RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14313
(317 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 110 bits (277), Expect = 5e-28
Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 8/155 (5%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
+ +F+P+LVI YT +G+ + + + ++ +++ +++M+
Sbjct: 199 CVTVLIYFLPLLVIGYAYTVVGITLWASEIPG------DSSDRYHEQVSAKRKVVKMMIV 252
Query: 97 VVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVK 156
VV TF +CW PFH L+ D + +++ S+ NPI+Y ++ +
Sbjct: 253 VVCTFAICWLPFHIFFLLPYINPDLYL-KKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDR 311
Query: 157 YRQAFKQTLCCRGGSHGSFARDQSSFRETMVDVAS 191
+R FK C + + T
Sbjct: 312 FRLGFKHAFRCCPFISAG-DYEGLEMKSTRYLQTQ 345
Score = 62.0 bits (151), Expect = 5e-11
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
+ S+ ++ A + +RY+AI HPL +I V+W+ L A P Y+T +
Sbjct: 117 FASIYSMTAVAFDRYMAIIHPLQP--RLSATATKVVICVIWVLALLLAFPQGYYSTTETM 174
Query: 284 D 284
Sbjct: 175 P 175
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 100 bits (250), Expect = 6e-24
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
FLF F +P+LVI + Y+ + R+R S G ++ ++ + I R++
Sbjct: 292 CIFLFSFIVPVLVISVCYSLMIRRLRGVRLLS----------GSREKDRNLRRITRLVLV 341
Query: 97 VVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVK 156
VV F CW P L Q + + YV+S +NPILY +
Sbjct: 342 VVAVFVGCWTPVQVFVLAQGL--GVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDEN 399
Query: 157 YRQAFKQTLCCRGGSH 172
++ F++ C
Sbjct: 400 FKACFRKFCCASALGR 415
Score = 64.1 bits (156), Expect = 1e-11
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
+TS T+ A S++RY+AICHP+ + + +A + +W + P A+ +
Sbjct: 209 FTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVE 268
Query: 284 DFPPGKYTTINYVDYPPP 301
D V+ P P
Sbjct: 269 D-----EEIECLVEIPTP 281
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 85.4 bits (211), Expect = 9e-19
Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 8/188 (4%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSR--HSLGKRVEGTVHGETKRSQSR-KSIIRMLT 95
F+ FF P+L+I Y I + + + + ++ KR+ + + + + ++
Sbjct: 205 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISI 264
Query: 96 AVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSV 155
+V+ F L W+P+ L+ + + M A S+ NP++Y+V
Sbjct: 265 VIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFA----KASAIHNPMIYSVSHP 320
Query: 156 KYRQAFKQTLCCRGGSHGSFARDQSSFRETMVDVASPQWSR-AMTWKRQPSRRPNNVSAS 214
K+R+A QT ++ ++ ++ + + S A + + +
Sbjct: 321 KFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQK 380
Query: 215 ADAHEGKT 222
+
Sbjct: 381 MQQQQAAY 388
Score = 46.8 bits (111), Expect = 4e-06
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 225 TSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVD 284
S++T+ S++RY I P+ + RRA +I +WL+ L A Y
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWG-AYT- 178
Query: 285 FPPGKYTTINYVDYPPP 301
G + DY
Sbjct: 179 -LEGVLCNCS-FDYISR 193
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 82.5 bits (204), Expect = 3e-18
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
S + F+IP+L+++ + R+ + + R T R ++ L
Sbjct: 180 ASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMR---EHKALKTLGI 236
Query: 97 VVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVK 156
++ F LCW PF ++ ++ RD + +WLF+ Y +S +NPI+Y S
Sbjct: 237 IMGVFTLCWLPFFLVNIVNVFNRD-----LVPDWLFVAFNWLGYANSAMNPIIY-CRSPD 290
Query: 157 YRQAFKQTLCCR 168
+R+AFK+ L
Sbjct: 291 FRKAFKRLLAFP 302
Score = 44.3 bits (105), Expect = 2e-05
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPF 274
S+ T+ +++RYLAI P ++ RA II +W L +
Sbjct: 96 TASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP 146
