Query psy14313
Match_columns 317
No_of_seqs 364 out of 3037
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 16:41:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 2.2E-21 4.7E-26 168.9 13.1 131 32-169 207-337 (423)
2 PHA03235 DNA packaging protein 99.8 1.4E-20 3E-25 172.2 14.7 116 34-167 204-323 (409)
3 PHA03234 DNA packaging protein 99.8 7.9E-20 1.7E-24 163.6 14.2 108 40-165 203-314 (338)
4 PHA02834 chemokine receptor-li 99.8 2.4E-19 5.3E-24 160.0 10.9 115 38-170 193-312 (323)
5 PHA02638 CC chemokine receptor 99.7 2.4E-17 5.2E-22 151.5 12.9 112 38-168 277-398 (417)
6 PHA03087 G protein-coupled che 99.7 4.5E-16 9.7E-21 139.9 13.7 115 38-169 207-325 (335)
7 KOG4220|consensus 99.6 3E-16 6.4E-21 136.9 3.5 84 85-173 410-493 (503)
8 PF00001 7tm_1: 7 transmembran 99.5 1.5E-13 3.2E-18 117.6 10.2 123 21-150 134-257 (257)
9 KOG4219|consensus 99.2 5.2E-12 1.1E-16 110.7 3.3 94 206-301 102-195 (423)
10 KOG2087|consensus 99.2 4.9E-13 1.1E-17 115.8 -3.6 138 9-166 166-305 (363)
11 PF10324 7TM_GPCR_Srw: Serpent 99.1 2E-09 4.2E-14 96.1 12.6 119 42-168 200-318 (318)
12 KOG4220|consensus 98.9 1.3E-09 2.7E-14 96.0 4.3 92 208-302 99-191 (503)
13 PHA03234 DNA packaging protein 98.9 1.6E-09 3.5E-14 97.2 5.0 87 208-300 101-187 (338)
14 PHA02638 CC chemokine receptor 98.8 6.8E-09 1.5E-13 95.8 6.0 93 208-300 164-261 (417)
15 PHA03087 G protein-coupled che 98.8 5E-09 1.1E-13 94.2 4.8 89 208-301 107-195 (335)
16 PHA03235 DNA packaging protein 98.8 8.5E-09 1.8E-13 94.8 6.3 91 209-300 102-194 (409)
17 PHA02834 chemokine receptor-li 98.7 1.4E-08 3.1E-13 90.7 6.2 71 208-279 94-164 (323)
18 PF00001 7tm_1: 7 transmembran 98.7 7.3E-09 1.6E-13 88.4 4.2 89 210-301 55-143 (257)
19 PF05296 TAS2R: Mammalian tast 98.5 2E-06 4.4E-11 76.0 12.9 121 37-169 183-303 (303)
20 PF10320 7TM_GPCR_Srsx: Serpen 98.2 8.4E-06 1.8E-10 70.4 10.1 126 20-165 132-257 (257)
21 PF10323 7TM_GPCR_Srv: Serpent 98.1 9E-05 1.9E-09 64.9 13.0 116 39-167 168-283 (283)
22 PF10321 7TM_GPCR_Srt: Serpent 97.9 9.4E-05 2E-09 65.4 9.3 116 34-170 195-310 (313)
23 PF05462 Dicty_CAR: Slime mold 97.5 0.0017 3.7E-08 57.2 12.3 69 94-169 204-272 (303)
24 KOG2087|consensus 97.5 0.00015 3.3E-09 63.7 5.7 83 209-298 101-183 (363)
25 KOG4193|consensus 97.0 0.019 4.2E-07 55.2 14.1 126 21-171 460-585 (610)
26 PF10328 7TM_GPCR_Srx: Serpent 96.8 0.00072 1.6E-08 59.0 2.4 54 223-276 78-131 (274)
27 PF10320 7TM_GPCR_Srsx: Serpen 96.8 0.00091 2E-08 57.8 3.0 59 210-268 59-117 (257)
28 PF10327 7TM_GPCR_Sri: Serpent 96.7 0.0091 2E-07 52.8 8.7 107 37-160 196-302 (303)
29 PF10328 7TM_GPCR_Srx: Serpent 96.7 0.025 5.4E-07 49.3 11.0 107 43-164 166-272 (274)
30 PF10317 7TM_GPCR_Srd: Serpent 96.5 0.043 9.4E-07 48.3 11.4 98 49-163 195-292 (292)
31 PF03402 V1R: Vomeronasal orga 96.4 0.0077 1.7E-07 51.8 6.0 130 21-161 133-263 (265)
32 PF11970 Git3_C: G protein-cou 96.3 0.017 3.7E-07 39.5 5.9 69 84-156 4-73 (76)
33 KOG4564|consensus 96.1 0.025 5.5E-07 52.3 7.9 130 19-172 295-424 (473)
34 PF10318 7TM_GPCR_Srh: Serpent 95.9 0.2 4.3E-06 44.3 12.6 113 38-167 189-302 (302)
35 PF02101 Ocular_alb: Ocular al 95.8 0.076 1.6E-06 47.4 9.3 26 90-115 242-267 (405)
36 PF03383 Serpentine_r_xa: Caen 95.5 0.031 6.6E-07 43.7 5.1 92 225-317 57-148 (153)
37 PF10326 7TM_GPCR_Str: Serpent 93.0 0.052 1.1E-06 48.1 1.8 111 34-162 196-307 (307)
38 PF10323 7TM_GPCR_Srv: Serpent 92.5 0.027 5.9E-07 49.3 -0.7 59 218-276 81-140 (283)
39 PF03125 Sre: C. elegans Sre G 91.4 11 0.00024 34.3 15.1 41 129-169 283-323 (365)
40 PF10324 7TM_GPCR_Srw: Serpent 90.9 0.24 5.1E-06 44.1 3.5 66 216-281 82-149 (318)
41 PF02118 Srg: Srg family chemo 90.2 7.2 0.00016 33.7 12.1 102 39-160 173-274 (275)
42 PF10319 7TM_GPCR_Srj: Serpent 88.3 7 0.00015 34.5 10.4 71 84-160 238-309 (310)
43 PF04789 DUF621: Protein of un 88.2 8.3 0.00018 33.3 10.3 111 31-163 184-294 (305)
44 PF13853 7tm_4: Olfactory rece 87.9 0.0025 5.3E-08 49.9 -10.2 86 9-113 27-119 (144)
45 PF10316 7TM_GPCR_Srbc: Serpen 82.7 1.3 2.9E-05 38.5 3.3 36 225-260 94-129 (273)
46 PF05462 Dicty_CAR: Slime mold 74.8 6.9 0.00015 34.6 5.4 78 209-297 72-149 (303)
47 PF11710 Git3: G protein-coupl 73.3 5.5 0.00012 32.9 4.1 38 207-244 69-106 (201)
48 PF10322 7TM_GPCR_Sru: Serpent 71.7 13 0.00027 33.1 6.2 53 43-101 204-256 (307)
49 PF02117 7TM_GPCR_Sra: Serpent 59.3 1.2E+02 0.0025 27.2 10.1 41 208-248 97-137 (328)
50 PF11710 Git3: G protein-coupl 57.6 21 0.00045 29.5 4.7 52 13-66 148-199 (201)
51 PF04505 Dispanin: Interferon- 51.3 62 0.0013 22.4 5.5 34 30-63 16-49 (82)
52 PF01534 Frizzled: Frizzled/Sm 50.9 23 0.0005 31.8 4.1 102 205-316 87-188 (328)
53 PF10292 7TM_GPCR_Srab: Serpen 49.8 28 0.00061 31.0 4.6 59 210-269 94-152 (324)
54 KOG2575|consensus 49.7 19 0.00042 32.9 3.4 27 86-112 253-279 (510)
55 PF00002 7tm_2: 7 transmembran 45.5 6.9 0.00015 33.0 0.0 21 89-109 195-215 (242)
56 PF10292 7TM_GPCR_Srab: Serpen 43.2 2.4E+02 0.0052 25.1 14.3 82 83-166 224-305 (324)
57 PF02175 7TM_GPCR_Srb: Serpent 41.2 18 0.00039 30.5 1.8 40 211-250 84-123 (236)
58 PF09889 DUF2116: Uncharacteri 37.1 52 0.0011 21.2 3.1 20 87-106 35-54 (59)
59 PF06681 DUF1182: Protein of u 30.7 96 0.0021 25.7 4.3 23 224-246 129-151 (226)
60 PF00375 SDF: Sodium:dicarboxy 30.0 4.4E+02 0.0095 24.2 13.0 107 43-165 137-246 (390)
61 PF02118 Srg: Srg family chemo 26.6 27 0.00059 30.0 0.7 54 216-270 85-138 (275)
62 PF02076 STE3: Pheromone A rec 26.3 2.5E+02 0.0054 24.6 6.5 28 88-116 195-222 (283)
63 COG3924 Predicted membrane pro 26.2 1.6E+02 0.0034 19.8 3.9 35 28-62 36-70 (80)
64 KOG3500|consensus 25.9 1.2E+02 0.0027 20.8 3.5 24 89-114 32-55 (84)
65 PF15086 UPF0542: Uncharacteri 23.8 35 0.00076 22.9 0.6 33 34-66 20-53 (74)
66 KOG4289|consensus 23.0 1.1E+03 0.024 26.4 11.7 64 87-162 2336-2399(2531)
67 PF10669 Phage_Gp23: Protein g 22.3 1E+02 0.0022 21.9 2.7 26 37-62 17-42 (121)
68 PF05391 Lsm_interact: Lsm int 21.7 44 0.00095 16.6 0.5 10 153-162 11-20 (21)
69 PHA01815 hypothetical protein 20.4 2.1E+02 0.0046 17.2 3.3 22 37-58 9-30 (55)
No 1
>KOG4219|consensus
Probab=99.86 E-value=2.2e-21 Score=168.87 Aligned_cols=131 Identities=19% Similarity=0.416 Sum_probs=109.0
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHH
Q psy14313 32 VPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQ 111 (317)
Q Consensus 32 ~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~ 111 (317)
..|...++++.+++|++++..+|..|.+++|..+.. .+.+.++.+..++++|+.||+++|++.|.+||+||++.
