVE 426
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 47.3 bits (111), Expect = 4e-07
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 1/141 (0%)
Query: 11 WDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTI 70
+LR + A + VL + L + YG TE + + +
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQ 317
Query: 71 QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDE 129
G V++ + E + ++ F+GY P+ + +
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 130 LGWHHTGDVGMWLPTLFFFFI 150
GW+ T DV +W P +
Sbjct: 378 DGWYRTSDVAVWTPEGTVRIL 398
>d1pm4a_ b.135.1.1 (A:) Superantigen (mitogen) Ypm {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 117
Score = 26.6 bits (58), Expect = 1.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 102 EGKGEVCVRGN 112
+GKGEVC+ GN
Sbjct: 12 QGKGEVCIIGN 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.144 0.458
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 775,480
Number of extensions: 35948
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 15
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.8 bits)