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 82.0 bits (203), Expect = 7e-18
Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 39 FLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVV 98
F+ F IP++VI Y ++ ++ ++ K + RM+ +V
Sbjct: 209 FVVHFIIPLIVIFFCYGQLVFTVKE---------AAAQQQESATTQKAEKEVTRMVIIMV 259
Query: 99 TTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYR 158
F +CW P+ + S I F S+ NP++Y +M+ ++R
Sbjct: 260 IAFLICWLPYAGVAFYIFTHQGSD----FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 315
Query: 159 QAFKQTLCCRGGSHGSFARDQSSFRETMVDVAS 191
TLCC G + + VA
Sbjct: 316 NCMVTTLCCGKNPLGDDEASTTVSKTETSQVAP 348
Score = 55.9 bits (135), Expect = 4e-09
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
++ ++V ++ERY+ +C P+ ++ AI +A W+ CA P V +
Sbjct: 123 EIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALACAAPPLVG----WS 177
Query: 284 DFPPGKYTTINYVDYP 299
+ P +DY
Sbjct: 178 RYIPEGMQCSCGIDYY 193
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 78.4 bits (193), Expect = 2e-16
Identities = 30/161 (18%), Positives = 69/161 (42%), Gaps = 22/161 (13%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRV----------------EGTVHGE 80
S + F++P+++++ +Y+R+ + + + +
Sbjct: 351 ASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRS 410
Query: 81 TKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYY 140
+K ++ L ++ TF LCW PF ++++ + + + ++++ Y
Sbjct: 411 SKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGY 465
Query: 141 VSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGSFARDQSS 181
V+S NP++Y S +R AF++ LC R S ++ SS
Sbjct: 466 VNSGFNPLIY-CRSPDFRIAFQELLCLRRSSLKAYGNGYSS 505
Score = 46.8 bits (111), Expect = 5e-06
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPF 274
S+ T+ +++RY AI P ++ +A II ++W+ L +
Sbjct: 267 TASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 317
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 73.6 bits (180), Expect = 9e-15
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 3/132 (2%)
Query: 54 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRL 113
+R + +R++ + GT Q + L +V F LCW P H
Sbjct: 357 KSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINC 416
Query: 114 IYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHG 173
+ D + WL +A + +S VNP +Y ++RQ F++ +
Sbjct: 417 FTFFCPD---CSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 473
Query: 174 SFARDQSSFRET 185
+
Sbjct: 474 EPFKAHHHHHHH 485
Score = 44.0 bits (103), Expect = 4e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
+S+ +++A +++RY+AI PL + RA IIA+ W+ F
Sbjct: 104 QSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 153
Score = 40.9 bits (95), Expect = 3e-04
Identities = 33/246 (13%), Positives = 68/246 (27%), Gaps = 21/246 (8%)
Query: 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAV 97
+F +P+L+++ +Y RI L R + E E R + K T
Sbjct: 196 NFFACVLVPLLLMLGVYLRIFLAARRQLN-----IFEMLRIDEGLRLKIYKDTEGYYTIG 250
Query: 98 VTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKY 157
+ +A + A + + N + +
Sbjct: 251 IGHLLTKSPSLNAAKSELDKAIGRNTNGVITK---------DEAEKLFNQDVDAAVRGIL 301
Query: 158 RQAFKQTLCCRGGSHGSFARDQSSFRETMVDVASPQWSRAMTWKRQPSRRPNNVSASADA 217
R A + + + A F+ VA S M +++ N++ S
Sbjct: 302 RNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY 361
Query: 218 HEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVY 277
++ V+T + A + +A++ LC P +
Sbjct: 362 NQTPNRAKRVITTFRTGTWDAYRS-------TLQKEVHAAKSLAIIVGLFALCWLPLHII 414
Query: 278 TTINYV 283
+
Sbjct: 415 NCFTFF 420
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 71.6 bits (175), Expect = 4e-14
Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 8/124 (6%)
Query: 54 YTRIGLRIRSRSRHSLGKRV-----EGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPF 108
+ + KRV GT K R+ I RM+ VV F +CW P
Sbjct: 341 AVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRR-ITRMVLVVVAVFIVCWTPI 399
Query: 109 HAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCR 168
H +I + + + Y +S +NP+LY + +++ F++
Sbjct: 400 HIYVIIKALITIPET--TFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPT 457
Query: 169 GGSH 172
+
Sbjct: 458 SSTI 461
Score = 59.2 bits (143), Expect = 4e-10
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
+TS+ T+ S++RY+A+CHP+ + R A + W+ P T Y
Sbjct: 101 FTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYR 160
Query: 284 D 284
Sbjct: 161 Q 161
Score = 57.7 bits (139), Expect = 1e-09
Identities = 33/265 (12%), Positives = 82/265 (30%), Gaps = 33/265 (12%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
F+F F +P+L+I + Y + LR++S ++R+
Sbjct: 184 CVFIFAFIMPVLIITVCYGLMILRLKSVRNIF--------------------EMLRIDEG 223
Query: 97 VVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVK 156
+ + ++ + +L + A+ +E + N ++ + K
Sbjct: 224 LRLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSE-------LDKAIGRNTNGVITKDEAEK 276
Query: 157 YRQ----AFKQTLCCRGGSHGSFARDQSSFRETMVDVASPQWSRAMT-WKRQPSRRPNNV 211
A + + + + R ++++ + +
Sbjct: 277 LFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKR 336
Query: 212 SASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCA 271
A + K+ + + A + LRR R++ V+ +C
Sbjct: 337 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCW 396
Query: 272 TPFAVYTTIN-YVDFPPGKYTTINY 295
TP +Y I + P + T+++
Sbjct: 397 TPIHIYVIIKALITIPETTFQTVSW 421
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 67.0 bits (163), Expect = 1e-12
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQ 122
+ + + ++ + Q + L +V F LCW P H + D
Sbjct: 325 EQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS 384
Query: 123 YFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGSFARDQSSF 182
+ WL +A + +S VNP +Y ++RQ F++ + +
Sbjct: 385 H---APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHHH 441
Query: 183 RET 185
Sbjct: 442 HHH 444
Score = 49.7 bits (118), Expect = 5e-07
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
S+ +++A +++RY+AI PL + RA IIA+ W+ F
Sbjct: 116 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 163
Score = 39.3 bits (91), Expect = 0.001
Identities = 10/77 (12%), Positives = 25/77 (32%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
+F +P+L+++ +Y RI L R + + + + ++
Sbjct: 205 FNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALT 264
Query: 97 VVTTFFLCWAPFHAQRL 113
+ L +L
Sbjct: 265 KMRAAALDAQKATPPKL 281
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 65.9 bits (160), Expect = 3e-12
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 62 RSRSRHSLGKRVEGTVHGETKRSQSRKSIIR----MLTAVVTTFFLCWAPFHAQRLIYLY 117
+ KRV T T + + M+ V+ F +CW PF ++ +
Sbjct: 367 WYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTH 426
Query: 118 ARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCR 168
+ ++ L+ YV+S +NP++Y ++++R+AF + L C
Sbjct: 427 CQTCH----VSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCG 473
Score = 42.1 bits (98), Expect = 2e-04
Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 20/239 (8%)
Query: 43 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFF 102
F++P V +L+Y RI + ++ R R ++ + + K + + + + T
Sbjct: 206 FYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS 265
Query: 103 LCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFK 162
++ + + V + + +
Sbjct: 266 PSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRR 325
