BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14319
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 120/149 (80%)
Query: 50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
+ L + +KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 222 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 281
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDDSANRR
Sbjct: 282 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 341
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 342 ICLAEAFLTADTILNTLQNISEGLVVYPK 370
Score = 194 bits (494), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 146/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
GD KV+ LD++VT+KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA
Sbjct: 217 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 276
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
++KE+EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDD
Sbjct: 277 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 336
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
SANR +P T+++ + VK
Sbjct: 337 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 394
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
G D ++IR D YF+PI +Q+ LLDP SF G
Sbjct: 395 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 454
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
RA +Q QR + ++ L + +
Sbjct: 455 RASQQVQRFLEEEVYPLLKPY 475
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ C
Sbjct: 343 CLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDC 402
Query: 472 HEKIRVLSHQAGA 484
HEKIRVLS QA +
Sbjct: 403 HEKIRVLSQQAAS 415
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 120/149 (80%)
Query: 50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
+ L + +KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 241 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 300
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDDSANRR
Sbjct: 301 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 360
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 361 ICLAEAFLTADTILNTLQNISEGLVVYPK 389
Score = 194 bits (493), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 146/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
GD KV+ LD++VT+KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA
Sbjct: 236 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 295
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
++KE+EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDD
Sbjct: 296 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
SANR +P T+++ + VK
Sbjct: 356 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 413
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
G D ++IR D YF+PI +Q+ LLDP SF G
Sbjct: 414 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 473
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
RA +Q QR + ++ L + +
Sbjct: 474 RASQQVQRFLEEEVYPLLKPY 494
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 62/72 (86%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ CH
Sbjct: 363 LAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCH 422
Query: 473 EKIRVLSHQAGA 484
EKIRVLS QA +
Sbjct: 423 EKIRVLSQQAAS 434
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 120/149 (80%)
Query: 50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
+ L + +KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 241 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 300
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDDSANRR
Sbjct: 301 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 360
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 361 ICLAEAFLTADTILNTLQNISEGLVVYPK 389
Score = 194 bits (493), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 146/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
GD KV+ LD++VT+KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA
Sbjct: 236 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 295
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
++KE+EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDD
Sbjct: 296 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
SANR +P T+++ + VK
Sbjct: 356 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 413
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
G D ++IR D YF+PI +Q+ LLDP SF G
Sbjct: 414 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 473
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