T Consensus 207 ~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~------gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y 280 (423)
T KOG4219|consen 207 QGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIP------GDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIY 280 (423)
T ss_pred cceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCc------cchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHH
Confidence 448889999999999999999999999999987742 11122445567788999999999999999999999999
Q ss_pred HHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCC
Q psy14313 112 RLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRG 169 (317)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~ 169 (317)
.++....++-. .......++....||+++|+|+||+||+++|+.||.+|++.++|+.
T Consensus 281 ~il~~~~~~i~-~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 281 FILNATNPEIN-RKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred HHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 98876554322 2344556888999999999999999999999999999999997763
No 2
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.85 E-value=1.4e-20 Score=172.16 Aligned_cols=116 Identities=18% Similarity=0.266 Sum_probs=92.3
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q psy14313 34 MYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRL 113 (317)
Q Consensus 34 ~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l 113 (317)
|.++.+++.|++|+++|++||.+|++.++++.+ ++++|+.+++++++++|++||+||+++.+
T Consensus 204 y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~------------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l 265 (409)
T PHA03235 204 FKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY------------------KKRSRTLTFVCILLLSFLCLQTPFVAIMI 265 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------hcchhhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 445566778999999999999999999987543 23457788999999999999999999988
Q ss_pred HHHHhcC----chhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCC
Q psy14313 114 IYLYARD----SQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCC 167 (317)
Q Consensus 114 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~ 167 (317)
+..+... ..........+..++.+++++||++||+||++++++||+++++.+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 266 FDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 7654321 11112233456788999999999999999999999999999988855
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.83 E-value=7.9e-20 Score=163.59 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Q psy14313 40 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYAR 119 (317)
Q Consensus 40 ~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~ 119 (317)
+++|++|+++|++||.+|.+++++.+ .++++|++|++++++++|++||+||++..+++.+..
T Consensus 203 ~~~f~iPl~im~~cY~~I~~~L~~~~------------------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~ 264 (338)
T PHA03234 203 FIWGIFPTMIFSFFYVIFCKALHALT------------------EKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFL 264 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------------------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34579999999999999999987531 134678999999999999999999999887655432
Q ss_pred C----chhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHh
Q psy14313 120 D----SQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTL 165 (317)
Q Consensus 120 ~----~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l 165 (317)
. +............++.+++++|||+||+||++.+++||+++++++
T Consensus 265 ~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~ 314 (338)
T PHA03234 265 YIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACF 314 (338)
T ss_pred hcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHH
Confidence 1 111112234456788999999999999999999999999988765
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.80 E-value=2.4e-19 Score=160.03 Aligned_cols=115 Identities=22% Similarity=0.448 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy14313 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLY 117 (317)
Q Consensus 38 ~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~ 117 (317)
.+++.|++|+++|+++|.+|++.++++++ ++++|.+|++++++++|++||+||++..++..+
T Consensus 193 ~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~ 254 (323)
T PHA02834 193 INIFGIVIPLIILIYCYSKILYTLKNCKN------------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSL 254 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC------------------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHH
Confidence 34778999999999999999999987532 124577899999999999999999999887665
Q ss_pred hcCch-----hhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCCC
Q psy14313 118 ARDSQ-----YFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGG 170 (317)
Q Consensus 118 ~~~~~-----~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~~ 170 (317)
.+... ...........++.+++++||++||+||+++|++||+++++++++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~ 312 (323)
T PHA02834 255 QSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNN 312 (323)
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhhh
Confidence 43210 000111123457889999999999999999999999999999876543
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=151.49 Aligned_cols=112 Identities=16% Similarity=0.381 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy14313 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLY 117 (317)
Q Consensus 38 ~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~ 117 (317)
..+++|++|+++|++||.+|++++++.++ ++++|.+|+++.++++|++||+||+++.++..+
T Consensus 277 ~~i~~f~lPl~vmi~cY~~I~~~L~~~~~------------------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~ 338 (417)
T PHA02638 277 INILGMFIPIIIFAFCYIKIILKLKQLKK------------------SKKTKSIIIVSIIIICSLICWIPLNIVILFATM 338 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677899999999999999999876432 235677899999999999999999999888766
Q ss_pred hcCc----------hhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCC
Q psy14313 118 ARDS----------QYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCR 168 (317)
Q Consensus 118 ~~~~----------~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~ 168 (317)
.... +... .......++..++++|||+||+||++.+++||+++++++++.
T Consensus 339 ~~~~~~~~~~~~~~c~~~-~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~ 398 (417)
T PHA02638 339 YSFKGFNSIISEHICGFI-KLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNI 398 (417)
T ss_pred HHhhccccccccccccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHh
Confidence 4211 1111 123455678899999999999999999999999999988544
No 6
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.68 E-value=4.5e-16 Score=139.89 Aligned_cols=115 Identities=17% Similarity=0.349 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy14313 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLY 117 (317)
Q Consensus 38 ~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~ 117 (317)
..++.+++|+++++++|.+|.+.++++++ .++++|+.|++.+++++|++||+|+++..++...
T Consensus 207 ~~~~~~~lP~~ii~~~y~~i~~~l~~~~~-----------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~ 269 (335)
T PHA03087 207 INIIGMLIPLTILLYCYSKILITLKGINK-----------------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSL 269 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999998876543 2345688999999999999999999998776644
Q ss_pred hcC----chhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCC
Q psy14313 118 ARD----SQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRG 169 (317)
Q Consensus 118 ~~~----~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~ 169 (317)
... ..........+..++.+++.+||++||+||++++++||+++++.++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~ 325 (335)
T PHA03087 270 HILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMF 325 (335)
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHh
Confidence 211 1111223344567888899999999999999999999999999985543
No 7
>KOG4220|consensus
Probab=99.61 E-value=3e-16 Score=136.91 Aligned_cols=84 Identities=25% Similarity=0.583 Sum_probs=76.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHH
Q psy14313 85 QSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQT 164 (317)
Q Consensus 85 ~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~ 164 (317)
.+++|++|++..|+++|++||+||.++.++..|-++ -++..++.+..||.|+||.+||++|++.|+.||+.|+++
T Consensus 410 ~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~-----CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~l 484 (503)
T KOG4220|consen 410 VRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN-----CIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRL 484 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc-----ccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHh
Confidence 778999999999999999999999999999988765 456669999999999999999999999999999999999
Q ss_pred hCCCCCCCC
Q psy14313 165 LCCRGGSHG 173 (317)
Q Consensus 165 l~~~~~~~~ 173 (317)
+.|+.+.++
T Consensus 485 L~Cr~~~~~ 493 (503)
T KOG4220|consen 485 LLCRWKKRR 493 (503)
T ss_pred heeeecccc
Confidence 988866543
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.49 E-value=1.5e-13 Score=117.62 Aligned_cols=123 Identities=25% Similarity=0.562 Sum_probs=97.9
Q ss_pred ceeeccccCC-CcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHH
Q psy14313 21 GFCGMLEVPR-GVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVT 99 (317)
Q Consensus 21 ~~C~~~~~~~-~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~ 99 (317)
..|....... ...++....++.+++|+++++++|.+|++.++++.++..... ....+++.++++|.+++++.+++
T Consensus 134 ~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~ 209 (257)
T PF00001_consen 134 SFCFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQS----SSSSRRRSRRERRAARTLLIIVL 209 (257)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHT----SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeeeeccccccccccccccccccc----ccccccccccccccccccccccc
Confidence 5788763322 246777888999999999999999999999999887433111 12334456778899999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHh
Q psy14313 100 TFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILY 150 (317)
Q Consensus 100 ~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY 150 (317)
+|++||+|+.+..++....+... . .......++.+++++||++||+||
T Consensus 210 ~f~~~~~P~~i~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 210 VFLLCWLPYFILSLLSVFSPSSS--L-ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTST--C-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCceeHHHHHHHHcCccc--h-hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 99999999999999888876642 1 466688999999999999999999
No 9
>KOG4219|consensus
Probab=99.22 E-value=5.2e-12 Score=110.74 Aligned_cols=94 Identities=23% Similarity=0.389 Sum_probs=83.1
Q ss_pred CCCCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeC
Q psy14313 206 RRPNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDF 285 (317)
Q Consensus 206 ~~~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 285 (317)
..+...|...++...+...+|+++|++||+|||.||.||++.+ ++++.+..+++++|++|++.++|+.+....+....
