Query psy14319
Match_columns 486
No_of_seqs 344 out of 2919
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:48:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 6E-44 1.3E-48 370.7 14.8 213 1-249 171-389 (459)
2 KOG1316|consensus 100.0 4.1E-41 8.8E-46 331.7 12.1 210 1-250 174-392 (464)
3 PLN02646 argininosuccinate lya 100.0 2.4E-38 5.3E-43 337.6 21.2 179 1-197 184-367 (474)
4 COG0165 ArgH Argininosuccinate 100.0 1.3E-37 2.9E-42 323.4 23.6 203 208-485 194-399 (459)
5 cd03302 Adenylsuccinate_lyase_ 100.0 5.7E-38 1.2E-42 332.4 19.8 216 206-485 182-397 (436)
6 PRK08470 adenylosuccinate lyas 100.0 1.7E-36 3.7E-41 321.4 26.5 204 206-485 180-385 (442)
7 COG0015 PurB Adenylosuccinate 100.0 2.2E-36 4.9E-41 314.9 22.4 208 205-485 183-392 (438)
8 PRK07492 adenylosuccinate lyas 100.0 3E-36 6.4E-41 318.7 22.7 192 230-485 195-388 (435)
9 cd01595 Adenylsuccinate_lyase_ 100.0 1.3E-35 2.9E-40 309.8 25.6 188 226-477 186-375 (381)
10 PRK07380 adenylosuccinate lyas 100.0 7.7E-36 1.7E-40 315.2 22.0 191 230-484 192-384 (431)
11 PRK04833 argininosuccinate lya 100.0 6.5E-36 1.4E-40 318.1 21.6 180 2-202 171-358 (455)
12 PRK08540 adenylosuccinate lyas 100.0 5.6E-35 1.2E-39 311.0 27.0 207 206-485 189-397 (449)
13 cd01360 Adenylsuccinate_lyase_ 100.0 1.4E-35 2.9E-40 310.1 20.0 184 230-477 189-374 (387)
14 TIGR00928 purB adenylosuccinat 100.0 8.9E-35 1.9E-39 308.4 26.2 206 206-484 183-390 (435)
15 PRK12308 bifunctional arginino 100.0 8.5E-35 1.8E-39 320.6 21.8 181 2-202 171-358 (614)
16 PRK06390 adenylosuccinate lyas 100.0 2E-34 4.3E-39 306.7 23.2 206 206-485 188-396 (451)
17 cd01360 Adenylsuccinate_lyase_ 100.0 5.6E-35 1.2E-39 305.5 17.5 217 2-249 153-372 (387)
18 cd01597 pCLME prokaryotic 3-ca 100.0 1.3E-33 2.9E-38 299.7 26.5 192 228-485 198-391 (437)
19 PRK06705 argininosuccinate lya 100.0 3E-34 6.4E-39 308.2 19.5 192 224-485 207-407 (502)
20 cd01595 Adenylsuccinate_lyase_ 100.0 2.1E-34 4.5E-39 300.8 17.5 216 2-247 151-371 (381)
21 PRK09053 3-carboxy-cis,cis-muc 100.0 1.2E-33 2.6E-38 300.9 23.1 205 206-485 194-400 (452)
22 PRK07492 adenylosuccinate lyas 100.0 8.7E-34 1.9E-38 299.9 19.8 214 2-246 159-375 (435)
23 PRK07380 adenylosuccinate lyas 100.0 6.4E-34 1.4E-38 300.6 18.7 214 2-246 156-372 (431)
24 KOG1316|consensus 100.0 2.5E-34 5.3E-39 283.8 13.7 192 226-484 206-400 (464)
25 PRK06705 argininosuccinate lya 100.0 2.7E-34 5.8E-39 308.6 14.7 208 1-247 177-395 (502)
26 PRK08470 adenylosuccinate lyas 100.0 9.3E-34 2E-38 300.6 18.7 214 2-246 156-372 (442)
27 TIGR00928 purB adenylosuccinat 100.0 1E-33 2.2E-38 300.3 18.3 218 2-247 159-379 (435)
28 PRK00855 argininosuccinate lya 100.0 1.6E-33 3.4E-38 300.6 18.8 193 225-485 203-400 (459)
29 PRK02186 argininosuccinate lya 100.0 8E-34 1.7E-38 324.6 16.0 214 1-248 577-796 (887)
30 PRK08540 adenylosuccinate lyas 100.0 1.6E-33 3.6E-38 299.8 17.0 214 2-247 165-385 (449)
31 TIGR00838 argH argininosuccina 100.0 3.5E-33 7.7E-38 297.6 19.1 190 230-485 204-396 (455)
32 cd03302 Adenylsuccinate_lyase_ 100.0 3E-33 6.5E-38 296.4 17.7 223 2-246 158-384 (436)
33 PRK02186 argininosuccinate lya 100.0 3.5E-33 7.5E-38 319.4 18.8 196 225-485 608-807 (887)
34 cd01597 pCLME prokaryotic 3-ca 100.0 7.2E-33 1.6E-37 294.1 18.9 217 2-247 161-379 (437)
35 cd01359 Argininosuccinate_lyas 100.0 1.6E-32 3.4E-37 291.4 18.0 195 225-485 179-377 (435)
36 PRK06389 argininosuccinate lya 100.0 8.3E-33 1.8E-37 289.7 15.4 205 2-247 165-377 (434)
37 TIGR00838 argH argininosuccina 100.0 1.5E-32 3.1E-37 293.0 16.2 208 2-246 169-383 (455)
38 PRK00855 argininosuccinate lya 100.0 5.6E-32 1.2E-36 288.7 15.7 208 2-246 173-387 (459)
39 PRK09285 adenylosuccinate lyas 100.0 3.1E-31 6.7E-36 281.7 20.9 190 229-485 226-415 (456)
40 PRK00485 fumC fumarate hydrata 100.0 1.3E-31 2.9E-36 285.7 17.7 192 2-203 203-401 (464)
41 PRK09053 3-carboxy-cis,cis-muc 100.0 1.5E-31 3.3E-36 284.8 17.7 189 2-203 170-360 (452)
42 PRK06390 adenylosuccinate lyas 100.0 1.5E-31 3.3E-36 284.6 17.5 213 2-246 164-383 (451)
43 PRK08937 adenylosuccinate lyas 100.0 7.5E-31 1.6E-35 253.7 17.6 159 264-485 22-182 (216)
44 cd01334 Lyase_I Lyase class I 100.0 2.6E-31 5.7E-36 272.0 15.1 181 2-196 142-325 (325)
45 PRK06389 argininosuccinate lya 100.0 1.8E-30 3.8E-35 272.2 21.0 191 224-482 194-386 (434)
46 KOG2700|consensus 100.0 1.6E-30 3.4E-35 264.9 19.8 235 56-405 222-456 (481)
47 cd01598 PurB PurB_like adenylo 100.0 1.4E-30 2.9E-35 274.2 20.0 185 229-480 204-388 (425)
48 PRK12273 aspA aspartate ammoni 100.0 1.4E-30 3.1E-35 278.1 17.9 189 2-203 205-403 (472)
49 cd01359 Argininosuccinate_lyas 100.0 8.7E-31 1.9E-35 278.1 16.2 208 2-246 149-364 (435)
50 KOG2700|consensus 100.0 3.2E-29 6.9E-34 255.4 26.3 215 204-482 193-407 (481)
51 PLN02848 adenylosuccinate lyas 100.0 3.7E-30 7.9E-35 273.2 19.7 187 228-481 228-414 (458)
52 COG0015 PurB Adenylosuccinate 100.0 2.4E-30 5.2E-35 269.9 17.7 182 2-202 160-350 (438)
53 PRK12425 fumarate hydratase; P 100.0 4.5E-30 9.8E-35 273.3 17.3 187 2-203 201-399 (464)
54 cd01357 Aspartase Aspartase. T 100.0 9.4E-30 2E-34 270.5 17.8 189 2-203 198-396 (450)
55 TIGR02426 protocat_pcaB 3-carb 100.0 1.2E-29 2.7E-34 260.8 17.5 176 2-193 161-338 (338)
56 PRK00485 fumC fumarate hydrata 100.0 2.1E-29 4.6E-34 268.8 18.3 180 229-479 243-429 (464)
57 PRK13353 aspartate ammonia-lya 100.0 3.1E-29 6.6E-34 267.9 18.3 189 2-203 203-401 (473)
58 cd01596 Aspartase_like asparta 100.0 2.6E-29 5.7E-34 266.8 17.6 192 2-203 198-396 (450)
59 TIGR00979 fumC_II fumarate hyd 100.0 4.3E-29 9.4E-34 265.6 17.0 190 2-203 200-398 (458)
60 PLN00134 fumarate hydratase; P 100.0 6.8E-29 1.5E-33 264.1 18.3 192 2-203 195-393 (458)
61 PRK09285 adenylosuccinate lyas 100.0 4.7E-29 1E-33 265.0 16.5 190 2-203 186-377 (456)
62 PRK12425 fumarate hydratase; P 100.0 2.6E-28 5.6E-33 259.9 20.8 181 229-480 241-428 (464)
63 cd01598 PurB PurB_like adenylo 100.0 1E-28 2.2E-33 260.1 16.6 187 2-203 164-355 (425)
64 PLN02848 adenylosuccinate lyas 100.0 4.2E-28 9E-33 257.6 19.0 192 2-203 189-380 (458)
65 PLN00134 fumarate hydratase; P 100.0 1.1E-27 2.4E-32 254.9 20.5 181 229-480 235-422 (458)
66 TIGR00979 fumC_II fumarate hyd 100.0 1.1E-27 2.4E-32 254.9 20.4 181 229-480 240-427 (458)
67 TIGR00839 aspA aspartate ammon 100.0 5E-28 1.1E-32 257.8 17.1 188 2-203 201-399 (468)
68 cd01362 Fumarase_classII Class 100.0 7.3E-28 1.6E-32 256.2 18.0 190 2-203 199-397 (455)
69 PRK13353 aspartate ammonia-lya 100.0 3E-27 6.5E-32 252.6 21.9 178 229-485 243-431 (473)
70 PRK12273 aspA aspartate ammoni 100.0 2.5E-27 5.5E-32 253.1 21.0 180 229-484 245-432 (472)
71 cd01596 Aspartase_like asparta 99.9 4.3E-27 9.3E-32 249.9 20.2 180 229-479 238-424 (450)
72 PRK05975 3-carboxy-cis,cis-muc 99.9 2.3E-27 4.9E-32 244.9 17.0 176 2-195 170-347 (351)
73 cd01357 Aspartase Aspartase. T 99.9 7E-27 1.5E-31 248.6 21.0 173 229-476 238-421 (450)
74 PRK14515 aspartate ammonia-lya 99.9 2.4E-27 5.3E-32 252.8 17.2 191 2-203 209-407 (479)
75 cd01362 Fumarase_classII Class 99.9 2E-26 4.4E-31 245.2 22.9 180 229-479 239-425 (455)
76 PRK14515 aspartate ammonia-lya 99.9 5.4E-26 1.2E-30 242.5 19.8 180 229-484 249-436 (479)
77 TIGR00839 aspA aspartate ammon 99.9 1.1E-25 2.3E-30 239.9 20.3 177 229-484 241-428 (468)
78 TIGR02426 protocat_pcaB 3-carb 99.9 1.4E-24 3E-29 223.4 16.3 138 229-434 199-338 (338)
79 PRK04833 argininosuccinate lya 99.9 1E-24 2.2E-29 232.4 14.1 188 230-485 206-398 (455)
80 cd01334 Lyase_I Lyase class I 99.9 1.1E-24 2.5E-29 223.1 13.3 144 230-437 179-325 (325)
81 COG0114 FumC Fumarase [Energy 99.9 7.1E-24 1.5E-28 214.2 17.5 211 191-480 212-429 (462)
82 PLN02646 argininosuccinate lya 99.9 2.2E-24 4.7E-29 230.6 14.2 191 229-485 219-412 (474)
83 PRK08937 adenylosuccinate lyas 99.9 2.4E-24 5.3E-29 208.2 12.4 118 85-203 22-141 (216)
84 PRK12308 bifunctional arginino 99.9 3.2E-24 7E-29 236.7 14.5 187 229-485 205-398 (614)
85 PF00206 Lyase_1: Lyase; Inte 99.9 4.6E-24 1E-28 217.5 8.4 132 2-144 174-312 (312)
86 PRK05975 3-carboxy-cis,cis-muc 99.9 3E-23 6.4E-28 214.3 14.4 153 206-436 194-347 (351)
87 COG1027 AspA Aspartate ammonia 99.9 2.2E-22 4.8E-27 202.8 16.9 205 197-480 220-431 (471)
88 COG1027 AspA Aspartate ammonia 99.9 1.2E-21 2.5E-26 197.7 16.4 189 2-202 204-401 (471)
89 COG0114 FumC Fumarase [Energy 99.8 3.2E-20 7E-25 187.8 17.4 188 2-203 202-400 (462)
90 KOG1317|consensus 99.8 1.4E-20 3.1E-25 185.2 8.5 207 194-479 240-453 (487)
91 PF00206 Lyase_1: Lyase; Inte 99.8 3.3E-19 7.2E-24 181.8 9.8 93 231-323 213-312 (312)
92 KOG1317|consensus 99.7 1.2E-16 2.6E-21 157.7 9.2 190 2-202 227-424 (487)
93 cd01594 Lyase_I_like Lyase cla 99.6 3.8E-15 8.2E-20 144.7 13.3 108 78-186 121-230 (231)
94 cd01594 Lyase_I_like Lyase cla 99.4 8.8E-13 1.9E-17 128.1 10.5 76 257-332 121-198 (231)
95 PF14698 ASL_C2: Argininosucci 98.6 6.1E-08 1.3E-12 77.5 4.8 35 451-485 1-35 (70)
96 PF08328 ASL_C: Adenylosuccina 97.7 4.7E-05 1E-09 65.9 4.6 52 426-480 29-80 (115)
97 PF10397 ADSL_C: Adenylosuccin 97.1 0.00067 1.5E-08 55.7 4.4 37 449-485 1-37 (81)
98 PF08328 ASL_C: Adenylosuccina 85.4 1.8 4E-05 37.8 5.2 72 157-247 2-73 (115)
99 COG0345 ProC Pyrroline-5-carbo 22.9 3E+02 0.0064 27.8 7.3 55 428-482 149-208 (266)
100 PRK07634 pyrroline-5-carboxyla 21.0 3.4E+02 0.0074 26.0 7.3 49 435-483 161-214 (245)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-44 Score=370.69 Aligned_cols=213 Identities=19% Similarity=0.198 Sum_probs=187.8
Q ss_pred ChhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHH
Q psy14319 1 MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVD 79 (486)
Q Consensus 1 ~~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~ 79 (486)
++|++||.||.+|+.++.++++.+ ++ |++|++|++|| ||| +++|++|||+.+. |+.|++++|||+
T Consensus 171 lay~~~l~RD~~Rl~d~~~rvn~s-PL-GagAlaGt~~~--iDR----------~~tA~lLGF~~~~~Nsldavs~Rdf~ 236 (459)
T COG0165 171 LAYAEMLARDIERLRDALKRVNVS-PL-GAGALAGTPFP--IDR----------ERTAELLGFDAVTRNSLDAVSDRDFI 236 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-Cc-cccccCCCCCC--CCH----------HHHHHHcCCchhhcCchhhhhhHHHH
Confidence 589999999999999999999953 33 38999999997 995 8999999999996 677999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHH--Hhhcc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSL--ATAST 155 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l--~~~~~ 155 (486)
+|+++++++++++|||||+||++|++ |+.|..|. +.++||||||||||||++|++|++++++.|.+.+++ +.++|
T Consensus 237 le~l~~~s~~~~~LSRlaedlI~wss~EfgfI~l~D-~~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~lP 315 (459)
T COG0165 237 LEFLSAAALIMVHLSRLAEDLILWSSPEFGFIELPD-EFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLP 315 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCceEeCCc-ccccccccCCCCCCCcHHHHHHHhhhhhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999996 67666654 567899999999999999999999999999998755 35789
Q ss_pred ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319 156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL 235 (486)
Q Consensus 156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~ 235 (486)
..|+||+|+.+ .++++++.++..++.++..++++|+||+++|++.. ..|++ .+++++++
T Consensus 316 laYnrDlQedk---e~lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a~----~~gfs--------------~aTdlAd~ 374 (459)
T COG0165 316 LAYNRDLQEDK---EPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAA----EAGFS--------------TATDLADY 374 (459)
T ss_pred ccccHHHHhhh---HHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHh----hcccc--------------hHHHHHHH
Confidence 99999999875 89999999999999999999999999999999843 34444 57899998
Q ss_pred HH-HHcCCCCCcccc
Q psy14319 236 VT-KKAGFTSSHIIT 249 (486)
Q Consensus 236 lA-~~LGf~~a~~~~ 249 (486)
++ +.++|+.+|.+.
T Consensus 375 lv~kGvPFReAh~iv 389 (459)
T COG0165 375 LVRKGVPFREAHEIV 389 (459)
T ss_pred HHHcCCCHHHHHHHH
Confidence 65 588888876433
No 2
>KOG1316|consensus
Probab=100.00 E-value=4.1e-41 Score=331.66 Aligned_cols=210 Identities=19% Similarity=0.198 Sum_probs=185.4
Q ss_pred ChhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccH
Q psy14319 1 MKFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKV 78 (486)
Q Consensus 1 ~~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~ 78 (486)
+.|+..|.||..|+.++.+|++. ++| ++|++|.+|+ ||| +.+++.|||.++. |++++|++|||
T Consensus 174 lSha~~l~~D~~Rl~q~~~R~n~~PLG---agALAGnpl~--iDR----------~~la~~LgF~~v~~NSm~AvsDRDF 238 (464)
T KOG1316|consen 174 LSHAEQLTRDLGRLVQIRKRLNQLPLG---AGALAGNPLG--IDR----------EFLAEELGFEGVIMNSMDAVSDRDF 238 (464)
T ss_pred HHHHHHHHhHHHHHHHHHHHhccCCcc---cchhcCCCCC--ccH----------HHHHHhcCCcccchhhhhccccchh
Confidence 46899999999999999999995 455 8999999997 995 7899999999996 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc--cccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHh--
Q psy14319 79 DVIVTGVLSSLGASIHKLATDLRLLAH--MKE--IEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLAT-- 152 (486)
Q Consensus 79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~e--l~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~-- 152 (486)
++||++|.++++.|+||+|+|+++|++ |++ +++.| .+|||+||||||||.+|++||++++|.|.+.+++++
T Consensus 239 Vvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~lSDay---STGSSlMPQKKNpDslELlRgksgrV~gdl~g~lmt~K 315 (464)
T KOG1316|consen 239 VVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTLSDAY---STGSSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLK 315 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhheeeccccCceeecccc---ccCcccCCCCCCCCHHHHhccccceehhhhHHHHHHhc
Confidence 999999999999999999999999995 554 55555 569999999999999999999999999999997764
Q ss_pred hccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHH
Q psy14319 153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKAL 232 (486)
Q Consensus 153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i 232 (486)
+.|+.||+|+|+++ +++++.+.++..++.++.+++++++||+++|++. +++ +| -++++
T Consensus 316 G~PstYnkDlQeDK---ep~Fds~~tv~~~l~v~tgv~stltvn~e~m~~a--Lt~--------dm---------lATdl 373 (464)
T KOG1316|consen 316 GLPSTYNKDLQEDK---EPLFDSSKTVSDSLQVATGVISTLTVNQENMEKA--LTP--------DM---------LATDL 373 (464)
T ss_pred CCccccccchhhhh---hHHHhhHHHHHHHHHHHHHHhhheeECHHHHhhc--cCc--------hh---------hHhHH
Confidence 79999999999985 8999999999999999999999999999999983 222 22 24777
Q ss_pred HHH-HHHHcCCCCCccccc
Q psy14319 233 DRL-VTKKAGFTSSHIITG 250 (486)
Q Consensus 233 ~~~-lA~~LGf~~a~~~~~ 250 (486)
+++ +.++++|+..|++++
T Consensus 374 A~YLVrKGvPFRqtHhisG 392 (464)
T KOG1316|consen 374 AYYLVRKGVPFRQTHHISG 392 (464)
T ss_pred HHHHHHcCCCchhhhhhhH
Confidence 777 678999999877654
No 3
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=2.4e-38 Score=337.58 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=143.9
Q ss_pred ChhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCc-ccccccccHH
Q psy14319 1 MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHII-TGQTYSRKVD 79 (486)
Q Consensus 1 ~~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~-~~av~~RD~~ 79 (486)
.+|+++|.||.+|+.++.++++.+ ++| +++++|++++ +|+ +++|++|||..|..| .|++++||++
T Consensus 184 ~~~~~~l~rd~~RL~~~~~r~~~~-pLG-gga~aGt~~~--idr----------~~~A~~LGf~~~~~n~~da~~~RD~~ 249 (474)
T PLN02646 184 LSHVEQLERDAGRLVDCRPRVNFC-PLG-SCALAGTGLP--IDR----------FMTAKDLGFTAPMRNSIDAVSDRDFV 249 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCc-chhhcCCCCC--CCH----------HHHHHHhCCCCCCCChHHHHhccHHH
Confidence 379999999999999999999853 442 4999999996 985 689999999988765 4899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhcc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAST 155 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~ 155 (486)
+|+++++++++++|+|||+||++|++ |+++.+| .++++|||||||||||+++|++|++|+++.|+..+++. .++|
T Consensus 250 ~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~v~~~-d~~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~p 328 (474)
T PLN02646 250 LEFLFANSITAIHLSRLGEEWVLWASEEFGFVTPS-DAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTVLALCKGLP 328 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeeC-CCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHhcCCc
Confidence 99999999999999999999999996 9999988 57899999999999999999999999999999987543 4567
Q ss_pred ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCH
Q psy14319 156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYP 197 (486)
Q Consensus 156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~ 197 (486)
.+|+||+|+. |.++++++..+..++..+..++++|+||+
T Consensus 329 ~~~~rD~q~~---~~~l~~~~~~~~~~l~~~~~~l~~l~v~~ 367 (474)
T PLN02646 329 TAYNRDLQED---KEPLFDSVDTVSDMLEVATEFAQNITFNP 367 (474)
T ss_pred hHhhcchhhH---HHHHHHHHHHHHHHHHHHHHHHccCEECH
Confidence 7888877432 44555444444444444333333333333
No 4
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=323.41 Aligned_cols=203 Identities=20% Similarity=0.178 Sum_probs=181.6
Q ss_pred CCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q psy14319 208 DNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-- 284 (486)
Q Consensus 208 ~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-- 284 (486)
+|.|++ +..|+..+..++++++.|||+.+. |..+++++||+++|+++++++++.+|+|+|+||.+|+|
T Consensus 194 sPLGag---------AlaGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~E 264 (459)
T COG0165 194 SPLGAG---------ALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPE 264 (459)
T ss_pred CCcccc---------ccCCCCCCCCHHHHHHHcCCchhhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 467776 467888999999999999999877 78899999999999999999999999999999999999
Q ss_pred hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccC
Q psy14319 285 MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHG 364 (486)
Q Consensus 285 ~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g 364 (486)
||.|..| ++.++|||||||||||+.+|++|++++++.|.+.+++..... ++ .+
T Consensus 265 fgfI~l~-D~~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~------lP--------------------la 317 (459)
T COG0165 265 FGFIELP-DEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKG------LP--------------------LA 317 (459)
T ss_pred CceEeCC-cccccccccCCCCCCCcHHHHHHHhhhhhHHHHHHHHHHHhc------Cc--------------------cc
Confidence 9999987 678999999999999999999999999999999988766321 11 24
Q ss_pred CcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHH
Q psy14319 365 KENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRH 444 (486)
Q Consensus 365 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~ 444 (486)
||+|+ |+.+ ..+++++.++..++..+..++++|+||+++|++.
T Consensus 318 YnrDl--------------------------------Qedk-----e~lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a 360 (459)
T COG0165 318 YNRDL--------------------------------QEDK-----EPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREA 360 (459)
T ss_pred ccHHH--------------------------------Hhhh-----HHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHH
Confidence 55565 7776 5889999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 445 IDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 445 l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+.. ||++|+++|+.||++|+|||+||++|+++|+.+.++
T Consensus 361 ~~~--gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~ 399 (459)
T COG0165 361 AEA--GFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEER 399 (459)
T ss_pred hhc--ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 854 689999999999999999999999999999998764
No 5
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=5.7e-38 Score=332.37 Aligned_cols=216 Identities=68% Similarity=0.928 Sum_probs=190.6
Q ss_pred CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14319 206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM 285 (486)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~ 285 (486)
+.|+.|+... +...+.++-..++.+.+++++.|||..+.+.++++++||+++|++++++.++++|+|||+||++|+++
T Consensus 182 ~~GavGt~a~--~~~~~~~dr~~~~~v~~~~a~~LGl~~~~~~~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~s~ 259 (436)
T cd03302 182 VKGTTGTQAS--FLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLANL 259 (436)
T ss_pred CcChhhhhHH--HHhcCCchHHHHHHHHHHHHHHcCCCCCCCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5677887531 00111112122578889999999999875677788999999999999999999999999999999999
Q ss_pred hhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCC
Q psy14319 286 KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGK 365 (486)
Q Consensus 286 ~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~ 365 (486)
+||.+|+..+++|||||||||||+.+|+++++|+.+.|++.+++......|+|||+++|.+
T Consensus 260 ~el~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~g~~~~~~~~~~~~~~Erd~~~~~~------------------- 320 (436)
T cd03302 260 KEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWFERTLDDSAN------------------- 320 (436)
T ss_pred ceecccccCCCCCcccCCCccCcHHHHHHHHHHHHHHhhHHHHHHHhhccccccCCchhHH-------------------
Confidence 9999999889999999999999999999999999999999999978888999999876532
Q ss_pred cchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHH
Q psy14319 366 ENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHI 445 (486)
Q Consensus 366 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l 445 (486)
+|..+++++.++..++..+..++++|+||++||++++
T Consensus 321 -------------------------------------------~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l 357 (436)
T cd03302 321 -------------------------------------------RRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHI 357 (436)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHH
Confidence 3558899999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 446 DQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 446 ~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+.+++++++|.+++.|+++|+|||+||++|+++++++.++
T Consensus 358 ~~~~g~~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~~ 397 (436)
T cd03302 358 RQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAAV 397 (436)
T ss_pred HhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
No 6
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.7e-36 Score=321.43 Aligned_cols=204 Identities=28% Similarity=0.409 Sum_probs=182.5
Q ss_pred CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319 206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284 (486)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss- 284 (486)
++|++|+..+ . ...+++++++.|||..+ +..+++++||+++|++++|+.++++|+|||+||++|++
T Consensus 180 lgGAvGt~a~---------~---~~~v~~~~a~~LGl~~~-~~~~~v~~RD~~~e~~~~La~~a~~L~ria~Di~~l~~~ 246 (442)
T PRK08470 180 ISGAMGNFAH---------A---PLELEELVCEELGLKPA-PVSNQVIQRDRYARLASALALLASSCEKIAVAIRHLQRT 246 (442)
T ss_pred Ccchhccccc---------C---ChHHHHHHHHHcCCCCC-CCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677777521 1 26778999999999965 34567899999999999999999999999999999998
Q ss_pred -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319 285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH 363 (486)
Q Consensus 285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
|+|+.|+|+.+++|||||||||||+.+|+++++++.+.|....++.. ...|+|||+++|.
