BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14313
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 85 QSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNE---WLFMIAGGFYYV 141
Q+ + + + AVV F +CW P+H +RL++ Y D Q+ L + + +M+ Y
Sbjct: 402 QALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYA 461
Query: 142 SSTVNPILYNVMSVKYRQAFKQTLCC 167
SS +NPILYN++S +RQ F TL C
Sbjct: 462 SSAINPILYNLVSANFRQVFLSTLAC 487
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
Y + L + + S+ RYLAICHP + + R + I+ +WL L A P
Sbjct: 122 YATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIP 171
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98
F+ F IP++VI Y ++ ++ + ++ K + RM+ +V
Sbjct: 209 FVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ---------QESATTQKAEKEVTRMVIIMV 259
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTV-NPILYNVMSVKY 157
F +CW P+ A Y++ F + FM F+ +S V NP++Y +M+ ++
Sbjct: 260 IAFLICWLPY-AGVAFYIFTHQGSCFGPI----FMTIPAFFAKTSAVYNPVIYIMMNKQF 314
Query: 158 RQAFKQTLCCRGGSHGSFARDQSS 181
R TLCC G D++S
Sbjct: 315 RNCMVTTLCCGKNPLGD---DEAS 335
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
++ ++V ++ERY+ +C P+ ++ G AI +A W+ CA P
Sbjct: 125 ALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAP 171
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98
F+ F IP++VI Y ++ ++ + ++ K + RM+ +V
Sbjct: 208 FVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ---------QESATTQKAEKEVTRMVIIMV 258
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTV-NPILYNVMSVKY 157
F +CW P+ A Y++ F + FM F+ +S V NP++Y +M+ ++
Sbjct: 259 IAFLICWLPY-AGVAFYIFTHQGSCFGPI----FMTIPAFFAKTSAVYNPVIYIMMNKQF 313
Query: 158 RQAFKQTLCCRGGSHGSFARDQSS 181
R TLCC G D++S
Sbjct: 314 RNCMVTTLCCGKNPLGD---DEAS 334
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
++ ++V ++ERY+ +C P+ ++ G AI +A W+ CA P
Sbjct: 124 ALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAP 170
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98
F+ F IP++VI Y ++ ++ + ++ K + RM+ +V
Sbjct: 209 FVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ---------QESATTQKAEKEVTRMVIIMV 259
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTV-NPILYNVMSVKY 157
F +CW P+ A Y++ F + FM F+ +S V NP++Y +M+ ++
Sbjct: 260 IAFLICWLPY-AGVAFYIFTHQGSCFGPI----FMTIPAFFAKTSAVYNPVIYIMMNKQF 314
Query: 158 RQAFKQTLCCRGGSHGSFARDQSS 181
R TLCC G D++S
Sbjct: 315 RNCMVTTLCCGKNPLGD---DEAS 335
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
++ ++V ++ERY+ +C P+ ++ G AI +A W+ CA P
Sbjct: 125 ALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAP 171
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98
F+ F IP++VI Y ++ ++ + ++ K + RM+ +V
Sbjct: 209 FVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ---------QESATTQKAEKEVTRMVIIMV 259
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTV-NPILYNVMSVKY 157
F +CW P+ A Y++ F + FM F+ +S V NP++Y +M+ ++
Sbjct: 260 IAFLICWLPY-AGVAFYIFTHQGSDFGPI----FMTIPAFFAKTSAVYNPVIYIMMNKQF 314
Query: 158 RQAFKQTLCCRGGSHGSFARDQSS 181
R TLCC G D++S
Sbjct: 315 RNCMVTTLCCGKNPLGD---DEAS 335
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
++ ++V ++ERY+ +C P+ ++ G AI +A W+ CA P
Sbjct: 125 ALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAP 171
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98
F+ F IP++VI Y ++ ++ + ++ K + RM+ +V
Sbjct: 208 FVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ---------QESATTQKAEKEVTRMVIIMV 258
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTV-NPILYNVMSVKY 157
F +CW P+ A Y++ F + FM F+ +S V NP++Y +M+ ++
Sbjct: 259 IAFLICWLPY-AGVAFYIFTHQGSDFGPI----FMTIPAFFAKTSAVYNPVIYIMMNKQF 313
Query: 158 RQAFKQTLCCRGGSHGSFARDQSS 181
R TLCC G D++S
Sbjct: 314 RNCMVTTLCCGKNPLGD---DEAS 334
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
++ ++V ++ERY+ +C P+ ++ G AI +A W+ CA P
Sbjct: 124 ALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAP 170
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98
F+ F IP++VI Y ++ ++ + ++ K + RM+ V