T Consensus 102 ~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~ 179 (423)
T KOG4219|consen 102 YFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYL 179 (423)
T ss_pred ccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeec
Confidence 3567799999999999999999999999999999999999844 89999999999999999999999999998775444
Q ss_pred CCCCceeeeeecCCCC
Q psy14313 286 PPGKYTTINYVDYPPP 301 (317)
Q Consensus 286 ~~~~~~~~C~~~~~~~ 301 (317)
.++.....|...||++
T Consensus 180 ~d~~~~~~~~~~~pe~ 195 (423)
T KOG4219|consen 180 YDGESRVVCVTAWPEH 195 (423)
T ss_pred cCCcceEEEEEecccc
Confidence 3456668899999986
No 10
>KOG2087|consensus
Probab=99.21 E-value=4.9e-13 Score=115.77 Aligned_cols=138 Identities=18% Similarity=0.282 Sum_probs=101.8
Q ss_pred eeccCCccccccceeecc--ccCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhh
Q psy14313 9 LFIGSGEILYESGFCGML--EVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS 86 (317)
Q Consensus 9 ~~~g~~~~~~~~~~C~~~--~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
|+.|-+.|... ..|.+. +++....||...++..-.+.+++|+++|++|+..+++...... ..
T Consensus 166 Pl~g~s~Y~~~-~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~---------------~~ 229 (363)
T KOG2087|consen 166 PLFGISSYGAS-SVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT---------------LI 229 (363)
T ss_pred cccCCCCCccc-ceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc---------------cc
Confidence 66675555444 799988 4444444888899999999999999999999999887654211 01
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhC
Q psy14313 87 RKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLC 166 (317)
Q Consensus 87 ~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~ 166 (317)
+.+.+|-...++++-++||.|.+.+.+...+...... ......+..++.-+|||+||++|++.++.||+.++.++.
T Consensus 230 ~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~----~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~ 305 (363)
T KOG2087|consen 230 STSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELIS----VSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLS 305 (363)
T ss_pred hhhhhhCeeEEEEccccccCchheeeeHHhcCCcccC----hhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHh
Confidence 1356677778899999999999888877666533211 111224455666789999999999999999999998874
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.07 E-value=2e-09 Score=96.13 Aligned_cols=119 Identities=14% Similarity=0.263 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Q psy14313 42 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDS 121 (317)
Q Consensus 42 ~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~ 121 (317)
.-++|.++..+..+.+.+.+|+.++++.+.. ++..+++.+++++++.+++.|+++-+|..+..+++.+...+
T Consensus 200 ~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~--------~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~ 271 (318)
T PF10324_consen 200 FKIIPCILLPILTILLIIELRKAKKRRKKLS--------SSKSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEED 271 (318)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHhhhccc--------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999999998887433211 11134566899999999999999999999999988865443
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCC
Q psy14313 122 QYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCR 168 (317)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~ 168 (317)
.........+..+...+..+|+..|++||.+++.+||++++++++|+
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 272 SGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 33344555677888899999999999999999999999999999874
No 12
>KOG4220|consensus
Probab=98.89 E-value=1.3e-09 Score=95.97 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=78.3
Q ss_pred CCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeee-eCC
Q psy14313 208 PNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV-DFP 286 (317)
Q Consensus 208 ~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ 286 (317)
+...|-.=-..+.....+|++.|..||+|||+.|.+||.|+..+|.+++..+|+++|++++++-.|-+++|+.-.. ...
T Consensus 99 G~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv 178 (503)
T KOG4220|consen 99 GPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTV 178 (503)
T ss_pred chHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeec
Confidence 4457888888899999999999999999999999999999999999999999999999999999999888874322 222
Q ss_pred CCCceeeeeecCCCCc
Q psy14313 287 PGKYTTINYVDYPPPL 302 (317)
Q Consensus 287 ~~~~~~~C~~~~~~~~ 302 (317)
+++ .|+.+|.++.
T Consensus 179 ~~~---eC~iQFlsnp 191 (503)
T KOG4220|consen 179 PDG---ECYIQFLSNP 191 (503)
T ss_pred CCC---ceEEEeecCc
Confidence 333 5999998754
No 13
>PHA03234 DNA packaging protein UL33; Provisional
Probab=98.89 E-value=1.6e-09 Score=97.21 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeCCC
Q psy14313 208 PNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDFPP 287 (317)
Q Consensus 208 ~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 287 (317)
++..|.........+.++|+++|++||+|||+||++|.++.. +.++....++++|+.+++.++|.++..... + .
T Consensus 101 G~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~--~--~ 174 (338)
T PHA03234 101 NQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTE--G--K 174 (338)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeee--e--c
Confidence 456899999999999999999999999999999999998642 334444556667999999999988765422 1 1
Q ss_pred CCceeeeeecCCC
Q psy14313 288 GKYTTINYVDYPP 300 (317)
Q Consensus 288 ~~~~~~C~~~~~~ 300 (317)
++....|..+|++
T Consensus 175 ~~~~~~C~~~~~~ 187 (338)
T PHA03234 175 KGNYGKCNIHISS 187 (338)
T ss_pred CCCCCcCcccCCc
Confidence 2222469988865
No 14
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.80 E-value=6.8e-09 Score=95.75 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=74.2
Q ss_pred CCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeC--
Q psy14313 208 PNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDF-- 285 (317)
Q Consensus 208 ~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-- 285 (317)
++..|...........+++++++++|++|||+||+||+++.+.++++.+..+++++|+++++.++|+++..+.....+
T Consensus 164 g~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~ 243 (417)
T PHA02638 164 GDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSA 243 (417)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhcccccccc
Confidence 345899999889999999999999999999999999999888788888888899999999999999998776432111
Q ss_pred ---CCCCceeeeeecCCC
Q psy14313 286 ---PPGKYTTINYVDYPP 300 (317)
Q Consensus 286 ---~~~~~~~~C~~~~~~ 300 (317)
+.+.....|...++.
T Consensus 244 ~~~~~~~~~~~C~~~~~~ 261 (417)
T PHA02638 244 QDSNETISNYQCTLIEDN 261 (417)
T ss_pred ccCCCCccCCeeeeeccc
Confidence 111123478776654
No 15
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.79 E-value=5e-09 Score=94.19 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=75.0
Q ss_pred CCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeCCC
Q psy14313 208 PNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDFPP 287 (317)
Q Consensus 208 ~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 287 (317)
++..|............++++++++||+|||+||++|++|+...+.+++..+++++|+.+++.++|++...... .
T Consensus 107 ~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~-----~ 181 (335)
T PHA03087 107 GEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK-----K 181 (335)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeee-----c
Confidence 34689999999999999999999999999999999999999999999999999999999999999887765532 1
Q ss_pred CCceeeeeecCCCC
Q psy14313 288 GKYTTINYVDYPPP 301 (317)
Q Consensus 288 ~~~~~~C~~~~~~~ 301 (317)
+.....|..+|.++
T Consensus 182 ~~~~~~C~~~~~~~ 195 (335)
T PHA03087 182 DHETLICCMFYNNK 195 (335)
T ss_pred cCCCceEEecCCCc
Confidence 22334688888743
No 16
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.79 E-value=8.5e-09 Score=94.77 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheee-eeeCCC
Q psy14313 209 NNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTIN-YVDFPP 287 (317)
Q Consensus 209 ~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~ 287 (317)
+..|.........+..+|+++|++||+|||+||++|+++.. .+++++..+++++|+.+++.++|+.++.... ..++.+
T Consensus 102 ~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~ 180 (409)
T PHA03235 102 VAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDP 180 (409)
T ss_pred CCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCc
Confidence 35899999999999999999999999999999999986543 5688899999999999999999977654321 111111
Q ss_pred -CCceeeeeecCCC
Q psy14313 288 -GKYTTINYVDYPP 300 (317)
Q Consensus 288 -~~~~~~C~~~~~~ 300 (317)
+.....|...|+.