T Consensus 247 E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~~-~~~~~eRD~~~~~------------------ 307 (442)
T PRK08470 247 EVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPALEN-VALWHERDISHSS------------------ 307 (442)
T ss_pred ccceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHh-chHhhccCCchhH------------------
Confidence 99999999999999999999999999999999999999998766654 6788999886542
Q ss_pred CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319 364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR 443 (486)
Q Consensus 364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~ 443 (486)
.+|..+++++.++..++..+..++++|+||++||++
T Consensus 308 --------------------------------------------~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 343 (442)
T PRK08470 308 --------------------------------------------VERFILPDAFITTDFMLHRLNNVIENLVVYPENMMK 343 (442)
T ss_pred --------------------------------------------HHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 146789999999999999999999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
|++.+.|+++||++++.|+++|+|||+||++|++++.++.++
T Consensus 344 nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V~~~~~~a~~~ 385 (442)
T PRK08470 344 NLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWED 385 (442)
T ss_pred HHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998664
No 7
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=314.95 Aligned_cols=208 Identities=35% Similarity=0.474 Sum_probs=193.5
Q ss_pred cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319 205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH 284 (486)
Q Consensus 205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss 284 (486)
.++|++||. +..++.+..+++++++.|||.++ +.+.|+..||+++|+.++|+.+++++.|||.||++|++
T Consensus 183 ~i~Ga~Gt~---------Aa~~~~~~~ve~~v~e~LGL~~~-p~stq~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~ 252 (438)
T COG0015 183 KIGGAVGTL---------AALGDLGAEVEERVAEKLGLKPA-PISTQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQR 252 (438)
T ss_pred ccccchhhH---------hhcCchhHHHHHHHHHHcCCCCC-CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588899985 45677789999999999999975 56669999999999999999999999999999999998
Q ss_pred --hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhc
Q psy14319 285 --MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQ 362 (486)
Q Consensus 285 --~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (486)
++|+.|||.++|+|||+|||||||+.+|++.++++.+.+.....+... ..|||||+++|+++
T Consensus 253 ~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e~~-~~whERdlt~ssve--------------- 316 (438)
T COG0015 253 TEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLENL-VLWHERDLTDSSVE--------------- 316 (438)
T ss_pred ccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHh-HHHHhccccchHHH---------------
Confidence 889999999999999999999999999999999999999999888876 99999999987643
Q ss_pred cCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHH
Q psy14319 363 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQ 442 (486)
Q Consensus 363 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~ 442 (486)
|..+|++|.+++.++..+..++++|+||+++|+
T Consensus 317 -----------------------------------------------r~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~ 349 (438)
T COG0015 317 -----------------------------------------------RVILPDAFIAADGALNRLLNVLEGLEVNPERMR 349 (438)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHH
Confidence 558999999999999999999999999999999
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 443 RHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 443 ~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+|++..+|++.++.++..|+++|+|+++||++|++.++.+.++
T Consensus 350 ~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~ 392 (438)
T COG0015 350 RNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQ 392 (438)
T ss_pred HHHhhccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887654
No 8
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=3e-36 Score=318.71 Aligned_cols=192 Identities=28% Similarity=0.396 Sum_probs=175.6
Q ss_pred HHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCC
Q psy14319 230 KALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRN 307 (486)
Q Consensus 230 ~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrN 307 (486)
+.+.+++++.|||..+ +..+++++||++++++++++.++++|+|||+||++|++ |+|+.|+|+++++||||||||||
T Consensus 195 ~~~~~~~a~~LGl~~~-~~~~~v~~RD~~~e~~~~la~~~~~L~ria~Di~~l~~~e~~El~e~~~~g~~GSS~MPhKrN 273 (435)
T PRK07492 195 PRVEEHVAKKLGLKPE-PVSTQVIPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEVLEAEEFFSPGQKGSSAMPHKRN 273 (435)
T ss_pred hHHHHHHHHHhCCCCC-CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCCCCCCCCCCCCCC
Confidence 5788999999999974 45567899999999999999999999999999999998 99999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319 308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP 387 (486)
Q Consensus 308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~ 387 (486)
|+.+|+++++++.+.|....++.. +..++|||+.+|.
T Consensus 274 P~~~E~i~~~a~~~~~~~~~~~~~-~~~~~eRD~~~~~------------------------------------------ 310 (435)
T PRK07492 274 PVLTENLTGLARLVRSYVVPAMEN-VALWHERDISHSS------------------------------------------ 310 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-cchhhccCChHHH------------------------------------------
Confidence 999999999999999997766554 5788898876542
Q ss_pred CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319 388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 467 (486)
Q Consensus 388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~ 467 (486)
.+|..+++++.++..++..+..++++|+||++||++|++.+.++++||.+++.|+++|+|
T Consensus 311 --------------------~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~ 370 (435)
T PRK07492 311 --------------------VERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVS 370 (435)
T ss_pred --------------------HhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCC
Confidence 157789999999999999999999999999999999999989999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhc
Q psy14319 468 RQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 468 fr~Ah~~v~~~~~~a~~~ 485 (486)
||+||++|+++++++.++
T Consensus 371 r~~Ah~~V~~~~~~a~~~ 388 (435)
T PRK07492 371 REDAYRLVQRNAMKVWEQ 388 (435)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998664
No 9
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=1.3e-35 Score=309.82 Aligned_cols=188 Identities=37% Similarity=0.555 Sum_probs=171.8
Q ss_pred CCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCC
Q psy14319 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMA 303 (486)
Q Consensus 226 g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMP 303 (486)
|+.++.+++++++.|||..+ +..+++++||+++|++++++.++.+|+|||+||++|++ ||||.+|+.++++||||||
T Consensus 186 ~~~~~~~~~~~a~~LGl~~~-~~~~~~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~s~e~gev~~~~~~~~~GSS~MP 264 (381)
T cd01595 186 GPKGPEVEERVAEKLGLKVP-PITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMP 264 (381)
T ss_pred CCcHHHHHHHHHHHcCCCCC-CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccCCCCCCccCC
Confidence 34579999999999999653 44556679999999999999999999999999999999 9999999878899999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccc
Q psy14319 304 YKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPIL 383 (486)
Q Consensus 304 qKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~ 383 (486)
|||||+.+|+++++++++.|.+.+++... ..++|||+.+|.
T Consensus 265 qK~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~erd~~~~~-------------------------------------- 305 (381)
T cd01595 265 HKRNPIDSENIEGLARLVRALAAPALENL-VQWHERDLSDSS-------------------------------------- 305 (381)
T ss_pred CcCCcHHHHHHHHHHHHHHHHHHHHHHhh-hHhhccCCcHHH--------------------------------------
Confidence 99999999999999999999999998775 888888875431
Q ss_pred ccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHH
Q psy14319 384 NQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK 463 (486)
Q Consensus 384 ~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~ 463 (486)
-+|..+++++.++.+++.++..++++|+||+++|+++++.++++++||.+++.|++
T Consensus 306 ------------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~ 361 (381)
T cd01595 306 ------------------------VERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAK 361 (381)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 14679999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHH
Q psy14319 464 AGGDRQVCHEKIRV 477 (486)
Q Consensus 464 ~g~~fr~Ah~~v~~ 477 (486)
+|+|||+||++|++
T Consensus 362 ~g~g~~~Ah~~v~~ 375 (381)
T cd01595 362 KGLGRQEAYELVKE 375 (381)
T ss_pred hCCCHhHHHHHHHH
Confidence 99999999999987
No 10
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=7.7e-36 Score=315.23 Aligned_cols=191 Identities=29% Similarity=0.437 Sum_probs=175.1
Q ss_pred HHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCC
Q psy14319 230 KALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRN 307 (486)
Q Consensus 230 ~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrN 307 (486)
+.+.+.+++.|||..+. ..+++.+||+++|++++++.++++|+|||+||++|++ ++|+.|+|+.+++||||||||||
T Consensus 192 ~~~~~~~a~~LGl~~~~-~~~~v~~rd~~~e~~~~la~~a~~L~kia~Di~~l~~~~~~el~e~~~~g~~GSS~MPhKrN 270 (431)
T PRK07380 192 PRVEAITCQKLGLKPDT-ASTQVISRDRHAEYVQTLALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRN 270 (431)
T ss_pred hhHHHHHHHHcCCCCCC-CCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecccCCCCCCCCcCCCCCCC
Confidence 56777899999999763 4567899999999999999999999999999999998 89999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319 308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP 387 (486)
Q Consensus 308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~ 387 (486)
|+.+|+++++|+.+.|....++.. ...|+|||+.+|.
T Consensus 271 P~~~E~i~~~a~~~~g~~~~~~~~-~~~~~eRD~~~~~------------------------------------------ 307 (431)
T PRK07380 271 PIRSERLSGLARVLRSYAVAALEN-VALWHERDISHSS------------------------------------------ 307 (431)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-chhhhccCchHHH------------------------------------------
Confidence 999999999999999999876544 5688898876542
Q ss_pred CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319 388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 467 (486)
Q Consensus 388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~ 467 (486)
.+|..+++++.++..++..+..++++|+||++||++|++...++++||++++.||++|+|
T Consensus 308 --------------------~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~ 367 (431)
T PRK07380 308 --------------------VERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMS 367 (431)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Confidence 147799999999999999999999999999999999999889999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhh
Q psy14319 468 RQVCHEKIRVLSHQAGA 484 (486)
Q Consensus 468 fr~Ah~~v~~~~~~a~~ 484 (486)
||+||++|+++++++.+
T Consensus 368 r~~Ah~~V~~~~~~a~~ 384 (431)
T PRK07380 368 REEAYRLVQKNAHTAWN 384 (431)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999976
No 11
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=6.5e-36 Score=318.11 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=151.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.+ +| ++|+.|+.++ +|+ .++|++|||..|..+| +++++||++
T Consensus 171 ~~~~~l~r~~~rL~~~~~~~~~~plG---gaA~~GT~~~--~dr----------~~~a~~LGf~~~~~n~~~a~~~rd~~ 235 (455)
T PRK04833 171 AYVEMLARDESRLQDALKRLDVSPLG---SGALAGTAYE--IDR----------EQLAGWLGFASATRNSLDSVSDRDHV 235 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC---ccccccCCCC--CCH----------HHHHHHhCCCCCCCCHHHHHhccHHH
Confidence 68999999999999999999853 55 6888999996 884 6999999999997665 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hh
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TA 153 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~ 153 (486)
+++++++++++++|+|||+|+++|++ || |+.+++ ++|||||||||||+.+|++|++++++.|...+++. .+
T Consensus 236 ~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g~~el~~~~---~~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~ 312 (455)
T PRK04833 236 LELLSDASISMVHLSRFAEDLIFFNSGEAGFVELSDRV---TSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKG 312 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeeCCCC---CCCcccCCCCCCChHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 99999999999999999999999996 66 887655 58999999999999999999999999999987553 56
Q ss_pred ccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319 154 STQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS 202 (486)
Q Consensus 154 ~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~ 202 (486)
+|.+|+||+++|+ ..+++++..+..++.++..++++++||+++|++
T Consensus 313 ~~~~~~rd~~~~~---~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 358 (455)
T PRK04833 313 LPLAYNKDMQEDK---EGLFDALDTWLDCLHMAALVLDGIQVKRPRCQE 358 (455)
T ss_pred ChHHHhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHhhCeECHHHHHH
Confidence 8889999998885 456666666666666666666666666666654
No 12
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=5.6e-35 Score=311.01 Aligned_cols=207 Identities=29% Similarity=0.431 Sum_probs=180.1
Q ss_pred CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319 206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284 (486)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss- 284 (486)
++|+.|+.. ..+..+..+.+.+++.|||..+. ..+++++||+++|++++++.++++|+|||+||++|++
T Consensus 189 lGgavGt~~---------a~~~~~~~i~~~~a~~LGl~~~~-~~~~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s~~ 258 (449)
T PRK08540 189 MTGAVGTQA---------AFGEKGIEIQKRVMEILGLKPVL-ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRT 258 (449)
T ss_pred ccccccchh---------hCCCccHHHHHHHHHHcCCCCCC-CcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777742 12334466778999999999863 3457899999999999999999999999999999998
Q ss_pred -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319 285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH 363 (486)
Q Consensus 285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
||||.++++++++|||||||||||+.+|+++++++++.|....++. ....+++||+.+|.
T Consensus 259 e~gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~~~rd~~~~~------------------ 319 (449)
T PRK08540 259 EIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNVEPALL-NNPLWDERDLTNSS------------------ 319 (449)
T ss_pred hhhhhhcccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHh-cchhhhccCCchhH------------------
Confidence 9999999999999999999999999999999999999999876554 35566777665431
Q ss_pred CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319 364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR 443 (486)
Q Consensus 364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~ 443 (486)
-+|..+++++.++.+++.++..++++|+||++||++
T Consensus 320 --------------------------------------------~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 355 (449)
T PRK08540 320 --------------------------------------------CERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRR 355 (449)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 146789999999999999999999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+++.+.+++++|++++.|++.|+|||+||++|+++++.+.++
T Consensus 356 ~l~~~~~~~~ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~ 397 (449)
T PRK08540 356 NLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHEE 397 (449)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 999889999999999999999999999999999999988654
No 13
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.4e-35 Score=310.11 Aligned_cols=184 Identities=30% Similarity=0.489 Sum_probs=165.9
Q ss_pred HHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCC
Q psy14319 230 KALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRN 307 (486)
Q Consensus 230 ~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrN 307 (486)
..+++++++.|||..+ +..+++++||+++|++++++.++++|+|||+||++|++ ||||.+|+..+++||||||||||
T Consensus 189 ~~~~~~~a~~LG~~~~-~~~~~~~~rD~~~e~~~~la~~~~~L~ria~Dl~~~s~~e~gel~e~~~~~~~GSS~MPqKrN 267 (387)
T cd01360 189 PEVEERVAEKLGLKPE-PISTQVIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRN 267 (387)
T ss_pred HHHHHHHHHHcCCCCC-CCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCCcCCCCCCCC
Confidence 4689999999999975 45567899999999999999999999999999999998 99999998778999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319 308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP 387 (486)
Q Consensus 308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~ 387 (486)
|+.+|+++++++.+.|....++. ....+++||+.+|.
T Consensus 268 P~~~E~i~~~a~~~~g~~~~~~~-~~~~~~~rd~~~~~------------------------------------------ 304 (387)
T cd01360 268 PILSENICGLARVIRSNVIPALE-NVALWHERDISHSS------------------------------------------ 304 (387)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh-hhHHhcCCCcchhH------------------------------------------
Confidence 99999999999999999875543 35566777664321
Q ss_pred CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319 388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 467 (486)
Q Consensus 388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~ 467 (486)
.+|..+++++.++..++..+..++++++||++||+++++.+.++++||++++.||++|+|
T Consensus 305 --------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~ 364 (387)
T cd01360 305 --------------------VERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMS 364 (387)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCC
Confidence 146799999999999999999999999999999999999888999999999999999999
Q ss_pred hHHHHHHHHH
Q psy14319 468 RQVCHEKIRV 477 (486)
Q Consensus 468 fr~Ah~~v~~ 477 (486)
||+||++|++
T Consensus 365 ~r~Ah~~V~~ 374 (387)
T cd01360 365 REEAYEIVQR 374 (387)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 14
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=8.9e-35 Score=308.42 Aligned_cols=206 Identities=33% Similarity=0.470 Sum_probs=181.3
Q ss_pred CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319 206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284 (486)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss- 284 (486)
++|+.||.. ..+..+..+++++++.|||+.+.+ .+++++||+++|++++++.++++|+|||+||++|++
T Consensus 183 lgGa~Gt~~---------~~~~~~~~~~~~~a~~LGl~~~~~-~~~~~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~~ 252 (435)
T TIGR00928 183 ISGAVGTHA---------AAYPLVEEVEERVTEFLGLKPVPI-STQIEPRDRHAELLDALALLATTLEKFAVDIRLLQRT 252 (435)
T ss_pred ccchhhhHh---------hccccHHHHHHHHHHhcCCCCCCC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677753 123334788899999999998753 347899999999999999999999999999999999
Q ss_pred -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319 285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH 363 (486)
Q Consensus 285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
|+|+.+|+..+++|||||||||||+.+|+++++++.+.|+.+.++.. ...++|||+.+|.
T Consensus 253 ~~~el~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~erd~~~~~------------------ 313 (435)
T TIGR00928 253 EHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALEN-VPLWHERDLTDSS------------------ 313 (435)
T ss_pred cccceecccCCCCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHHHHH-hhHHhccCChHHH------------------
Confidence 99999999888999999999999999999999999999999887654 4778888764321
Q ss_pred CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319 364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR 443 (486)
Q Consensus 364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~ 443 (486)
.+|..+++++.++..++.++..++++|+||++||++
T Consensus 314 --------------------------------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 349 (435)
T TIGR00928 314 --------------------------------------------VERIILPDSFILADIMLKTTLKVVKKLVVNPENILR 349 (435)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHH
Confidence 146689999999999999999999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q psy14319 444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGA 484 (486)
Q Consensus 444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~ 484 (486)
+++.++++++++++++.|++.|+|||+||++|+++++++.+
T Consensus 350 ~l~~~~~~~~a~~la~~L~~~g~g~~~Ah~~v~~~~~~a~~ 390 (435)
T TIGR00928 350 NLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAAE 390 (435)
T ss_pred HHHhccChHhHHHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999899999999999999998865
No 15
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=8.5e-35 Score=320.56 Aligned_cols=181 Identities=16% Similarity=0.177 Sum_probs=156.3
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVDV 80 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~~ 80 (486)
+|++.|.||.+|+.++.++++.. ++|| ++++|+.++ +|+ .++|++|||..|..|| |++++||+++
T Consensus 171 ~~~~~l~r~~~rL~~~~~~~~~~-plGg-ga~agt~~~--~~r----------~~~a~~LG~~~~~~n~~da~~~rd~~~ 236 (614)
T PRK12308 171 AYVEMFERDYSRLEDALTRLDTC-PLGS-GALAGTAYP--IDR----------EALAHNLGFRRATRNSLDSVSDRDHVM 236 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC-Cchh-ccccCCCCC--CCH----------HHHHHHhCCCCCcCCHHHHHcCcHHHH
Confidence 68999999999999999999853 4434 999999986 774 6899999999987665 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhc
Q psy14319 81 IVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAS 154 (486)
Q Consensus 81 e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~ 154 (486)
|++++++.++++|+|||+||++|++ |+ |+.+++ ++|||||||||||+.+|++|++++++.|.+.+++. .++
T Consensus 237 e~~~~l~~~~~~l~ria~Dl~~~ss~e~g~~el~~~~---~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~ 313 (614)
T PRK12308 237 ELMSVASISMLHLSRLAEDLIFYNSGESGFIELADTV---TSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKAL 313 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcCCEEeCccC---CCccccCcCccCCcHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 9999999999999999999999996 66 888766 47999999999999999999999999999987552 578
Q ss_pred cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319 155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS 202 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~ 202 (486)
|.+||||+++| |..+++++..+..++..+..++++|+||++||++
T Consensus 314 ~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 358 (614)
T PRK12308 314 PLAYNKDMQED---KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLE 358 (614)
T ss_pred chhhccchhhh---HHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHH
Confidence 89999999988 5777888887777777777777777777777765
No 16
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2e-34 Score=306.69 Aligned_cols=206 Identities=28% Similarity=0.387 Sum_probs=179.7
Q ss_pred CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319 206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284 (486)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss- 284 (486)
+.|+.|+.. +.|+.++.+++++++.|||..+ +..+++++||+++|++++++.++++|+|||+||++|++
T Consensus 188 ~~gavGt~a---------~~g~~~~~~~~~~a~~LGl~~~-~~~~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~ 257 (451)
T PRK06390 188 VLGPVGTGA---------ALGKDALDIQNRVMEILGIYSE-IGSTQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRP 257 (451)
T ss_pred cCChhcChh---------hCCCcHHHHHHHHHHHcCCCCC-CCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467899963 3466688999999999999986 55678899999999999999999999999999999999
Q ss_pred -hhhcccccc-CCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhc
Q psy14319 285 -MKEIEEPFE-STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQ 362 (486)
Q Consensus 285 -~~el~~~~~-~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (486)
+|++.|+++ ++++|||||||||||+.+|++++++..+.+... ........+++||+.+|..
T Consensus 258 e~g~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~~~~l~~-~~~~~~~~~~erd~~~~~~---------------- 320 (451)
T PRK06390 258 EIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLII-PEYEAGVTWHERDLTNSAL---------------- 320 (451)
T ss_pred ccchhhcccccCCCCCccCCCCCCCcHHHHHHHHHHHHHHHhHH-HHHHhhhHhhccCCcchHH----------------
Confidence 999998885 489999999999999999999999977777766 4445566778888765421
Q ss_pred cCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHH
Q psy14319 363 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQ 442 (486)
Q Consensus 363 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~ 442 (486)
+|..++..+.++..++..+..++++|+||++||+
T Consensus 321 ----------------------------------------------e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~ 354 (451)
T PRK06390 321 ----------------------------------------------ERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIR 354 (451)
T ss_pred ----------------------------------------------HHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHH
Confidence 3557788888899999999999999999999999
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 443 RHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 443 ~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
++++. .++++||.+++.|++.|++||+||++|+++++++.++
T Consensus 355 ~~l~~-~~~~~se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~ 396 (451)
T PRK06390 355 RNLES-DDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSN 396 (451)
T ss_pred HHHhc-cchhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 99998 6777899999999999999999999999999998654
No 17
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=5.6e-35 Score=305.48 Aligned_cols=217 Identities=25% Similarity=0.310 Sum_probs=185.2
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|.+.|.||.+|++++.++++.. ++|| ++.+|++++ ..| +++++++|||+.+..+| ++++||+++|
T Consensus 153 ~~~~~L~r~~~rL~~~~~~~~~~-~lgg-a~Gt~~~~~-~~~----------~~~~a~~LG~~~~~~~~-~~~~rD~~~e 218 (387)
T cd01360 153 LWYAEFKRHLERLKEARERILVG-KISG-AVGTYANLG-PEV----------EERVAEKLGLKPEPIST-QVIQRDRHAE 218 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh-ccch-HhhcCccCC-HHH----------HHHHHHHcCCCCCCCCC-cccCcHHHHH
Confidence 68999999999999999999853 4434 456777775 234 57999999999876555 7889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
+++++++++++|+|||+||++|++ |+||.+++..+++|||||||||||+.+|+++++++.+.|.... ++.+++.+|+
T Consensus 219 ~~~~la~~~~~L~ria~Dl~~~s~~e~gel~e~~~~~~~GSS~MPqKrNP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~~ 297 (387)
T cd01360 219 YLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIP-ALENVALWHE 297 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhhhHHhcC
Confidence 999999999999999999999996 9999999977889999999999999999999999999999874 5677899999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK 239 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~ 239 (486)
||+++|+.+|..+++++..+..++..+..++++++||++||++.. ....| ...++.+...+++.
T Consensus 298 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l--~~~~~--------------~~~ae~la~~L~~~ 361 (387)
T cd01360 298 RDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNL--NLTKG--------------LIFSQRVLLALVEK 361 (387)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH--HhccC--------------HHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999832 11012 22467888887774
Q ss_pred -cCCCCCcccc
Q psy14319 240 -AGFTSSHIIT 249 (486)
Q Consensus 240 -LGf~~a~~~~ 249 (486)
+||+.+|...