Query: 163 QTLCCRGGSHGSFARDQSSFRETMVDVASPQWSRAMTWKRQPSRRPNNVSASADAHEGKT 222
L G + S + + W + + + K
Sbjct: 326 AALINMVFQMGETGVAGFTN--------SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKR 377
Query: 223 NYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTIN 281
T+ T + ++A +++A++ +C PF + +N
Sbjct: 378 VITTFRTGTWDAYGV------------PLREKKATQMVAIVLGAFIVCWLPFFLTHVLN 424
Score = 41.3 bits (96), Expect = 3e-04
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGL----RRAIRIIAVLWLFGFLCATP 273
S+ + A S++RY A+ P + Y RR +I +W+ F + P
Sbjct: 126 SIWNLCAISIDRYTAVVMP-VHYQHGTGQSSCRRVALMITAVWVLAFAVSCP 176
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 65.3 bits (158), Expect = 5e-12
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 50 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFH 109
+ L +R + +R++ + GT RS ++++ + V++ F CWAP
Sbjct: 379 VNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLF 438
Query: 110 AQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCR 168
L+ + + F++ ++S NPI+Y + + + R+AF + +
Sbjct: 439 ILLLLDVGCKVKTCDILFRAEYFLVLA---VLNSGTNPIIYTLTNKEMRRAFIRIMGRP 494
Score = 42.2 bits (98), Expect = 1e-04
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAV 276
SV +++A ++ERY+ + L + R +I+ W+ + +
Sbjct: 149 SVFSLLAIAIERYITMLKMKLHNGSNN-FRLFLLISACWVISLILGGLPIM 198
Score = 31.0 bits (69), Expect = 0.54
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 33 PMYELSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSI 90
Y L F + +L I+++Y RI +R+R+ + + EG K ++ +I
Sbjct: 218 KHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTI 275
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 65.1 bits (158), Expect = 5e-12
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 62 RSRSRHSLGKRVEGTVHGETKRSQSRKS----IIRMLTAVVTTFFLCWAPFHAQRLIYLY 117
+ KRV T T + S + R + A++ F + WAP++ LI +
Sbjct: 354 WYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTF 413
Query: 118 ARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGS 174
+ ++ I Y++ST+NP Y + + +++ FK L C + G+
Sbjct: 414 CAPC-----IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYKNIGA 465
Score = 45.1 bits (106), Expect = 2e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
SV+ ++ S +RY + PL + A +IA W+ F+ P
Sbjct: 110 SVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAP 157
Score = 37.8 bits (87), Expect = 0.004
Identities = 8/56 (14%), Positives = 25/56 (44%)
Query: 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRM 93
+ + F++P++++ ++Y I +SR R++ + + + I +
Sbjct: 190 TAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGI 245
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 63.6 bits (154), Expect = 2e-11
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKS----IIRMLTAVVTTFFLCWAPFHAQRLIYLYA 118
+ KRV T T + + + L ++ F LCW P+ ++ +
Sbjct: 340 YNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFC 399
Query: 119 RDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSH 172
++ NE L M Y++ST+NP++Y + + +++ FK+ L R G +
Sbjct: 400 KNC-----CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGEN 448
Score = 44.3 bits (104), Expect = 3e-05
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 226 SVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATP 273
S+ ++ ++RY ++ PL RA I W FL P
Sbjct: 95 SIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP 142
Score = 36.6 bits (84), Expect = 0.009
Identities = 8/56 (14%), Positives = 23/56 (41%)
Query: 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRM 93
+ + F++P L+++ Y +I +R R++ + + + I +
Sbjct: 175 TAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGI 230