T Consensus 181 ~~~~~~~C~~~~~~ 194 (409)
T PHA03235 181 EAPGYETCVIYFRA 194 (409)
T ss_pred CCCCcceeeEeCCc
Confidence 2234569776654
No 17
>PHA02834 chemokine receptor-like protein; Provisional
Probab=98.75 E-value=1.4e-08 Score=90.75 Aligned_cols=71 Identities=8% Similarity=0.148 Sum_probs=60.1
Q ss_pred CCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhhe
Q psy14313 208 PNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTT 279 (317)
Q Consensus 208 ~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 279 (317)
++..|.........+..+|++++++||+|||.||++|++++. .+.+++..+++++|+.+++.++|++++..
T Consensus 94 g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~ 164 (323)
T PHA02834 94 GEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYY 164 (323)
T ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344788888888888889999999999999999999998654 45577778888999999999999887654
No 18
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.75 E-value=7.3e-09 Score=88.41 Aligned_cols=89 Identities=27% Similarity=0.519 Sum_probs=76.0
Q ss_pred CcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeCCCCC
Q psy14313 210 NVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDFPPGK 289 (317)
Q Consensus 210 ~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (317)
..|.............+.++++++++|||++|++|++|++.++++++..+++++|+.+++.++|+.+.......+ .+
T Consensus 55 ~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~---~~ 131 (257)
T PF00001_consen 55 FLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVS---DG 131 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEES---TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cc
Confidence 588889999999999999999999999999999999999999999999999999999999999998876543221 11
Q ss_pred ceeeeeecCCCC
Q psy14313 290 YTTINYVDYPPP 301 (317)
Q Consensus 290 ~~~~C~~~~~~~ 301 (317)
....|..+++.+
T Consensus 132 ~~~~C~~~~~~~ 143 (257)
T PF00001_consen 132 SQSFCFIDFSSS 143 (257)
T ss_dssp CCEEEEESCSSS
T ss_pred cccccccccccc
Confidence 145799888764
No 19
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.52 E-value=2e-06 Score=75.97 Aligned_cols=121 Identities=13% Similarity=0.229 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy14313 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYL 116 (317)
Q Consensus 37 ~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~ 116 (317)
....+...+|+++++++...+...++||.++++.+. ...+..+.+++.|+.|+++..++.|.++++-..+..+...
T Consensus 183 ~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~----~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~ 258 (303)
T PF05296_consen 183 ILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNA----TGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFF 258 (303)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCC----CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344588999999999999999999999999766322 1222334667889999999887777776655443222221
Q ss_pred HhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCC
Q psy14313 117 YARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRG 169 (317)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~ 169 (317)
... ......+...+..+.|...|+|-.+.|+++|++++++++|.+
T Consensus 259 ~~~--------~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 259 FPE--------NSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred hcc--------ccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 211 112446777788999999999999999999999999998764
No 20
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.25 E-value=8.4e-06 Score=70.41 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=85.3
Q ss_pred cceeeccccCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHH
Q psy14313 20 SGFCGMLEVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVT 99 (317)
Q Consensus 20 ~~~C~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~ 99 (317)
...|.+........+... ....+++ .+++++.|......++++.++ ...+.+|..|.+.+.++
T Consensus 132 ~~~C~pp~a~~~~~~~~~-~~~~~~i-nv~tvivY~i~~~~~~~k~~~---------------~~~~~~kv~ksL~v~v~ 194 (257)
T PF10320_consen 132 IVICNPPLAFHGTASQIW-SYSNIII-NVITVIVYIITIIIFKRKSRS---------------NSSRSKKVFKSLKVTVI 194 (257)
T ss_pred cccCCCccccCccHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHccc---------------cchhHHHHHHHhhhhee
Confidence 468877622222222222 2222222 244456677777776665541 23456789999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHh
Q psy14313 100 TFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTL 165 (317)
Q Consensus 100 ~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l 165 (317)
.|+..|.=..+...+....+.+ ......+.....++..+|.+.|-++|.++|+|||+++++++
T Consensus 195 i~i~~w~~s~~~~~v~~~~~~~---~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 195 IFIFSWFLSQIINTVSLALGLD---GETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred eeeHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 9999998877776665544333 23344567777899999999999999999999999999864
No 21
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.07 E-value=9e-05 Score=64.94 Aligned_cols=116 Identities=13% Similarity=0.207 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy14313 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYA 118 (317)
Q Consensus 39 ~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~ 118 (317)
......+-.+..+++|+.++..+||+.+ ..+++.+++.++|.+.+.+..+.++++++...=+ +........
T Consensus 168 ~~~~~~~~cv~~iv~Y~~i~~~iRk~~k--------~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~ 238 (283)
T PF10323_consen 168 AFIFVSVTCVICIVCYGIIFIFIRKRNK--------KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQN 238 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 3344555567788899999999997754 1112234445667777777766666555544333 333222222
Q ss_pred cCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCC
Q psy14313 119 RDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCC 167 (317)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~ 167 (317)
.+. .....+..+-..+.-+.|.+||+.--+.|+++|+++++.++|
T Consensus 239 ~~~----~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 239 FNT----DPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred ccc----hHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 221 111122234555667789999999999999999999999877
No 22
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.86 E-value=9.4e-05 Score=65.38 Aligned_cols=116 Identities=14% Similarity=0.207 Sum_probs=79.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q psy14313 34 MYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRL 113 (317)
Q Consensus 34 ~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l 113 (317)
|....-.+.-++-.+.+.++|+.+...++++.+.. ...+..+++++..--..++.+...+.++=|..+..
T Consensus 195 Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~----------~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f 264 (313)
T PF10321_consen 195 YSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS----------TSSQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQF 264 (313)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 55555555556667888899999999998876521 12223344555555555555555555554433322
Q ss_pred HHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCCC
Q psy14313 114 IYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGG 170 (317)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~~ 170 (317)
. ..++++..++.+.--+++..+|+||..+|+..|++++++++.++.
T Consensus 265 ~-----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~ 310 (313)
T PF10321_consen 265 F-----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKI 310 (313)
T ss_pred e-----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHccccc
Confidence 1 224456777788888999999999999999999999999986554
No 23
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.54 E-value=0.0017 Score=57.16 Aligned_cols=69 Identities=19% Similarity=0.390 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCC
Q psy14313 94 LTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRG 169 (317)
Q Consensus 94 l~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~ 169 (317)
+..=.++|++||+|-.+-.+.+.++.. +..+..+-..++.+...+|.++|++-|+-.++.+...+++..
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~~-------~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~ 272 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGKN-------PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQF 272 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 446778999999999999888876532 123445555677888999999999999998888887765544
No 24
>KOG2087|consensus
Probab=97.54 E-value=0.00015 Score=63.66 Aligned_cols=83 Identities=20% Similarity=0.198 Sum_probs=68.9
Q ss_pred CCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeCCCC
Q psy14313 209 NNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDFPPG 288 (317)
Q Consensus 209 ~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 288 (317)
...|...++..-.+...|++.|+.+++||+++|.+|++-.+....+....+..+.|+.+++.++.|++... .|.
T Consensus 101 g~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s----~Y~-- 174 (363)
T KOG2087|consen 101 GLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGIS----SYG-- 174 (363)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCC----CCc--
Confidence 34899999999999999999999999999999999999777666666888999999999999998887744 332
Q ss_pred CceeeeeecC
Q psy14313 289 KYTTINYVDY 298 (317)
Q Consensus 289 ~~~~~C~~~~ 298 (317)
.. ..|.+-.
T Consensus 175 ~~-~vClPL~ 183 (363)
T KOG2087|consen 175 AS-SVCLPLH 183 (363)
T ss_pred cc-ceeeecc
Confidence 22 4687644
No 25
>KOG4193|consensus
Probab=97.02 E-value=0.019 Score=55.25 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=71.2
Q ss_pred ceeeccccCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHH
Q psy14313 21 GFCGMLEVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTT 100 (317)
Q Consensus 21 ~~C~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~ 100 (317)
..|+..++. ..++. |+.|+.+|+.+++.++...-.+-.+.. ....+..++..+.+..+..+.++.+
T Consensus 460 ~~CWl~~~~-~~~~~-------F~GPv~~ii~~Ni~~Fv~t~~~l~~~~------~~~~~~~~~~~~~~~~~~~l~L~~l 525 (610)
T KOG4193|consen 460 RVCWLDTQN-GFIWS-------FLGPVTLIILVNIVMFVVTLKKLLRRL------SKLQPIASKLENISLIRSALALLFL 525 (610)
T ss_pred CceEEecCC-ceEEE-------EehHHHHHHHHHHHHHHHHHHHHhhcc------cccCcchhhHHHHHHHHHHHHHHHH
Confidence 458886332 22222 777887777777655543332222111 0111111112222567777777777
Q ss_pred HHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCCCC
Q psy14313 101 FFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGS 171 (317)
Q Consensus 101 f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~~~ 171 (317)
+-+.|.=-.... . + .....+.++..++-.+..+.=-+.|++++++.|++.++.++|.+..