Sbjct: 209 FVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ---------QESATTQKAEKEVTRMVIIYV 259
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTV-NPILYNVMSVKY 157
F +CW P+ A Y++ F + FM F+ +S V NP++Y +M+ ++
Sbjct: 260 IAFLICWLPY-AGVAFYIFTHQGSCFGPI----FMTIPAFFAKTSAVYNPVIYIMMNKQF 314
Query: 158 RQAFKQTLCCRGGSHGSFARDQSS 181
R TLCC G D++S
Sbjct: 315 RNCMVTTLCCGKNPLGD---DEAS 335
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
++ ++V ++ERY+ +C P+ ++ G AI +A W+ CA P
Sbjct: 125 ALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAP 171
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 32 VPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSI- 90
VPM + + F FF +LV +L+ + LRI +R L + + GE RS +K +
Sbjct: 172 VPMNYMVY-FNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVH 230
Query: 91 -IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPIL 149
+ L +V F LCW P H + D + A L WL +A + +S VNP +
Sbjct: 231 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH-APL--WLMYLAIVLSHTNSVVNPFI 287
Query: 150 YNVMSVKYRQAFKQTLCCRGGSHGSFARDQSSFRETMVD 188
Y ++RQ F++ + SH R Q F+ +
Sbjct: 288 YAYRIREFRQTFRKII----RSH--VLRQQEPFKAAAAE 320
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGF 268
+S+ +++A +++RY+AI PL + RA IIA+ W+ F
Sbjct: 90 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 32 VPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSI- 90
VPM + + F FF +LV +L+ + LRI +R L + + GE RS +K +
Sbjct: 172 VPMNYMVY-FNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVH 230
Query: 91 -IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPIL 149
+ L +V F LCW P H + D + A L WL +A + +S VNP +
Sbjct: 231 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH-APL--WLMYLAIVLSHTNSVVNPFI 287
Query: 150 YNVMSVKYRQAFKQTL 165
Y ++RQ F++ +
Sbjct: 288 YAYRIREFRQTFRKII 303
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGF 268
+S+ +++A +++RY+AI PL + RA IIA+ W+ F
Sbjct: 90 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 133
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 32 VPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSII 91
VPM + + F FF +LV +L+ + LRI + +R L + + GE RS +K +
Sbjct: 172 VPMNYMVY-FNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERARSTLQKEVH 230
Query: 92 RMLTAVVTT--FFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPIL 149
+A + F LCW P H + D + A L WL +A + +S VNP +
Sbjct: 231 AAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSH-APL--WLMYLAIVLAHTNSVVNPFI 287
Query: 150 YNVMSVKYRQAFKQTL 165
Y ++RQ F++ +
Sbjct: 288 YAYRIREFRQTFRKII 303
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGF 268
+S+ +++A +++RY+AI PL + RA IIA+ W+ F
Sbjct: 90 SSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSF 133
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 21/129 (16%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIR------MLTA 96
F+IP+L+++ + LR+ ++ + K + +KR SR ++R L
Sbjct: 186 FYIPLLIMIF----VALRVYREAKEQIRK-----IDRASKRKTSRVMLMREHKALKTLGI 236
Query: 97 VVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVK 156
++ F LCW PF ++ ++ RD + +WLF+ Y +S +NPI+Y S
Sbjct: 237 IMGVFTLCWLPFFLVNIVNVFNRD-----LVPDWLFVAFNWLGYANSAMNPIIY-CRSPD 290
Query: 157 YRQAFKQTL 165
+R+AFK+ L
Sbjct: 291 FRKAFKRLL 299
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFF 102
F+IP+L+++ + LR+ ++ + K + + K++ + L ++ F
Sbjct: 186 FYIPLLIMIF----VALRVYREAKEQIRKIDRASKRKRVMLMREHKAL-KTLGIIMGVFT 240
Query: 103 LCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFK 162
LCW PF ++ ++ RD + +WLF+ Y +S +NPI+Y S +R+AFK
Sbjct: 241 LCWLPFFLVNIVNVFNRD-----LVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFK 294
Query: 163 QTL 165
+ L
Sbjct: 295 RLL 297
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 8 ILFIGSGEILYESGFCGMLEVPRGV----PMYELS-FLFFFFIPMLVIMLMYTRIGLRIR 62
+ +GS ++ E C ++E+P P++ + FLF F +P+LVI + Y+ + R+R
Sbjct: 259 VAIMGSAQVEDEEIEC-LVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLR 317