T Consensus 362 g~~~r~Ah~~V 372 (387)
T cd01360 362 GMSREEAYEIV 372 (387)
T ss_pred CCCHHHHHHHH
Confidence 8888876543
No 18
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=1.3e-33 Score=299.67 Aligned_cols=192 Identities=25% Similarity=0.278 Sum_probs=170.7
Q ss_pred cHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCC
Q psy14319 228 KVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYK 305 (486)
Q Consensus 228 ~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqK 305 (486)
.+..+++.+++.|||..+. ..++++||+++|++++++.++++|+|||+||++|++ ||||.+|+.++++||||||||
T Consensus 198 ~~~~~~~~~a~~LGf~~~~--~~~~~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~~e~gel~~~~~~~~~GSSiMPqK 275 (437)
T cd01597 198 QGLAVQEALAAELGLGVPA--IPWHTARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHK 275 (437)
T ss_pred cHHHHHHHHHHHcCCCCCC--CccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeecccCCCCCCCCCCCCC
Confidence 3467899999999999863 345799999999999999999999999999999999 999999987789999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccccc
Q psy14319 306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQ 385 (486)
Q Consensus 306 rNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~ 385 (486)
|||+.+|+++++|+++.|+.++++.. ...++|||+..|
T Consensus 276 ~NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~erd~~~~----------------------------------------- 313 (437)
T cd01597 276 RNPVGCELIVALARRVPGLAALLLDA-MVQEHERDAGAW----------------------------------------- 313 (437)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHh-chhhcccCCchh-----------------------------------------
Confidence 99999999999999999998776654 457777766432
Q ss_pred CCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcC
Q psy14319 386 MPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAG 465 (486)
Q Consensus 386 ~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g 465 (486)
..+|..+++++.++..++.++..++++++||++||+++++.+.++++||.+++.|++ |
T Consensus 314 ---------------------~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~-~ 371 (437)
T cd01597 314 ---------------------HAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAP-K 371 (437)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHH-h
Confidence 114678999999999999999999999999999999999988899999999999998 5
Q ss_pred CChHHHHHHHHHHHHHhhhc
Q psy14319 466 GDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 466 ~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+|||+||++|+++++++.++
T Consensus 372 i~~~~Ah~~v~~~~~~a~~~ 391 (437)
T cd01597 372 LGRQEAHDLVYEACMRAVEE 391 (437)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987654
No 19
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=3e-34 Score=308.20 Aligned_cols=192 Identities=15% Similarity=0.109 Sum_probs=161.5
Q ss_pred CCCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh--hccccccCCCCc
Q psy14319 224 GDGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIG 298 (486)
Q Consensus 224 ~~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~--el~~~~~~~~~G 298 (486)
+.|+..+.+++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++ || |+.++| ++|
T Consensus 207 g~gt~~~~~r~~~a~~LGf~~~~~ns~~a~~~rD~~~e~~~~la~~~~~L~Ria~Dl~~~ss~e~g~iel~e~~---~~g 283 (502)
T PRK06705 207 LSTTSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITVARPY---VQI 283 (502)
T ss_pred hccCCchHHHHHHHHHcCCCCCcCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeecCCC---CCc
Confidence 45556789999999999999876 44456799999999999999999999999999999999 88 666554 589
Q ss_pred CcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCC
Q psy14319 299 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPY 378 (486)
Q Consensus 299 SSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~ 378 (486)
||||||||||+.+|++|++++++.|.+++++.. +.++++++.. |+
T Consensus 284 SSiMPqKrNP~~~E~ir~~a~~~~g~~~~~l~~-~~~~~~~~~~-------------------------d~--------- 328 (502)
T PRK06705 284 SSIMPQKRNPVSIEHARAITSSALGEAFTVFQM-IHNTPFGDIV-------------------------DT--------- 328 (502)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-------------------------hh---------
Confidence 999999999999999999999999999888755 4555555432 21
Q ss_pred CccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHH---HHHHHHHhchhCCeeCHHHHHHHHhccCChhHHH
Q psy14319 379 FAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTD---CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATE 455 (486)
Q Consensus 379 ~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~---~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~ 455 (486)
.|..+++++..++ .++..+..++++++||++||+++++. ++++||
T Consensus 329 ------------------------------q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~--g~~~At 376 (502)
T PRK06705 329 ------------------------------EDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYK--HAITIT 376 (502)
T ss_pred ------------------------------HhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHhc--CchHHH
Confidence 1233444444444 44999999999999999999999976 789999
Q ss_pred HHHHHHHHc-CCChHHHHHHHHHHHHHhhhc
Q psy14319 456 NIIMAMVKA-GGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 456 ~~~~~L~~~-g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
++|+.||++ |+|||+||++|+++++.+.++
T Consensus 377 ~la~~Lv~~~Gl~fr~Ah~iV~~~v~~a~~~ 407 (502)
T PRK06705 377 DFADVLTKNYGIPFRHAHHAASVIANMSLEQ 407 (502)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999999998 999999999999999998653
No 20
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=2.1e-34 Score=300.83 Aligned_cols=216 Identities=31% Similarity=0.376 Sum_probs=180.3
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccc--cchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSR--KVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r--~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~ 79 (486)
+|.+.|.||.+|++++.++++.. ++|| .+.+|+.++. +.| .+++|++|||..+. ..+++++||++
T Consensus 151 ~~~~~L~r~~~rL~~~~~~~~~~-~lGg-a~G~g~~~~~~~~~~----------~~~~a~~LGl~~~~-~~~~~~~rd~~ 217 (381)
T cd01595 151 VWAAELLRHLERLEEARERVLVG-GISG-AVGTHASLGPKGPEV----------EERVAEKLGLKVPP-ITTQIEPRDRI 217 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhchhh-hccc-HhhhHhhcCCcHHHH----------HHHHHHHcCCCCCC-CCCCcccchHH
Confidence 68999999999999999999753 5534 5556665521 244 46899999996544 33457899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQW 157 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~ 157 (486)
+|++++++.++++|+|||+|+++|++ |+||.+|+.++++|||||||||||+.+|+++++++++.|+...++. .++++
T Consensus 218 ~e~~~~l~~~~~~l~ria~Dl~~~~s~e~gev~~~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~ 296 (381)
T cd01595 218 AELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALE-NLVQW 296 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccCCCCCCccCCCcCCcHHHHHHHHHHHHHHHHHHHHHH-hhhHh
Confidence 99999999999999999999999997 9999999877899999999999999999999999999999987554 45999
Q ss_pred ccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHH
Q psy14319 158 MERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVT 237 (486)
Q Consensus 158 ~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA 237 (486)
||||+++|+.+|..+++++..+..++.++..++++|+||+++|++.. ...-|+ ..++.+...+.
T Consensus 297 ~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~g~--------------~~ae~~~~~L~ 360 (381)
T cd01595 297 HERDLSDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNL--DLTWGL--------------ILSEAVMMALA 360 (381)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHH--HhccCH--------------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999832 111122 22466677766
Q ss_pred HH-cCCCCCcc
Q psy14319 238 KK-AGFTSSHI 247 (486)
Q Consensus 238 ~~-LGf~~a~~ 247 (486)
+. +||+.+|.
T Consensus 361 ~~g~g~~~Ah~ 371 (381)
T cd01595 361 KKGLGRQEAYE 371 (381)
T ss_pred HhCCCHhHHHH
Confidence 65 88887754
No 21
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=1.2e-33 Score=300.92 Aligned_cols=205 Identities=21% Similarity=0.214 Sum_probs=180.4
Q ss_pred CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319 206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284 (486)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss- 284 (486)
++|..|+.. ..+..+..+.+++++.|||..+. ..|+++||+++|++++|+.++++|+|||+||++|++
T Consensus 194 lGgavGt~~---------~~~~~~~~v~~~~a~~LGl~~~~--~~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~~~ 262 (452)
T PRK09053 194 FGGAAGTLA---------SLGEQALPVAQALAAELQLALPA--LPWHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQT 262 (452)
T ss_pred ccchhhccc---------ccccchHHHHHHHHHHcCCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566677742 22334567789999999999753 235689999999999999999999999999999998
Q ss_pred -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319 285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH 363 (486)
Q Consensus 285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
|||+.+|+..+++|||||||||||+.+|+++++|+++.|+..+++ .+...++|||...|.
T Consensus 263 e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~-~~~~~~~erd~~~~~------------------ 323 (452)
T PRK09053 263 EVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLF-AAMPQEHERALGGWH------------------ 323 (452)
T ss_pred ccchhhccccCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HhChhhhcccCCccH------------------
Confidence 999999988899999999999999999999999999999999885 557789998875431
Q ss_pred CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319 364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR 443 (486)
Q Consensus 364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~ 443 (486)
.+|..+++++.++..++..+..++++|+||++||++
T Consensus 324 --------------------------------------------~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~ 359 (452)
T PRK09053 324 --------------------------------------------AEWDTLPELACLAAGALAQMAQIVEGLEVDAARMRA 359 (452)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHH
Confidence 146789999999999999999999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+++.+.++++||.+++.|++. +++++||++|+++++++.++
T Consensus 360 ~l~~s~~~~~ae~~~~~La~~-lgr~~Ah~iV~~~~~~a~~~ 400 (452)
T PRK09053 360 NLDLTHGLILAEAVMLALADR-IGRLDAHHLVEQASKRAVAE 400 (452)
T ss_pred HHHhcCCHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 89999999999999988654
No 22
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=8.7e-34 Score=299.95 Aligned_cols=214 Identities=26% Similarity=0.334 Sum_probs=182.3
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
.|++.|.||.+|++++.+++... +|+| | .|+.++ +|+ .+.++++++|||..+..+| ++.+||++++
T Consensus 159 ~~~~~l~r~~~rL~~~~~~~~~~-~lgG--A-vGT~~~--~~~-------~~~~~~a~~LGl~~~~~~~-~v~~RD~~~e 224 (435)
T PRK07492 159 RFYAEFARNRERLVAAREEIATC-AISG--A-VGTFAN--IDP-------RVEEHVAKKLGLKPEPVST-QVIPRDRHAM 224 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc-cCcc--c-ccCCcc--CCh-------HHHHHHHHHhCCCCCCccc-cccccHHHHH
Confidence 58999999999999999999743 5534 4 477775 664 3357999999999876554 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
+++++++++++|+|||+||++|++ |+|+.|+++++++|||+|||||||+.+|+++++++.+.|.... ++.+++.+||
T Consensus 225 ~~~~la~~~~~L~ria~Di~~l~~~e~~El~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~~~~~~-~~~~~~~~~e 303 (435)
T PRK07492 225 FFATLGVIASSIERLAIEIRHLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVVP-AMENVALWHE 303 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhcchhhc
Confidence 999999999999999999999995 9999999988999999999999999999999999999998764 5567899999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK 239 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~ 239 (486)
||++.|..+|..+|+++..+..++..+..++++|+||++||++.. ....|. ..++.+...+++.
T Consensus 304 RD~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl--~~~~g~--------------i~ae~~~~~L~~~ 367 (435)
T PRK07492 304 RDISHSSVERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNL--NKFGGL--------------VHSQRVLLALTQA 367 (435)
T ss_pred cCChHHHHhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH--hhcCCh--------------hHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999832 111121 2357777777764
Q ss_pred -cCCCCCc
Q psy14319 240 -AGFTSSH 246 (486)
Q Consensus 240 -LGf~~a~ 246 (486)
+||+.+|
T Consensus 368 g~~r~~Ah 375 (435)
T PRK07492 368 GVSREDAY 375 (435)
T ss_pred CCCHHHHH
Confidence 7777764
No 23
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=6.4e-34 Score=300.61 Aligned_cols=214 Identities=26% Similarity=0.312 Sum_probs=182.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
.|++.|.||.+|++++.+++... ++ ++|+ |+.++ +|+ .+..+++++|||..+..+| ++.+||+++|
T Consensus 156 ~~~~~l~r~~~RL~~~~~~~~~~-~l--~GAv-Gt~~~--~~~-------~~~~~~a~~LGl~~~~~~~-~v~~rd~~~e 221 (431)
T PRK07380 156 GWLAETLRNRERLVRLREDIAVG-QI--SGAV-GTYAN--TDP-------RVEAITCQKLGLKPDTAST-QVISRDRHAE 221 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-Cc--chhh-cCccc--CCh-------hHHHHHHHHcCCCCCCCCC-CccCcHHHHH
Confidence 68999999999999999998742 45 2555 77665 664 2345899999999887654 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
++++++.++++|+|||+||++|++ |+|+.|+|+++++|||+|||||||+.+|+++++|+.+.|.+.. ++.+++.+||
T Consensus 222 ~~~~la~~a~~L~kia~Di~~l~~~~~~el~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~e 300 (431)
T PRK07380 222 YVQTLALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYAVA-ALENVALWHE 300 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCceeecccCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhchhhhc
Confidence 999999999999999999999996 8999999988999999999999999999999999999999885 5667899999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHH-
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTK- 238 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~- 238 (486)
||+++|..+|..+++++..+..++..+..++++|+||++||++... ...|. ...+.+...+++
T Consensus 301 RD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~--~~~g~--------------~~ae~~~~~Lv~~ 364 (431)
T PRK07380 301 RDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMN--IYGGV--------------VFSQRVLLALVEK 364 (431)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--hcCCh--------------HHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998321 11122 235777777766
Q ss_pred HcCCCCCc
Q psy14319 239 KAGFTSSH 246 (486)
Q Consensus 239 ~LGf~~a~ 246 (486)
.+||+.+|
T Consensus 365 gl~r~~Ah 372 (431)
T PRK07380 365 GMSREEAY 372 (431)
T ss_pred CCCHHHHH
Confidence 47777764
No 24
>KOG1316|consensus
Probab=100.00 E-value=2.5e-34 Score=283.79 Aligned_cols=192 Identities=18% Similarity=0.129 Sum_probs=170.0
Q ss_pred CCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCC
Q psy14319 226 GDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAM 302 (486)
Q Consensus 226 g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiM 302 (486)
|.....+++.+++.|||..+. |...+++.||+++|++.+.++++.+|+|+|+|+.+|++ ||.+... ++..+|||+|
T Consensus 206 Gnpl~iDR~~la~~LgF~~v~~NSm~AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~lS-DaySTGSSlM 284 (464)
T KOG1316|consen 206 GNPLGIDREFLAEELGFEGVIMNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTLS-DAYSTGSSLM 284 (464)
T ss_pred CCCCCccHHHHHHhcCCcccchhhhhccccchhHHHHHHHHHHHHHHHHHHhhHhheeeccccCceeec-cccccCcccC
Confidence 445678899999999999766 78899999999999999999999999999999999999 8888764 6778999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccc
Q psy14319 303 AYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPI 382 (486)
Q Consensus 303 PqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~ 382 (486)
||||||+.+|.+|+++++++|.+.+++.+.. ++|..+
T Consensus 285 PQKKNpDslELlRgksgrV~gdl~g~lmt~K-----------------------------------------G~PstY-- 321 (464)
T KOG1316|consen 285 PQKKNPDSLELLRGKSGRVFGDLTGLLMTLK-----------------------------------------GLPSTY-- 321 (464)
T ss_pred CCCCCCCHHHHhccccceehhhhHHHHHHhc-----------------------------------------CCcccc--
Confidence 9999999999999999999999999987631 112111
Q ss_pred cccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHH
Q psy14319 383 LNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMV 462 (486)
Q Consensus 383 ~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~ 462 (486)
|.+.|+++ +++.+++.+...++.+...++.+++||+++|.+.+.. -+.|+++|++||
T Consensus 322 ---------------nkDlQeDK-----ep~Fds~~tv~~~l~v~tgv~stltvn~e~m~~aLt~---dmlATdlA~YLV 378 (464)
T KOG1316|consen 322 ---------------NKDLQEDK-----EPLFDSSKTVSDSLQVATGVISTLTVNQENMEKALTP---DMLATDLAYYLV 378 (464)
T ss_pred ---------------ccchhhhh-----hHHHhhHHHHHHHHHHHHHHhhheeECHHHHhhccCc---hhhHhHHHHHHH
Confidence 23448887 6899999999999999999999999999999999754 489999999999
Q ss_pred HcCCChHHHHHHHHHHHHHhhh
Q psy14319 463 KAGGDRQVCHEKIRVLSHQAGA 484 (486)
Q Consensus 463 ~~g~~fr~Ah~~v~~~~~~a~~ 484 (486)
++|+|||++||+++.+|+.|.+
T Consensus 379 rKGvPFRqtHhisG~~V~~ae~ 400 (464)
T KOG1316|consen 379 RKGVPFRQTHHISGKAVRMAEE 400 (464)
T ss_pred HcCCCchhhhhhhHHHHHHHHH
Confidence 9999999999999999999865
No 25
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.7e-34 Score=308.55 Aligned_cols=208 Identities=14% Similarity=0.166 Sum_probs=172.4
Q ss_pred ChhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccH
Q psy14319 1 MKFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKV 78 (486)
Q Consensus 1 ~~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~ 78 (486)
++|++.|.||.+|+.++.++++. ++| +++++|++|+ +|| +++|++|||+.|. |+||++++||+
T Consensus 177 ~~~~~~l~r~~~rL~~~~~r~~~~plG---gaag~gt~~~--~~r----------~~~a~~LGf~~~~~ns~~a~~~rD~ 241 (502)
T PRK06705 177 LAIYDTMQRDLERMKKTYKLLNQSPMG---AAALSTTSFP--IKR----------ERVADLLGFTNVIENSYDAVAGADY 241 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCch---hhhhccCCch--HHH----------HHHHHHcCCCCCcCCHHHHHhccHH
Confidence 36999999999999999999984 355 6889999997 884 7999999999997 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319 79 DVIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS 154 (486)
Q Consensus 79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~ 154 (486)
++|+++++++++++|+|||+||++|++ |+ |++|+|. +|||||||||||+++|++|++++++.|.+.+++ ..+
T Consensus 242 ~~e~~~~la~~~~~L~Ria~Dl~~~ss~e~g~iel~e~~~---~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~l-~~~ 317 (502)
T PRK06705 242 LLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITVARPYV---QISSIMPQKRNPVSIEHARAITSSALGEAFTVF-QMI 317 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeecCCCC---CccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 999999999999999999999999996 77 8888774 699999999999999999999999999998744 555
Q ss_pred cccccCCCchhhHhhh---chHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHH
Q psy14319 155 TQWMERTLDDSANRRL---TLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKA 231 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~---~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~ 231 (486)
.+++++|..+. +|. .+++++..+..++..+..++++++||++||++.. ...+..+++
T Consensus 318 ~~~~~~~~~d~--q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~------------------~~g~~~At~ 377 (502)
T PRK06705 318 HNTPFGDIVDT--EDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRS------------------YKHAITITD 377 (502)
T ss_pred cCCcchhhhhh--HhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHH------------------hcCchHHHH
Confidence 55656665553 333 3445555555669999999999999999999832 112235788
Q ss_pred HHHHHHHH--cCCCCCcc
Q psy14319 232 LDRLVTKK--AGFTSSHI 247 (486)
Q Consensus 232 i~~~lA~~--LGf~~a~~ 247 (486)
+.+.+++. +||+.+|.
T Consensus 378 la~~Lv~~~Gl~fr~Ah~ 395 (502)
T PRK06705 378 FADVLTKNYGIPFRHAHH 395 (502)
T ss_pred HHHHHHHhcCCCHHHHHH
Confidence 88888774 88887754
No 26
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=9.3e-34 Score=300.58 Aligned_cols=214 Identities=25% Similarity=0.309 Sum_probs=178.3
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|++.|.||.+|++++.++++.. +++| ...++..++ ++ +.++++++|||+.+..+| ++++||+++|
T Consensus 156 ~~~~~l~r~~~RL~~~~~~~~~~-~lgG-AvGt~a~~~--~~---------v~~~~a~~LGl~~~~~~~-~v~~RD~~~e 221 (442)
T PRK08470 156 IWYDEIKRHLKALEHTMEVISVG-KISG-AMGNFAHAP--LE---------LEELVCEELGLKPAPVSN-QVIQRDRYAR 221 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-cCcc-hhcccccCC--hH---------HHHHHHHHcCCCCCCCCC-CccCcHHHHH
Confidence 68999999999999999998742 4423 222333333 22 246999999999776555 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
++++++.++++|+|||+||++|++ |+|+.|+|+++++|||||||||||+.+|+++++++.+.|.... ++.+++.+||
T Consensus 222 ~~~~La~~a~~L~ria~Di~~l~~~E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~-~~~~~~~~~e 300 (442)
T PRK08470 222 LASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATP-ALENVALWHE 300 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHHhchHhhc
Confidence 999999999999999999999995 9999999988999999999999999999999999999999764 5677899999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK 239 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~ 239 (486)
||+++|..+|..+|+++..+..++..+..++++|+||++||++.. ....|. ..++.+...+++.
T Consensus 301 RD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl--~~~~g~--------------~~ae~l~~~L~~~ 364 (442)
T PRK08470 301 RDISHSSVERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNL--NLTGGL--------------VFSQRVLLELPKK 364 (442)
T ss_pred cCCchhHHHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH--HhccCh--------------HHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999832 111122 2357777777664
Q ss_pred -cCCCCCc
Q psy14319 240 -AGFTSSH 246 (486)
Q Consensus 240 -LGf~~a~ 246 (486)
+||+.+|
T Consensus 365 G~~~~~Ah 372 (442)
T PRK08470 365 GVSREDAY 372 (442)
T ss_pred CCCHHHHH
Confidence 7777764
No 27
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=1e-33 Score=300.28 Aligned_cols=218 Identities=25% Similarity=0.336 Sum_probs=182.9
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|.+.|.||.+|+.++.++++.. +++| + .|+.++ +|+. +.....+++++|||+.|.++| ++++||++++
T Consensus 159 ~~~~~l~r~~~rL~~~~~~~~~~-~lgG--a-~Gt~~~--~~~~----~~~~~~~~a~~LGl~~~~~~~-~~~~rD~~~e 227 (435)
T TIGR00928 159 LWADEMKRQLERLLQAKERIKVG-GISG--A-VGTHAA--AYPL----VEEVEERVTEFLGLKPVPIST-QIEPRDRHAE 227 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh-cccc--h-hhhHhh--cccc----HHHHHHHHHHhcCCCCCCCCc-cccccHHHHH
Confidence 68999999999999999999753 5534 3 666664 5531 023346899999999998777 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
++++++.++++|+|||+||++|++ |+|+.+|+..+++|||||||||||+.+|+++++|+++.|+.+.+ ...++++||
T Consensus 228 ~~~~l~~la~~L~ria~Dl~l~s~~~~~el~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~-~~~~~~~~e 306 (435)
T TIGR00928 228 LLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPA-LENVPLWHE 306 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHH-HHHhhHHhc
Confidence 999999999999999999999996 99999999778899999999999999999999999999999864 456799999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHH-
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTK- 238 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~- 238 (486)
||+++|..+|..+++++..+..++..+..++++|+||++||++....++ |. -..+.+...+++
T Consensus 307 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~--~~--------------~~a~~la~~L~~~ 370 (435)
T TIGR00928 307 RDLTDSSVERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTL--GL--------------IASERVLIALVER 370 (435)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcc--Ch--------------HhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998321111 11 134666677665
Q ss_pred HcCCCCCcc
Q psy14319 239 KAGFTSSHI 247 (486)
Q Consensus 239 ~LGf~~a~~ 247 (486)
.+||+.+|.
T Consensus 371 g~g~~~Ah~ 379 (435)
T TIGR00928 371 GMGREEAYE 379 (435)
T ss_pred CCChhhHHH
Confidence 588887653
No 28
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.6e-33 Score=300.59 Aligned_cols=193 Identities=19% Similarity=0.186 Sum_probs=167.5
Q ss_pred CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319 225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi 301 (486)
.|+..+.+++++++.|||..+. |..+|+++||++++++++++.++++|+|||+||++|++ |||+.+| +..++||||
T Consensus 203 ~gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei~~p-~~~~~gSSi 281 (459)
T PRK00855 203 AGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSQEFGFVELP-DAFSTGSSI 281 (459)
T ss_pred cCCCCCcCHHHHHHHcCCCCCCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeEeCC-CCCCCCcCC
Confidence 3445568889999999999765 56778999999999999999999999999999999999 8999998 456799999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhh--hhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCC
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATAS--TQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYF 379 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 379 (486)
|||||||+.+|+++++|+++.|+..+++.... ..+++| |+
T Consensus 282 MPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~r----------------------------D~---------- 323 (459)
T PRK00855 282 MPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAYNR----------------------------DL---------- 323 (459)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCchHHhhh----------------------------hh----------
Confidence 99999999999999999999999988875321 122333 32
Q ss_pred ccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHH
Q psy14319 380 APILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIM 459 (486)
Q Consensus 380 ~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~ 459 (486)
++.|..+++++..+..++..+..++++++||+++|+++++ .++++++++++
T Consensus 324 ---------------------------~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~at~la~ 374 (459)
T PRK00855 324 ---------------------------QEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAG--KGFSTATDLAD 374 (459)
T ss_pred ---------------------------hhhHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cchhHHHHHHH
Confidence 1135678999999999999999999999999999999997 46889999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 460 AMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 460 ~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
.||++|+|||+||++|+++++++.++
T Consensus 375 ~Lv~~gi~~r~Ah~~v~~~~~~a~~~ 400 (459)
T PRK00855 375 YLVRKGVPFREAHEIVGKAVREAEER 400 (459)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998653
No 29
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=8e-34 Score=324.60 Aligned_cols=214 Identities=15% Similarity=0.162 Sum_probs=187.8
Q ss_pred ChhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccH
Q psy14319 1 MKFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKV 78 (486)
Q Consensus 1 ~~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~ 78 (486)
++|+++|.||.+|+.++.++++.+ +| +++++|++++ +|+ +++|++|||+.|..|| +++++||+
T Consensus 577 ~~~~~~l~r~~~rl~~~~~r~~~~plG---~aag~gt~~~--~~~----------~~~a~~LGf~~~~~n~~da~~~rd~ 641 (887)
T PRK02186 577 LAVDGALARETHALFALFEHIDVCPLG---AGAGGGTTFP--IDP----------EFVARLLGFEQPAPNSLDAVASRDG 641 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCcc---cccccCCCCC--CCH----------HHHHHHcCCCCCccCHHHHHcccHH
Confidence 379999999999999999999853 55 6888999996 774 6899999999987666 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14319 79 DVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ 156 (486)
Q Consensus 79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~ 156 (486)
++|+++++++++++|+|||+||++|++ |+|+.+|+ ++++|||||||||||+++|++|++++++.|+..+++......
T Consensus 642 ~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i~~~~-~~~~gSSiMPqKrNP~~~E~ir~~~~~~~g~~~~~~~~~~~~ 720 (887)
T PRK02186 642 VLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSLPD-ALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKT 720 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEECCC-ccccccCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHccC
Confidence 999999999999999999999999996 99999998 678999999999999999999999999999998766566677
Q ss_pred cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHH
Q psy14319 157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLV 236 (486)
Q Consensus 157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~l 236 (486)
++++|...|+.+|..+++++..+..++..+..++++|+||++||++.. ...+..++.+.+.+
T Consensus 721 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~------------------~~~~~~at~la~~L 782 (887)
T PRK02186 721 PFSNSFEAGSPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHL------------------EDGGVSATAVAESL 782 (887)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHH------------------hcCcchHHHHHHHH
Confidence 888888878888999999999999999999999999999999999832 11222568888887
Q ss_pred HH--HcCCCCCccc
Q psy14319 237 TK--KAGFTSSHII 248 (486)
Q Consensus 237 A~--~LGf~~a~~~ 248 (486)
++ .+||+.+|.+
T Consensus 783 ~~~~g~~fr~Ah~~ 796 (887)
T PRK02186 783 VVRRSISFRSAHTQ 796 (887)
T ss_pred HHhCCCCHHHHHHH
Confidence 76 5888887543
No 30
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=299.76 Aligned_cols=214 Identities=24% Similarity=0.334 Sum_probs=179.4
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCc---ee-ecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCccccccccc
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNS---SH-IITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRK 77 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~---~~-a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD 77 (486)
+|++.|.||.+|+.++.++++.. ++|| ++ ++.|+.+ +++ ++++++|||+.+..+| ++++||
T Consensus 165 ~~~~~l~r~~~rL~~~~~~~~~~-~lGgavGt~~a~~~~~~--~i~-----------~~~a~~LGl~~~~~~~-~~~~rd 229 (449)
T PRK08540 165 IWASEIQRHLERLEQLKPRVCVG-QMTGAVGTQAAFGEKGI--EIQ-----------KRVMEILGLKPVLISN-QVIQRD 229 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhhec-cccccccchhhCCCccH--HHH-----------HHHHHHcCCCCCCCcC-CccccH
Confidence 68999999999999999999843 4434 11 2222222 244 5899999999987666 689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14319 78 VDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST 155 (486)
Q Consensus 78 ~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~ 155 (486)
++++++++++.++++|+|||+||++|++ |+||.++++++++|||||||||||+.+|+++++|+++.|.... ++.+++
T Consensus 230 ~~~e~~~~l~~~a~~l~kia~Dl~l~s~~e~gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~-~~~~~~ 308 (449)
T PRK08540 230 RHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNVEP-ALLNNP 308 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHhcch
Confidence 9999999999999999999999999995 9999999888899999999999999999999999999999875 556789
Q ss_pred ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319 156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL 235 (486)
Q Consensus 156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~ 235 (486)
.+|+||+++|..+|..+++++..+..++..+..++++|+||++||++.... ..|. ..++.+...