T Consensus 526 LGlTW~fgi~s~-~----~------~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~ 585 (610)
T KOG4193|consen 526 LGLTWIFGIFSW-L----P------GTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGD 585 (610)
T ss_pred HHHHHHHHHHHH-h----c------ccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCC
Confidence 778775422211 1 1 1233355555556666666778899999999999999999866543
No 26
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.81 E-value=0.00072 Score=58.97 Aligned_cols=54 Identities=20% Similarity=0.443 Sum_probs=46.4
Q ss_pred cchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHh
Q psy14313 223 NYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAV 276 (317)
Q Consensus 223 ~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 276 (317)
-..+.++-.+||++|+.||+.|.+|++..+.+.+..++++.|+.++....++..
T Consensus 78 y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 78 YFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred HHHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence 335677788999999999999999999999999999999999999866665443
No 27
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=96.80 E-value=0.00091 Score=57.76 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=45.4
Q ss_pred CcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHH
Q psy14313 210 NVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGF 268 (317)
Q Consensus 210 ~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~ 268 (317)
..|-...........++...+.+|++||++||+.|++|++..+++....+.....+.+.
T Consensus 59 ~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~ 117 (257)
T PF10320_consen 59 SECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSI 117 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHH
Confidence 36777777777777788888999999999999999999999888855544444444443
No 28
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=96.72 E-value=0.0091 Score=52.84 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy14313 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYL 116 (317)
Q Consensus 37 ~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~ 116 (317)
...+++.++-.++..+++..+++.+++.++++. ++.-++.+++.+.+++..++-.+|-+|..+..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS-----------~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~ 264 (303)
T PF10327_consen 196 ILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS-----------KQTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVI 264 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 344444566677788889999999888776433 234567788999999999999999999888776555
Q ss_pred HhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHH
Q psy14313 117 YARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQA 160 (317)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~ 160 (317)
....+. ..+...+.....++|.+|-++-.+.++.||+.
T Consensus 265 ~~~~~~------q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 265 FEFEDA------QVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred ecCCCc------HHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 443221 12456666777889999999999999999984
No 29
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.67 E-value=0.025 Score=49.31 Aligned_cols=107 Identities=7% Similarity=0.093 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Q psy14313 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQ 122 (317)
Q Consensus 43 ~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~~ 122 (317)
..+-.+++..+++.++.++++.+++. ...+.+.+++++++.+..+-....-..+++.+.=|....-+ .++
T Consensus 166 ~~~~~~~~~~lni~t~ikl~~~~~~~-----~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~~~-- 235 (274)
T PF10328_consen 166 NFILVIISNILNIITFIKLRKFRKKI-----SVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---SSN-- 235 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc--
Confidence 33345667778888888888877643 12223344556677788888888999999988877665332 111
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHH
Q psy14313 123 YFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQT 164 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~ 164 (317)
... .+..+...-.+.-++|++|+...|+|+|+..++.
T Consensus 236 ---~~~--~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~ 272 (274)
T PF10328_consen 236 ---RWW--QFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKK 272 (274)
T ss_pred ---cHH--HHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhc
Confidence 111 2233333345567789999999999999998874
No 30
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.48 E-value=0.043 Score=48.30 Aligned_cols=98 Identities=12% Similarity=0.175 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchhhhhHH
Q psy14313 49 VIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLN 128 (317)
Q Consensus 49 ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~ 128 (317)
++.++--+|.+.++++..+ -.++.++..++.+|.+.+.++.=+++..|-....++..+...+ .
T Consensus 195 ~~~~~R~ki~~~L~~~~~~-----------~S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~------~ 257 (292)
T PF10317_consen 195 VIFFLRRKILKFLNKKSSS-----------MSERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE------H 257 (292)
T ss_pred HHHHHHHHHHHHHHhhhhh-----------cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc------c
Confidence 3444445566666653321 1233455677899999999999999999877777776655432 2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHH
Q psy14313 129 EWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQ 163 (317)
Q Consensus 129 ~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~ 163 (317)
...-.+...++.+-+.+||+++...=+.||++++|
T Consensus 258 ~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 258 PFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 22345555667888999999999999999999874
No 31
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.42 E-value=0.0077 Score=51.81 Aligned_cols=130 Identities=11% Similarity=0.148 Sum_probs=85.8
Q ss_pred ceeeccccCC-CcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHH
Q psy14313 21 GFCGMLEVPR-GVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVT 99 (317)
Q Consensus 21 ~~C~~~~~~~-~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~ 99 (317)
.+|....... ...-+.++..+-=++.+.+|+.+.+.+...+.||+++.+.. .+.....+...|.|+++++++.+.
T Consensus 133 ~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhI----hs~~~s~r~SpE~RAtktILlLVs 208 (265)
T PF03402_consen 133 GYCSSVPISYIVSSLFATLLSFRDVLFVGLMIWASGYMVFLLYRHHQQVQHI----HSSSLSPRSSPETRATKTILLLVS 208 (265)
T ss_pred CeEEEEecchhhhhhhhhHHHhhHHHHHHHHHhhhhhheeeeeecccccccC----cCCCCCCCCChhHHHhCeEeeHHH
Confidence 5787652221 11122223333336667889999999999999988754422 222333445578899999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHH
Q psy14313 100 TFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAF 161 (317)
Q Consensus 100 ~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~ 161 (317)
.|+..+.--.++..+.....+.. .+..+..+++..-+.+-|++-...++++.+.+
T Consensus 209 ~FV~fY~l~si~~~~~~~~~~~~-------~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 209 TFVSFYGLSSILFIYLTSFKNSP-------WLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred HHHHHHhHHHHHHHHHHHhcCCc-------ceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 99999998777655433332211 12245567788889999999999999887654
No 32
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.27 E-value=0.017 Score=39.51 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=50.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHH
Q psy14313 84 SQSRKSIIRMLTAVVTTFFLCWA-PFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVK 156 (317)
Q Consensus 84 ~~~~~k~~~~l~~vv~~f~icw~-P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~ 156 (317)
+++-+|.++.+++=-++|+++|+ |+..-.+-....... .-...+..++..+..+|..+|-++|++.-+.
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~----~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGH----GPSFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 34556788899999999999999 987665544322111 2233477888889999999999999987654
No 33
>KOG4564|consensus
Probab=96.08 E-value=0.025 Score=52.34 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=72.1
Q ss_pred ccceeeccccCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHH
Q psy14313 19 ESGFCGMLEVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98 (317)
Q Consensus 19 ~~~~C~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv 98 (317)
+...|+..+.. ...++++-. -.++++++=.+..+.|.+.+-++-+. .+.....+.+|++|-.++.+
T Consensus 295 ~d~~CW~~~~~-~~~~WIi~g--Pi~~ai~vNf~flinIvrILv~KLr~-----------~~~~~~~~y~K~vKaTLvLI 360 (473)
T KOG4564|consen 295 EDTGCWDSNDT-GHIWWIIRG--PILLAILVNFIFLINIVRILVTKLRA-----------SNASETDQYRKLVKATLVLI 360 (473)
T ss_pred ccccccccCCC-cceEEEEec--cHHHHHHHHHHHHHHHHHHHHHHhcC-----------ccccchHHHHHHHHHHHHHH
Confidence 44567665433 223333221 12233344445556666666554442 11112233667777666666
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCCCCC
Q psy14313 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSH 172 (317)
Q Consensus 99 ~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~~~~ 172 (317)
=.|-+-.+.+ .+.+++. ........+...|..+...+=-+||+|.|.|.|.++|+.....+.++
T Consensus 361 PLfGI~~ilf-------~~~P~~~---~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~~ 424 (473)
T KOG4564|consen 361 PLFGIHYILF-------AFRPDED---TLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRLSR 424 (473)
T ss_pred HHcCCeeEEE-------EecCchH---HHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcChhh
Confidence 5555543221 2222221 22333445666777888888899999999999999999986655443
No 34
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=95.88 E-value=0.2 Score=44.26 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Q psy14313 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTF-FLCWAPFHAQRLIYL 116 (317)
Q Consensus 38 ~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f-~icw~P~~i~~l~~~ 116 (317)
...+..++....+++.-..+.+.++++.+. +..++..+..+|..+.+.+-+++. ++.-.|.........