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQ 122
G R+ + G ++ ++ + I R++ VV F CW P Q + Q
Sbjct: 318 -------GVRL---LSGSREKDRNLRRITRLVLVVVAVFVGCWTP--VQVFVLAQGLGVQ 365
Query: 123 YFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCC 167
+ + YV+S +NPILY + ++ F++ CC
Sbjct: 366 PSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK-FCC 409
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
+TS T+ A S++RY+AICHP+ + + +A + +W + P A+ +
Sbjct: 209 FTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVE 268
Query: 284 D 284
D
Sbjct: 269 D 269
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVH----------GETKRSQSRKS--- 89
F++P+++++ +Y+R+ + R + K EG H G T R S
Sbjct: 208 FYVPLVIMVFVYSRV-FQEAKRQLQKIDKS-EGRFHVQNLSQVEQDGRTGHGLRRSSKFC 265
Query: 90 -----IIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSST 144
++ L ++ TF LCW PF ++++ + + + ++++ YV+S
Sbjct: 266 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSG 320
Query: 145 VNPILYNVMSVKYRQAFKQTLCCRGGSHGSFARDQSS 181
NP++Y S +R AF++ LC R S ++ SS
Sbjct: 321 FNPLIY-CRSPDFRIAFQELLCLRRSSLKAYGNGYSS 356
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVH----------GETKRSQSRKS--- 89
F++P+++++ +Y+R+ + R + K EG H G T R S
Sbjct: 357 FYVPLVIMVFVYSRV-FQEAKRQLQKIDKS-EGRFHVQNLSQVEQDGRTGHGLRRSSKFC 414
Query: 90 -----IIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSST 144
++ L ++ TF LCW PF ++++ + + + ++++ YV+S
Sbjct: 415 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSG 469
Query: 145 VNPILYNVMSVKYRQAFKQTLCCRGGSHGSFARDQSS 181
NP++Y S +R AF++ LC R S ++ SS
Sbjct: 470 FNPLIY-CRSPDFRIAFQELLCLRRSSLKAYGNGYSS 505
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVH----------GETKRSQSRKS--- 89
F++P+++++ +Y+R+ + R + K EG H G T R S
Sbjct: 209 FYVPLVIMVFVYSRV-FQEAKRQLQKIDKS-EGRFHVQNLSQVEQDGRTGHGLRRSSKFC 266
Query: 90 -----IIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSST 144
++ L ++ TF LCW PF ++++ + + + ++++ YV+S
Sbjct: 267 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSG 321
Query: 145 VNPILYNVMSVKYRQAFKQTLCCRGGSHGSFARDQSS 181
NP++Y S +R AF++ LC R S ++ SS
Sbjct: 322 FNPLIY-CRSPDFRIAFQELLCLRRSSLKAYGNGYSS 357
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVH----------GETKRSQSRKS--- 89
F++P+++++ +Y+R+ + R + K EG H G T R S
Sbjct: 185 FYVPLVIMVFVYSRV-FQEAKRQLQKIDKS-EGRFHVQNLSQVEQDGRTGHGLRRSSKFC 242
Query: 90 -----IIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSST 144
++ L ++ TF LCW PF ++++ + + + ++++ YV+S
Sbjct: 243 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSG 297
Query: 145 VNPILYNVMSVKYRQAFKQTLCCRGGSHGSFARDQSS 181
NP++Y S +R AF++ LC R S ++ SS
Sbjct: 298 FNPLIY-CRSPDFRIAFQELLCLRRSSLKAYGNGYSS 333
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQ 122
+R++ + GT ++ RK+ + L ++ F LCW P+ ++ + ++
Sbjct: 345 NRAKRVITTFRTGTWDAYLHMNRERKAA-KQLGFIMAAFILCWIPYFIFFMVIAFCKNC- 402
Query: 123 YFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGSF 175
NE L M Y++ST+NP++Y + + +++ FK+ L R G + F
Sbjct: 403 ----CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGENLYF 451
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFF 102
F++P+++++ +Y+R+ ++ L K K ++ L ++ TF
Sbjct: 180 FYVPLVIMVFVYSRV----FQEAKRQLQKI--------DKFCLKEHKALKTLGIIMGTFT 227
Query: 103 LCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFK 162
LCW PF ++++ + + + ++++ YV+S NP++Y S +R AF+
Sbjct: 228 LCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQ 281
Query: 163 QTLCCRGGSHGSFARDQSS 181
+ LC R S ++ SS
Sbjct: 282 ELLCLRRSSLKAYGNGYSS 300
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQ 122
+R++ + GT ++ ++ + I R++ VV F +CW P H L+ S
Sbjct: 367 NRAKRVITTFRTGTWDAYREKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSTSH 426
Query: 123 YFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQ 163
A+L+ + F IA G Y +S++NPILY + +++ F+
Sbjct: 427 STAALSSYYFCIALG--YTNSSLNPILYAFLDENFKRCFRD 465
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLF 266
+TS+ T+ S++RY+A+CHP+ + +A I +WL