RA +Q QR + ++ L + +
Sbjct: 474 RASQQVQRFLEEEVYPLLKPY 494
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 62/72 (86%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ CH
Sbjct: 363 LAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCH 422
Query: 473 EKIRVLSHQAGA 484
EKIRVLS QA +
Sbjct: 423 EKIRVLSQQAAS 434
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 119/149 (79%)
Query: 50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
+ L + +KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 222 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 281
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
EEPFE QIGSSAM YKRNPMRSE CSLAR LM+L + L TAS QW ERTLDDSANRR
Sbjct: 282 EEPFEKQQIGSSAMPYKRNPMRSECCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 341
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 342 ICLAEAFLTADTILNTLQNISEGLVVYPK 370
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 145/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
GD KV+ LD++VT+KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA
Sbjct: 217 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 276
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
++KE+EEPFE QIGSSAM YKRNPMRSE CSLAR LM+L + L TAS QW ERTLDD
Sbjct: 277 NLKEMEEPFEKQQIGSSAMPYKRNPMRSECCCSLARHLMTLVMDPLQTASVQWFERTLDD 336
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
SANR +P T+++ + VK
Sbjct: 337 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 394
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
G D ++IR D YF+PI +Q+ LLDP SF G
Sbjct: 395 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 454
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
RA +Q QR + ++ L + +
Sbjct: 455 RASQQVQRFLEEEVYPLLKPY 475
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ C
Sbjct: 343 CLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDC 402
Query: 472 HEKIRVLSHQAGA 484
HEKIRVLS QA +
Sbjct: 403 HEKIRVLSQQAAS 415
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
+ +L + KKA F++ +ITGQTYSR+ D + LS LGA+ K+ TD+R+L E+
Sbjct: 215 VEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGEL 274
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
EPFE QIGSSA YK+NP +SER C+L+R L++ Q +L + Q +ERTLDDSA RR
Sbjct: 275 LEPFEKDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRR 334
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLS 212
+ + LT + LL TLQN+ EGL V +T +++ I ++ ++
Sbjct: 335 XLIPDVLLTAEALLTTLQNIFEGLSV---QTDNVKKIVEDEIA 374
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
GD KV+ALD LVTKKA F++ +ITGQTYSR+ D + LS LGA+ K+ TD+R+L
Sbjct: 210 GDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQ 269
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
E+ EPFE QIGSSA YK+NP +SER C+L+R L++ Q +L + Q +ERTLDD
Sbjct: 270 AFGELLEPFEKDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTILADQGLERTLDD 329
Query: 344 SANR 347
SA R
Sbjct: 330 SAGR 333
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
+ + LT + LL TLQN+ EGL V +++ ++ E+ F+ E + + G DRQ H
Sbjct: 337 IPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAXXXLTEEGVDRQQAH 396
Query: 473 EKIRVLSHQA 482
IR + +A
Sbjct: 397 AVIRKTALEA 406
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 126
I+ QT R L+ + SI K+A ++R L + +E+EE F Q GSSAM +K
Sbjct: 220 ISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHK 279
Query: 127 RNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
RNP+ SE + LAR ++M+ ++N W ER + S+ R+ L ++ + + +
Sbjct: 280 RNPIGSENMTGLARVIRGYMMTAYEN-----VPLWHERDISHSSAERVILPDATIALNYM 334
Query: 183 LITLQNVLEGLVVYPK 198
L N+++ L VYP+
Sbjct: 335 LNRFGNIVKNLTVYPE 350
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 232 LDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIE 289
+++ V + G ++ I T QT R L+ + SI K+A ++R L + +E+E
Sbjct: 205 VEKYVCENLGLEAAPIST-QTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVE 263
Query: 290 EPFESTQIGSSAMAYKRNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSA 345
E F Q GSSAM +KRNP+ SE + LAR ++M+ ++N W ER + S+
Sbjct: 264 EAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYEN-----VPLWHERDISHSS 318
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 5 KYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFN 64
K L + + L+R KAG I +D V + +K G
Sbjct: 153 KLALWHEEMKRNLERFKQAKAGIEVGKISGAVGTYANIDPFVEQYVC-------EKLGLK 205
Query: 65 SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSA 122