T Consensus 309 ~~~~rd~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~--~~~~--------------~~ae~la~~ 372 (449)
T PRK08540 309 LWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLEL--TKGL--------------IMAEAVMIE 372 (449)
T ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHH--hcCH--------------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999983211 1122 245777777
Q ss_pred HHH-HcCCCCCcc
Q psy14319 236 VTK-KAGFTSSHI 247 (486)
Q Consensus 236 lA~-~LGf~~a~~ 247 (486)
+.+ .+||+.+|.
T Consensus 373 L~~~glg~~~Ah~ 385 (449)
T PRK08540 373 LAKRGMGRQEAHE 385 (449)
T ss_pred HHHcCCCHHHHHH
Confidence 666 588887643
No 31
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=3.5e-33 Score=297.65 Aligned_cols=190 Identities=18% Similarity=0.163 Sum_probs=163.9
Q ss_pred HHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319 230 KALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR 306 (486)
Q Consensus 230 ~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr 306 (486)
+.+++++++.|||+.+. |..+++++||++++++++++.++++|+|||+||++|++ ||||.+| +..++|||||||||
T Consensus 204 ~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~lp-~~~~~GSSiMP~K~ 282 (455)
T TIGR00838 204 PIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVELP-DEFSSGSSIMPQKK 282 (455)
T ss_pred CCCHHHHHHHcCCCCCcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCC-CCCCCccCCCCCCc
Confidence 56678899999999865 45567999999999999999999999999999999999 9999987 45579999999999
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319 307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM 386 (486)
Q Consensus 307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~ 386 (486)
||+.+|+++++++++.|...+++......++ ++++|+
T Consensus 283 NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~--------------------------~~~rd~----------------- 319 (455)
T TIGR00838 283 NPDVAELIRGKTGRVQGNLTGMLMTLKALPL--------------------------AYNRDL----------------- 319 (455)
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHhcCCh--------------------------Hhhhhh-----------------
Confidence 9999999999999999999988865321110 122222
Q ss_pred CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q psy14319 387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGG 466 (486)
Q Consensus 387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~ 466 (486)
| +.|..+++++..+..++..+..++++|+||+++|+++++. +++++|.+++.||++|+
T Consensus 320 ---------------~-----~~~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~~~~~--~~~~at~la~~Lv~~g~ 377 (455)
T TIGR00838 320 ---------------Q-----EDKEPLFDALKTVELSLEMATGMLDTITVNKERMEEAASA--GFSNATELADYLVRKGV 377 (455)
T ss_pred ---------------H-----hhHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc--CccHHHHHHHHHHHcCC
Confidence 1 1356899999999999999999999999999999999764 57899999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhc
Q psy14319 467 DRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 467 ~fr~Ah~~v~~~~~~a~~~ 485 (486)
|||+||++|+++++++.++
T Consensus 378 ~~r~Ah~~v~~~~~~a~~~ 396 (455)
T TIGR00838 378 PFREAHHIVGELVATAIER 396 (455)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998764
No 32
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=3e-33 Score=296.41 Aligned_cols=223 Identities=48% Similarity=0.637 Sum_probs=184.5
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCC---ceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFN---SSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKV 78 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~---~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~ 78 (486)
+|++.|.||.+|+.++.+++.. .|++ |+++..|++++ +|+. ....+.++++++|||..+.++++++.+||+
T Consensus 158 ~~~~~L~r~~~RL~~~~~~~~~-~~~~GavGt~a~~~~~~~--~dr~---~~~~v~~~~a~~LGl~~~~~~~~~v~~rD~ 231 (436)
T cd03302 158 LWIQDLLMDLRNLERLRDDLRF-RGVKGTTGTQASFLDLFE--GDHD---KVEALDELVTKKAGFKKVYPVTGQTYSRKV 231 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcCcChhhhhHHHHhcCC--chHH---HHHHHHHHHHHHcCCCCCCCchhhhhccHH
Confidence 6899999999999999998853 2332 24555566775 5531 001234689999999998444458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy14319 79 DVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWM 158 (486)
Q Consensus 79 ~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~ 158 (486)
++|++++++.++++|+|||+||++|++++||.+|+..+++|||||||||||+.+|+++++|+.+.|....++..+..+++
T Consensus 232 ~~e~~~~la~~a~~L~riA~Dl~l~~s~~el~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~g~~~~~~~~~~~~~~ 311 (436)
T cd03302 232 DIDVLNALSSLGATAHKIATDIRLLANLKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWF 311 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCceecccccCCCCCcccCCCccCcHHHHHHHHHHHHHHhhHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999778999999999999999999999999999999986657788999
Q ss_pred cCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHH
Q psy14319 159 ERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTK 238 (486)
Q Consensus 159 erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~ 238 (486)
|||+..|..+|..+++++..+..++..+..++++|+||++||++..... .|. ...+.+...+++
T Consensus 312 Erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~--~g~--------------~~se~~~~~L~~ 375 (436)
T cd03302 312 ERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQE--LPF--------------MATENIIMAAVK 375 (436)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhc--cCh--------------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999843111 111 234567777766
Q ss_pred H-cCCCCCc
Q psy14319 239 K-AGFTSSH 246 (486)
Q Consensus 239 ~-LGf~~a~ 246 (486)
. +||+.+|
T Consensus 376 ~g~~~~~Ah 384 (436)
T cd03302 376 AGGDRQDAH 384 (436)
T ss_pred cCCCHHHHH
Confidence 4 7777764
No 33
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=3.5e-33 Score=319.39 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=170.6
Q ss_pred CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319 225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi 301 (486)
.|+..+..++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++ |||+.+|+ ++++||||
T Consensus 608 ~gt~~~~~~~~~a~~LGf~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i~~~~-~~~~gSSi 686 (887)
T PRK02186 608 GGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSLPD-ALTGGSSM 686 (887)
T ss_pred cCCCCCCCHHHHHHHcCCCCCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEECCC-ccccccCC
Confidence 3444455678899999999765 55678899999999999999999999999999999999 99999986 67899999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|++|++++++.|++++++......+++++...
T Consensus 687 MPqKrNP~~~E~ir~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------------------------------- 728 (887)
T PRK02186 687 LPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEA-------------------------------------- 728 (887)
T ss_pred CCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHccCCcccccch--------------------------------------
Confidence 999999999999999999999999988866555555543211
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
+ +++|..+++++.++..++..+..++++|+||++||+++++.+.+ +||++|++|
T Consensus 729 -------------------~-----~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~--~at~la~~L 782 (887)
T PRK02186 729 -------------------G-----SPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGV--SATAVAESL 782 (887)
T ss_pred -------------------h-----hhhHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCcc--hHHHHHHHH
Confidence 1 12467899999999999999999999999999999999987654 999999999
Q ss_pred HHc-CCChHHHHHHHHHHHHHhhhc
Q psy14319 462 VKA-GGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 462 ~~~-g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
|++ |+|||+||++|+++++.|.++
T Consensus 783 ~~~~g~~fr~Ah~~v~~~v~~~~~~ 807 (887)
T PRK02186 783 VVRRSISFRSAHTQVGQAIRQSLDQ 807 (887)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 985 999999999999999998765
No 34
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=7.2e-33 Score=294.08 Aligned_cols=217 Identities=23% Similarity=0.213 Sum_probs=181.7
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|++.|.||.+|+.++.++++.+ ++|| ++.+|++++ +|. ....++++++|||..+..+| +++||++++
T Consensus 161 ~~~~~l~r~~~rL~~~~~~~~~~-~lGg-a~Gtg~~~~--~~~------~~~~~~~a~~LGf~~~~~~~--~~~rd~~~e 228 (437)
T cd01597 161 VWLSELLRHRERLDELRPRVLVV-QFGG-AAGTLASLG--DQG------LAVQEALAAELGLGVPAIPW--HTARDRIAE 228 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh-cccc-ccccccccC--CcH------HHHHHHHHHHcCCCCCCCcc--ccCcHHHHH
Confidence 68999999999999999999843 4434 777888886 331 12256999999999987655 579999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
++++++.++++|+|||+||++|++ |+||.+|+.++++|||||||||||+.+|++|++|+++.|..+. ++..+.++||
T Consensus 229 ~~~~l~~~a~~l~rla~Dl~l~s~~e~gel~~~~~~~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~e 307 (437)
T cd01597 229 LASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAAL-LLDAMVQEHE 307 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccceeecccCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHHhchhhcc
Confidence 999999999999999999999996 9999999866899999999999999999999999999999775 5556779999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK 239 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~ 239 (486)
||+..|..+|..+++++..+..++..+..++++++||++||++...... |+ ..++.+...+++.
T Consensus 308 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~--~~--------------~~ae~l~~~l~~~ 371 (437)
T cd01597 308 RDAGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTG--GL--------------ILSEAVMMALAPK 371 (437)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcc--Ch--------------HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998321111 11 1245566666667
Q ss_pred cCCCCCcc
Q psy14319 240 AGFTSSHI 247 (486)
Q Consensus 240 LGf~~a~~ 247 (486)
+||+.+|.
T Consensus 372 i~~~~Ah~ 379 (437)
T cd01597 372 LGRQEAHD 379 (437)
T ss_pred cCHHHHHH
Confidence 88887653
No 35
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=1.6e-32 Score=291.39 Aligned_cols=195 Identities=20% Similarity=0.192 Sum_probs=164.9
Q ss_pred CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319 225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi 301 (486)
.|+..+.+++++++.|||..+. |...++++||++++++++++.++++++|||+|+++|++ ||||.+| +..++||||
T Consensus 179 ~gt~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~a~~l~ria~Dl~l~~~~e~gev~lp-e~~~~GSS~ 257 (435)
T cd01359 179 AGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELP-DAYSTGSSI 257 (435)
T ss_pred cCCCCCCCHHHHHHHcCCCCCccCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCC-CCCCCcccc
Confidence 3444567889999999998754 33355689999999999999999999999999999999 9999865 344599999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++++.+.|...++...... +. .++++|+
T Consensus 258 MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~------~~--------------------~~~~~d~------------ 299 (435)
T cd01359 258 MPQKKNPDVLELIRGKAGRVIGALAGLLTTLKG------LP--------------------LAYNKDL------------ 299 (435)
T ss_pred CCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcC------CC--------------------CccchhH------------
Confidence 999999999999999999999999888665311 00 1222332
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
..+|..+++++..+..++..+..++++|+||+++|+++++ .+++++|++++.|
T Consensus 300 -------------------------~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~l~~~l 352 (435)
T cd01359 300 -------------------------QEDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAE--AGFSTATDLADYL 352 (435)
T ss_pred -------------------------HHhhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHh--cCccHHHHHHHHH
Confidence 1246789999999999999999999999999999999997 5688999999999
Q ss_pred HH-cCCChHHHHHHHHHHHHHhhhc
Q psy14319 462 VK-AGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 462 ~~-~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
++ +|+|||+||++|+++++++.++
T Consensus 353 ~~~~g~~~r~Ah~~v~~~~~~a~~~ 377 (435)
T cd01359 353 VREKGVPFREAHHIVGRAVRLAEEK 377 (435)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 98 7999999999999999998654
No 36
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=8.3e-33 Score=289.71 Aligned_cols=205 Identities=14% Similarity=0.063 Sum_probs=174.2
Q ss_pred hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccH-
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKV- 78 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~- 78 (486)
+|+++|.||.+|+.++.++++. ++| +++.+|++++ +|+ +++|++|||..+. |+.+++.+||+
T Consensus 165 a~a~~L~rd~~RL~~~~~r~~~~pLG---aga~~Gt~~~--idr----------~~~A~lLGf~~~~~n~~~a~~~~~~~ 229 (434)
T PRK06389 165 YIKSILYHHINNLDSFLMDLREMPYG---YGSGYGSPSS--VKF----------NQMSELLGMEKNIKNPVYSSSLYIKT 229 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCch--hhH----------HHHHHHhCCCCCCCCCchhhhccchH
Confidence 7999999999999999999995 466 8999999996 884 7899999999986 45677778777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhc
Q psy14319 79 DVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAS 154 (486)
Q Consensus 79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~ 154 (486)
+++++++++.++++|+|||+|+++|++ +.++++++ ++|||||||||||+.+|++|++|+++.|.+++.+. .+.
T Consensus 230 ~~e~~~~la~la~~LsRiA~Dl~l~ss~g~ielpd~~---~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~n~ 306 (434)
T PRK06389 230 IENISYLISSLAVDLSRICQDIIIYYENGIITIPDEF---TTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNK 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCC---CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999997 66666655 57999999999999999999999999999987553 367
Q ss_pred cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHH
Q psy14319 155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDR 234 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~ 234 (486)
+..|++|+|+.+ ..+++++..+..++.++..++++++||++| ++.. ..+..++++.+
T Consensus 307 ~~~y~~D~q~~~---~~~~~~~~~~~~~l~l~~~~i~~l~~~~~~-~~a~-------------------~~~~~ATdlA~ 363 (434)
T PRK06389 307 TTGYHRDFQIVK---DSTISFINNFERILLGLPDLLYNIKFEITN-EKNI-------------------KNSVYATYNAW 363 (434)
T ss_pred cchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCeECHHH-Hhhc-------------------cCCCcHHHHHH
Confidence 889999999875 688999999999999999999999999999 4411 11123677777
Q ss_pred HH-HHHcCCCCCcc
Q psy14319 235 LV-TKKAGFTSSHI 247 (486)
Q Consensus 235 ~l-A~~LGf~~a~~ 247 (486)
.+ .+.++|+.+|.
T Consensus 364 ~lv~~GipFR~AH~ 377 (434)
T PRK06389 364 LAFKNGMDWKSAYA 377 (434)
T ss_pred HHHHcCCCHHHHHH
Confidence 75 56888888754
No 37
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=1.5e-32 Score=292.96 Aligned_cols=208 Identities=18% Similarity=0.202 Sum_probs=178.9
Q ss_pred hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~ 79 (486)
+|.+.|.||.+|+.++.++++. ++| .++++|+.++ +|+ ++++++|||..+. |+|+++++||++
T Consensus 169 ~~~~~L~r~~~rL~~~~~~~~~~plG---g~a~aGt~~~--~~r----------~~~a~~LG~~~~~~n~~~a~~~rd~~ 233 (455)
T TIGR00838 169 AYAEMLLRDYERLQDALKRVNVSPLG---SGALAGTGFP--IDR----------EYLAELLGFDAVTENSLDAVSDRDFI 233 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc---hhcccCCCCC--CCH----------HHHHHHcCCCCCcCCHHHHHhCcHHH
Confidence 6899999999999999999985 355 4588999885 774 6899999999986 478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhcc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAST 155 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~ 155 (486)
++++++++.++++|+|||+||++|++ |+||.+|. ..++|||||||||||+.+|+++++|+++.|...+++. .+++
T Consensus 234 ~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~lp~-~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~ 312 (455)
T TIGR00838 234 LELLFVAALIMVHLSRFAEDLILWSTGEFGFVELPD-EFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALP 312 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCC-CCCCccCCCCCCcCChHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 99999999999999999999999996 99998874 4478999999999999999999999999999987554 4678
Q ss_pred ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319 156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL 235 (486)
Q Consensus 156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~ 235 (486)
.+||||+++. +..+++++..+..++..+..++++|+||+++|++.. ...+..++.+...
T Consensus 313 ~~~~rd~~~~---~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~~~------------------~~~~~~at~la~~ 371 (455)
T TIGR00838 313 LAYNRDLQED---KEPLFDALKTVELSLEMATGMLDTITVNKERMEEAA------------------SAGFSNATELADY 371 (455)
T ss_pred hHhhhhhHhh---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH------------------HcCccHHHHHHHH
Confidence 8999999874 678999999999999999999999999999999832 1122346777777
Q ss_pred HHH-HcCCCCCc
Q psy14319 236 VTK-KAGFTSSH 246 (486)
Q Consensus 236 lA~-~LGf~~a~ 246 (486)
+++ .+||+.+|
T Consensus 372 Lv~~g~~~r~Ah 383 (455)
T TIGR00838 372 LVRKGVPFREAH 383 (455)
T ss_pred HHHcCCCHHHHH
Confidence 665 47777664
No 38
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.97 E-value=5.6e-32 Score=288.66 Aligned_cols=208 Identities=19% Similarity=0.217 Sum_probs=178.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~ 79 (486)
+|.+.|.||.+|+.++.++++. ++| .++++|+.++ +|+ .+++++|||..+. ++.+++++||++
T Consensus 173 ~~~~~L~r~~~rL~~~~~~~~~~plG---gaag~gt~~~--~~r----------~~~a~~LG~~~~~~n~~~a~~~rd~~ 237 (459)
T PRK00855 173 AYAEMLARDLERLRDARKRVNRSPLG---SAALAGTTFP--IDR----------ERTAELLGFDGVTENSLDAVSDRDFA 237 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcc---hhhhcCCCCC--cCH----------HHHHHHcCCCCCCCCHHHHHHccHHH
Confidence 6899999999999999999985 355 5788899996 774 6899999999886 456888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhcc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAST 155 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~ 155 (486)
++++++++.++++|+|||+||++|++ |+|+.+|. ..++|||||||||||+.+|+++++|+++.|....++. ..++
T Consensus 238 ~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei~~p~-~~~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~ 316 (459)
T PRK00855 238 LEFLSAASLLMVHLSRLAEELILWSSQEFGFVELPD-AFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLP 316 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeEeCCC-CCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCch
Confidence 99999999999999999999999996 99999985 4568999999999999999999999999999987553 4567
Q ss_pred ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319 156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL 235 (486)
Q Consensus 156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~ 235 (486)
.+|+||+++. |..+++++..+..++..+..++++|+||+++|++.. ...+..++.+...
T Consensus 317 ~~~~rD~~~~---~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l------------------~~~~~~at~la~~ 375 (459)
T PRK00855 317 LAYNRDLQED---KEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAA------------------GKGFSTATDLADY 375 (459)
T ss_pred HHhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH------------------HcchhHHHHHHHH
Confidence 8899999884 578999999999999999999999999999999843 1223346777777
Q ss_pred HHH-HcCCCCCc
Q psy14319 236 VTK-KAGFTSSH 246 (486)
Q Consensus 236 lA~-~LGf~~a~ 246 (486)
+.+ .+||+.+|
T Consensus 376 Lv~~gi~~r~Ah 387 (459)
T PRK00855 376 LVRKGVPFREAH 387 (459)
T ss_pred HHHcCCCHHHHH
Confidence 655 46677654
No 39
>PRK09285 adenylosuccinate lyase; Provisional
Probab=99.97 E-value=3.1e-31 Score=281.67 Aligned_cols=190 Identities=18% Similarity=0.120 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCCc
Q psy14319 229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNP 308 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrNP 308 (486)
++.+.+.+++.|||..+ +..+++.+||+++|++++++.++++|+|||+||++|++++|+.|+++++++|||||||||||
T Consensus 226 ~~~v~~~~~~~LGL~~~-~~~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll~~~~e~~e~~~~~~~GSS~MPhKrNP 304 (456)
T PRK09285 226 WHAFSREFVESLGLTWN-PYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGYISLGYFKQKTKAGEIGSSTMPHKVNP 304 (456)
T ss_pred HHHHHHHHHHHhCCCCC-CCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhccCCCCCCCCCCCCCCcCc
Confidence 56788888889999873 45556899999999999999999999999999999999989999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCC
Q psy14319 309 MRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPT 388 (486)
Q Consensus 309 ~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~ 388 (486)
+.+|+++++++.+.+....++......|||||+++|..
T Consensus 305 v~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~~~~------------------------------------------ 342 (456)
T PRK09285 305 IDFENSEGNLGLANALLEHLAAKLPISRWQRDLTDSTV------------------------------------------ 342 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccHHhhCCcCchhhh------------------------------------------
Confidence 99999999999999888777765437899999876642
Q ss_pred CCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCCh
Q psy14319 389 LLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 468 (486)
Q Consensus 389 ~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~f 468 (486)
+|.. ++++..+..++..+..++++|+||++||++|++.+++ ++||.++..|++ +++
T Consensus 343 --------------------e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl~~~~~-~~sE~~~~~l~~--~gr 398 (456)
T PRK09285 343 --------------------LRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDLDANWE-VLAEPIQTVMRR--YGI 398 (456)
T ss_pred --------------------hcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCc-chHHHHHHHHHH--hCh
Confidence 2456 8999999999999999999999999999999999999 899988888887 889
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy14319 469 QVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 469 r~Ah~~v~~~~~~a~~~ 485 (486)
.+||++|+++++++.++
T Consensus 399 ~~A~~~v~~~~~~~~~~ 415 (456)
T PRK09285 399 ENPYEKLKELTRGKRIT 415 (456)
T ss_pred HhHHHHHHHHHHHHHhc
Confidence 99999999999988664
No 40
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.97 E-value=1.3e-31 Score=285.72 Aligned_cols=192 Identities=17% Similarity=0.153 Sum_probs=165.0
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCC-CCC-CcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFN-SSH-IITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~-~~~-~~~~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.+ ++|| +|+ |+.++ +|+.. -..+..++|++|||+ ++. ++.|++++||++
T Consensus 203 ~~~~~l~R~~~RL~~~~~r~~~~-pLGg-~Av-GT~~~--~~~~~---~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~ 274 (464)
T PRK00485 203 GYAAQLEHGIERIEAALPHLYEL-ALGG-TAV-GTGLN--AHPGF---AERVAEELAELTGLPFVTAPNKFEALAAHDAL 274 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccCC-ccc-cCCcc--CChhH---HHHHHHHHHHHhCCCCccCcCHHHHHhccHHH
Confidence 69999999999999999999853 4423 454 88886 77521 012234799999999 443 456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS 154 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~ 154 (486)
+|+++++++++++|+|||+||++|++ |+||.+|+ +++|||||||||||+++|++|++|+++.|....++..+.
T Consensus 275 ~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~lp~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~ 352 (464)
T PRK00485 275 VEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLPE--NEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGS 352 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEcCC--CCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 99999999999999999999999992 99999997 479999999999999999999999999999998776778
Q ss_pred cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
.++||+|...|..+|..++++......++.+...++++|+||++||++.
T Consensus 353 ~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~ 401 (464)
T PRK00485 353 QGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKEL 401 (464)
T ss_pred cCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 8999999999988899888888888888888889999999999999984
No 41
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.97 E-value=1.5e-31 Score=284.81 Aligned_cols=189 Identities=21% Similarity=0.166 Sum_probs=164.8
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|++.|.||.+|+.++.+++... ++||+ +.++.+++ |+.-.+.+++|++|||..|..+|+ .+||+++|
T Consensus 170 ~~~~~l~r~~~RL~~~~~~~~~~-~lGga-vGt~~~~~--------~~~~~v~~~~a~~LGl~~~~~~~~--~~rD~~~e 237 (452)
T PRK09053 170 GWLDALLRHRQRLAALRPRALVL-QFGGA-AGTLASLG--------EQALPVAQALAAELQLALPALPWH--TQRDRIAE 237 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc-cccch-hhcccccc--------cchHHHHHHHHHHcCCCCCCCCcc--cccHHHHH
Confidence 68999999999999999999842 44343 33333332 111122469999999999887775 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
++++++.++++|+|||+||++|++ |+|+.+|+..+++|||||||||||+.+|+++++|+++.|+...+ +.+++++||
T Consensus 238 ~~~~la~la~~L~kia~Di~ll~~~e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~-~~~~~~~~e 316 (452)
T PRK09053 238 FASALGLLAGTLGKIARDVSLLMQTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATL-FAAMPQEHE 316 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhccccCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHH-HHhChhhhc
Confidence 999999999999999999999995 99999988778999999999999999999999999999999874 677899999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
||...|..+|..+++++..+..++..+..++++|+||++||++.
T Consensus 317 rd~~~~~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~ 360 (452)
T PRK09053 317 RALGGWHAEWDTLPELACLAAGALAQMAQIVEGLEVDAARMRAN 360 (452)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHH
Confidence 99999999999999999999999999999999999999999983
No 42
>PRK06390 adenylosuccinate lyase; Provisional
Probab=99.97 E-value=1.5e-31 Score=284.63 Aligned_cols=213 Identities=24% Similarity=0.304 Sum_probs=173.8
Q ss_pred hhhhhHhccHHHHHHHHHHHhhh-c-CCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKK-A-GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~-~-g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.. + |--|+++..|+.++ .+ .+++|++|||..+..+| ++++||++
T Consensus 164 ~~~~~l~r~~~RL~~~~~r~~~~~~~gavGt~a~~g~~~~--~~----------~~~~a~~LGl~~~~~~~-~~~~rD~~ 230 (451)
T PRK06390 164 VYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALGKDAL--DI----------QNRVMEILGIYSEIGST-QIVNRDRY 230 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCChhcChhhCCCcHH--HH----------HHHHHHHcCCCCCCCcc-ccccchHH
Confidence 69999999999999999988721 1 11124555665543 33 46999999999976554 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccc-cCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFE-STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ 156 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~ 156 (486)
++++++++.++++|+|||+||++|++ |+++.|++. ++++|||||||||||+.+|.+++++..+.+... ........
T Consensus 231 ~e~~~~l~~la~~l~kia~Di~l~ss~e~g~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~~~~l~~-~~~~~~~~ 309 (451)
T PRK06390 231 IEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLII-PEYEAGVT 309 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCCCCCccCCCCCCCcHHHHHHHHHHHHHHHhHH-HHHHhhhH
Confidence 99999999999999999999999996 999988775 489999999999999999999999988877766 45556678
Q ss_pred cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCc-HHHHHHH
Q psy14319 157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDK-VKALDRL 235 (486)
Q Consensus 157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~-~~~i~~~ 235 (486)
+|+||+++|+.+|..++..+..+..++..+..++++++||++||++.... .|.. .+.+...