T Consensus 189 ~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~----------~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~ 258 (302)
T PF10318_consen 189 IIIIFLLIIFIQIIFFAFLIIYYLLKSQKK----------TMSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISII 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh----------hhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 333333444444444445555555554431 112233445566777666666555 445558766655444
Q ss_pred HhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCC
Q psy14313 117 YARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCC 167 (317)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~ 167 (317)
.+..+ ..+..++..+...++.+.-++..+.++.+|+.++++++|
T Consensus 259 ~~~~~-------q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 259 FGYYN-------QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred ccccc-------cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 33222 124466677778899999999999999999999999987
No 35
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=95.83 E-value=0.076 Score=47.44 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy14313 90 IIRMLTAVVTTFFLCWAPFHAQRLIY 115 (317)
Q Consensus 90 ~~~~l~~vv~~f~icw~P~~i~~l~~ 115 (317)
+-+..+.|.++|.+||+|..+--.+.
T Consensus 242 IK~kFf~I~lVF~iCWlpNIINg~LL 267 (405)
T PF02101_consen 242 IKIKFFKIMLVFYICWLPNIINGSLL 267 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence 33445568889999999987765543
No 36
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.51 E-value=0.031 Score=43.66 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=62.8
Q ss_pred hhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeCCCCCceeeeeecCCCCccC
Q psy14313 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDFPPGKYTTINYVDYPPPLAG 304 (317)
Q Consensus 225 ~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 304 (317)
...+.-..|+++|-..|.+|+......|.++...-+.++.+..++.-+.|....-..-++...-.....|.+|-. +-..
T Consensus 57 ~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~Cap~rH-piT~ 135 (153)
T PF03383_consen 57 HPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSACAPDRH-PITL 135 (153)
T ss_pred HHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEccCCCCC-ceee
Confidence 345556789999999999999866679999998888887777777666655443332333334455567876521 2345
Q ss_pred ccccCeeeccCCC
Q psy14313 305 LQESGVVVKPLTS 317 (317)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (317)
.+.+-..++|+++
T Consensus 136 fqN~Y~i~iP~~~ 148 (153)
T PF03383_consen 136 FQNTYLIYIPVTC 148 (153)
T ss_pred eeeceeeeeehhh
Confidence 5666678888864
No 37
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=93.03 E-value=0.052 Score=48.11 Aligned_cols=111 Identities=16% Similarity=0.268 Sum_probs=73.3
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHH-HHHHHhhHHHHHHH
Q psy14313 34 MYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV-TTFFLCWAPFHAQR 112 (317)
Q Consensus 34 ~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv-~~f~icw~P~~i~~ 112 (317)
...........+.+.++++|-.++++.+++..+.. ..+.++-.++..+.+++-. +-+++...|..+..
T Consensus 196 ~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~-----------S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~ 264 (307)
T PF10326_consen 196 IGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM-----------SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVF 264 (307)
T ss_pred eeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc-----------ChhhHHHHHHHHHHHHHHhhhhheeeecchhhee
Confidence 44455666677889999999999999996544410 1222344456666666554 34677888987776
Q ss_pred HHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHH
Q psy14313 113 LIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFK 162 (317)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~ 162 (317)
+.-.++-+.+. ...+...+..+-|++||++--+.-++||++++
T Consensus 265 ~~p~~~i~~~~-------~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 265 ILPFFGIDLGF-------FSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred eeeccCCCCCc-------cccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 55444322111 22334455678899999999999999999874
No 38
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=92.51 E-value=0.027 Score=49.34 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=49.2
Q ss_pred hhhhhcchhhHHHHHHhhhheeeeeccc-ccccccchHHHHHHHHHHHHHHHHhHHHHHh
Q psy14313 218 HEGKTNYTSVLTIVAFSMERYLAICHPL-LSYAMSGLRRAIRIIAVLWLFGFLCATPFAV 276 (317)
Q Consensus 218 ~~~~s~~~s~~~l~~is~dRy~ai~~p~-~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 276 (317)
.........+...+.+|+.||.||++|. ++.+..++.+...++++-|+.+++.++|...
T Consensus 81 ~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~ 140 (283)
T PF10323_consen 81 IAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFF 140 (283)
T ss_pred HHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeec
Confidence 3345666777888999999999999999 7777888888888999999999999988443
No 39
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=91.36 E-value=11 Score=34.29 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHHHhCCCC
Q psy14313 129 EWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRG 169 (317)
Q Consensus 129 ~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~~l~~~~ 169 (317)
.....+......+|+.+=|.+-....++.|+++++.+...+
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~ 323 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR 323 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence 34556666777888888888888899999999999876533
No 40
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=90.89 E-value=0.24 Score=44.08 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=54.3
Q ss_pred HhhhhhhcchhhHHHHHHhhhheeeeecccccc--cccchHHHHHHHHHHHHHHHHhHHHHHhhheee
Q psy14313 216 DAHEGKTNYTSVLTIVAFSMERYLAICHPLLSY--AMSGLRRAIRIIAVLWLFGFLCATPFAVYTTIN 281 (317)
Q Consensus 216 ~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~--~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 281 (317)
..........|.+.-.+||+.|+++|.+|++.. +..+++.+..++.++.+.+++...+.....+..
T Consensus 82 ~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~ 149 (318)
T PF10324_consen 82 ESLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIV 149 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEE
Confidence 445567777899999999999999999998753 456788888899999999999999888766654
No 41
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=90.16 E-value=7.2 Score=33.67 Aligned_cols=102 Identities=11% Similarity=0.134 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy14313 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYA 118 (317)
Q Consensus 39 ~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~ 118 (317)
....+++-.++.++++....+++++.++ +.++.+++..+..++..+++++.-+.-.+..+ ....
T Consensus 173 ~~~~~i~~~ii~i~~~~~~~~~l~~~~~---------------~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~-~~~~ 236 (275)
T PF02118_consen 173 SLIYFIIIIIITIITNIITYRRLRKLSK---------------RIKSVERNLTIISFIISFVQLLIAIWQIINSF-AFFF 236 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 3444444455666677777777766543 12344556666555555555544333322111 1111
Q ss_pred cCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHH
Q psy14313 119 RDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQA 160 (317)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~ 160 (317)
...+ .......+.....=+-+...|++-.+.+++.|+.
T Consensus 237 ~~~~----~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 237 DFLP----ISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred cccc----HHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 1111 1122222222222333566799999999999985
No 42
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=88.35 E-value=7 Score=34.50 Aligned_cols=71 Identities=8% Similarity=0.159 Sum_probs=47.1
Q ss_pred hhhhhhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHH
Q psy14313 84 SQSRKSIIRMLTAVVTT-FFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQA 160 (317)
Q Consensus 84 ~~~~~k~~~~l~~vv~~-f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~ 160 (317)
++-.++..|.+.+-++. -++|+.|-.+.+..-.++. +...+...+...-.-.=|++||+.-.+.-|.||+.
T Consensus 238 ~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i------~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 238 KRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGI------DLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcC------ChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 34455666666665443 5778888777665444442 22344555555555667899999999999999985
No 43
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=88.17 E-value=8.3 Score=33.31 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=66.0
Q ss_pred CcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHH
Q psy14313 31 GVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHA 110 (317)
Q Consensus 31 ~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i 110 (317)
-...-+.-.++.+++|+++ ...|+.|..++-.+++.. ..+.+.+.+|--+. +|++.-.+-.+
T Consensus 184 P~~IqiiE~ilQ~~IPi~I-l~iYiAIIiKI~~MKkss--------------LnK~Ei~ILKQAif---IFvlFQ~ss~V 245 (305)
T PF04789_consen 184 PRGIQIIEIILQFGIPIFI-LVIYIAIIIKIIKMKKSS--------------LNKNEITILKQAIF---IFVLFQASSCV 245 (305)
T ss_pred CCchhHHHHHHHHhHHHHH-HHHHHHHHHHHHHHhhcc--------------CCchhHHHHHHHHH---HHHHHHHHHHH
Confidence 3445557789999999665 456888777666555421 13345555555544 44444445433
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHHH
Q psy14313 111 QRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQ 163 (317)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~~ 163 (317)
+.+-....-. ....-.+..+...+-.+..+..|....+.++|.||-+..