++ I T QT R L+ + SI K A ++R L + +E+EE F Q GSSA
Sbjct: 206 AAPIST-QTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSA 264
Query: 123 MAYKRNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
M +KRNP+ SE + +AR ++M+ ++N W ER + S+ R+ L ++ +
Sbjct: 265 MPHKRNPIGSENMTGMARVIRGYMMTAYEN-----VPLWHERDISHSSAERIILPDATIA 319
Query: 179 TDCLLITLQNVLEGLVVYPK 198
+ +L N+++ L V+P+
Sbjct: 320 LNYMLNRFSNIVKNLTVFPE 339
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 232 LDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIE 289
+++ V +K G ++ I T QT R L+ + SI K A ++R L + +E+E
Sbjct: 194 VEQYVCEKLGLKAAPIST-QTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVE 252
Query: 290 EPFESTQIGSSAMAYKRNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSA 345
E F Q GSSAM +KRNP+ SE + +AR ++M+ ++N W ER + S+
Sbjct: 253 EFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYEN-----VPLWHERDISHSS 307
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 126
++ Q R L+ + A I ++A ++R L + E+EEPF Q GSSAM +K
Sbjct: 209 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 268
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
+NP+ ERL L+R + + SL + W ER + S+ R ++ T +++T
Sbjct: 269 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSSVERYVFPDATQTLYYMIVTA 327
Query: 187 QNVLEGLVV 195
NV+ + V
Sbjct: 328 TNVVRNMKV 336
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 248 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 305
++ Q R L+ + A I ++A ++R L + E+EEPF Q GSSAM +K
Sbjct: 209 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 268
Query: 306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQ 359
+NP+ ERL L+R + + SL + W ER + S+ + VF TQ
Sbjct: 269 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSS---VERYVFPDATQ 318
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 126
++ Q R L+ + A I ++A ++R L + E+EEPF Q GSSAM +K
Sbjct: 208 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 267
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
+NP+ ERL L+R + + SL + W ER + S+ R ++ T +++T
Sbjct: 268 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSSVERYVFPDATQTLYYMIVTA 326
Query: 187 QNVLEGLVV 195
NV+ + V
Sbjct: 327 TNVVRNMKV 335
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 248 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 305
++ Q R L+ + A I ++A ++R L + E+EEPF Q GSSAM +K
Sbjct: 208 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 267
Query: 306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQ 359
+NP+ ERL L+R + + SL + W ER + S+ + VF TQ
Sbjct: 268 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSS---VERYVFPDATQ 317
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 126
++ QT R L+ + S+ K A ++R L +E+EE F Q GSSAM +K
Sbjct: 209 VSTQTLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEEAFAKGQKGSSAMPHK 268
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQ---WMERTLDDSANRRLTLSESFLTTDCLL 183
RNP+ SE + ++R + + + TA W ER + S+ R+ L + + D L
Sbjct: 269 RNPIGSENITGISRVI----RGYITTAYENVPLWHERDISHSSAERIMLPDVTIALDYAL 324
Query: 184 ITLQNVLEGLVVY 196
N+++ L V+
Sbjct: 325 NRFTNIVDRLTVF 337
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 232 LDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIE 289
++ V K G ++ + T QT R L+ + S+ K A ++R L +E+E
Sbjct: 194 IESYVCKHLGIGTAPVST-QTLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVE 252
Query: 290 EPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ---WMERTLDDSA 345
E F Q GSSAM +KRNP+ SE + ++R + + + TA W ER + S+
Sbjct: 253 EAFAKGQKGSSAMPHKRNPIGSENITGISRVI----RGYITTAYENVPLWHERDISHSS 307
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 89 LGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLH 146
+ ++I +LA ++R L + + E+ E F Q GSS M +K+NP+ +E L +AR L S H
Sbjct: 229 IASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRS-H 287
Query: 147 QNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVV 195
+ W ER + S+ R L ++F L ++N ++ LVV
Sbjct: 288 VSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVV 336
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 268 LGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLH 325
+ ++I +LA ++R L + + E+ E F Q GSS M +K+NP+ +E L +AR L S H
Sbjct: 229 IASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRS-H 287
Query: 326 QNSLATASTQWMERTLD-DSANRF 348
+ W ER + SA RF
Sbjct: 288 VSIALENCVLWHERDISHSSAERF 311