Sbjct: 106 FTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLL 148
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRS 63
F+F F IP+L+I++ YT + LR++S
Sbjct: 194 FIFAFVIPVLIIIVCYTLMILRLKS 218
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 87 RKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARD---SQYFASLNEWLFMIAGGFYYVSS 143
K +M+ V+ F +CW PF ++ + + S S WL YV+S
Sbjct: 396 EKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLG-------YVNS 448
Query: 144 TVNPILYNVMSVKYRQAFKQTLCC 167
+NP++Y ++++R+AF + L C
Sbjct: 449 ALNPVIYTTFNIEFRKAFLKILSC 472
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 26/145 (17%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRH--SLGKRVEGTVHGETKRSQSRKS----IIR 92
F+ FF P+L+I Y I + + + + ++ KR+ E +++Q+ + + +
Sbjct: 205 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAK---ELRKAQAGANAEMRLAK 261
Query: 93 MLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGG----FYYVSSTVNPI 148
+ +V+ F L W+P+ L+ F L EW+ A F S+ NP+
Sbjct: 262 ISIVIVSQFLLSWSPYAVVALL-------AQFGPL-EWVTPYAAQLPVMFAKASAIHNPM 313
Query: 149 LYNVMSVKYRQAFKQTL-----CCR 168
+Y+V K+R+A QT CC+
Sbjct: 314 IYSVSHPKFREAISQTFPWVLTCCQ 338
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 220 GKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCA 271
G + S++T+ S++RY I P+ + RRA +I +WL+ L A
Sbjct: 116 GIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA 167
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 40 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGE-TKRSQSRKSIIRMLTAVV 98
+ +F+P+LVI YT +G+ + + G ++ +++ +++M+ VV
Sbjct: 202 VLIYFLPLLVIGYAYTVVGITL-------WASEIPGDSSDRYHEQVSAKRKVVKMMIVVV 254
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYR 158
TF +CW PFH L+ Y Y + +++ S+ NPI+Y ++ ++R
Sbjct: 255 CTFAICWLPFHIFFLL-PYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFR 313
Query: 159 QAFKQTL-CCRGGSHGSF 175
FK CC S G +
Sbjct: 314 LGFKHAFRCCPFISAGDY 331
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTT 279
+ S+ ++ A + +RY+AI HPL + + +I V+W+ L A P Y+T
Sbjct: 117 FASIYSMTAVAFDRYMAIIHPLQPRLSATATKV--VICVIWVLALLLAFPQGYYST 170
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 26/145 (17%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRH--SLGKRVEGTVHGETKRSQSRKS----IIR 92
F+ FF P+L+I Y I + + + + ++ KR+ E +++Q+ + + +
Sbjct: 204 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAK---ELRKAQAGANAEMRLAK 260
Query: 93 MLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGG----FYYVSSTVNPI 148
+ +V+ F L W+P+ L+ F L EW+ A F S+ NP+
Sbjct: 261 ISIVIVSQFLLSWSPYAVVALL-------AQFGPL-EWVTPYAAQLPVMFAKASAIHNPM 312
Query: 149 LYNVMSVKYRQAFKQTL-----CCR 168
+Y+V K+R+A QT CC+
Sbjct: 313 IYSVSHPKFREAISQTFPWVLTCCQ 337
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 220 GKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCA 271
G + S++T+ S++RY I P+ + RRA +I +WL+ L A
Sbjct: 115 GIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA 166
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 70 GKRVEGTVHGET----KRSQSRKSIIRMLTAVVTTFFLCWAPFH----AQRLIYLYARDS 121
KRV T T ++ +S + I RM+ VV F +CWAP H L+ + RD
Sbjct: 354 AKRVITTFRTGTWDAYEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDINRRDP 413
Query: 122 QYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLC 166
A+L+ IA G Y +S++NP+LY + +++ F+Q LC
Sbjct: 414 LVVAALH---LCIALG--YANSSLNPVLYAFLDENFKRCFRQ-LC 452
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
+TS+ T+ S++RY+A+CHP+ + +A I +W+ P V
Sbjct: 98 FTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTQ-- 155
Query: 284 DFPPGKYTTINYVDYPPP 301
P + + +P P
Sbjct: 156 ---PRDGAVVCMLQFPSP 170
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRS 63
FLF F +P+L+I + Y + LR+RS
Sbjct: 183 FLFAFVVPILIITVCYGLMLLRLRS 207
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 87 RKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVN 146
K + R + A++ F + WAP++ LI + + ++ I Y++ST+N
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCA-----PCIPNTVWTIGYWLCYINSTIN 437