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 61.3 bits (148), Expect = 1e-10
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 62 RSRSRHSLGKRVEGTVHGETKR----SQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLY 117
+ KRV T T ++ L ++ TF LCW PF ++++
Sbjct: 374 WYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI 433
Query: 118 ARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGSFAR 177
+ + + ++++ YV+S NP++Y S +R AF++ LC R S ++
Sbjct: 434 QDN-----LIRKEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQELLCLRRSSLKAYGN 487
Query: 178 DQSS 181
SS
Sbjct: 488 GYSS 491
Score = 42.0 bits (98), Expect = 2e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFL 269
S+ T+ +++RY AI P ++ +A II ++W+ L
Sbjct: 125 TASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 170
Score = 37.0 bits (85), Expect = 0.008
Identities = 7/63 (11%), Positives = 28/63 (44%)
Query: 38 SFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAV 97
S + F++P+++++ +Y+R+ + + R++ + + + I + +
Sbjct: 210 SSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 269
Query: 98 VTT 100
+
Sbjct: 270 TKS 272
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 58.0 bits (140), Expect = 1e-09
Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 63 SRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQ 122
+R++ + GT + ++ ++ ++ FF CW P++ I + +
Sbjct: 384 NRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFIL-LE 442
Query: 123 YFASLNEWLFMIAGGFY------YVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSHGSF 175
E+ + + +NPILY + K++ + + L F
Sbjct: 443 IIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLF 501
Score = 57.6 bits (139), Expect = 2e-09
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 224 YTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYV 283
Y+SV + S++RYLAI H S L + +W+ L P ++ ++
Sbjct: 131 YSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEA 190
Query: 284 D 284
D
Sbjct: 191 D 191
Score = 43.4 bits (102), Expect = 6e-05
Identities = 32/259 (12%), Positives = 69/259 (26%), Gaps = 48/259 (18%)
Query: 37 LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
+ +P +VI+ Y I I S + + + +
Sbjct: 212 QHIMVGLILPGIVILSCYCII---ISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIG 268
Query: 97 VVTTFF-LCWAPFHAQRLIYLYARD-------SQYFASLNEWLFMIAGGFYYVSSTVNPI 148
+ L R+ + N+ + G ++ + P+
Sbjct: 269 IGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR-NAKLKPV 327
Query: 149 LYNVMSVKYRQAFKQTLCCRGGSHGSFARDQSSFRETMVDVASPQWSRAMT------WKR 202
Y+ + R+A + + G G + F ++ + +W A W
Sbjct: 328 -YDSLD-AVRRAALINMVFQMGETGV-----AGFTNSLRMLQQKRWDEAAVNLAKSRWYN 380
Query: 203 QPSRRPNNVSASADAHEGKTNYTSVLTIVAFSMERYLAICHPLLSYAMSGLRRAIRIIAV 262
Q R V + + R+A++ +
Sbjct: 381 QTPNRAKRV-----------------------ITTFRTGTWDAYGSKGHQKRKALKTTVI 417
Query: 263 LWLFGFLCATPFAVYTTIN 281
L L F C P+ + +I+
Sbjct: 418 LILAFFACWLPYYIGISID 436
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 5e-05
Identities = 59/367 (16%), Positives = 90/367 (24%), Gaps = 146/367 (39%)
Query: 1 MDKNDTRILFIGSGEILYESGFCGMLEVPRGVPMYELSFLFFFFIPMLVIMLMYTRIGLR 60
MD TR L + G + E VP FF +
Sbjct: 1 MDAYSTRPLTLSHGSL--EHVL----LVPTA--------SFFI--------------ASQ 32
Query: 61 IRSRSRHSLGKRVEGTVHGETKRS------------------QSRKSIIRMLTAVVTTF- 101
++ + L + EG + + ++L +T F
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 102 --FLCWAPFHA----------------QRLI--YLYAR-----------DSQYFASLNE- 129
+L HA + LI Y+ AR +S F ++ E
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 130 --WLFMIAGGF----YYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSH-GSFAR---DQ 179
L I GG Y + LY Y L R D