T Consensus 246 Fl~~qt~~~~----~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~ 294 (305)
T PF04789_consen 246 FLLCQTFKFN----VATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSS 294 (305)
T ss_pred HHhheeeeec----chHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHh
Confidence 3322222111 122222344555566777889999999999999987765
No 44
>PF13853 7tm_4: Olfactory receptor
Probab=87.91 E-value=0.0025 Score=49.88 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=61.2
Q ss_pred eeccCCccccccceeecc-------ccCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccccccccc
Q psy14313 9 LFIGSGEILYESGFCGML-------EVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGET 81 (317)
Q Consensus 9 ~~~g~~~~~~~~~~C~~~-------~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~ 81 (317)
.+.|. ...+...|... |...+..+......+..+.|+.+++++|++|..++.|...
T Consensus 27 ~l~~~--nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~avlki~S--------------- 89 (144)
T PF13853_consen 27 SLCFC--NIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAVLKIPS--------------- 89 (144)
T ss_pred eCCCC--CCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehhhcccc---------------
Confidence 34555 24455566522 4344555666667777889999999999999999988765
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q psy14313 82 KRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRL 113 (317)
Q Consensus 82 ~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l 113 (317)
.+.++|+..+...++.+..+.++|.....+
T Consensus 90 --~~~r~KAfsTC~sHL~vv~lfy~~~~~~y~ 119 (144)
T PF13853_consen 90 --AEGRSKAFSTCSSHLTVVSLFYGTVIFMYL 119 (144)
T ss_pred --cccccccccccccCceEEEEeeeeeEEEEe
Confidence 345668899999998888888888655443
No 45
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=82.72 E-value=1.3 Score=38.47 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=25.6
Q ss_pred hhhHHHHHHhhhheeeeecccccccccchHHHHHHH
Q psy14313 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRII 260 (317)
Q Consensus 225 ~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~ 260 (317)
........||+||-+|+..|..|++...+--...+.
T Consensus 94 iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~ 129 (273)
T PF10316_consen 94 IRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIII 129 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHH
Confidence 345556779999999999999887765544433333
No 46
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=74.83 E-value=6.9 Score=34.63 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=57.3
Q ss_pred CCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeeeCCCC
Q psy14313 209 NNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDFPPG 288 (317)
Q Consensus 209 ~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 288 (317)
+..|..+.........++.+.-++||++=|..+++..... .+.-......+|.+.++.++.++... .+++.
T Consensus 72 s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~~~----~k~e~~Y~l~~wGiPli~a~i~l~~~-----~~g~~ 142 (303)
T PF05462_consen 72 SFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYDEL----EKLEKYYHLVCWGIPLIPAVIPLIGN-----DYGPA 142 (303)
T ss_pred CcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCccH----HHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCCC
Confidence 5589999999999999999999999999999998764322 33334567788999998877665322 23333
Q ss_pred Cceeeeeec
Q psy14313 289 KYTTINYVD 297 (317)
Q Consensus 289 ~~~~~C~~~ 297 (317)
+ .-|+.+
T Consensus 143 G--~WCWI~ 149 (303)
T PF05462_consen 143 G--NWCWIK 149 (303)
T ss_pred C--Cceeec
Confidence 3 368775
No 47
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=73.32 E-value=5.5 Score=32.93 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=35.4
Q ss_pred CCCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecc
Q psy14313 207 RPNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHP 244 (317)
Q Consensus 207 ~~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p 244 (317)
.+++.|..++........++-+...+||+.-|+.|.+|
T Consensus 69 ~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 69 APSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45679999999999999999999999999999999999
No 48
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=71.70 E-value=13 Score=33.05 Aligned_cols=53 Identities=8% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHH
Q psy14313 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTF 101 (317)
Q Consensus 43 ~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f 101 (317)
..+-.+.+++.++.+++++|+.+.+ ..+.++.++.+++|+..+.+.+++++-+
T Consensus 204 s~~~~~~iii~N~lm~~Klr~~k~~------l~~~~~s~~~~KAE~SLT~Tmi~mliP~ 256 (307)
T PF10322_consen 204 SIFWMISIIILNILMFFKLRKLKSS------LSSQRRSKQSRKAERSLTLTMISMLIPY 256 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc------ccchhhcccchhhheeHHHHHHHHHHHH
Confidence 3444577778899999999987621 1111222333455555555555554444
No 49
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=59.34 E-value=1.2e+02 Score=27.24 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=31.1
Q ss_pred CCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccc
Q psy14313 208 PNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSY 248 (317)
Q Consensus 208 ~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~ 248 (317)
+...|.........+.....+..+++.+||-+|...|-.++
T Consensus 97 ~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 97 TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 34467766666666667778889999999999998886553
No 50
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=57.59 E-value=21 Score=29.50 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCccccccceeeccccCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14313 13 SGEILYESGFCGMLEVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSR 66 (317)
Q Consensus 13 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~~~~ 66 (317)
-+.|.+.+..|...+.+.. +-+.+.-+--++-.+++++.|+.|+..+|++.+
T Consensus 148 ~~~Y~~~g~WCWi~~~~~~--~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 148 GPGYGPAGAWCWIPSRYEW--YRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred cCcccccCcEEEECCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3456666789998744322 222333333444567788899999999998766
No 51
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=51.31 E-value=62 Score=22.37 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=20.5
Q ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14313 30 RGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIRS 63 (317)
Q Consensus 30 ~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~~ 63 (317)
.+.....++.+++.+.|+.++.+.|..=.+..++
T Consensus 16 ~~yl~~sI~s~l~Cc~PlGi~Ai~~s~kv~~~~~ 49 (82)
T PF04505_consen 16 PDYLVLSIFSTLCCCWPLGIVAIVYSSKVRSRYA 49 (82)
T ss_pred CCceeHHHHHHHHHHhhHHHHHheechhhHHHHH
Confidence 3444444455555567988888887765554443
No 52
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=50.89 E-value=23 Score=31.75 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=73.1
Q ss_pred CCCCCCcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHhHHHHHhhheeeeee
Q psy14313 205 SRRPNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVD 284 (317)
Q Consensus 205 ~~~~~~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 284 (317)
+...+..|...-....-...++...-+.+++.-|++...--....+ .+.....-.++|.+.++.++..+....++
T Consensus 87 ~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i--~~~s~yfH~~aW~iP~~~ti~vL~~~~Vd--- 161 (328)
T PF01534_consen 87 DGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAI--EKKSSYFHLVAWGIPAVLTIAVLALRKVD--- 161 (328)
T ss_pred cCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchh--hhhcchhhhHHhhhhHHHHHHHHHhcccc---
Confidence 3456779999999999998988888888999999886654432222 34455567789999999998877776654
Q ss_pred CCCCCceeeeeecCCCCccCccccCeeeccCC
Q psy14313 285 FPPGKYTTINYVDYPPPLAGLQESGVVVKPLT 316 (317)
Q Consensus 285 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~ 316 (317)
.++....|+.--.+ .....++|++|+.
T Consensus 162 --gD~ltGiC~Vg~~~---~~~l~~fvl~Pl~ 188 (328)
T PF01534_consen 162 --GDELTGICFVGNQN---PSALRGFVLAPLF 188 (328)
T ss_pred --cccccceeEEeCCC---HHHHhHHHHHHHH
Confidence 34444579876544 3346788998873
No 53
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=49.82 E-value=28 Score=31.05 Aligned_cols=59 Identities=15% Similarity=0.024 Sum_probs=43.0
Q ss_pred CcCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHH
Q psy14313 210 NVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFL 269 (317)
Q Consensus 210 ~~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~ 269 (317)
..|..-.............+..++.+||++|.++.-+|.+. ++.....++.+-|+.++.
T Consensus 94 ~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~ 152 (324)
T PF10292_consen 94 YRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLL 152 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHH
Confidence 35766677777888888899999999999999999988754 334434455555555544
No 54
>KOG2575|consensus
Probab=49.67 E-value=19 Score=32.90 Aligned_cols=27 Identities=41% Similarity=0.645 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHH
Q psy14313 86 SRKSIIRMLTAVVTTFFLCWAPFHAQR 112 (317)
Q Consensus 86 ~~~k~~~~l~~vv~~f~icw~P~~i~~ 112 (317)
.-.+..+.-..++++|.++|.|+....
T Consensus 253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 253 SFARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345788999999999999999986543
No 55
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=45.54 E-value=6.9 Score=33.05 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHH
Q psy14313 89 SIIRMLTAVVTTFFLCWAPFH 109 (317)
Q Consensus 89 k~~~~l~~vv~~f~icw~P~~ 109 (317)
+..+....+...+.+.|+...