T Consensus 310 ~~erd~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~------------------~~~~~se~la~~ 371 (451)
T PRK06390 310 WHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLES------------------DDSIMSESIVRA 371 (451)
T ss_pred hhccCCcchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhc------------------cchhhHHHHHHH
Confidence 89999999999999899999999999999999999999999999983211 1122 3457676
Q ss_pred HHH-HcCCCCCc
Q psy14319 236 VTK-KAGFTSSH 246 (486)
Q Consensus 236 lA~-~LGf~~a~ 246 (486)
+++ .+||+.+|
T Consensus 372 L~~~G~~~~~Ah 383 (451)
T PRK06390 372 LTLSGMPRQDAH 383 (451)
T ss_pred HHHcCCCHHHHH
Confidence 666 36676654
No 43
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.97 E-value=7.5e-31 Score=253.65 Aligned_cols=159 Identities=41% Similarity=0.647 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcc
Q psy14319 264 VLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTL 341 (486)
Q Consensus 264 ~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~ 341 (486)
+++.++++++|+|+||++|++ |||+.+|++.+++|||||||||||+.+|+++++++.+.|+..+++... ..++|||+
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~erd~ 100 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALENV-PLWHERDL 100 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHHHh-HHHhccCC
Confidence 899999999999999999999 999999998899999999999999999999999999999999988775 78888887
Q ss_pred cccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHH
Q psy14319 342 DDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTD 421 (486)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~ 421 (486)
..|. .+|..+++++..+.
T Consensus 101 ~~~~--------------------------------------------------------------~~~~~l~~~~~~~~ 118 (216)
T PRK08937 101 SHSS--------------------------------------------------------------AERIALPDAFLALD 118 (216)
T ss_pred chhH--------------------------------------------------------------HHhhHHHHHHHHHH
Confidence 5431 13568999999999
Q ss_pred HHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 422 CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 422 ~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
.++..+..++++++||++||+++++.+.++++++.+++.|++.|+|||+||++|+++++.+.++
T Consensus 119 ~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~~~~~~ 182 (216)
T PRK08937 119 YILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKN 182 (216)
T ss_pred HHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987653
No 44
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.97 E-value=2.6e-31 Score=272.04 Aligned_cols=181 Identities=27% Similarity=0.244 Sum_probs=161.8
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCC-CCCCCcccccccccHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGF-NSSHIITGQTYSRKVDV 80 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf-~~~~~~~~av~~RD~~~ 80 (486)
+|.+.|.||.+|+.++.++++.. ++ |++|+.|+.+..++| ++++|++||| ..+.++|+++++||+++
T Consensus 142 ~~~~~l~r~~~rL~~~~~~~~~~-~l-G~gA~g~~~~~~~~~----------~~~~a~~LG~~~~~~~~~~a~~~rd~~~ 209 (325)
T cd01334 142 AWAAELERDLERLEEALKRLNVL-PL-GGGAVGTGANAPPID----------RERVAELLGFFGPAPNSTQAVSDRDFLV 209 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CC-cHhHHhCcCCCCcch----------HHHHHHHhcCcCcCcCHHHHHhCcHHHH
Confidence 68999999999999999999743 44 368888887721266 5799999999 55567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy14319 81 IVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWM 158 (486)
Q Consensus 81 e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~ 158 (486)
|++++++.++++++|||+|+++|++ |+|+.+|+.. ++|||||||||||+.+|+++++++++.|.... +...+..++
T Consensus 210 e~~~~l~~~~~~l~ria~Dl~~~~~~e~gev~~~~~~-~~gSS~MP~KrNP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~ 287 (325)
T cd01334 210 ELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAK-QPGSSIMPQKVNPVILELVRGLAGRVIGNLAA-LLEALKGGP 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEECCCCC-CCCcccCCCCCCCHHHHHHHHHHHHHhhHHHH-HHHHHhcCc
Confidence 9999999999999999999999996 9999999854 89999999999999999999999999999986 445677888
Q ss_pred cCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccC
Q psy14319 159 ERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVY 196 (486)
Q Consensus 159 erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn 196 (486)
++|..+|+.+|..+++++..+..++..+..++++|+||
T Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 288 LEDNVDSPVEREALPDSFDLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence 88999999999999999999999999999999999986
No 45
>PRK06389 argininosuccinate lyase; Provisional
Probab=99.97 E-value=1.8e-30 Score=272.24 Aligned_cols=191 Identities=17% Similarity=0.107 Sum_probs=153.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCCCc-cccccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcC
Q psy14319 224 GDGDKVKALDRLVTKKAGFTSSH-IITGQTYSR-KVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSA 301 (486)
Q Consensus 224 ~~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~r-d~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSi 301 (486)
+.|+..+.+++++++.|||..+. |....+.++ |.+++++++++.++.+|+|||+|+++|++.++++.| +..++||||
T Consensus 194 ~~Gt~~~idr~~~A~lLGf~~~~~n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~Dl~l~ss~g~ielp-d~~~~GSSi 272 (434)
T PRK06389 194 GYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYENGIITIP-DEFTTGSSL 272 (434)
T ss_pred hhcCCchhhHHHHHHHhCCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEec-CCCCCCCCC
Confidence 34556677899999999999755 333333454 558899999999999999999999999996666654 455799999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++|+++.|.++++.... .+++ .||++|+
T Consensus 273 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~------~n~~--------------------~~y~~D~------------ 314 (434)
T PRK06389 273 MPNKRNPDYLELFQGIAAESISVLSFIAQSE------LNKT--------------------TGYHRDF------------ 314 (434)
T ss_pred CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHH------cCCc--------------------chhhHHH------------
Confidence 9999999999999999999999888776542 2222 1455554
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
|+.. ..+.+++..+..++.++..++++++||+++ ++.+ .. +.+|+++|+.+
T Consensus 315 --------------------q~~~-----~~~~~~~~~~~~~l~l~~~~i~~l~~~~~~-~~a~--~~-~~~ATdlA~~l 365 (434)
T PRK06389 315 --------------------QIVK-----DSTISFINNFERILLGLPDLLYNIKFEITN-EKNI--KN-SVYATYNAWLA 365 (434)
T ss_pred --------------------HHHH-----HHHHHHHHHHHHHHHHHHHHHHhCeECHHH-Hhhc--cC-CCcHHHHHHHH
Confidence 4443 478889999999999999999999999999 4443 22 34599999999
Q ss_pred HHcCCChHHHHHHHHHHHHHh
Q psy14319 462 VKAGGDRQVCHEKIRVLSHQA 482 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~~~a 482 (486)
|++|+|||+||++|+++|+.+
T Consensus 366 v~~GipFR~AH~~Vg~~V~~~ 386 (434)
T PRK06389 366 FKNGMDWKSAYAYIGNKIREG 386 (434)
T ss_pred HHcCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875
No 46
>KOG2700|consensus
Probab=99.97 E-value=1.6e-30 Score=264.94 Aligned_cols=235 Identities=49% Similarity=0.684 Sum_probs=187.2
Q ss_pred HHHHHcCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHH
Q psy14319 56 SIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERL 135 (486)
Q Consensus 56 ~~a~~LGf~~~~~~~~av~~RD~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~i 135 (486)
.+++++||.++..-+.|+.+||...+.+..+++++++..|+|.|++++..|.|+.|||.++++|||.|||||||+.+|.+
T Consensus 222 Lv~k~~gf~~~~~~TGQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~~~ev~epFea~q~gsSaMp~krNpm~~E~i 301 (481)
T KOG2700|consen 222 LVTKELGFVPMYIVTGQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAKFAEVEEPFEAHQIGSSAMPYKRNPMRCERI 301 (481)
T ss_pred HHHHHhCCCccccccCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCCchhHHH
Confidence 45566666666554556667777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccc
Q psy14319 136 CSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHH 215 (486)
Q Consensus 136 r~~a~~v~g~~~~~l~~~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~ 215 (486)
.++++.+.+..+..+..+...|+||++.+|.++|..+|++|..+++.|....++++|+.|.|.+|++
T Consensus 302 tslar~l~~~v~~al~~~~~qw~Ertl~dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r------------- 368 (481)
T KOG2700|consen 302 TSLARHLRPYVTQALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIER------------- 368 (481)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHhhcccccccccceechHHHHHHHHHHHHHHHHHhhcccccHHHHH-------------
Confidence 9999999999988776678899999999999999999999999999999999999999999999987
Q ss_pred cccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCC
Q psy14319 216 TTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFEST 295 (486)
Q Consensus 216 ~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~ 295 (486)
++.+.+||-...| +.+++.--+.
T Consensus 369 -------------------~i~~e~~~~~~en-------------i~mAL~~~g~------------------------- 391 (481)
T KOG2700|consen 369 -------------------NIRDELPFMVLEN-------------IIMALVKAGL------------------------- 391 (481)
T ss_pred -------------------HHHhhhhHHHHHH-------------HHHHHHHhcc-------------------------
Confidence 1333344433211 1112211111
Q ss_pred CCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhcc
Q psy14319 296 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRA 375 (486)
Q Consensus 296 ~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~ 375 (486)
| |.-|...++.++.- ....|+++|+.||++|+++.
T Consensus 392 ---s---------------rq~ahe~I~~L~~~---------------------------a~~~v~~e~g~~~~ie~~k~ 426 (481)
T KOG2700|consen 392 ---S---------------RQEAHEGIRKLSHQ---------------------------AAQVVKQEGGDNDLIERAKE 426 (481)
T ss_pred ---c---------------HHHHHHHHHHHHHH---------------------------HHHHHHHhcCCcHHHHHhcc
Confidence 1 11111112211100 01246888999999999999
Q ss_pred CCCCccccccCCCCCCCccccCCchhHhhh
Q psy14319 376 DPYFAPILNQMPTLLDPKSFYGRAPEQQRL 405 (486)
Q Consensus 376 ~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~ 405 (486)
+|||+||+++++..+||+.|.||+++|...
T Consensus 427 ~~~~~~v~ee~~~ll~p~~f~gra~dQie~ 456 (481)
T KOG2700|consen 427 DPTFKPVKEELDSLLDPLNFTGRAVDQIEK 456 (481)
T ss_pred cccccchHHHHHhhccchhcccccHHHHHH
Confidence 999999999999999999999999999876
No 47
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=99.97 E-value=1.4e-30 Score=274.18 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCCc
Q psy14319 229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNP 308 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrNP 308 (486)
+..+.+.+++.|||..+ +..+++++||+++|++++++.++++++|||+||++|++-+|+.|+++++++|||||||||||
T Consensus 204 ~~~~~~~~a~~LgL~~~-~~~~~v~~rD~~~e~~~~La~la~~L~kia~Di~ll~s~ge~~e~~~~~~~GSS~MPhKrNP 282 (425)
T cd01598 204 WRKFSEFFVTSLGLTWN-PYTTQIEPHDYIAELFDALARINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNP 282 (425)
T ss_pred HHHHHHHHHHHhCcCCC-CcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeecCCCCCCCcCCCCCCcCc
Confidence 47889999999999975 44556899999999999999999999999999999999888888888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCC
Q psy14319 309 MRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPT 388 (486)
Q Consensus 309 ~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~ 388 (486)
+.+|+++++++.+.+....+.......++|||+.+|..
T Consensus 283 v~~E~i~~~a~~a~~~~~~~~~~~~~~~~eRD~~~~~~------------------------------------------ 320 (425)
T cd01598 283 IDFENAEGNLGLSNALLNHLSAKLPISRLQRDLTDSTV------------------------------------------ 320 (425)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccchhh------------------------------------------
Confidence 99999999999998888766655436889999876532
Q ss_pred CCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCCh
Q psy14319 389 LLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 468 (486)
Q Consensus 389 ~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~f 468 (486)
+|.. ++++..+..++..+..++++|+||++||++|++.+++ ++||.++..|++ +++
T Consensus 321 --------------------e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~-i~sE~~~~~l~~--~gr 376 (425)
T cd01598 321 --------------------LRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWE-VLAEPIQTVMRR--YGI 376 (425)
T ss_pred --------------------hccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcC-HHHHHHHHHHHh--cCh
Confidence 2456 8999999999999999999999999999999999998 788877776665 788
Q ss_pred HHHHHHHHHHHH
Q psy14319 469 QVCHEKIRVLSH 480 (486)
Q Consensus 469 r~Ah~~v~~~~~ 480 (486)
++||++|+++++
T Consensus 377 ~~Ah~~V~~~~~ 388 (425)
T cd01598 377 PNPYEKLKDLTR 388 (425)
T ss_pred HhHHHHHHHHhC
Confidence 999999999987
No 48
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.97 E-value=1.4e-30 Score=278.07 Aligned_cols=189 Identities=20% Similarity=0.204 Sum_probs=158.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCC-C-CCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNS-S-HIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~-~-~~~~~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.+ ++| .+|+ |+.++ +|+.. .....+++|++|||.. + .++.|++++||++
T Consensus 205 ~~~~~l~r~~~RL~~~~~~~~~~-plG-g~Av-GT~~~--i~~~~---~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~ 276 (472)
T PRK12273 205 AYAVALAEDRKRLYRAAELLREV-NLG-ATAI-GTGLN--APPGY---IELVVEKLAEITGLPLVPAEDLIEATQDTGAF 276 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCC-ccce-eCCCC--CChhH---HHHHHHHHHHHcCCCcccCcCHHHHHhCcHHH
Confidence 69999999999999999999853 442 4567 88886 77521 0133457899999995 3 4567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--h
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--T 152 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~ 152 (486)
+|++++++.++++|+|||+||++|++ |+||.+|+ +++|||||||||||+.+|++|++|+++.|+..+++. .
T Consensus 277 ~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~lp~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~ 354 (472)
T PRK12273 277 VEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPA--VQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAE 354 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEECCC--CCCcCCCCCcccCcHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999993 89999985 789999999999999999999999999999987553 4
Q ss_pred hccccccCCCchhhHhhhchHHHHHHHHHHHHHHH-HhhhccccCHHhhhhh
Q psy14319 153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQ-NVLEGLVVYPKETYSI 203 (486)
Q Consensus 153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~-~vl~~l~vn~erm~~~ 203 (486)
+++.+|+++.+... ..+++++..+..++..+. .++++|+||++||++.
T Consensus 355 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~ 403 (472)
T PRK12273 355 AGQLELNVMEPVIA---YNLFESISILTNACRTLREKCIDGITANEERCREY 403 (472)
T ss_pred cCCchhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 57778777654432 445667999999999999 5999999999999983
No 49
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=99.97 E-value=8.7e-31 Score=278.07 Aligned_cols=208 Identities=19% Similarity=0.209 Sum_probs=175.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~ 79 (486)
+|.+.|.||.+|+.++.++++. ++| .++.+|+.++ +|+ +++|++|||..+..+| +++.+||++
T Consensus 149 ~~~~~l~r~~~rL~~~~~~~~~~~lG---gaag~gt~~~--~~~----------~~~a~~LG~~~~~~~~~~a~~~rd~~ 213 (435)
T cd01359 149 AYAEMLERDLERLADAYKRVNVSPLG---AGALAGTTFP--IDR----------ERTAELLGFDGPTENSLDAVSDRDFV 213 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCcc---cccccCCCCC--CCH----------HHHHHHcCCCCCccCHHHHHhcchHH
Confidence 6899999999999999999984 355 5777899996 774 6899999999888777 888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh--cc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA--ST 155 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~--~~ 155 (486)
++++++++.++++++|||+|+++|++ |+||..|. ...+|||||||||||+.+|+++++++++.|....++... .+
T Consensus 214 ~e~~~~l~~~a~~l~ria~Dl~l~~~~e~gev~lpe-~~~~GSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~ 292 (435)
T cd01359 214 LEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELPD-AYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLP 292 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCCC-CCCCccccCCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcCCC
Confidence 99999999999999999999999996 99987543 234799999999999999999999999999998755432 27
Q ss_pred ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319 156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL 235 (486)
Q Consensus 156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~ 235 (486)
.+|+||.+. +|..+++++..+..++..+..++++|+||+++|++.. ...+...+.+...
T Consensus 293 ~~~~~d~~~---~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l------------------~~~~~~a~~l~~~ 351 (435)
T cd01359 293 LAYNKDLQE---DKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAA------------------EAGFSTATDLADY 351 (435)
T ss_pred CccchhHHH---hhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHH------------------hcCccHHHHHHHH
Confidence 889999876 5789999999999999999999999999999999832 1222345777777
Q ss_pred HHH--HcCCCCCc
Q psy14319 236 VTK--KAGFTSSH 246 (486)
Q Consensus 236 lA~--~LGf~~a~ 246 (486)
+++ .+||+.+|
T Consensus 352 l~~~~g~~~r~Ah 364 (435)
T cd01359 352 LVREKGVPFREAH 364 (435)
T ss_pred HHHhcCCCHHHHH
Confidence 766 47777654
No 50
>KOG2700|consensus
Probab=99.97 E-value=3.2e-29 Score=255.42 Aligned_cols=215 Identities=60% Similarity=0.795 Sum_probs=201.9
Q ss_pred hcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14319 204 RIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283 (486)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~s 283 (486)
++++|..|+-. ...+.+.++.++....-+.+++.+||..+....+++++||...+++..+++++++..|+|+||+++.
T Consensus 193 ~~~kga~gtqa--sf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~TGQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~ 270 (481)
T KOG2700|consen 193 RGLKGATGTQA--SFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVTGQTYSRKTDAEEVAPLASLGATAHKYATDIRLLA 270 (481)
T ss_pred cccccchhhHH--HHHHhhcccHHHHHHHHHHHHHHhCCCccccccCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888853 4677888888888888889999999998876678999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH 363 (486)
Q Consensus 284 s~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
.|+|+.|||.+.+.|||.||+||||+.+|+++++++.+..+.+..+.+++.+|+||.+++|+++
T Consensus 271 ~~~ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~~~~qw~Ertl~dSa~~---------------- 334 (481)
T KOG2700|consen 271 KFAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNTASVQWHERTLDDSANR---------------- 334 (481)
T ss_pred HHHHhhccccccccccccCCCCCCCchhHHHhHHHHHHHHHHHHHhhhHHHHHhhccccccccc----------------
Confidence 9999999999999999999999999999999999999999999999988999999999998865
Q ss_pred CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319 364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR 443 (486)
Q Consensus 364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~ 443 (486)
|..+|+.|..+++.|....+++.|+.|.|++|.+
T Consensus 335 ----------------------------------------------rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r 368 (481)
T KOG2700|consen 335 ----------------------------------------------RIVLPDAFLTADGNLGTLLNILEGLVVYPKVIER 368 (481)
T ss_pred ----------------------------------------------ceechHHHHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3489999999999999999999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q psy14319 444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQA 482 (486)
Q Consensus 444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a 482 (486)
++....+|+.+|+++++|+++|+++++||+.|+.+..++
T Consensus 369 ~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a 407 (481)
T KOG2700|consen 369 NIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQA 407 (481)
T ss_pred HHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987
No 51
>PLN02848 adenylosuccinate lyase
Probab=99.97 E-value=3.7e-30 Score=273.23 Aligned_cols=187 Identities=16% Similarity=0.080 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCC
Q psy14319 228 KVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRN 307 (486)
Q Consensus 228 ~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrN 307 (486)
+++.+.+.+++.|||... +...++++||+++|++++++.++++++|||+||+.++++||+.|++.++++||||||||||
T Consensus 228 d~~~v~~~la~~LGL~~~-~~~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~e~ge~~e~~~~~~~GSS~MP~KrN 306 (458)
T PLN02848 228 DWPAVAEEFVTSLGLTFN-PYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVN 306 (458)
T ss_pred CHHHHHHHHHHHhCCCCC-CchhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccCCCCCCcCCCCCCcC
Confidence 357889999999999852 2334689999999999999999999999999999888899999888888999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319 308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP 387 (486)
Q Consensus 308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~ 387 (486)
|+.+|+++++++.+.|....++.....+|+|||+++|.+
T Consensus 307 Pv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~s~~----------------------------------------- 345 (458)
T PLN02848 307 PIDFENSEGNLGLANAELSHLSMKLPISRMQRDLTDSTV----------------------------------------- 345 (458)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcchhhccccchhhh-----------------------------------------
Confidence 999999999999999999999876577899999987643
Q ss_pred CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319 388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 467 (486)
Q Consensus 388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~ 467 (486)
+|.. ++++..+..++..+..++++|+||++||++|++.++++ ++|.+++.|++ ++
T Consensus 346 ---------------------e~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~~~~~-~sE~~~~~l~~--~G 400 (458)
T PLN02848 346 ---------------------LRNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQTWEV-LAEPIQTVMRR--YG 400 (458)
T ss_pred ---------------------hccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHccchh-HHHHHHHHHHH--hC
Confidence 2445 89999999999999999999999999999999999997 89999988888 66
Q ss_pred hHHHHHHHHHHHHH
Q psy14319 468 RQVCHEKIRVLSHQ 481 (486)
Q Consensus 468 fr~Ah~~v~~~~~~ 481 (486)
+.+||++|+++++.
T Consensus 401 ~~~A~e~v~~~~~~ 414 (458)
T PLN02848 401 VPEPYEKLKELTRG 414 (458)
T ss_pred hHHHHHHHHHHHHH
Confidence 89999999999864
No 52
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.4e-30 Score=269.86 Aligned_cols=182 Identities=34% Similarity=0.504 Sum_probs=159.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhh-------HHHHHHcCCCCCCCcccccc
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLG-------ASIHKKAGFNSSHIITGQTY 74 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~-------~~~a~~LGf~~~~~~~~av~ 74 (486)
.|+.-+.|+.+|+.++.+++.- -+++| | +||+|+++ +++++.|||..++.+. ++.
T Consensus 160 ~w~~el~R~~~rL~~~~~~~~~-g~i~G--a--------------~Gt~Aa~~~~~~~ve~~v~e~LGL~~~p~st-q~~ 221 (438)
T COG0015 160 NWLAELLRHLERLEEAEERIIV-GKIGG--A--------------VGTLAALGDLGAEVEERVAEKLGLKPAPIST-QVS 221 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hcccc--c--------------hhhHhhcCchhHHHHHHHHHHcCCCCCCCCc-ccc
Confidence 3778899999999999997531 12211 1 23334443 4999999999877544 888
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q psy14319 75 SRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLAT 152 (486)
Q Consensus 75 ~RD~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~ 152 (486)
+||+++|++++|+.+++++.|||.||++|++ ++|+.|||.++|+|||+||||+||+.+|++.++++.+.+.....+ .
T Consensus 222 ~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~-e 300 (438)
T COG0015 222 PRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLL-E 300 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999999999999996 999999999999999999999999999999999999999988644 4
Q ss_pred hccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319 153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS 202 (486)
Q Consensus 153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~ 202 (486)
++++|+|||+.+|..+|..+|+++.+++.+|..+..++++|.||+++|++
T Consensus 301 ~~~~whERdlt~ssver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~ 350 (438)
T COG0015 301 NLVLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRR 350 (438)
T ss_pred HhHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHH
Confidence 56999999999999999999999999999999999999999999999998
No 53
>PRK12425 fumarate hydratase; Provisional
Probab=99.97 E-value=4.5e-30 Score=273.35 Aligned_cols=187 Identities=22% Similarity=0.176 Sum_probs=151.4
Q ss_pred hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKV 78 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~ 78 (486)
+|+++|.||.+|++++.++++.. +| ++|+ |+.++ +|+.. -......++++|||..+ .++.|++++||+
T Consensus 201 a~~~~l~rd~~RL~~~~~r~~~~plG---ggAv-GT~~~--~~~~~---~~~~~~~La~~LG~~~~~~~n~~da~~~rD~ 271 (464)
T PRK12425 201 AFVAQLDYAERAIRAALPAVCELAQG---GTAV-GTGLN--APHGF---AEAIAAELAALSGLPFVTAPNKFAALAGHEP 271 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---Cchh-cCccc--CCccH---HHHHHHHHHHHhCCCCcccccHHHHhcccHH
Confidence 79999999999999999999864 66 6888 88885 65310 01123467888899986 356699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---h--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319 79 DVIVTGVLSSLGASIHKLATDLRLLA---H--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA 153 (486)
Q Consensus 79 ~~e~~~~la~la~~LsRlA~DL~l~s---s--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~ 153 (486)
++|+++++++++++|+|||+||++|+ + |+|+.+|+ .++|||||||||||+.+|.+|++|+++.|+..+++...
T Consensus 272 ~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~--~~~GSSiMPqK~NP~~~E~i~~~a~~v~G~~~~v~~~~ 349 (464)
T PRK12425 272 LVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPA--NEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAA 349 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCC--CCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999 4 88999985 38999999999999999999999999999998766443
Q ss_pred ccccccCCCchhhH----hhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 154 STQWMERTLDDSAN----RRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 154 ~~~~~erDl~~~~~----~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
.. ++++.... ....++++..+...++.++..|+++|+||++||++.
T Consensus 350 ~~----~~~q~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~ 399 (464)
T PRK12425 350 SQ----GHLQLNVFKPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAH 399 (464)
T ss_pred hc----CCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 32 33333211 123455666667799999999999999999999984
No 54
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.97 E-value=9.4e-30 Score=270.47 Aligned_cols=189 Identities=20% Similarity=0.197 Sum_probs=156.2
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.. ++| ++|+ |+.++ +|+.- -.....++|++|||..+ .++.+++++||++
T Consensus 198 ~~~~~l~r~~~rL~~~~~~~~~~-pLG-g~Av-Gt~~~--~~~~~---~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~ 269 (450)
T cd01357 198 AYATALKRDRARIYKARERLREV-NLG-GTAI-GTGIN--APPGY---IELVVEKLSEITGLPLKRAENLIDATQNTDAF 269 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCC-CCce-eCCCC--CChhH---HHHHHHHHHHHhCCCCccCcCHHHHHhccHHH
Confidence 68999999999999999999853 442 3466 88775 66410 01234579999999963 3456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--h
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--T 152 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~ 152 (486)
++++++++.++++|+|||+|+++|++ |+||.+|+ +++|||||||||||+.+|++|++|+++.|+..++++ .
T Consensus 270 ~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~p~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~ 347 (450)
T cd01357 270 VEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLPA--VQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAE 347 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEECCC--CCCcCCCCCCCcCcHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999999999993 99999984 789999999999999999999999999999987645 5
Q ss_pred hccccccCCCchhhHhhhchHHHHHHHHHHHHHH-HHhhhccccCHHhhhhh
Q psy14319 153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITL-QNVLEGLVVYPKETYSI 203 (486)
Q Consensus 153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~-~~vl~~l~vn~erm~~~ 203 (486)
+++.+|+++.+... ..++++++.+..++..+ ..++++|+||++||++.