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Query: 67 HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYK 126
H+IT Q R+ ++ L+ + A +LA ++R L+ EI E GSSAM +K
Sbjct: 211 HVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR-PEIGEV-VEGGGGSSAMPHK 268
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
NP SER+ SLAR++ +L + + W ER L +SAN R+ + E+ L D +L +
Sbjct: 269 ANPTASERIVSLARYVRALTHVAFENVAL-WHERDLTNSANERVWIPEALLALDEILTSA 327
Query: 187 QNVLEGLVV 195
VL+ + +
Sbjct: 328 LRVLKNVYI 336
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFE 293
R V ++ G H+IT Q R+ ++ L+ + A +LA ++R L+ EI E
Sbjct: 200 RRVAERLGL-PHHVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR-PEIGEV-V 256
Query: 294 STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSAN 346
GSSAM +K NP SER+ SLAR++ +L + + W ER L +SAN
Sbjct: 257 EGGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVAL-WHERDLTNSAN 308
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
+ E+ L D +L + VL+ + + + I ++ + LP++ TE + M+K G R +
Sbjct: 313 IPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAY 372
Query: 473 EKIR 476
+K +
Sbjct: 373 KKAK 376
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 47 TGVLSSLGA---SIHKKAGFNSSHIITGQTYSRKVDVIVTGV--LSSLGASIHKLATDLR 101
+G L+SLG + ++ + + T+ D + V L+ + S+ KLA D+
Sbjct: 194 SGTLASLGTRGLDVQRELARELNLGVPSITWHSARDAVAETVQFLALVSGSLGKLAMDIS 253
Query: 102 LL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159
++ + E+ EPF + SS M K+NP+ E + + AR + + H S+ A E
Sbjct: 254 IMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRN-HATSMLDAMIHDFE 312
Query: 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYP 197
R + E F +L + +L GL V+P
Sbjct: 313 RATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFP 350
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 265 LSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 322
L+ + S+ KLA D+ ++ + E+ EPF + SS M K+NP+ E + + AR +
Sbjct: 238 LALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVR 297
Query: 323 SLHQNSLATASTQWMERT 340
+ H S+ A ER
Sbjct: 298 N-HATSMLDAMIHDFERA 314
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 85 VLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF--- 141
+LS + ++ K D+ L+A + E S GSSAM +K+NP+ +E L +LARF
Sbjct: 240 LLSLVTGTLGKFGQDIALMAEIGS--EIRLSGGGGSSAMPHKQNPVNAETLVTLARFNAV 297
Query: 142 -LMSLHQN 148
+ +LHQ+
Sbjct: 298 QISALHQS 305
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 264 VLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF--- 320
+LS + ++ K D+ L+A + E S GSSAM +K+NP+ +E L +LARF
Sbjct: 240 LLSLVTGTLGKFGQDIALMAEIGS--EIRLSGGGGSSAMPHKQNPVNAETLVTLARFNAV 297
Query: 321 -LMSLHQN 327
+ +LHQ+
Sbjct: 298 QISALHQS 305
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 70 TGQTYSRKVDVIV--TGVLSSLGASIHKLATDLRLLAHMKEIEEPFEST---QIGSSAMA 124
T T+ + D IV VL + ++ K+A D L+ EI E FE T + GSS M
Sbjct: 226 TACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQ-TEIAEVFEPTAKGRGGSSTMP 284
Query: 125 YKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESF-LTTDCLL 183
+KRNP+ + + + A + +L +S+ + Q ER+L L+L E F LT L
Sbjct: 285 HKRNPVAAASVLAAANRVPAL-MSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALE 343
Query: 184 ITLQNVLEGLVV 195
TL +VL+G+ V
Sbjct: 344 RTL-DVLKGMEV 354
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 30/123 (24%)
Query: 249 TGQTYSRKVDVIV--TGVLSSLGASIHKLATDLRLLAHMKEIEEPFEST---QIGSSAMA 303
T T+ + D IV VL + ++ K+A D L+ EI E FE T + GSS M
Sbjct: 226 TACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQ-TEIAEVFEPTAKGRGGSSTMP 284
Query: 304 YKRNPMRSER-----------LCSLARFLMSLHQNSLATASTQW-------------MER 339
+KRNP+ + + S+ + ++ H+ SL +W +ER
Sbjct: 285 HKRNPVAAASVLAAANRVPALMSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALER 344
Query: 340 TLD 342
TLD
Sbjct: 345 TLD 347
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 84 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 138
G L L AS+ K+A D+R LA + EI P Q GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENQPGSSIMPGKVNPTQCEALTML 336
Query: 139 ARFLMS 144
+M
Sbjct: 337 CCQVMG 342
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 263 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 317
G L L AS+ K+A D+R LA + EI P Q GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENQPGSSIMPGKVNPTQCEALTML 336
Query: 318 ARFLMS 323
+M
Sbjct: 337 CCQVMG 342
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 251 QTYSRKVDVIV--TGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKR 306