T Consensus 195 ~~~~~~~~L~~llg~~w~~~~ 215 (242)
T PF00002_consen 195 KILRASLILLPLLGITWLFGI 215 (242)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHheeee
Confidence 367777778888888888743
No 56
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=43.19 E-value=2.4e+02 Score=25.07 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=49.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHH
Q psy14313 83 RSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFK 162 (317)
Q Consensus 83 ~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~ 162 (317)
+...+.|+.+++...+.+..+.-+-+.+..+.......... ......+.. ........+.+=|++.....++.|++.+
T Consensus 224 Ql~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~y~al~e-~~~~~P~Y~ii~~~~~~~~~k~~r~~~~ 301 (324)
T PF10292_consen 224 QLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMS-KPNYFALAE-LNHIFPLYSIISPLILYRKIKKIRKKRK 301 (324)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888777777776666666555544443322111 111111222 2234566888999999999999999887
Q ss_pred HHhC
Q psy14313 163 QTLC 166 (317)
Q Consensus 163 ~~l~ 166 (317)
+-+.
T Consensus 302 ~~l~ 305 (324)
T PF10292_consen 302 KRLE 305 (324)
T ss_pred HHHH
Confidence 7654
No 57
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=41.22 E-value=18 Score=30.51 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=31.0
Q ss_pred cCchhHhhhhhhcchhhHHHHHHhhhheeeeecccccccc
Q psy14313 211 VSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAM 250 (317)
Q Consensus 211 ~c~~~~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~ 250 (317)
.+..-.......+..+++.-..+++||++|.-..-+|.+.
T Consensus 84 ~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 84 LFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 4444455556677788888999999999999998888754
No 58
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=37.12 E-value=52 Score=21.22 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHhhH
Q psy14313 87 RKSIIRMLTAVVTTFFLCWA 106 (317)
Q Consensus 87 ~~k~~~~l~~vv~~f~icw~ 106 (317)
.+|...+++.++++|++-|+
T Consensus 35 ~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 35 MRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666665553
No 59
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=30.72 E-value=96 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=17.0
Q ss_pred chhhHHHHHHhhhheeeeecccc
Q psy14313 224 YTSVLTIVAFSMERYLAICHPLL 246 (317)
Q Consensus 224 ~~s~~~l~~is~dRy~ai~~p~~ 246 (317)
.+.....+++|+|||.-|+.-.|
T Consensus 129 s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 129 SCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred hhhccchhhhhhhhhheeeeccc
Confidence 44444556799999999987665
No 60
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=30.04 E-value=4.4e+02 Score=24.18 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCccccccccccchhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Q psy14313 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQ 122 (317)
Q Consensus 43 ~~~P~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~~ 122 (317)
..+++++..+..+.....+.+..+ .-.+--+.....+.-++-++++..|+.++.+........+
T Consensus 137 ~~L~ivvfai~~G~al~~~~~~~~----------------~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~ 200 (390)
T PF00375_consen 137 NILGIVVFAILFGVALGRLGEKGK----------------PLIDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIATQG 200 (390)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSH----------------HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSSC
T ss_pred ccchhhhHHHHHHHHHHHHhhhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666666666665555543322 1222234555666777889999999999988766554433
Q ss_pred hhhhHHHHHHHHHHHHH--HhhhhhhHHHhh-hcCHHHHHHHHHHh
Q psy14313 123 YFASLNEWLFMIAGGFY--YVSSTVNPILYN-VMSVKYRQAFKQTL 165 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~l~--~~ns~~NP~IY~-~~~~~fR~~~~~~l 165 (317)
...-.....+.+...++ ..--.+.|+++. +..++..+.++++.
T Consensus 201 ~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~ 246 (390)
T PF00375_consen 201 LSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAML 246 (390)
T ss_dssp CGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHH
Confidence 22222222222222222 223567999988 44557777777664
No 61
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=26.62 E-value=27 Score=29.99 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=36.6
Q ss_pred HhhhhhhcchhhHHHHHHhhhheeeeecccccccccchHHHHHHHHHHHHHHHHh
Q psy14313 216 DAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLC 270 (317)
Q Consensus 216 ~~~~~~s~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~ 270 (317)
.....-..++....-+.|+++|+-+|..|.++.+.=+ +....+++++.++.+..
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~-~~~~~~i~~i~~~p~~~ 138 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWK-RYYWIIIIIIFLLPFSF 138 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH-hhhhhheeeeeehhHHH
Confidence 4445556677788888999999999999999876544 33333444555555433
No 62
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=26.34 E-value=2.5e+02 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.327 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy14313 88 KSIIRMLTAVVTTFFLCWAPFHAQRLIYL 116 (317)
Q Consensus 88 ~k~~~~l~~vv~~f~icw~P~~i~~l~~~ 116 (317)
.|..| ++.+.++.+++.+|..+..++..
T Consensus 195 ~Rf~R-L~~la~~~i~~~~P~~i~~~v~n 222 (283)
T PF02076_consen 195 SRFFR-LLALALVIILIYLPLSIYYLVSN 222 (283)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 66688888999999999988843
No 63
>COG3924 Predicted membrane protein [Function unknown]
Probab=26.22 E-value=1.6e+02 Score=19.83 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=25.4
Q ss_pred cCCCcceehhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14313 28 VPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLRIR 62 (317)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~~~ 62 (317)
.+....+-..+-..++.+|++.|+.|+..|-..-+
T Consensus 36 t~G~~gfP~WFE~aCi~lPllFi~l~~~mvkfif~ 70 (80)
T COG3924 36 TPGFTGFPLWFEMACILLPLLFIVLCWAMVKFIFR 70 (80)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344455567788899999999999988765544
No 64
>KOG3500|consensus
Probab=25.94 E-value=1.2e+02 Score=20.83 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy14313 89 SIIRMLTAVVTTFFLCWAPFHAQRLI 114 (317)
Q Consensus 89 k~~~~l~~vv~~f~icw~P~~i~~l~ 114 (317)
...+.++++.. +.||+=..+.++.
T Consensus 32 ~li~~~lvlTA--VCCwlfWli~yla 55 (84)
T KOG3500|consen 32 GLIRCMLVLTA--VCCWLFWLIVYLA 55 (84)
T ss_pred ChhHHHHHHHH--HHHHHHHHHHHHH
Confidence 35555554444 8899876665543
No 65
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.79 E-value=35 Score=22.85 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=21.7
Q ss_pred eehhhHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Q psy14313 34 MYELSFLFFFFIPMLVI-MLMYTRIGLRIRSRSR 66 (317)
Q Consensus 34 ~~~~~~~~~~~~P~~ii-~~~Y~~I~~~~~~~~~ 66 (317)
|-++..++..+.|++++ .++..++...+.++.+
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~er 53 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEER 53 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777778886555 4566667777766554
No 66
>KOG4289|consensus
Probab=22.98 E-value=1.1e+03 Score=26.41 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHhhhhhhHHHhhhcCHHHHHHHH
Q psy14313 87 RKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFK 162 (317)
Q Consensus 87 ~~k~~~~l~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~IY~~~~~~fR~~~~ 162 (317)
..++.+..+++++..-..|+-..+ ... ...-.++++...+.++...+--++|+..|.+.|++.+
T Consensus 2336 ~v~~lq~~fl~llllsatwl~~ll-------~vn-----~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2336 NVSVLQHSFLLLLLLSATWLLGLL-------AVN-----PDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHH-------hcC-----CchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 335666666666666666653221 111 1122255555556666666667789999999999988
No 67
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=22.28 E-value=1e+02 Score=21.91 Aligned_cols=26 Identities=19% Similarity=0.529 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14313 37 LSFLFFFFIPMLVIMLMYTRIGLRIR 62 (317)
Q Consensus 37 ~~~~~~~~~P~~ii~~~Y~~I~~~~~ 62 (317)
.+|.+.+++-++|+++.-.+|+..-+
T Consensus 17 ~~FA~L~i~~FiILLIi~~~IW~~~r 42 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITKSIWHDSR 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34555555556666666666665433
No 68
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=21.68 E-value=44 Score=16.57 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=6.7
Q ss_pred cCHHHHHHHH
Q psy14313 153 MSVKYRQAFK 162 (317)
Q Consensus 153 ~~~~fR~~~~ 162 (317)
.|.+||+-|.
T Consensus 11 SNddFrkmfl 20 (21)
T PF05391_consen 11 SNDDFRKMFL 20 (21)
T ss_pred chHHHHHHHc
Confidence 4677887664
No 69
>PHA01815 hypothetical protein
Probab=20.44 E-value=2.1e+02 Score=17.17 Aligned_cols=22 Identities=27% Similarity=0.732 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy14313 37 LSFLFFFFIPMLVIMLMYTRIG 58 (317)
Q Consensus 37 ~~~~~~~~~P~~ii~~~Y~~I~ 58 (317)
.++.+.|++.+++..-.|+++.
T Consensus 9 ivfllaflitliilmt~~irvs 30 (55)
T PHA01815 9 IVFLLAFLITLIILMTLHIRVS 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655555543
Done!