Query: 147 PILYNVMSVKYRQAFKQTLCCRGGSHGS 174
P Y + + +++ FK L C + G+
Sbjct: 438 PACYALCNATFKKTFKHLLMCHYKNIGA 465
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 80 ETKRSQSRKSI--IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGG 137
E RS +K + + L +V F LCW P H + D + A L WL +A
Sbjct: 340 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH-APL--WLMYLAIV 396
Query: 138 FYYVSSTVNPILYNVMSVKYRQAFKQTL 165
+ +S VNP +Y ++RQ F++ +
Sbjct: 397 LSHTNSVVNPFIYAYRIREFRQTFRKII 424
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGF 268
+S+ +++A +++RY+AI PL + RA IIA+ W+ F
Sbjct: 115 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 158
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 86 SRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDS--QYFASLNEWLFMIAGGFYYVSS 143
K + L+A++ F + W P++ L+ + + + +L WL Y++S
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLC-------YINS 420
Query: 144 TVNPILYNVMSVKYRQAFKQTLCCR 168
TVNP+ Y + + +R FK L C+
Sbjct: 421 TVNPVCYALCNKTFRTTFKTLLLCQ 445
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTT--INYV 283
SV+ ++ S +RY +I PL A +RA +I + W+ F+ P ++ +
Sbjct: 99 SVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKR 158
Query: 284 DFPPGK 289
PPG+
Sbjct: 159 TVPPGE 164
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 91 IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILY 150
++ L ++ TF LCW PF ++++ + + + ++++ YV+S NP++Y
Sbjct: 408 LKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSGFNPLIY 462
Query: 151 NVMSVKYRQAFKQTLCCRGGSHGSFARDQSS 181
S +R AF++ LC R S ++ SS
Sbjct: 463 -CRSPDFRIAFQELLCLRRSSLKAYGNGYSS 492
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 91 IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILY 150
++ L ++ TF LCW PF ++++ + + + ++++ YV+S NP++Y
Sbjct: 407 LKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSGFNPLIY 461
Query: 151 NVMSVKYRQAFKQTLCCRGGSHGSFARDQSS 181
S +R AF++ LC R S ++ SS
Sbjct: 462 -CRSPDFRIAFQELLCLRRSSLKAYGNGYSS 491
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 80 ETKRSQSRKSI--IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGG 137
+ RS +K + + L +V F LCW P H + D + A L WL +A
Sbjct: 381 DAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH-APL--WLMYLAIV 437
Query: 138 FYYVSSTVNPILYNVMSVKYRQAFKQTL 165
+ +S VNP +Y ++RQ F++ +
Sbjct: 438 LSHTNSVVNPFIYAYRIREFRQTFRKII 465
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGF 268
+S+ +++A +++RY+AI PL + RA IIA+ W+ F
Sbjct: 105 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF 148
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 70 GKRVEGTVHGET----KRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFA 125
KRV T T ++ ++ + I RM+ VV F +CW P H +I +
Sbjct: 357 AKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTF 416
Query: 126 SLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQ 163
W F IA G Y +S +NP+LY + +++ F++
Sbjct: 417 QTVSWHFCIALG--YTNSCLNPVLYAFLDENFKRCFRE 452
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINY 282
+TS+ T+ S++RY+A+CHP+ + R A + W+ P T Y
Sbjct: 101 FTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKY 159
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 91 IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILY 150
++ L ++ TF LCW PF ++++ + + + ++++ YV+S NP++Y
Sbjct: 408 LKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSGFNPLIY 462
Query: 151 NVMSVKYRQAFKQTLCCRGGS 171
S +R AF++ LC R S
Sbjct: 463 -CRSPDFRIAFQELLCLRRSS 482
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 91 IRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILY 150
++ L ++ TF LCW PF ++++ + + + ++++ YV+S NP++Y
Sbjct: 376 LKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSGFNPLIY 430
Query: 151 NVMSVKYRQAFKQTLCCRGGS 171
S +R AF++ LC R S
Sbjct: 431 -CRSPDFRIAFQELLCLRRSS 450
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/117 (17%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFH------AQRLIYL 116
