RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14313
(317 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 77.0 bits (190), Expect = 2e-16
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
LS L F +P+LVI++ YT I +R R+R + + S + +ML
Sbjct: 146 LSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARA------KRSSSKERKAAKMLLV 199
Query: 97 VVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILY 150
VV F LCW P+H ++ L + L +I YV+S +NPI+Y
Sbjct: 200 VVVVFVLCWLPYHI--VLLLDSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251
Score = 63.9 bits (156), Expect = 7e-12
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
Y S+L + A S++RYLAI HPL + RRA +I V+W+ L + P +++ +
Sbjct: 63 YASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR-- 120
Query: 284 DFPPGKYTTINYVDYP 299
T +D+P
Sbjct: 121 -TVEEGNVTTCLIDFP 135
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 38.6 bits (90), Expect = 0.003
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 229 TIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTT-INYVDFPP 287
T+ + +RY I H S R +I+ + W +C+ P VYTT + + D P
Sbjct: 122 TVALIAADRYRVI-HQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDP 180
Query: 288 G 288
Sbjct: 181 E 181
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 37.5 bits (87), Expect = 0.007
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP-FAVYTT 279
Y S+ I S++RY+AI HP+ S ++ ++ + V+W+ + TP VYTT
Sbjct: 123 YNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTT 179
Score = 27.8 bits (62), Expect = 7.1
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 82 KRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNE------WLFMIA 135
+S+ K I+++ +V F + W PF+ +++Y+ +F S + + +
Sbjct: 234 NKSKKNKKAIKLVLIIVILFVIFWLPFNVS--VFVYSLHILHFKSGCKAVKYIQYALHVT 291
Query: 136 GGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGS 174
+NP++Y +S + + K++L S G
Sbjct: 292 EIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTSSGK 330
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 30.6 bits (69), Expect = 0.87
Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 23/132 (17%)
Query: 40 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVT 99
+F IP+++++ Y++I +++ +++++ I+++ VVT
Sbjct: 195 IFGIVIPLIILIYCYSKILYTLKN------------------CKNKNKTRSIKIILTVVT 236
Query: 100 TFFLCWAPFHAQRLI-YLYARD----SQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMS 154
+ W PF+ I L + Y + IA +V VNPI+Y +
Sbjct: 237 FTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVG 296
Query: 155 VKYRQAFKQTLC 166
+++ FK C
Sbjct: 297 KNFKKVFKNMFC 308
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 30.3 bits (69), Expect = 1.1
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 229 TIVAFSMERYLAICHPLLSYAMSGLRRAIR-IIAVLWLFGFLCATPFAVYTTINY 282
I S RYLAIC P+ + II + WL G L + T I Y
Sbjct: 92 GISFLSTNRYLAICFPISRLTKIWQSARLWKIILIYWLPGLLISLVVLKNTDIYY 146
>gnl|CDD|224005 COG1079, COG1079, Uncharacterized ABC-type transport system,
permease component [General function prediction only].
Length = 304
Score = 30.2 bits (69), Expect = 1.3
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 6 TRILFIGSGEILYESGFCGMLEVPRGVPM-YELSFLFFFFIPMLVI---MLMYTRIGLRI 61
+ +F G G+ ++P P + S L + I ++ + +L TR GLR+
Sbjct: 110 GQSIFGQPGTTFQPIDIPGLSDIPVIGPALFGQSPLVYLAILLVALVWYVLYRTRFGLRL 169
Query: 62 RS 63
R+
Sbjct: 170 RA 171
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 30.0 bits (67), Expect = 1.8
Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 27/124 (21%)
Query: 44 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFL 103
FIP+++ Y +I L+++ + K+S+ KSI +++ ++ +
Sbjct: 283 FIPIIIFAFCYIKIILKLK-----------------QLKKSKKTKSI-IIVSIIIICSLI 324
Query: 104 CWAPFHAQRLIYLYARDSQYFASLNE---------WLFMIAGGFYYVSSTVNPILYNVMS 154
CW P + L + + ++E + M+A +NP++Y ++
Sbjct: 325 CWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIG 384
Query: 155 VKYR 158
+R
Sbjct: 385 ENFR 388
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 28.7 bits (64), Expect = 5.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 250 MSGLRRAIRIIAVL 263
MSGLR A+RII +L
Sbjct: 1173 MSGLREAVRIIDIL 1186
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 28.0 bits (63), Expect = 6.6
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 187 VDVASPQWSRAMTWKRQPSRRP--NNVSASADAHEGKT 222
+ V S WS + RQ R V SADA EG T
Sbjct: 207 IVVESGDWSEDEMFARQ---RELIAPVFTSADAKEGAT 241
>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 28.1 bits (63), Expect = 7.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 90 IIRMLTAVVTTFFLCWAPF 108
I+++ VV TF + + PF
Sbjct: 217 ILKLALVVVGTFAIIFLPF 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.138 0.431
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,340,030
Number of extensions: 1558538
Number of successful extensions: 2355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2343
Number of HSP's successfully gapped: 44
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.3 bits)