T Consensus 348 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~ 396 (450)
T cd01357 348 AGQLELNVFEPVIA---YNLLESIDILTNAVRTLRERCIDGITANEERCREY 396 (450)
T ss_pred cCcchhhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 67778777654332 34556666999999999 49999999999999983
No 55
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=1.2e-29 Score=260.77 Aligned_cols=176 Identities=26% Similarity=0.240 Sum_probs=153.0
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|++.|.||.+|+.++.++++. .++|| .+.+|+.+++. + -.+..+++++|||..|..+| +++||+++|
T Consensus 161 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-avGtg~~~~~~-~-------~~v~~~~a~~LGl~~~~~~~--~~~rd~~~e 228 (338)
T TIGR02426 161 GWLAAVLRARDRLAALRTRALP-LQFGG-AAGTLAALGTR-G-------GAVAAALAARLGLPLPALPW--HTQRDRIAE 228 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh-cCCcc-hhccCCCccch-H-------HHHHHHHHHHhCcCCCCCcc--hhhhHHHHH
Confidence 6899999999999999999974 35534 45566555311 0 12357999999999987665 479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
++++++.++++++|||+||++|++ |+|+.+++ ++|||||||||||+.+|+++++|+++.|.... ++..+++++|
T Consensus 229 ~~~~l~~la~~l~ria~Dl~l~s~~e~gei~~~~---~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~E 304 (338)
T TIGR02426 229 FGSALALVAGALGKIAGDIALLSQTEVGEVFEAG---GGGSSAMPHKRNPVGAALLAAAARRVPGLAAT-LHAALPQEHE 304 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhCC---CCCcccCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhchHhhc
Confidence 999999999999999999999995 99998855 58999999999999999999999999999986 4566899999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhcc
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGL 193 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l 193 (486)
||...|..+|..+|+++.+++.++..+..++++|
T Consensus 305 r~~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 305 RSLGGWHAEWETLPELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999875
No 56
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.96 E-value=2.1e-29 Score=268.81 Aligned_cols=180 Identities=19% Similarity=0.178 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHcCCC-CCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFT-SSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~-~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+.+++++.|||. .+. |..+++++||+++|++++++.++++|+|||+||++|+| ||||.+|+ .++||||
T Consensus 243 ~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~lp~--~~~GSSi 320 (464)
T PRK00485 243 AERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLPE--NEPGSSI 320 (464)
T ss_pred HHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEcCC--CCCCCCC
Confidence 578888999999999 433 45667899999999999999999999999999999994 99999986 4799999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++|+++.|.+.+++..+...++||+...|
T Consensus 321 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~e~~~~~~------------------------------------- 363 (464)
T PRK00485 321 MPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKP------------------------------------- 363 (464)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhccCcccccccCh-------------------------------------
Confidence 9999999999999999999999999999777788888875321
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
.-+|..+++++.+...++.+...++++|+||++||+++++.+.+ + +..|
T Consensus 364 -------------------------~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l~~~~~--~----~t~L 412 (464)
T PRK00485 364 -------------------------VIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLM--L----VTAL 412 (464)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCe--e----HHHh
Confidence 01467888999999898888889999999999999999988765 3 3455
Q ss_pred HHcCCChHHHHHHHHHHH
Q psy14319 462 VKAGGDRQVCHEKIRVLS 479 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~ 479 (486)
++. +||++||+++.++.
T Consensus 413 a~~-lg~~~A~~~~~~a~ 429 (464)
T PRK00485 413 NPH-IGYDKAAKIAKKAH 429 (464)
T ss_pred ccc-cCHHHHHHHHHHHH
Confidence 555 99999999666553
No 57
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=99.96 E-value=3.1e-29 Score=267.92 Aligned_cols=189 Identities=19% Similarity=0.194 Sum_probs=150.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.+ ++| .+|+ |+.++ +|+. -.+.+..+++++|||+.+ .++++++++||++
T Consensus 203 ~~~~~l~r~~~rL~~~~~~~~~~-pLG-g~Av-GT~~~--~~~~---~~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~ 274 (473)
T PRK13353 203 AYARALKRDRKRIQQAREHLYEV-NLG-GTAV-GTGLN--ADPE---YIERVVKHLAAITGLPLVGAEDLVDATQNTDAF 274 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-CCC-Cccc-cCCcc--CChh---HHHHHHHHHHHHhCCCCccccchHhhhcccHHH
Confidence 69999999999999999999853 442 3466 88886 7752 112334578999999953 3567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--h
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--T 152 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~ 152 (486)
++++++++.++++|+|||+||++|+ +|+||.+|+ +++|||||||||||+.+|++|++|+++.|+...++. .
T Consensus 275 ~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~lp~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~ 352 (473)
T PRK13353 275 VEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLPA--VQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAE 352 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEECCC--CCCCCCCCCCCcCChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999 499999987 799999999999999999999999999999987553 4
Q ss_pred hccccccCCCchhhHhhhchHHHHHHHH-HHHHHHHHhhhccccCHHhhhhh
Q psy14319 153 ASTQWMERTLDDSANRRLTLSESFLTTD-CLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~-~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
+++.+|+++.+... ..+++++..+. .+..+...++++|+||++||++.
T Consensus 353 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~ 401 (473)
T PRK13353 353 AGQLELNVMEPVIA---FNLLESISILTNACRAFTDNCVKGIEANEERCKEY 401 (473)
T ss_pred cCChhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 56677666443321 23344555546 44444458999999999999983
No 58
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.96 E-value=2.6e-29 Score=266.76 Aligned_cols=192 Identities=20% Similarity=0.188 Sum_probs=158.1
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCC-C-CCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNS-S-HIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~-~-~~~~~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.+ ++| .+|+ |+.++ +|+.- ...+..++|++|||.. + .++.|++++||++
T Consensus 198 ~~~~~l~r~~~rL~~~~~~~~~~-plG-g~A~-Gt~~~--~~~~~---~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~ 269 (450)
T cd01596 198 GYAAQLARDIARIEAALERLREL-NLG-GTAV-GTGLN--APPGY---AEKVAAELAELTGLPFVTAPNLFEATAAHDAL 269 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCC-Ccce-eCCCC--CChhH---HHHHHHHHHHHhCCCCccCcCHHHHHhcchHH
Confidence 68999999999999999999853 442 3455 88776 66421 0133457899999995 4 3456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS 154 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~ 154 (486)
+++++++++++++|+|||+||++|+ +|+||.+|+ +++|||||||||||+.+|++|++++++.|....++....
T Consensus 270 ~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~gev~~~~--~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~ 347 (450)
T cd01596 270 VEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLPA--NQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGS 347 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCeeEECCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 9999999999999999999999999 399999987 689999999999999999999999999999998665777
Q ss_pred cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
..+++|....+......++++......++..+..++++|+||++||++.
T Consensus 348 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~ 396 (450)
T cd01596 348 AGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEY 396 (450)
T ss_pred cCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 8889985554432223667777777777777779999999999999983
No 59
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=99.96 E-value=4.3e-29 Score=265.61 Aligned_cols=190 Identities=17% Similarity=0.134 Sum_probs=154.6
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC--CcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH--IITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~--~~~~av~~RD~~ 79 (486)
+|.+.|.||.+|++++.++++.. ++| .+|+ |+.++ +|+.. | .....+++++|||+.+. |+||++++||++
T Consensus 200 ~~~~~l~r~~~RL~~~~~~~~~~-~lG-g~Av-GT~~~--~~~~~-~--~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~ 271 (458)
T TIGR00979 200 GYVAQLEHGLERIAYSLPHLYEL-AIG-GTAV-GTGLN--THPGF-D--EKVAEEIAKETGLPFVTAPNKFEALAAHDAI 271 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCC-CChh-cCCcc--CChhH-H--HHHHHHHHHHhCCCCeecCcHHHHHcccHHH
Confidence 68999999999999999999853 442 3466 88775 66421 0 12234799999999853 568999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS 154 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~ 154 (486)
+|++++++.++++|+|||+||++|+ +|+||.+|+ +++|||||||||||+.+|+++++|+++.|....++....
T Consensus 272 ~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~p~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~ 349 (458)
T TIGR00979 272 VEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIPE--NEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGS 349 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEECCC--CCCCCCCCCCCcCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999 399999987 699999999999999999999999999999987664432
Q ss_pred cccccCCCc--hhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 155 TQWMERTLD--DSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 155 ~~~~erDl~--~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
. ++.++. .+...|..++++......++.....++++|+||++||++.
T Consensus 350 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~n 398 (458)
T TIGR00979 350 Q--GNFELNVFKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQL 398 (458)
T ss_pred h--ccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 2 222222 2333377888888888888888889999999999999983
No 60
>PLN00134 fumarate hydratase; Provisional
Probab=99.96 E-value=6.8e-29 Score=264.10 Aligned_cols=192 Identities=18% Similarity=0.159 Sum_probs=155.8
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC--CcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH--IITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~--~~~~av~~RD~~ 79 (486)
+|++.|.||.+|+.++.++++.. ++|| +|+ |+.++ +|+.. ...+..+++++|||..+. ++.|++++||++
T Consensus 195 ~~~~~l~r~~~RL~~~~~~~~~~-~lGg-~Av-GT~~~--~~~~~---~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~ 266 (458)
T PLN00134 195 GYATQVKYGLNRVQCTLPRLYEL-AQGG-TAV-GTGLN--TKKGF---DEKIAAAVAEETGLPFVTAPNKFEALAAHDAF 266 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCC-eee-cCCcc--CChhH---HHHHHHHHHHHhCCCCCCCccHHHHhcCCHHH
Confidence 68999999999999999999853 4434 455 76665 66421 012234799999999863 456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS 154 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~ 154 (486)
++++++++.++++|+|||+||++|+ +|+||.+|+ .++|||||||||||+.+|.++++|+++.|....++....
T Consensus 267 ~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~lp~--~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~ 344 (458)
T PLN00134 267 VELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPE--NEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGS 344 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEECCC--CCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999999999999999999999 499999987 369999999999999999999999999999987664444
Q ss_pred cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
..+++.+...+.+.|..++++......++.+...++++|+||++||++.
T Consensus 345 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~ 393 (458)
T PLN00134 345 AGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKL 393 (458)
T ss_pred cCCchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 3444433333334467788888888888888889999999999999983
No 61
>PRK09285 adenylosuccinate lyase; Provisional
Probab=99.96 E-value=4.7e-29 Score=265.03 Aligned_cols=190 Identities=17% Similarity=0.109 Sum_probs=153.3
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCcee-ecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDV 80 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~-a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~ 80 (486)
.|++.|.||.+|++++ ..+++..|..|++ +-. ..++ ..|. ..+...++++|||..+... +++.+||+++
T Consensus 186 ~~~~~l~r~~~rL~~~-~~~g~~~GAvGt~~a~~-~~~~-~~~~------~~v~~~~~~~LGL~~~~~~-~~v~~rD~~~ 255 (456)
T PRK09285 186 NVAYRLERQLKQLEAV-EILGKINGAVGNYNAHL-AAYP-EVDW------HAFSREFVESLGLTWNPYT-TQIEPHDYIA 255 (456)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhcccccccHHHHh-hhcC-CccH------HHHHHHHHHHhCCCCCCCc-cchhccHHHH
Confidence 6899999999999999 3343333322221 100 0001 0000 0123467779999975422 3589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-ccccc
Q psy14319 81 IVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS-TQWME 159 (486)
Q Consensus 81 e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~-~~~~e 159 (486)
+++++++.++++|+|||+|+++|++++|+.|+++++++|||+|||||||+.+|+++++++.+.+.... +..++ ..+||
T Consensus 256 e~~~~la~~a~~L~kia~Di~ll~~~~e~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~-~~~~~~~~~~e 334 (456)
T PRK09285 256 ELFDAVARFNTILIDLDRDVWGYISLGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGLANALLEH-LAAKLPISRWQ 334 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhhhccCCCCCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHH-HHhhccHHhhC
Confidence 99999999999999999999999998898888888999999999999999999999999999988765 44555 78999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
||+++|..+|.. ++++..+..++..+..++++|+||++||++.
T Consensus 335 RD~~~~~~e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~n 377 (456)
T PRK09285 335 RDLTDSTVLRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAED 377 (456)
T ss_pred CcCchhhhhcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 999999999998 9999999999999999999999999999984
No 62
>PRK12425 fumarate hydratase; Provisional
Probab=99.96 E-value=2.6e-28 Score=259.89 Aligned_cols=181 Identities=23% Similarity=0.214 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
...+.+.+++.|||+.+ .|.++++++||+++|++++++.++++|+|||+||++|+| |+|+.+|. .++||||
T Consensus 241 ~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~--~~~GSSi 318 (464)
T PRK12425 241 AEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPA--NEPGSSI 318 (464)
T ss_pred HHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCC--CCCCCCC
Confidence 46788889999999974 367788999999999999999999999999999999995 88999884 3999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|.++++|++++|++.+++.+....+++. +|+.|
T Consensus 319 MPqK~NP~~~E~i~~~a~~v~G~~~~v~~~~~~~~~q~-------------------------------------n~~~~ 361 (464)
T PRK12425 319 MPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQL-------------------------------------NVFKP 361 (464)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh-------------------------------------hhcch
Confidence 99999999999999999999999999887643211110 11221
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
... ...++++..+...++.++..|+++|+||++||+++++. +++++ ..|
T Consensus 362 -----------~~~--------------~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~--~~~~a----t~L 410 (464)
T PRK12425 362 -----------VII--------------HNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLER--GLMLV----TAL 410 (464)
T ss_pred -----------HHH--------------HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc--ccHHH----HHh
Confidence 111 13677778888899999999999999999999999987 45644 455
Q ss_pred HHcCCChHHHHHHHHHHHH
Q psy14319 462 VKAGGDRQVCHEKIRVLSH 480 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~~ 480 (486)
.++ +||++||++++++..
T Consensus 411 ~~~-ig~~~A~~ia~~a~~ 428 (464)
T PRK12425 411 NPH-IGYDKAAEIAKKAYA 428 (464)
T ss_pred hhc-cCHHHHHHHHHHHHH
Confidence 656 999999988876644
No 63
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=99.96 E-value=1e-28 Score=260.08 Aligned_cols=187 Identities=16% Similarity=0.109 Sum_probs=153.5
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhh-h-h--hhhhhhHHHHHHcCCCCCCCccccccccc
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIV-T-G--VLSSLGASIHKKAGFNSSHIITGQTYSRK 77 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~-~-G--t~a~~~~~~a~~LGf~~~~~~~~av~~RD 77 (486)
+|.+.|.||.+|++++.... + +| | ...+ ++..- . + ....+.+.+++.|||..+..+| ++.+||
T Consensus 164 ~w~~~L~r~~~RL~~~~~~g-~-~g--G------avGt--~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~~~~-~v~~rD 230 (425)
T cd01598 164 VFVYRLERQYKQLKQIEILG-K-FN--G------AVGN--FNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTT-QIEPHD 230 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhh-e-ee--C------chhh--hhhhhhccCcccHHHHHHHHHHHhCcCCCCccc-chhccH
Confidence 68999999999999982211 1 11 2 1111 11100 0 0 0124456899999999876665 588999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q psy14319 78 VDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS-TQ 156 (486)
Q Consensus 78 ~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~-~~ 156 (486)
+++|+++++++++++++|||+|+++|++-+|+.|+++++++|||||||||||+.+|+++++++.+.+.... +..++ ..
T Consensus 231 ~~~e~~~~La~la~~L~kia~Di~ll~s~ge~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~a~~~~~~-~~~~~~~~ 309 (425)
T cd01598 231 YIAELFDALARINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNH-LSAKLPIS 309 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeecCCCCCCCcCCCCCCcCchHHHHHHHHHHHHHHHHHH-HHhhhhhh
Confidence 99999999999999999999999999987777887778899999999999999999999999999887764 44566 78
Q ss_pred cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
+||||+++|..+|.. ++++..+..++..+..++++|+||++||++.
T Consensus 310 ~~eRD~~~~~~e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~n 355 (425)
T cd01598 310 RLQRDLTDSTVLRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLED 355 (425)
T ss_pred hhcccccchhhhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 999999999999988 9999999999999999999999999999983
No 64
>PLN02848 adenylosuccinate lyase
Probab=99.96 E-value=4.2e-28 Score=257.56 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=153.4
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|++.|.|+.+|+.++. ..++..|-.|..+..++.|+ .+|+. ...+.+++.|||...+. ..++.+||+++|
T Consensus 189 ~w~~~L~r~~~rL~~~~-l~g~~~GAvGt~aa~~~~~~-~~d~~------~v~~~la~~LGL~~~~~-~~~v~~rD~~~e 259 (458)
T PLN02848 189 NFAYRLSRQRKQLSEVK-IKGKFAGAVGNYNAHMSAYP-EVDWP------AVAEEFVTSLGLTFNPY-VTQIEPHDYMAE 259 (458)
T ss_pred HHHHHHHHHHHHHHHHH-hccEeecccchhhhhhhccC-CCCHH------HHHHHHHHHhCCCCCCc-hhhHhccHHHHH
Confidence 58889999999888772 22232232222222222332 23421 12347778899985221 136899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT 161 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~erD 161 (486)
++++++.++++++|||+|++.+++++|+.|++.++++|||||||||||+.+|+++++++.+.|....++...+.+++|||
T Consensus 260 ~~~~La~~a~~l~kia~Di~~~~e~ge~~e~~~~~~~GSS~MP~KrNPv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD 339 (458)
T PLN02848 260 LFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVNPIDFENSEGNLGLANAELSHLSMKLPISRMQRD 339 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCcccccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 99999999999999999999888899998887778999999999999999999999999999999875533377889999
Q ss_pred CchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 162 l~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
+++|..+|.. ++++..+..++..+..++++|+||++||++.
T Consensus 340 ~~~s~~e~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~n 380 (458)
T PLN02848 340 LTDSTVLRNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAED 380 (458)
T ss_pred cchhhhhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 9999999998 9999999999999999999999999999984
No 65
>PLN00134 fumarate hydratase; Provisional
Probab=99.95 E-value=1.1e-27 Score=254.93 Aligned_cols=181 Identities=20% Similarity=0.219 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+.+.+++.|||..+ .+..+++++||++++++++++.++++|+|||+||++|+| ||||.+|+ .++||||
T Consensus 235 ~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~lp~--~~~GSSi 312 (458)
T PLN00134 235 DEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPE--NEPGSSI 312 (458)
T ss_pred HHHHHHHHHHHhCCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEECCC--CCCCCCC
Confidence 57888899999999964 256678899999999999999999999999999999994 89999986 3699999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++|+++.|.+.+++.....++++.
T Consensus 313 MP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~------------------------------------------ 350 (458)
T PLN00134 313 MPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFEL------------------------------------------ 350 (458)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh------------------------------------------
Confidence 99999999999999999999999998875432111110
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
++..|.+ .|..+++++.+...+..+...|+++|+||++||+++++.+.+++ ..|
T Consensus 351 ------~~~~~~i--------------~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~------~~L 404 (458)
T PLN00134 351 ------NVFKPLI--------------AYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLV------TAL 404 (458)
T ss_pred ------hccchHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchH------HHh
Confidence 1112221 36789999999999999989999999999999999999987754 466
Q ss_pred HHcCCChHHHHHHHHHHHH
Q psy14319 462 VKAGGDRQVCHEKIRVLSH 480 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~~ 480 (486)
+++ +||++||++++++..
T Consensus 405 a~~-ig~~~A~~~~~~a~~ 422 (458)
T PLN00134 405 NPK-IGYDKAAAVAKKAHK 422 (458)
T ss_pred hhc-cCHHHHHHHHHHHHH
Confidence 665 999999997666644
No 66
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=99.95 E-value=1.1e-27 Score=254.89 Aligned_cols=181 Identities=20% Similarity=0.190 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHcCCCCCc--cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTSSH--IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a~--~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+.+.+++.|||..+. |..+++++||+++|++++++.++++|+|||+||++|+| ||||.+|+ +++||||
T Consensus 240 ~~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~p~--~~~GSSi 317 (458)
T TIGR00979 240 DEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIPE--NEPGSSI 317 (458)
T ss_pred HHHHHHHHHHHhCCCCeecCcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEECCC--CCCCCCC
Confidence 467888899999998742 33346799999999999999999999999999999994 99999986 6999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++|+++.|...+++.+... +++++
T Consensus 318 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~------------------------------~~~~~------------ 355 (458)
T TIGR00979 318 MPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQ------------------------------GNFEL------------ 355 (458)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhhHHHHHHHHHh------------------------------ccchh------------
Confidence 999999999999999999999999988866421 11111
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
+.+.|.. .|..+++++.+..++..+...++++|+||+|||+++++.+.+ ++..|
T Consensus 356 ------~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~------~~t~L 409 (458)
T TIGR00979 356 ------NVFKPVI--------------IYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLM------LVTAL 409 (458)
T ss_pred ------hhcchHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCcc------HHHHh
Confidence 1112221 367899999999999999889999999999999999988766 34566
Q ss_pred HHcCCChHHHHHHHHHHHH
Q psy14319 462 VKAGGDRQVCHEKIRVLSH 480 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~~ 480 (486)
++. +||++||++++++..
T Consensus 410 a~~-lg~~~A~~~~~~a~~ 427 (458)
T TIGR00979 410 NPH-IGYDNAAKIAKKAHK 427 (458)
T ss_pred hhc-cCHHHHHHHHHHHHH
Confidence 665 999999996666544
No 67
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=99.95 E-value=5e-28 Score=257.80 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=149.8
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~ 79 (486)
+|.+.|.||.+|+.++.++++.. ++|| +|+ |+.++ +|+.- ......++|++|||+.+ .+.+|++++||++
T Consensus 201 ~~~~~l~r~~~RL~~~~~~~~~~-~lGg-~Av-GT~~~--~~~~~---~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~ 272 (468)
T TIGR00839 201 AFSILLEEEVKNIKRTAELLLEV-NLGA-TAI-GTGLN--TPPEY---SPLVVKKLAEVTGLPCVPAENLIEATSDCGAY 272 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CCCC-cce-eCCCc--CChhH---HHHHHHHHHHHhCCCCCCCccHHHHhcccHHH
Confidence 68999999999999999999853 4533 456 88775 66421 12334588999999986 3567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS 154 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~ 154 (486)
+|++++++.++++|+|||+||++|++ |+||.+|+ +++|||||||||||+.+|++|++|+++.|....++....
T Consensus 273 ~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~~--~~~gSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~ 350 (468)
T TIGR00839 273 VMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE--LQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAE 350 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCCC--CCCCCCCCCCCcCcHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 99999999999999999999999993 78899984 789999999999999999999999999999987644211
Q ss_pred cccccCCCchhhHhhhchHHH----HHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 155 TQWMERTLDDSANRRLTLSES----FLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~~l~~a----~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
. .+++.|..+|..++++ ......++..+..++++++||++||++.
T Consensus 351 ~----~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~ 399 (468)
T TIGR00839 351 A----GQLQLNVMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGY 399 (468)
T ss_pred c----CChHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 1 2334555666655554 4444555557889999999999999983
No 68
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.95 E-value=7.3e-28 Score=256.21 Aligned_cols=190 Identities=16% Similarity=0.119 Sum_probs=153.1
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~ 79 (486)
+|.+.|.||.+|+.++.++++.+ ++|| +|+ |+.++ +|+... ..+..++|++|||..+ .++.|++++||++
T Consensus 199 ~~~~~l~r~~~rL~~~~~r~~~~-~lGg-~A~-Gt~~~--~~~~~~---~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~ 270 (455)
T cd01362 199 GYAAQLEHAIARIEAALPRLYEL-ALGG-TAV-GTGLN--AHPGFA---EKVAAELAELTGLPFVTAPNKFEALAAHDAL 270 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CcCC-eec-cCCcc--CChhHH---HHHHHHHHHHhCCCCccCCCHHHHHhCCHHH
Confidence 68999999999999999999853 4433 354 88775 664210 1234589999999954 3456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA- 153 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~- 153 (486)
++++++++.++++|+|||+||++|+ +|+||.+|+ +++|||||||||||+.+|++|++++++.|....++...
T Consensus 271 ~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~gev~~~~--~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~ 348 (455)
T cd01362 271 VEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGS 348 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCccCCCceEECCC--CCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 9999999999999999999999999 399999987 68999999999999999999999999999998765432
Q ss_pred -ccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 154 -STQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 154 -~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
.+..++.+.+.. .|..++++......++..+..++++|+||++||++.
T Consensus 349 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~ 397 (455)
T cd01362 349 SGNFELNVFKPVI--IYNLLQSIRLLADACRSFADKCVAGIEPNRERIAEL 397 (455)
T ss_pred cCchhhhhcchHH--HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 222333444322 366777888888888888889999999999999983
No 69
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=99.95 E-value=3e-27 Score=252.63 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+.+.+++.|||..+ .|.++++++||+++|++++++.++++|+|||+||++|+| ||||.+|+ +++||||
T Consensus 243 ~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~lp~--~~~GSSi 320 (473)
T PRK13353 243 IERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLPA--VQPGSSI 320 (473)
T ss_pred HHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEECCC--CCCCCCC
Confidence 46778889999999842 266778899999999999999999999999999999994 99999986 8999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++|+++.|++++++.......++ ++.
T Consensus 321 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~--------------------------~~~-------------- 360 (473)
T PRK13353 321 MPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLE--------------------------LNV-------------- 360 (473)
T ss_pred CCCCcCChHHHHHHHHHHHHHhHHHHHHHHHHcCChh--------------------------hhh--------------
Confidence 9999999999999999999999999887653211110 000
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHH---H-HHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTT---D-CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENI 457 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~---~-~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~ 457 (486)
-+|..+++++..+ . .+..+...++++|+||++||+++++.+.+ +++++
T Consensus 361 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~~~~~--l~t~L 412 (473)
T PRK13353 361 --------------------------MEPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVG--IATAL 412 (473)
T ss_pred --------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcc--hHHHH
Confidence 0233444444444 6 55555568999999999999999988755 55666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 458 IMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 458 ~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+..| ||++|++++++|.++
T Consensus 413 a~~L---------gh~~v~~~~~~a~~~ 431 (473)
T PRK13353 413 NPHI---------GYEAAARIAKEAIAT 431 (473)
T ss_pred HHHH---------HHHHHHHHHHHHHHh
Confidence 6665 699999999988654
No 70
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.95 E-value=2.5e-27 Score=253.14 Aligned_cols=180 Identities=20% Similarity=0.211 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHcCCCC-C-ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTS-S-HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~-a-~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+.+.+++.|||.. + .|.++++++||+++|++++++.++++|+|||+||++|+| ||||.+|+ +++||||
T Consensus 245 ~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~lp~--~~~GSSi 322 (472)
T PRK12273 245 IELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPA--VQAGSSI 322 (472)
T ss_pred HHHHHHHHHHHcCCCcccCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEECCC--CCCcCCC
Confidence 4788899999999985 3 367788999999999999999999999999999999995 89999984 8999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|++|++|+++.|+..+++.......++ ++.
