RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14313
         (317 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 14/156 (8%)

Query: 37  LSFLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRMLTA 96
             F+  F IP++VI   Y ++   ++  +                   ++ K + RM+  
Sbjct: 206 YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ---------QQESATTQKAEKEVTRMVII 256

Query: 97  VVTTFFLCWAPFHAQRLIYLYARDSQYFASLNEWLFMIAGGFYYVSSTVNPILYNVMSVK 156
           +V  F +CW P+          + S +          I   F   S+  NP++Y +M+ +
Sbjct: 257 MVIAFLICWLPYAGVAFYIFTHQGSDF----GPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 312

Query: 157 YRQAFKQTLCCRGGSHGSFARDQSSFRETMVDVASP 192
           +R     TLCC     G      ++  +T     +P
Sbjct: 313 FRNCMVTTLCCGKNPLGD-DEASTTVSKTETSQVAP 347


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,174,545
Number of extensions: 52690
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)