+R++ + GT + ++ ++ ++ FF CW P++ + L+ +
Sbjct: 384 NRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEI 443
Query: 117 YARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTL--CCRGGS 171
+ ++ ++++W+ I + +NPILY + K++ + + L RG S
Sbjct: 444 IKQGCEFENTVHKWI-SITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSVSRGSS 499
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
Y+SV + S++RYLAI H S L + +W+ L P ++ ++
Sbjct: 131 YSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEA 190
Query: 284 D 284
D
Sbjct: 191 D 191
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/109 (16%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFH------AQRLIYL 116
+R++ + GT + ++ ++ ++ FF CW P++ + L+ +
Sbjct: 384 NRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEI 443
Query: 117 YARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTL 165
+ ++ ++++W+ I + +NPILY + K++ + + L
Sbjct: 444 IKQGCEFENTVHKWI-SITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
Y+SV + S++RYLAI H S L + +W+ L P ++ ++
Sbjct: 131 YSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEA 190
Query: 284 D 284
D
Sbjct: 191 D 191
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYAR--- 119
+R++ + GT RS ++++ + V++ F CWAP L+ + +
Sbjct: 392 NRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKT 451
Query: 120 -DSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAF 161
D + A E+ ++A ++S NPI+Y + + + R+AF
Sbjct: 452 CDILFRA---EYFLVLA----VLNSGTNPIIYTLTNKEMRRAF 487
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 79 GETKRSQSRKSIIRMLTAVVTTFFLCWAPFH------AQRLIYLYARDSQYFASLNEWLF 132
G KR + ++I +L FF CW P++ + L+ + + ++ ++++W+
Sbjct: 402 GHQKRKALKPTVILILA-----FFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWI- 455
Query: 133 MIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTL 165
I + +NPILY + K++ + + L
Sbjct: 456 SITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 488
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
Y+SV + S++RYLAI H S L + +W+ L P ++ ++
Sbjct: 131 YSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEA 190
Query: 284 D 284
D
Sbjct: 191 D 191
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 25/135 (18%)
Query: 41 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTT 100
F F +P+ V++ Y G +R+ + +G++ +R++ AVV
Sbjct: 181 FGFIVPLFVMLFCY---GFTLRTLFKAHMGQKHRA---------------MRVIFAVVLI 222
Query: 101 FFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFY------YVSSTVNPILYNVMS 154
F LCW P++ L R +Q E I ++ S +NPI+Y +
Sbjct: 223 FLLCWLPYNLVLLADTLMR-TQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIG 281
Query: 155 VKYRQAFKQTLCCRG 169
+R F + L G
Sbjct: 282 QNFRHGFLKILAMHG 296
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAP------FHAQRLIYL 116
+R++ + GT RS+ +++ + AV F +C+ P H L +
Sbjct: 362 NRAKRVITTFRTGTWDAYANRSKKSRALF-LSAAVFCIFIICFGPTNVLLIAHYSFLSHT 420
Query: 117 YARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGS 174
++ YFA +++ +S ++P++Y S + ++ LCC+ S S
Sbjct: 421 STTEAAYFA------YLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKESSDPS 472
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPF 274
Y S+L + S++R+LA+ +P+ S + L RA +W P
Sbjct: 105 YASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPL 155
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 27 EVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVE 74
E VP+ +F F+ ML++M + + +R+ + HSL ++++
Sbjct: 57 ETSLNVPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIK 104
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 131 LFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQ 163
+F A ++STVNPI+Y + S R AF+
Sbjct: 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRS 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,028,178
Number of Sequences: 62578
Number of extensions: 341397
Number of successful extensions: 878
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 100
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)