T Consensus 323 MPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~~~~--------------------------~~~-------------- 362 (472)
T PRK12273 323 MPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLE--------------------------LNV-------------- 362 (472)
T ss_pred CCcccCcHHHHHHHHHHHHHhhhHHHHHHHHHcCCch--------------------------hhh--------------
Confidence 9999999999999999999999999887543211000 000
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHH-hchhCCeeCHHHHHHHHhccCChhHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQ-NVLEGLVVYPKVIQRHIDQELPFMATENIIMA 460 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~ 460 (486)
.+|..+ ..+.+++..+..++..+. .++++++||++||+++++.+.+ +++++++.
T Consensus 363 ------------------~~~~~~-----~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~--~~t~LA~~ 417 (472)
T PRK12273 363 ------------------MEPVIA-----YNLFESISILTNACRTLREKCIDGITANEERCREYVENSIG--IVTALNPY 417 (472)
T ss_pred ------------------hhhhhH-----HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCc--hHHHHHHH
Confidence 011111 234455999999999999 5999999999999999987755 55666666
Q ss_pred HHHcCCChHHHHHHHHHHHHHhhh
Q psy14319 461 MVKAGGDRQVCHEKIRVLSHQAGA 484 (486)
Q Consensus 461 L~~~g~~fr~Ah~~v~~~~~~a~~ 484 (486)
| +|+++++++++|.+
T Consensus 418 L---------~~~~a~~lv~~a~~ 432 (472)
T PRK12273 418 I---------GYENAAEIAKEALE 432 (472)
T ss_pred H---------HHHHHHHHHHHHHH
Confidence 5 35555555555543
No 71
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.95 E-value=4.3e-27 Score=249.87 Aligned_cols=180 Identities=21% Similarity=0.212 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHcCCCC-Cc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTS-SH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~-a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+++.+++.|||.. +. +..+++++||++++++++++.++.+|+|||+||++|+| ||||.+|+ +++||||
T Consensus 238 ~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~gev~~~~--~~~GSS~ 315 (450)
T cd01596 238 AEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLPA--NQPGSSI 315 (450)
T ss_pred HHHHHHHHHHHhCCCCccCcCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCeeEECCC--CCCCCCC
Confidence 5788899999999984 33 56678899999999999999999999999999999994 89999986 7899999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++++++.|..++++......++||....
T Consensus 316 MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~e~~~~~-------------------------------------- 357 (450)
T cd01596 316 MPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFK-------------------------------------- 357 (450)
T ss_pred CCCCCCCHHHHHHHHHHHHHhccHHHHHHHhhcCcccccchh--------------------------------------
Confidence 999999999999999999999999999877777777762110
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
|.. ....+++++.+...++.+...++++|+||++||+++++.+.+ +++++++.|
T Consensus 358 ----------~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~--~~t~LA~~l 411 (450)
T cd01596 358 ----------PVI--------------AYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLM--LVTALNPHI 411 (450)
T ss_pred ----------hHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcc--hHHHHhHHH
Confidence 000 012677888888888888889999999999999999988755 446566654
Q ss_pred HHcCCChHHHHHHHHHHH
Q psy14319 462 VKAGGDRQVCHEKIRVLS 479 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~ 479 (486)
+|+.||+++.++.
T Consensus 412 -----g~~~a~~~v~~a~ 424 (450)
T cd01596 412 -----GYEKAAEIAKEAL 424 (450)
T ss_pred -----hHHHHHHHHHHHH
Confidence 6777777665543
No 72
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.95 E-value=2.3e-27 Score=244.88 Aligned_cols=176 Identities=24% Similarity=0.215 Sum_probs=149.3
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI 81 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e 81 (486)
+|++.|.||.+|+.++.+++.. .+++| .+.++..++.. .....+++|++|||..+. +| ..+||++++
T Consensus 170 ~~~~~l~r~~~rL~~~~~~~~~-~~lGG-AvGt~~~~~~~--------~~~~~~~~a~~LGl~~~~-~~--~~~rD~~~e 236 (351)
T PRK05975 170 SWRAPLLRHRDRLEALRADVFP-LQFGG-AAGTLEKLGGK--------AAAVRARLAKRLGLEDAP-QW--HSQRDFIAD 236 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-cCCcc-HhccCccCCCc--------HHHHHHHHHHHhCcCCCc-ch--hhccHHHHH
Confidence 6899999999999999998874 24434 22233333210 112257999999997554 44 379999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319 82 VTGVLSSLGASIHKLATDLRLLA--HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159 (486)
Q Consensus 82 ~~~~la~la~~LsRlA~DL~l~s--s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e 159 (486)
++++++.++++++|||+|+++|+ + +|+.+|+ ++|||||||||||+.+|++++.++.+.+.... +..+++.++|
T Consensus 237 ~~~~la~la~~l~kiA~Di~ll~s~e-gev~~~~---~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~-~~~~~~~~~e 311 (351)
T PRK05975 237 FAHLLSLVTGSLGKFGQDIALMAQAG-DEISLSG---GGGSSAMPHKQNPVAAETLVTLARFNATQVSG-LHQALVHEQE 311 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CcccCCC---CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHhcccchhc
Confidence 99999999999999999999999 6 8999986 48999999999999999999999999998875 5577899999
Q ss_pred CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhcccc
Q psy14319 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVV 195 (486)
Q Consensus 160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~v 195 (486)
||...|..+|..+|+++.++..++..+..++++|++
T Consensus 312 r~~~~~~~e~~~lp~~~~~~~~~l~~~~~ll~~l~~ 347 (351)
T PRK05975 312 RSGAAWTLEWMILPQMVAATGAALRLALELAGNIRR 347 (351)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 999999999999999999999999999999999875
No 73
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.95 E-value=7e-27 Score=248.55 Aligned_cols=173 Identities=20% Similarity=0.220 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+.+.+++.|||..+ .|.++++++||++++++++++.++++|+|||+||++|+| ||||.+| .+++||||
T Consensus 238 ~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~p--~~~~GSSi 315 (450)
T cd01357 238 IELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP--AVQPGSSI 315 (450)
T ss_pred HHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEECC--CCCCcCCC
Confidence 57889999999999852 266788899999999999999999999999999999995 8999998 38999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++|+++.|...+++.......++ ++.
T Consensus 316 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~--------------------------~~~-------------- 355 (450)
T cd01357 316 MPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLE--------------------------LNV-------------- 355 (450)
T ss_pred CCCCcCcHHHHHHHHHHHHHhhHHHHHHHHHhcCcch--------------------------hhc--------------
Confidence 9999999999999999999999998885532111000 000
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchH---HHHHHHHHHHHHH-HhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLS---ESFLTTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATENI 457 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~---~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~ 457 (486)
. +|..++ .++.++..++..+ ..++++|+||++||+++++.+.+ +++++
T Consensus 356 ------------------~--------~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~--~~t~L 407 (450)
T cd01357 356 ------------------F--------EPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIG--IVTAL 407 (450)
T ss_pred ------------------c--------hHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcc--hHHHH
Confidence 0 233344 4455999999999 59999999999999999988765 44666
Q ss_pred HHHHHHcCCChHHHHHHHH
Q psy14319 458 IMAMVKAGGDRQVCHEKIR 476 (486)
Q Consensus 458 ~~~L~~~g~~fr~Ah~~v~ 476 (486)
++.| +++.||+++.
T Consensus 408 a~~l-----g~~~a~~~~~ 421 (450)
T cd01357 408 NPYI-----GYEAAAEIAK 421 (450)
T ss_pred HHHH-----HHHHHHHHHH
Confidence 6655 2445555443
No 74
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=99.95 E-value=2.4e-27 Score=252.77 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=145.7
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD 79 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~ 79 (486)
+|++.|.||.+|++++.++++.. ++| ++|+ |+.++ +|+.. .+.+-..+++.+|+..+ .++.|++++||++
T Consensus 209 ~~a~~l~r~~~RL~~~~~~l~~~-pLG-~gAv-GT~~~--~~~~~---~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~ 280 (479)
T PRK14515 209 AYSRVLERDMKRIQQSRQHLYEV-NMG-ATAV-GTGLN--ADPEY---IEAVVKHLAAISELPLVGAEDLVDATQNTDAY 280 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCC-Cccc-cCCCC--CChhH---HHHHHHHHHHHhCCCCCCCcchHHHhcccHHH
Confidence 79999999999999999999853 442 5787 88886 77521 11222366777887644 3667999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---h--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319 80 VIVTGVLSSLGASIHKLATDLRLLA---H--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS 154 (486)
Q Consensus 80 ~e~~~~la~la~~LsRlA~DL~l~s---s--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~ 154 (486)
++++++++.++++|+|||+||++|+ + |+|+.+|+ +++|||||||||||+.+|.++++|+++.|+..++++...
T Consensus 281 ~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp~--~~~GSSiMP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~ 358 (479)
T PRK14515 281 TEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPA--RQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASE 358 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCCC--CCCCcCCCCcccCchHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999999999999999999999 3 77888887 589999999999999999999999999999987664432
Q ss_pred cccccCCCchhhHhhhchHHHHHHHHHHH-HHHHHhhhccccCHHhhhhh
Q psy14319 155 TQWMERTLDDSANRRLTLSESFLTTDCLL-ITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l-~~~~~vl~~l~vn~erm~~~ 203 (486)
...++...-.... ...+++++..+..++ .+...|+++|+||++||++.
T Consensus 359 ~~~le~n~~~p~i-~~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~ 407 (479)
T PRK14515 359 AGQLELNVMEPVL-VFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEY 407 (479)
T ss_pred cccHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 2222222100000 012445566888888 55556999999999999983
No 75
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.95 E-value=2e-26 Score=245.16 Aligned_cols=180 Identities=18% Similarity=0.180 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHcCCCC-C-ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTS-S-HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~-a-~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
+..+.+.+++.|||.. + .+..+++++||+++|++++++.++.+++|||+||++|+| ||||.+|+ +++||||
T Consensus 239 ~~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~gev~~~~--~~~GSS~ 316 (455)
T cd01362 239 AEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPE--NEPGSSI 316 (455)
T ss_pred HHHHHHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCCceEECCC--CCCCCCC
Confidence 4678889999999995 3 245667899999999999999999999999999999994 89999986 6899999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++++++.|.+.+++.....+ +|..
T Consensus 317 MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~-----------------------------------------~~~~- 354 (455)
T cd01362 317 MPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSG-----------------------------------------NFEL- 354 (455)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhHHHHHHHHhcC-----------------------------------------chhh-
Confidence 9999999999999999999999999888653211 1111
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
+..+|. ..|..++.++.+...++.++..++++|+||++||+++++.+.+. + +.|
T Consensus 355 ------~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l~~~~~~--~----~~L 408 (455)
T cd01362 355 ------NVFKPV--------------IIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLML--V----TAL 408 (455)
T ss_pred ------hhcchH--------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcchh--H----HHh
Confidence 000010 12668889999999988888899999999999999999887653 3 445
Q ss_pred HHcCCChHHHHHHHHHHH
Q psy14319 462 VKAGGDRQVCHEKIRVLS 479 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~ 479 (486)
++ ++|||+||++++++.
T Consensus 409 a~-~ig~~~A~~l~~~a~ 425 (455)
T cd01362 409 NP-HIGYDKAAKIAKKAH 425 (455)
T ss_pred cc-ccCHHHHHHHHHHHH
Confidence 54 499999999966553
No 76
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=99.94 E-value=5.4e-26 Score=242.50 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
...+...+++.+|+..+ .|.++++++||++++++++|+.++.+|+|||+||++|+| |+|+.+|+ .++||||
T Consensus 249 ~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp~--~~~GSSi 326 (479)
T PRK14515 249 IEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPA--RQPGSSI 326 (479)
T ss_pred HHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCCC--CCCCcCC
Confidence 45777788888998643 267788899999999999999999999999999999995 66788876 5999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++|+++.|+..+++.......+|.
T Consensus 327 MP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~~~~le~------------------------------------------ 364 (479)
T PRK14515 327 MPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLEL------------------------------------------ 364 (479)
T ss_pred CCcccCchHHHHHHHHHHHHHhHHHHHHHHHhcccHHH------------------------------------------
Confidence 99999999999999999999999998885432111111
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHH-HHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLL-ITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMA 460 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l-~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~ 460 (486)
+.+.|... ..+.+++.++..++ .+...|+++|+||++||+++++.+.+++ ..
T Consensus 365 ------n~~~p~i~---------------~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~l~~s~~l~------t~ 417 (479)
T PRK14515 365 ------NVMEPVLV---------------FNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGII------TA 417 (479)
T ss_pred ------HHhcchhH---------------HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCccHH------HH
Confidence 11122211 13445566788888 5566699999999999999999887643 34
Q ss_pred HHHcCCChHHHHHHHHHHHHHhhh
Q psy14319 461 MVKAGGDRQVCHEKIRVLSHQAGA 484 (486)
Q Consensus 461 L~~~g~~fr~Ah~~v~~~~~~a~~ 484 (486)
|+++ +| |+.|++++++|.+
T Consensus 418 La~~-iG----~~~v~~~a~~A~~ 436 (479)
T PRK14515 418 VNPH-IG----YEAAARVAKEAIA 436 (479)
T ss_pred hcch-hc----HHHHHHHHHHHHH
Confidence 5554 66 4556666666554
No 77
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=99.94 E-value=1.1e-25 Score=239.92 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHcCCCCCc--cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319 229 VKALDRLVTKKAGFTSSH--IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA 301 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a~--~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi 301 (486)
++.+++.+++.|||..+. |..+++++||+++|++++++.++++|+|||+||++|+| +|||.+| .+++||||
T Consensus 241 ~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~--~~~~gSS~ 318 (468)
T TIGR00839 241 SPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP--ELQAGSSI 318 (468)
T ss_pred HHHHHHHHHHHhCCCCCCCccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCC--CCCCCCCC
Confidence 578899999999999752 55667899999999999999999999999999999995 7889987 48999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||||+.+|+++++++++.|....++.+.....++ .|
T Consensus 319 MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~----~~------------------------------------- 357 (468)
T TIGR00839 319 MPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQ----LN------------------------------------- 357 (468)
T ss_pred CCCCcCcHHHHHHHHHHHHHHhHHHHHHHHHhcCChH----hh-------------------------------------
Confidence 9999999999999999999999999886542211110 00
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHH----HHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSES----FLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENI 457 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~----~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~ 457 (486)
.-+|..++++ ..+..++...+..++++++||++||+++++.+.+ ++
T Consensus 358 -------------------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~~~--~~--- 407 (468)
T TIGR00839 358 -------------------------VMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIG--IV--- 407 (468)
T ss_pred -------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhHH--HH---
Confidence 0023344444 5556666667899999999999999999986655 32
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhh
Q psy14319 458 IMAMVKAGGDRQVCHEKIRVLSHQAGA 484 (486)
Q Consensus 458 ~~~L~~~g~~fr~Ah~~v~~~~~~a~~ 484 (486)
+.|+ || -+|+.++++++++.+
T Consensus 408 -~~La----~~-~g~~~a~~~~~~a~~ 428 (468)
T TIGR00839 408 -TYLN----PF-IGHHNGDIVGKICAE 428 (468)
T ss_pred -HHHh----hH-hhHHHHHHHHHHHHH
Confidence 4454 44 366666666666654
No 78
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.92 E-value=1.4e-24 Score=223.44 Aligned_cols=138 Identities=28% Similarity=0.227 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319 229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR 306 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr 306 (486)
+..+++++++.|||..+. ..++++||+++|++++++.++.+++|||+||++|++ |||+.+++ ++|||||||||
T Consensus 199 ~~~v~~~~a~~LGl~~~~--~~~~~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~~e~gei~~~~---~~GSSiMPqK~ 273 (338)
T TIGR02426 199 GGAVAAALAARLGLPLPA--LPWHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGEVFEAG---GGGSSAMPHKR 273 (338)
T ss_pred HHHHHHHHHHHhCcCCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhCC---CCCcccCCCCC
Confidence 467799999999999863 236799999999999999999999999999999998 99998743 69999999999
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319 307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM 386 (486)
Q Consensus 307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~ 386 (486)
||+.+|+++++|+.+.|....++.. +..|+|||...|..
T Consensus 274 NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~Er~~~~~~~---------------------------------------- 312 (338)
T TIGR02426 274 NPVGAALLAAAARRVPGLAATLHAA-LPQEHERSLGGWHA---------------------------------------- 312 (338)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh-chHhhccCCCchHH----------------------------------------
Confidence 9999999999999999999888655 78999999875531
Q ss_pred CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCC
Q psy14319 387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGL 434 (486)
Q Consensus 387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l 434 (486)
+|..+++++.++++++..+..++++|
T Consensus 313 ----------------------e~~~lp~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 313 ----------------------EWETLPELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57799999999999999999998875
No 79
>PRK04833 argininosuccinate lyase; Provisional
Probab=99.92 E-value=1e-24 Score=232.36 Aligned_cols=188 Identities=18% Similarity=0.091 Sum_probs=160.1
Q ss_pred HHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319 230 KALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR 306 (486)
Q Consensus 230 ~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr 306 (486)
+..++++++.|||..+. |..+++++||+++|++++++.++++|+|||+||++|++ ||.++.+ ++.++|||||||||
T Consensus 206 ~~dr~~~a~~LGf~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g~~el~-~~~~~gSSiMPqKr 284 (455)
T PRK04833 206 EIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFNSGEAGFVELS-DRVTSGSSLMPQKK 284 (455)
T ss_pred CCCHHHHHHHhCCCCCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeeC-CCCCCCcccCCCCC
Confidence 34478999999999865 44667999999999999999999999999999999998 7744433 45679999999999
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHHh--hhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccc
Q psy14319 307 NPMRSERLCSLARFLMSLHQNSLATA--STQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILN 384 (486)
Q Consensus 307 NP~~~E~~~~~a~~~~g~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~ 384 (486)
||+.+|+++++++++.|..++++... ...++ ++|+
T Consensus 285 NP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~----------------------------~rd~--------------- 321 (455)
T PRK04833 285 NPDALELIRGKCGRVQGALTGMLMTLKGLPLAY----------------------------NKDM--------------- 321 (455)
T ss_pred CChHHHHHHHHHHHHHhhHHHHHHHHhCChHHH----------------------------hhhh---------------
Confidence 99999999999999999999887543 12223 3333
Q ss_pred cCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHc
Q psy14319 385 QMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKA 464 (486)
Q Consensus 385 ~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~ 464 (486)
|++. ..+++++..+..++.++..++++++||+++|++++. .|+++++++|+.|+++
T Consensus 322 -----------------~~~~-----~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~--~g~~~a~~~a~~L~~~ 377 (455)
T PRK04833 322 -----------------QEDK-----EGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQ--QGYANATELADYLVAK 377 (455)
T ss_pred -----------------hhhH-----HHHHHHHHHHHHHHHHHHHHHhhCeECHHHHHHHHH--ccHHHHHHHHHHHHHc
Confidence 2222 368899999999999999999999999999999965 4789999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhhc
Q psy14319 465 GGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 465 g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
|+|||+||++|+++++++.++
T Consensus 378 g~~~r~Ah~~v~~~~~~a~~~ 398 (455)
T PRK04833 378 GVPFREAHHIVGEAVVEAIRQ 398 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998764
No 80
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.92 E-value=1.1e-24 Score=223.08 Aligned_cols=144 Identities=31% Similarity=0.266 Sum_probs=125.1
Q ss_pred HHHHHHHHHHcCC-CCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319 230 KALDRLVTKKAGF-TSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR 306 (486)
Q Consensus 230 ~~i~~~lA~~LGf-~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr 306 (486)
+.+++++++.||| ..+.+...++++||+++|++++++.++++++|||+|+++|++ |||+.+|+.. ++|||||||||
T Consensus 179 ~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~gev~~~~~~-~~gSS~MP~Kr 257 (325)
T cd01334 179 PIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAK-QPGSSIMPQKV 257 (325)
T ss_pred cchHHHHHHHhcCcCcCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEECCCCC-CCCcccCCCCC
Confidence 8899999999999 444333345899999999999999999999999999999999 9999999766 99999999999
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319 307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM 386 (486)
Q Consensus 307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~ 386 (486)
||+.+|+++++++++.|...+++.. ..++++++..+|
T Consensus 258 NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~~~~~~~~------------------------------------------ 294 (325)
T cd01334 258 NPVILELVRGLAGRVIGNLAALLEA-LKGGPLEDNVDS------------------------------------------ 294 (325)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHH-HhcCchhhhccc------------------------------------------
Confidence 9999999999999999999888766 445555544332
Q ss_pred CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeC
Q psy14319 387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVY 437 (486)
Q Consensus 387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~ 437 (486)
..+|..+++++..+..++..+..++++|+||
T Consensus 295 --------------------~~~~~~l~~~~~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 295 --------------------PVEREALPDSFDLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence 1246799999999999999999999999986
No 81
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=99.91 E-value=7.1e-24 Score=214.17 Aligned_cols=211 Identities=18% Similarity=0.187 Sum_probs=171.5
Q ss_pred hccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCC--CCCccccccccCccHHHHHHHHHHHH
Q psy14319 191 EGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGF--TSSHIITGQTYSRKVDVIVTGVLSSL 268 (486)
Q Consensus 191 ~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf--~~a~~~~~~~~~rd~~~e~~~~l~~~ 268 (486)
..++---+.+.++.+.+-++||. ++....-+..+.+.+++..|+ ..+.|.+.+.+++|.+++++++|..+
T Consensus 212 ~~i~~~l~~l~eLAiGGTAVGTG--------lNa~p~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~l 283 (462)
T COG0114 212 ERIEASLPHLYELAIGGTAVGTG--------LNAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTL 283 (462)
T ss_pred HHHHHHHHHHHHHccCCcccccC--------cCCCccHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHH
Confidence 33333334455555566677774 455666688889999987665 45558899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccc
Q psy14319 269 GASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343 (486)
Q Consensus 269 ~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~ 343 (486)
+.+|.|||+|||+|.| +|||..| +.++||||||+|+||+.+|.+.+.|.+++|+.+++.++.+.+.||
T Consensus 284 A~~L~KIAnDiR~l~SGPr~GLgEi~lP--enePGSSIMPGKVNPtq~EA~tmv~~QV~Gnd~ai~~ags~GnFE----- 356 (462)
T COG0114 284 AVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFE----- 356 (462)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccccccC--CCCCCccCCCCCCCchhHHHHHHHHHHHHcchHHHHHhhccCcee-----
Confidence 9999999999999999 9999965 789999999999999999999999999999999998886544333
Q ss_pred cCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHH
Q psy14319 344 SANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCL 423 (486)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~ 423 (486)
| +|+.|... |+.|.++-.+++++
T Consensus 357 -------------------------L------------------Nv~~Pvi~--------------~N~LqS~~LLada~ 379 (462)
T COG0114 357 -------------------------L------------------NVFKPVIA--------------YNFLQSVRLLADAM 379 (462)
T ss_pred -------------------------e------------------ccccHHHH--------------HHHHHHHHHHHHHH
Confidence 3 55666654 46899999999999
Q ss_pred HHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy14319 424 LITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSH 480 (486)
Q Consensus 424 l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~ 480 (486)
..+...|+.||++|+++|+++++.+..+ +.+|.++ ++++.|-++.+.+-+
T Consensus 380 ~~f~~~ci~gie~n~~~i~~~l~~SlmL------VTaLnp~-IGYdkAa~IAK~A~k 429 (462)
T COG0114 380 RSFADHCIVGIEPNEERIKELLERSLML------VTALNPH-IGYDKAAKIAKKAHK 429 (462)
T ss_pred HHHHHHHhhccccCHHHHHHHHhhCchH------HHhcccc-cchHHHHHHHHHHHH
Confidence 9999999999999999999999887543 3467778 778888777766543
No 82
>PLN02646 argininosuccinate lyase
Probab=99.91 E-value=2.2e-24 Score=230.60 Aligned_cols=191 Identities=17% Similarity=0.157 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCC
Q psy14319 229 VKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYK 305 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqK 305 (486)
.+..++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++ ||++.+| +++++||||||||
T Consensus 219 ~~idr~~~A~~LGf~~~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~v~~~-d~~~~GSSiMPqK 297 (474)
T PLN02646 219 LPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEEFGFVTPS-DAVSTGSSIMPQK 297 (474)
T ss_pred CCCCHHHHHHHhCCCCCCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeeC-CCCCCCcCCCCCC
Confidence 455588999999998765 55678999999999999999999999999999999999 9999997 7899999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccccc
Q psy14319 306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQ 385 (486)
Q Consensus 306 rNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~ 385 (486)
|||+.+|++|++++++.|++.+++.... +++ .++++|+
T Consensus 298 rNP~~~E~ir~~a~~v~G~~~~~~~~~~------~~p--------------------~~~~rD~---------------- 335 (474)
T PLN02646 298 KNPDPMELVRGKSARVIGDLVTVLALCK------GLP--------------------TAYNRDL---------------- 335 (474)
T ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHhc------CCc--------------------hHhhcch----------------
Confidence 9999999999999999999998875531 111 1233333
Q ss_pred CCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcC
Q psy14319 386 MPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAG 465 (486)
Q Consensus 386 ~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g 465 (486)
+++|..+++++.++..++..+..++++|+||++||+++++ .+++++|++++.||++|
T Consensus 336 ---------------------q~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~--~~~~~At~la~~Lv~~G 392 (474)
T PLN02646 336 ---------------------QEDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLP--AGMLDATTLADYLVRKG 392 (474)
T ss_pred ---------------------hhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cCccHHHHHHHHHHHcC
Confidence 2257899999999999999999999999999999999997 46889999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhc
Q psy14319 466 GDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 466 ~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+|||+||++|+++++.|.++
T Consensus 393 i~fr~Ah~iV~~~v~~a~~~ 412 (474)
T PLN02646 393 VPFRETHHIVGAAVALAESK 412 (474)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998654
No 83
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.91 E-value=2.4e-24 Score=208.22 Aligned_cols=118 Identities=42% Similarity=0.676 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q psy14319 85 VLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTL 162 (486)
Q Consensus 85 ~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~erDl 162 (486)
+++.++++++|||+||++|++ |+|+.+|+.++++|||||||||||+.+|+++++++++.|+...++. .++.+||||+
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~~erd~ 100 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALE-NVPLWHERDL 100 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHH-HhHHHhccCC
Confidence 999999999999999999996 9999999878899999999999999999999999999999987554 4489999999
Q ss_pred chhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 163 DDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 163 ~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
+.|..+|..+++++..+..++..+..++++++||++||++.