Q + + D +V VL + S+ K D+ LL + E+ EP + GSS M +KR
Sbjct: 224 QPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKR 283
Query: 307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCV-------TQ 359
NP+ + L A + L ++L A Q ER+L + T C+ Q
Sbjct: 284 NPVGAAVLIGAATRVPGL-LSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQ 342
Query: 360 VKQHGKEND 368
V G E D
Sbjct: 343 VIAEGMEVD 351
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 72 QTYSRKVDVIV--TGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKR 127
Q + + D +V VL + S+ K D+ LL + E+ EP + GSS M +KR
Sbjct: 224 QPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKR 283
Query: 128 NPMRSERLCSLARFLMSL-----------HQNSLATASTQWMERTLDD 164
NP+ + L A + L H+ SL +W TL D
Sbjct: 284 NPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHAEW--ETLPD 329
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L+++ S+ K+A D+RLL + E+ P + GSS M K NP + E
Sbjct: 296 VEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLP--ENEPGSSIMPGKVNPTQVEA 353
Query: 314 LCSLARFLMSLHQNSLATASTQWME----------------RTLDDSANRFPTKSV 353
L + +M H S +E L DS N F T V
Sbjct: 354 LTMVCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCV 409
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L+++ S+ K+A D+RLL + E+ P + GSS M K NP + E
Sbjct: 296 VEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLP--ENEPGSSIMPGKVNPTQVEA 353
Query: 135 LCSLARFLMSLH 146
L + +M H
Sbjct: 354 LTMVCTQVMGNH 365
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V G L ++ AS+ K+A D+R LA + E+ P + GSS M K NP +SE
Sbjct: 271 VFAHGALKTVAASLMKIANDIRWLASGPRCGLGELSIP--ENEPGSSIMPGKVNPTQSEA 328
Query: 135 LCSL 138
+ L
Sbjct: 329 VTML 332
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V G L ++ AS+ K+A D+R LA + E+ P + GSS M K NP +SE
Sbjct: 271 VFAHGALKTVAASLMKIANDIRWLASGPRCGLGELSIP--ENEPGSSIMPGKVNPTQSEA 328
Query: 314 LCSL 317
+ L
Sbjct: 329 VTML 332
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 84 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 138
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 139 ARFLMS 144
+M
Sbjct: 337 CCQVMG 342
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 263 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 317
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 318 ARFLMS 323
+M
Sbjct: 337 CCQVMG 342
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 84 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 138
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 139 ARFLMS 144
+M
Sbjct: 337 CCQVMG 342
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 263 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 317
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 318 ARFLMS 323
+M
Sbjct: 337 CCQVMG 342
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 84 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 138
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 139 ARFLMS 144
+M
Sbjct: 337 CCQVMG 342
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 263 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 317
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 318 ARFLMS 323
+M
Sbjct: 337 CCQVMG 342
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 83 TGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCS 137
+G L ++ AS+ K+A D+R L + EI+ P Q GSS M K NP+ E +
Sbjct: 281 SGALKTIAASLTKIANDIRWMGSGPLTGLGEIQLP--DLQPGSSIMPGKVNPVLPEAVTQ 338
Query: 138 LA 139
+A
Sbjct: 339 VA 340
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 262 TGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCS 316
+G L ++ AS+ K+A D+R L + EI+ P Q GSS M K NP+ E +
Sbjct: 281 SGALKTIAASLTKIANDIRWMGSGPLTGLGEIQLP--DLQPGSSIMPGKVNPVLPEAVTQ 338
Query: 317 LA 318
+A
Sbjct: 339 VA 340
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 84 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 138
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 139 ARFLMS 144
+M
Sbjct: 337 CCQVMG 342
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 263 GVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSL 317
G L L AS+ K+A D+R LA + EI P + GSS M K NP + E L L
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCEALTML 336
Query: 318 ARFLMS 323
+M
Sbjct: 337 CCQVMG 342
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V +G+L + + K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 295 VTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AVQPGSSIMPGKVNPVIPE 351