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRD--LYQT----YH-VLVGDLIKFSAETLSELIRTTLDA 205
Query: 180 SSFRETMVDVASPQWSRAMTWKRQPSRRPN-NVSASADAHEGKTNYTSVLTIVAFSMERY 238
+++ + W PS P+ + S S I + Y
Sbjct: 206 EKVFTQGLNI--------LEWLENPSNTPDKDYLLSIPI--------SCPLIGVIQLAHY 249
Query: 239 LAICHPLLSYAMSGLRRAIR---------IIAVL-------------------WLF--GF 268
+ LL + LR ++ + AV LF G
Sbjct: 250 VVTAK-LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 269 LC--ATP 273
C A P
Sbjct: 309 RCYEAYP 315
Score = 35.4 bits (81), Expect = 0.028
Identities = 55/351 (15%), Positives = 101/351 (28%), Gaps = 112/351 (31%)
Query: 13 SGEILYESGF--CGMLEVPRGVPMYELSFLFFFFI--PMLVI--MLMYTRIGLRIRSRSR 66
E ++ G LE P P + +L I P++ + + Y + ++ +
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTP--DKDYLLSIPISCPLIGVIQLAHYV-VTAKLLGFTP 260
Query: 67 HSLGKRVEG-TVHGETKRSQSRKSIIRMLTAVVTTFFLCWAPFHAQRLIYLYARDSQYFA 125
L ++G T H + ++TAV W F +
Sbjct: 261 GELRSYLKGATGHSQG-----------LVTAVAIAETDSWESFFVSVRKAI--------- 300
Query: 126 SLNEWLFMIAGGF----YYVSSTVNPILYNV-----------M-SVK-YRQAFKQTLCCR 168
LF I G Y ++++ P + M S+ Q Q +
Sbjct: 301 ---TVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 169 GGSHGSFARDQS-SF---RETMVDVASPQWS--RAMTWKRQPSRRPNNVSASADAHEGKT 222
SH + S + +V V+ P S R A + + +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLV-VSGPPQSLYGLNLTLR-------KAKAPSGLDQSRI 407
Query: 223 NYTSVLTIVAFSMERYLAI---CH-PLLSYAMSGLRRAIRIIAVLWLFGFLCATPFAVYT 278
++ + FS R+L + H LL A + + + V + + P VY
Sbjct: 408 PFSE--RKLKFSN-RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-QIP--VYD 461
Query: 279 TIN------------------------------------YVDFPPGKYTTI 293
T + +DF PG + +
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Score = 33.1 bits (75), Expect = 0.13
Identities = 34/158 (21%), Positives = 45/158 (28%), Gaps = 74/158 (46%)
Query: 7 RILF-IG------------SGEILYESGFCGMLEVPRGVPMYELSFLFFFFIPMLVIM-L 52
+LF IG IL +S LE GVP S PML I L
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDS-----LENNEGVP----S-------PMLSISNL 344
Query: 53 MYTRIGLRIRSRSRH---------SL--GKR---VEG-------------TVHGETKRSQ 85
++ + + H SL G + V G + Q
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 86 S------RKSIIRMLTAVVTTFFL-CWAPFHAQRLIYL 116
S RK + FL +PFH+ L
Sbjct: 405 SRIPFSERK-------LKFSNRFLPVASPFHSH---LL 432
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 25.1 bits (55), Expect = 4.0
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 226 SVLTIVAFSMERYLAICHPL 245
S++ + A S++RY +I +
Sbjct: 3 SIVHLCAISLDRYWSITQAI 22
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 28.1 bits (63), Expect = 5.2
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 139 YYVSSTVNPILYNVMSVKYRQAFKQTLCCRGGSH-GSFARDQSSF 182
Y+ S+ +P+ + + + + L G H + D S+
Sbjct: 371 YFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAI 415
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 5.6
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 28/125 (22%)
Query: 194 WSRAMTWKRQPSRRPNNVSASADAHEGKTNYTSVLTIVAFSMER---YLAICHPLLS--- 247
S T +RQPS D Y +++ R YL + LL
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 248 ------YAMSGLRRAIRIIAVLWLFGFLCATPFAVYTTINYVDFPPGKYTTINYVDYPPP 301
+ G + + V + C F ++ +++ + V
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----WLNL--KNCNSPETV----- 198
Query: 302 LAGLQ 306
L LQ
Sbjct: 199 LEMLQ 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.431
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,845,681
Number of extensions: 282204
Number of successful extensions: 712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 53
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.2 bits)