T Consensus 101 ~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~ 141 (216)
T PRK08937 101 SHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERN 141 (216)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 99999999999999999999999999999999999999983
No 84
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.91 E-value=3.2e-24 Score=236.73 Aligned_cols=187 Identities=17% Similarity=0.121 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh--hccccccCCCCcCcCCC
Q psy14319 229 VKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMA 303 (486)
Q Consensus 229 ~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~--el~~~~~~~~~GSSiMP 303 (486)
++.+++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++ +| |+.+ +.++||||||
T Consensus 205 ~~~~r~~~a~~LG~~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~ss~e~g~~el~~---~~~~gSSiMP 281 (614)
T PRK12308 205 YPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSGESGFIELAD---TVTSGSSLMP 281 (614)
T ss_pred CCCCHHHHHHHhCCCCCcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCEEeCc---cCCCccccCc
Confidence 467788999999999764 55677999999999999999999999999999999999 77 5554 4569999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhHHHHHHh--hhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319 304 YKRNPMRSERLCSLARFLMSLHQNSLATA--STQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP 381 (486)
Q Consensus 304 qKrNP~~~E~~~~~a~~~~g~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~ 381 (486)
|||||+.+|+++++++++.|.+++++... ... ++++|+
T Consensus 282 qK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~----------------------------~~~rd~------------ 321 (614)
T PRK12308 282 QKKNPDALELIRGKTGRVYGALAGMMMTVKALPL----------------------------AYNKDM------------ 321 (614)
T ss_pred CccCCcHHHHHHHHHHHHhhHHHHHHHHHcCCch----------------------------hhccch------------
Confidence 99999999999999999999998887542 112 233333
Q ss_pred ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319 382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM 461 (486)
Q Consensus 382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L 461 (486)
|+ -|..+++++.++..++.++..++++++||++||++++ ..|+++++++|+.|
T Consensus 322 --------------------~~-----~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~--~~g~~~a~~la~~L 374 (614)
T PRK12308 322 --------------------QE-----DKEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAA--KQGYANATELADYL 374 (614)
T ss_pred --------------------hh-----hHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHH--HcCHHHHHHHHHHH
Confidence 11 2568999999999999999999999999999999996 45789999999999
Q ss_pred HHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 462 VKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 462 ~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
+++|+|||+||++|+++++.+.++
T Consensus 375 ~~~g~~~r~Ah~~v~~~v~~a~~~ 398 (614)
T PRK12308 375 VAKGIPFREAHHIVGVAVVGAIAK 398 (614)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998664
No 85
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.90 E-value=4.6e-24 Score=217.46 Aligned_cols=132 Identities=26% Similarity=0.391 Sum_probs=114.5
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcC-CCC---CCCcc-cccccc
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAG-FNS---SHIIT-GQTYSR 76 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LG-f~~---~~~~~-~av~~R 76 (486)
.|.+.|.||.+|++++.++++.. +++ .++.+|+.++ +|+ .+++++++.|| |.. +..+| +++++|
T Consensus 174 ~~~~~l~r~~~rL~~~~~~~~~~-~lg-ga~g~gt~~~--~~~-------~~~~~~~~~L~~~~~l~~~~~~~~~~~~~r 242 (312)
T PF00206_consen 174 AWADELARDLERLEEARKRLNVS-PLG-GAVGAGTSLG--IDR-------EFQERVAEELGEFTGLGVPAPNWHDAVSSR 242 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEE-ETT-TTTTTSSHTT--SHH-------HHHHHHHHHHHHHHCSTEECSSHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhHhHHHHH-hcc-CCCccccccc--cCc-------chhhhHHhhhhhhhhcccchhhcccccccc
Confidence 68999999999999999999853 342 3566777775 664 23458999999 776 55555 799999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHH
Q psy14319 77 KVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMS 144 (486)
Q Consensus 77 D~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g 144 (486)
|+++++++++++++++++|||+|+++|++ ++++.++++.+++|||+|||||||+.+|+++++|+++.|
T Consensus 243 d~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~v~G 312 (312)
T PF00206_consen 243 DRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEGQVGSSIMPHKRNPVILENIRGLARQVIG 312 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGSSSCSSSSTTCEETHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCccCCCCCCCHHHHHHHHhhhcCcC
Confidence 99999999999999999999999999997 999999998888899999999999999999999999987
No 86
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.90 E-value=3e-23 Score=214.34 Aligned_cols=153 Identities=23% Similarity=0.170 Sum_probs=131.3
Q ss_pred CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319 206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284 (486)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss- 284 (486)
++|..|+.. ..|+.++.+++++++.|||..+ + .|+++||++++++++++.++++++|||+||++|++
T Consensus 194 lGGAvGt~~---------~~~~~~~~~~~~~a~~LGl~~~-~--~~~~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s~ 261 (351)
T PRK05975 194 FGGAAGTLE---------KLGGKAAAVRARLAKRLGLEDA-P--QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQA 261 (351)
T ss_pred CccHhccCc---------cCCCcHHHHHHHHHHHhCcCCC-c--chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566677642 2456678999999999999754 2 46799999999999999999999999999999998
Q ss_pred hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccC
Q psy14319 285 MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHG 364 (486)
Q Consensus 285 ~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g 364 (486)
=||+.+|+ ++|||||||||||+.+|+++++++.+.+...... .++..|+|||.+.|..
T Consensus 262 egev~~~~---~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~~~-~~~~~~~er~~~~~~~------------------ 319 (351)
T PRK05975 262 GDEISLSG---GGGSSAMPHKQNPVAAETLVTLARFNATQVSGLH-QALVHEQERSGAAWTL------------------ 319 (351)
T ss_pred CCcccCCC---CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHHHH-hcccchhccCCchHHH------------------
Confidence 37888875 4999999999999999999999999999987766 4578999999876531
Q ss_pred CcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCee
Q psy14319 365 KENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVV 436 (486)
Q Consensus 365 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v 436 (486)
+|..+++++.++..++..+..++++|++
T Consensus 320 --------------------------------------------e~~~lp~~~~~~~~~l~~~~~ll~~l~~ 347 (351)
T PRK05975 320 --------------------------------------------EWMILPQMVAATGAALRLALELAGNIRR 347 (351)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 5789999999999999999999998864
No 87
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.89 E-value=2.2e-22 Score=202.85 Aligned_cols=205 Identities=15% Similarity=0.177 Sum_probs=164.0
Q ss_pred HHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCC--CCccccccccCccHHHHHHHHHHHHHHHHHH
Q psy14319 197 PKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFT--SSHIITGQTYSRKVDVIVTGVLSSLGASIHK 274 (486)
Q Consensus 197 ~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~--~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~r 274 (486)
.+.++++....-+.||.. +....=...+.+++++..|++ .+.+..+++++-|.+++++++|..++..|+|
T Consensus 220 ~~~l~evNlGgTAiGTGi--------Na~~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsK 291 (471)
T COG1027 220 AELLLEVNLGGTAIGTGI--------NAPKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSK 291 (471)
T ss_pred HHHHHhhcCCceeeccCc--------CCChhHHHHHHHHHHHHhCCCCccchhHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 355555554555666643 333333567778899988776 4447888999999999999999999999999
Q ss_pred HHHHHHHHhh-----hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCC
Q psy14319 275 LATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFP 349 (486)
Q Consensus 275 la~Dl~l~ss-----~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~ 349 (486)
+|+||||++| ++||.+ |+.|+||||||.|+||+.+|.+.+.|..++|+..++.+++..+.+|.
T Consensus 292 I~NDlRLLsSGPr~Gl~EI~L--P~~Q~GSSIMPgKVNPVipEvvnQvcf~ViGnD~tit~AaeaGQLqL---------- 359 (471)
T COG1027 292 ICNDLRLLSSGPRAGLNEINL--PAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQL---------- 359 (471)
T ss_pred HhhhhhhhccCCccCcccccC--CCCCCCCCCCCCCcCchhHHHHHHHHHHHhcchHHHHHHHHhcchhh----------
Confidence 9999999999 899996 57899999999999999999999999999999999988865444332
Q ss_pred CccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHh
Q psy14319 350 TKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQN 429 (486)
Q Consensus 350 ~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~ 429 (486)
+++.|.+.+ ..+.++..+..++..+..+
T Consensus 360 --------------------------------------NvmePvI~~--------------~l~~Si~iL~na~~~l~ek 387 (471)
T COG1027 360 --------------------------------------NVMEPVIAY--------------ALFESISILTNACRNLREK 387 (471)
T ss_pred --------------------------------------hhhhHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 556677653 3677778888899999999
Q ss_pred chhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy14319 430 VLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSH 480 (486)
Q Consensus 430 ~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~ 480 (486)
|++||++|+++|+++++.+.|. +.+|.+. +++..+-++.+++..
T Consensus 388 cI~gItaN~e~C~~~v~nSigi------vTaLnp~-iGy~~~~~iaK~a~~ 431 (471)
T COG1027 388 CIDGITANEERCEEYVENSIGI------VTALNPY-IGYENAAIIAKEALE 431 (471)
T ss_pred HhhhcccCHHHHHHHHHhhhHH------HHhhccc-ccchHHHHHHHHHHH
Confidence 9999999999999999988764 3477788 667777666666543
No 88
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.2e-21 Score=197.69 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=158.8
Q ss_pred hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCccc-ccchhhhhhhhhhhhHHHHHHcCCC--CCCCccccccccc
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYS-RKVDVIVTGVLSSLGASIHKKAGFN--SSHIITGQTYSRK 77 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~-r~~d~~~~Gt~a~~~~~~a~~LGf~--~~~~~~~av~~RD 77 (486)
||.-++.||..|+.+..+++-+. +| |...-+|-.-+ .+.... -..+++..|+. ...+..+++++.|
T Consensus 204 Afa~~l~ed~~ri~~~~~~l~evNlG--gTAiGTGiNa~~~Y~~~v--------v~~l~evtg~~~~~A~~Lieatq~~~ 273 (471)
T COG1027 204 AFAVALKEDIKRIYRAAELLLEVNLG--GTAIGTGINAPKGYIELV--------VKKLAEVTGLPLVPAENLIEATQDTG 273 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC--ceeeccCcCCChhHHHHH--------HHHHHHHhCCCCccchhHHHHHhccc
Confidence 78999999999999999998763 55 44333553321 122221 13788887765 4456779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q psy14319 78 VDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLAT 152 (486)
Q Consensus 78 ~~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~ 152 (486)
.++++.+++..++..|+|+|+||+|++| ++|+..| +.|.||||||.|.||+++|.+.+.|..|.|+..++.+.
T Consensus 274 afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP--~~Q~GSSIMPgKVNPVipEvvnQvcf~ViGnD~tit~A 351 (471)
T COG1027 274 AFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMA 351 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCC--CCCCCCCCCCCCcCchhHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999999999999999997 9999986 57999999999999999999999999999999988888
Q ss_pred hccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319 153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS 202 (486)
Q Consensus 153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~ 202 (486)
+-.++++.+.-++.+....+..+..+..+|..+..+|++||++|+++|++
T Consensus 352 aeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~ 401 (471)
T COG1027 352 AEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEE 401 (471)
T ss_pred HHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHH
Confidence 77888888888888777777777778889999999999999999999987
No 89
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=99.84 E-value=3.2e-20 Score=187.82 Aligned_cols=188 Identities=19% Similarity=0.192 Sum_probs=161.4
Q ss_pred hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhH----HHHHHcC--CCCCCCccccccc
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGA----SIHKKAG--FNSSHIITGQTYS 75 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~----~~a~~LG--f~~~~~~~~av~~ 75 (486)
.|..+|....+|++.....+.+. ..||..--+|=+-+ ..|++ .++++-| |...+|.+.+.+.
T Consensus 202 Gy~~ql~~~~~~i~~~l~~l~eL-AiGGTAVGTGlNa~-----------p~f~ekva~~i~~~TG~~F~~a~NkF~al~~ 269 (462)
T COG0114 202 GYAAQLEHALERIEASLPHLYEL-AIGGTAVGTGLNAH-----------PEFGEKVAEELAELTGLPFVTAPNKFEALAA 269 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-ccCCcccccCcCCC-----------ccHHHHHHHHHHHHhCCCcccCCcHHHHHhc
Confidence 58899999999999998888763 44343333443222 23455 4555544 6677788899999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy14319 76 RKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSL 150 (486)
Q Consensus 76 RD~~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l 150 (486)
+|.++++..+|..++..|.|||+||++|.| ++||..| +.++||||||.|.||..+|.+...|.+|+|+..++.
T Consensus 270 hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lP--enePGSSIMPGKVNPtq~EA~tmv~~QV~Gnd~ai~ 347 (462)
T COG0114 270 HDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIA 347 (462)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccC--CCCCCccCCCCCCCchhHHHHHHHHHHHHcchHHHH
Confidence 999999999999999999999999999997 9999986 679999999999999999999999999999999988
Q ss_pred HhhccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319 151 ATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203 (486)
Q Consensus 151 ~~~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~ 203 (486)
+.+..+.||.++..+.+-++.+.++-.+++++..+...|+.||++|+++|++.
T Consensus 348 ~ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~ 400 (462)
T COG0114 348 FAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKEL 400 (462)
T ss_pred HhhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHH
Confidence 88888999999999998899998898999999999999999999999999984
No 90
>KOG1317|consensus
Probab=99.82 E-value=1.4e-20 Score=185.23 Aligned_cols=207 Identities=17% Similarity=0.186 Sum_probs=161.5
Q ss_pred ccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCC--CCccccccccCccHHHHHHHHHHHHHHH
Q psy14319 194 VVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFT--SSHIITGQTYSRKVDVIVTGVLSSLGAS 271 (486)
Q Consensus 194 ~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~--~a~~~~~~~~~rd~~~e~~~~l~~~~~~ 271 (486)
.---.|+.++....-++|+.+.+ --.-...+.+.+++..|++ .+.|.+.+.+.||..+|+.++|..++.+
T Consensus 240 ~~~lpr~y~LA~GGTAVGTGLNT--------r~GFaeK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~S 311 (487)
T KOG1317|consen 240 AATLPRLYQLAQGGTAVGTGLNT--------RKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVS 311 (487)
T ss_pred HhhhhHHHHHhcCCccccccccc--------cccHHHHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHHHH
Confidence 33334566655566677776543 2233688899999987776 3447889999999999999999999999
Q ss_pred HHHHHHHHHHHhh-----hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCC
Q psy14319 272 IHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSAN 346 (486)
Q Consensus 272 l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~ 346 (486)
|.||++|||++.| +||+.+ |+..+||||||.|+||..||.+...|.+++|+...+...
T Consensus 312 lmKianDIRfLGSGPRcGlgEL~L--PENEPGSSIMPGKVNPTQcEamTmvcaQVMGN~vAvtvg--------------- 374 (487)
T KOG1317|consen 312 LMKIANDIRFLGSGPRCGLGELML--PENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVG--------------- 374 (487)
T ss_pred HHHHhhhhhhccCCCCCCcccccc--CCCCCCcccCCCCCCcHHHHHHHHHHHHHhcCceEEEec---------------
Confidence 9999999999998 889885 577899999999999999999999999999998755332
Q ss_pred CCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHH
Q psy14319 347 RFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLIT 426 (486)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~ 426 (486)
..|.+||. +++.|... + +.|..+-.+++++..+
T Consensus 375 ------------------GsnGhFEL---------------NVFKP~i~--------~------nvL~SirLl~D~~~sF 407 (487)
T KOG1317|consen 375 ------------------GSNGHFEL---------------NVFKPLIA--------S------NVLHSIRLLADASVSF 407 (487)
T ss_pred ------------------ccCceeEE---------------ecchHHHH--------H------HHHHHHHHhhhhhhhh
Confidence 22333333 45555553 2 3778888899999999
Q ss_pred HHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q psy14319 427 LQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLS 479 (486)
Q Consensus 427 ~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~ 479 (486)
..+|+.||+.|++|+.+.+..+. ++ +.+|-++ ++++.|-.+.+.+-
T Consensus 408 ~~nCV~GI~aN~erI~kll~eSL--ML----VTALNPh-IGYD~aAkiAKtAh 453 (487)
T KOG1317|consen 408 TKNCVVGIEANKERIAKLLNESL--ML----VTALNPH-IGYDNAAKIAKTAH 453 (487)
T ss_pred hhhhhhcccCCHHHHHHHHHhhh--hh----hhccCCc-cCchhHHHHHHHHh
Confidence 99999999999999999987764 32 3466777 77888877766543
No 91
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.78 E-value=3.3e-19 Score=181.81 Aligned_cols=93 Identities=35% Similarity=0.507 Sum_probs=82.2
Q ss_pred HHHHHHHHHcC-CCC---Cc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCC
Q psy14319 231 ALDRLVTKKAG-FTS---SH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMA 303 (486)
Q Consensus 231 ~i~~~lA~~LG-f~~---a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMP 303 (486)
.+.+.+++.|| |.. +. +..+++++||++++++++++.++.+++|||+||++|++ +|++.+|++.+++||||||
T Consensus 213 ~~~~~~~~~L~~~~~l~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~~~GSS~MP 292 (312)
T PF00206_consen 213 EFQERVAEELGEFTGLGVPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEGQVGSSIMP 292 (312)
T ss_dssp HHHHHHHHHHHHHHCSTEECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGSSSCSSSST
T ss_pred chhhhHHhhhhhhhhcccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCccCC
Confidence 44446666666 432 32 56678899999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHH
Q psy14319 304 YKRNPMRSERLCSLARFLMS 323 (486)
Q Consensus 304 qKrNP~~~E~~~~~a~~~~g 323 (486)
|||||+.+|+++++|++++|
T Consensus 293 ~K~NP~~~E~i~~~a~~v~G 312 (312)
T PF00206_consen 293 HKRNPVILENIRGLARQVIG 312 (312)
T ss_dssp TCEETHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhhcCcC
Confidence 99999999999999999987
No 92
>KOG1317|consensus
Probab=99.67 E-value=1.2e-16 Score=157.72 Aligned_cols=190 Identities=19% Similarity=0.215 Sum_probs=148.3
Q ss_pred hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCC--CCCCcccccccccH
Q psy14319 2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFN--SSHIITGQTYSRKV 78 (486)
Q Consensus 2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~--~~~~~~~av~~RD~ 78 (486)
.|.+-+..-..|++....|+-.. +| |..--+|-.-.+..+ --...+++++-|+- ..+|-+.+.+.||.
T Consensus 227 gY~qQ~~ngl~Rv~~~lpr~y~LA~G--GTAVGTGLNTr~GFa-------eK~a~~va~ltgLpFvtApNkFEALAahDA 297 (487)
T KOG1317|consen 227 GYVQQVTNGLQRVAATLPRLYQLAQG--GTAVGTGLNTRKGFA-------EKIAARVAELTGLPFVTAPNKFEALAAHDA 297 (487)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHhcC--CccccccccccccHH-------HHHHHHHHHHhCCCceecccHHHHHHhhhh
Confidence 36666666667777766666542 33 222112222111111 11234788887754 45667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319 79 DVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA 153 (486)
Q Consensus 79 ~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~ 153 (486)
.+|+..+|..++.+|-||++||+++.| ++|+.+| +..+||||||.|.||.-||.+...|.+|+|+...+...+
T Consensus 298 ~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LP--ENEPGSSIMPGKVNPTQcEamTmvcaQVMGN~vAvtvgG 375 (487)
T KOG1317|consen 298 MVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLP--ENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVGG 375 (487)
T ss_pred HHHhcccHHHHHHHHHHHhhhhhhccCCCCCCccccccC--CCCCCcccCCCCCCcHHHHHHHHHHHHHhcCceEEEecc
Confidence 999999999999999999999999996 8999876 578999999999999999999999999999987544556
Q ss_pred ccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319 154 STQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS 202 (486)
Q Consensus 154 ~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~ 202 (486)
..+.||.+.....+....+..+-.+++++..+-..|+.||+.|+||+.+
T Consensus 376 snGhFELNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~GI~aN~erI~k 424 (487)
T KOG1317|consen 376 SNGHFELNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAK 424 (487)
T ss_pred cCceeEEecchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCHHHHHH
Confidence 6778898888887777788888889999999999999999999999976
No 93
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.62 E-value=3.8e-15 Score=144.68 Aligned_cols=108 Identities=34% Similarity=0.335 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14319 78 VDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST 155 (486)
Q Consensus 78 ~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~ 155 (486)
++++++..++.++.+++||++|+++|++ ++++.+|+...++|||+||||+||+.+|++++.+..+.|...... ....
T Consensus 121 ~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~-~~~~ 199 (231)
T cd01594 121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVL-TALK 199 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHH-HHHh
Confidence 8899999999999999999999999996 778888775578999999999999999999999999999987644 4455
Q ss_pred ccccCCCchhhHhhhchHHHHHHHHHHHHHH
Q psy14319 156 QWMERTLDDSANRRLTLSESFLTTDCLLITL 186 (486)
Q Consensus 156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~ 186 (486)
.++++|.+++...+..+++.+..+..++..+
T Consensus 200 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 230 (231)
T cd01594 200 GGPERDNEDSPSMREILADSLLLLIDALRLL 230 (231)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 6688899998888888888888887776553
No 94
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.41 E-value=8.8e-13 Score=128.09 Aligned_cols=76 Identities=33% Similarity=0.385 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHh
Q psy14319 257 VDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA 332 (486)
Q Consensus 257 ~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~ 332 (486)
++++++..++.++.+++|+++|+++|++ ++++.+|+...++|||+||||+||+.+|++++++..+.|....++...
T Consensus 121 ~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~ 198 (231)
T cd01594 121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTAL 198 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8899999999999999999999999998 788887766579999999999999999999999999999998887653
No 95
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=98.59 E-value=6.1e-08 Score=77.53 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 451 FMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 451 ~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
|++||++|+.||++|+|||+||++|+++|+.|.++
T Consensus 1 f~~ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~ 35 (70)
T PF14698_consen 1 FSTATDLADYLVRKGIPFREAHHIVGRLVRLAEEE 35 (70)
T ss_dssp TGGHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 67999999999999999999999999999998764
No 96
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=97.69 E-value=4.7e-05 Score=65.88 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=43.2
Q ss_pred HHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy14319 426 TLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSH 480 (486)
Q Consensus 426 ~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~ 480 (486)
-+...+..|.||+++|.+.++.+|. ++||.+...|.+.|+ .++||.++++.+
T Consensus 29 s~lkGl~Kl~vn~~~l~~dL~~nWe-VlaEpIQTvmRr~g~--~~pYE~LK~lTR 80 (115)
T PF08328_consen 29 SLLKGLGKLEVNEERLAEDLDENWE-VLAEPIQTVMRRYGI--PNPYEKLKELTR 80 (115)
T ss_dssp HHHHHHHTEEE-HHHHHHHHCT-GG-GGHHHHHHHHHHTT---SSHHHHHHHHHT
T ss_pred HHHHHHhcccCCHHHHHHHHHHCHH-HHHHHHHHHHHHcCC--CCHHHHHHHHHc
Confidence 3455788899999999999999986 899999999999887 679999999876
No 97
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=97.10 E-value=0.00067 Score=55.66 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319 449 LPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485 (486)
Q Consensus 449 ~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~ 485 (486)
.|++.||.++++|+++|+++++||++|.+++++|.++
T Consensus 1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~ 37 (81)
T PF10397_consen 1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWEN 37 (81)
T ss_dssp TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998653
No 98
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=85.40 E-value=1.8 Score=37.79 Aligned_cols=72 Identities=17% Similarity=0.063 Sum_probs=49.2
Q ss_pred cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHH
Q psy14319 157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLV 236 (486)
Q Consensus 157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~l 236 (486)
.++||+.+|...|+ +.-++..+..+..-+.+-++.|.||+++|.+.. +..|.-..+-..-+
T Consensus 2 R~QRDLtDSTvlRN-iGva~~~sliA~~s~lkGl~Kl~vn~~~l~~dL------------------~~nWeVlaEpIQTv 62 (115)
T PF08328_consen 2 RWQRDLTDSTVLRN-IGVAFGHSLIAYKSLLKGLGKLEVNEERLAEDL------------------DENWEVLAEPIQTV 62 (115)
T ss_dssp STTB-THHHHHHTT-HHHHHHHHHHHHHHHHHHHHTEEE-HHHHHHHH------------------CT-GGGGHHHHHHH
T ss_pred cccccchHHHHHHh-hhHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH------------------HHCHHHHHHHHHHH
Confidence 46899999988766 455666666677777888999999999998732 23333344555567
Q ss_pred HHHcCCCCCcc
Q psy14319 237 TKKAGFTSSHI 247 (486)
Q Consensus 237 A~~LGf~~a~~ 247 (486)
.+..|++.|+.
T Consensus 63 mRr~g~~~pYE 73 (115)
T PF08328_consen 63 MRRYGIPNPYE 73 (115)
T ss_dssp HHHTT-SSHHH
T ss_pred HHHcCCCCHHH
Confidence 88999998763
No 99
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=22.87 E-value=3e+02 Score=27.80 Aligned_cols=55 Identities=18% Similarity=0.065 Sum_probs=41.3
Q ss_pred HhchhCCeeCHHHHHHHHhccCC-----hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q psy14319 428 QNVLEGLVVYPKVIQRHIDQELP-----FMATENIIMAMVKAGGDRQVCHEKIRVLSHQA 482 (486)
Q Consensus 428 ~~~l~~l~v~~~~m~~~l~~~~~-----~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a 482 (486)
..+=.-.+|+++.|......+.+ |...|.++++-++.|+|+++|.+.+.+.+.-+
T Consensus 149 ~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Ga 208 (266)
T COG0345 149 SAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGA 208 (266)
T ss_pred HhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33444468888888876655432 45789999999999999999999998876543
No 100
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.01 E-value=3.4e+02 Score=26.03 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=35.5
Q ss_pred eeCHHHHHHHHhccCC-----hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q psy14319 435 VVYPKVIQRHIDQELP-----FMATENIIMAMVKAGGDRQVCHEKIRVLSHQAG 483 (486)
Q Consensus 435 ~v~~~~m~~~l~~~~~-----~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~ 483 (486)
.++++.+......... +.+.+.+.+.+++.|+++++|.+.+..+..-+.
T Consensus 161 ~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~ 214 (245)
T PRK07634 161 LCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSA 214 (245)
T ss_pred EECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4667666554433322 246778888889999999999999999877553
Done!