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V +G+L + + K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 295 VTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AVQPGSSIMPGKVNPVIPE 351
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 GDKVKALDRLVTKKAGF----NSSH----IITGQTYSRKVDVIVTGV 49
GD+ ALDR +KAGF N++H + TG Y R +D+ GV
Sbjct: 64 GDEATALDRYRLQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGV 110
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 226 GDKVKALDRLVTKKAGFT----SSH----IITGQTYSRKVDVIVTGV 264
GD+ ALDR +KAGFT ++H + TG Y R +D+ GV
Sbjct: 64 GDEATALDRYRLQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGV 110
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V +G+L + + K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 278 VTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AVQPGSSIMPGKVNPVIPE 334
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V +G+L + + K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 278 VTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AVQPGSSIMPGKVNPVIPE 334
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 79 DVIV--TGVLSSLGASIHKLATDLRLLAHMKEI---EEPFESTQIGSSAMAYKRNPMRSE 133
D IV +G L++L S+ K+A D+R L E + GSS M K NP ++E
Sbjct: 297 DAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNE 356
Query: 134 RLCSLARFLM 143
L + +M
Sbjct: 357 ALTQVCVQVM 366
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 258 DVIV--TGVLSSLGASIHKLATDLRLLAHMKEI---EEPFESTQIGSSAMAYKRNPMRSE 312
D IV +G L++L S+ K+A D+R L E + GSS M K NP ++E
Sbjct: 297 DAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNE 356
Query: 313 RLCSLARFLM 322
L + +M
Sbjct: 357 ALTQVCVQVM 366
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 284 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 341
Query: 135 LCSLA 139
+ +A
Sbjct: 342 VTQVA 346
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 284 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 341
Query: 314 LCSLA 318
+ +A
Sbjct: 342 VTQVA 346
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 294 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 351
Query: 135 LCSLA 139
+ +A
Sbjct: 352 VTQVA 356
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 294 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 351
Query: 314 LCSLA 318
+ +A
Sbjct: 352 VTQVA 356
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 297 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 354
Query: 135 LCSLA 139
+ +A
Sbjct: 355 VTQVA 359
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 297 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 354
Query: 314 LCSLA 318
+ +A
Sbjct: 355 VTQVA 359
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 276 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 333
Query: 135 LCSLA 139
+ +A
Sbjct: 334 VTQVA 338
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L ++ S+ K+A D+R L + EI+ P Q GSS M K NP+ E
Sbjct: 276 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPEA 333
Query: 314 LCSLA 318
+ +A
Sbjct: 334 VTQVA 338
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V ++G +++ S+ K+A D+R L + E+ P + GSS M K NP + E
Sbjct: 302 VELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP--ENEPGSSIMPGKVNPTQCEA 359
Query: 135 LCSLARFLMSLH 146
+ +A +M H
Sbjct: 360 MTMVAAQVMGNH 371
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V ++G +++ S+ K+A D+R L + E+ P + GSS M K NP + E
Sbjct: 302 VELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP--ENEPGSSIMPGKVNPTQCEA 359
Query: 314 LCSLARFLMSLH 325
+ +A +M H
Sbjct: 360 MTMVAAQVMGNH 371
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L ++ S+ K+A D+R L + EI+ P Q G+S M K NP+ E
Sbjct: 275 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGASIMPGKVNPVLPEA 332
Query: 135 LCSLA 139
+ +A
Sbjct: 333 VTQVA 337
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRL-----LAHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L ++ S+ K+A D+R L + EI+ P Q G+S M K NP+ E
Sbjct: 275 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGASIMPGKVNPVLPEA 332
Query: 314 LCSLA 318
+ +A
Sbjct: 333 VTQVA 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,102,842
Number of Sequences: 62578
Number of extensions: 492764
Number of successful extensions: 1212
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 88
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)