RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14319
(486 letters)
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 268 bits (688), Expect = 3e-85
Identities = 110/190 (57%), Positives = 127/190 (66%), Gaps = 36/190 (18%)
Query: 9 GDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHI 68
GD DKV+ALD LVTKKAGF + +TGQTYSRKVD+ V LSSLGA+ HK
Sbjct: 198 GDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSSLGATAHK--------- 248
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRN 128
+ATD+RLLA++KE+EEPFE QIGSSAM YKRN
Sbjct: 249 ---------------------------IATDIRLLANLKEVEEPFEKGQIGSSAMPYKRN 281
Query: 129 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQN 188
PMRSER CSLAR LM+L N+ TASTQW ERTLDDSANRR+ + E+FL D +LITLQN
Sbjct: 282 PMRSERCCSLARHLMNLASNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQN 341
Query: 189 VLEGLVVYPK 198
+ EGLVVYPK
Sbjct: 342 ISEGLVVYPK 351
Score = 237 bits (606), Expect = 5e-73
Identities = 91/124 (73%), Positives = 103/124 (83%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
GD DKV+ALD LVTKKAGF + +TGQTYSRKVD+ V LSSLGA+ HK+ATD+RLLA
Sbjct: 198 GDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLA 257
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
++KE+EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L N+ TASTQW ERTLDD
Sbjct: 258 NLKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWFERTLDD 317
Query: 344 SANR 347
SANR
Sbjct: 318 SANR 321
Score = 145 bits (367), Expect = 1e-38
Identities = 56/74 (75%), Positives = 62/74 (83%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
+ E+FL D +LITLQN+ EGLVVYPKVI+RHI QELPFMATENIIMA VKAGGDRQ
Sbjct: 324 AIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDA 383
Query: 472 HEKIRVLSHQAGAQ 485
HE+IRVLSHQA A
Sbjct: 384 HERIRVLSHQAAAV 397
Score = 65.4 bits (160), Expect = 2e-11
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 359 QVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 398
VKQ G +NDL++RI+ D YF PI +++ LLDPK+F GR
Sbjct: 397 VVKQEGGDNDLIERIKNDAYFKPIWDELDALLDPKTFIGR 436
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 171 bits (435), Expect = 1e-48
Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 59 KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFEST 116
+K G IT Q R + L+ + ++ K+ATD+RLL + E+EEPFE
Sbjct: 198 EKLGLKV-PPITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKG 256
Query: 117 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESF 176
Q+GSS M +KRNP+ SE + LAR + +L QW ER L DS+ R L ++F
Sbjct: 257 QVGSSTMPHKRNPIDSENIEGLARLVRAL-AAPALENLVQWHERDLSDSSVERNILPDAF 315
Query: 177 LTTDCLLITLQNVLEGLVVYPK 198
L D L LQ +LEGLVV P+
Sbjct: 316 LLLDAALSRLQGLLEGLVVNPE 337
Score = 146 bits (371), Expect = 2e-39
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284
G K ++ V +K G IT Q R + L+ + ++ K+ATD+RLL
Sbjct: 186 GPKGPEVEERVAEKLGLKV-PPITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRT 244
Query: 285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
+ E+EEPFE Q+GSS M +KRNP+ SE + LAR + +L QW ER L D
Sbjct: 245 EIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRAL-AAPALENLVQWHERDLSD 303
Query: 344 SANR 347
S+
Sbjct: 304 SSVE 307
Score = 86.0 bits (214), Expect = 3e-18
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L ++FL D L LQ +LEGLVV P+ ++R++D + +E ++MA+ K G RQ
Sbjct: 310 ILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEA 369
Query: 472 HEKIRVLSH 480
+E ++ ++
Sbjct: 370 YELVKEENY 378
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 145 bits (367), Expect = 1e-40
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 85 VLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 142
VL+ + S+ K A ++RLL + E+EEPF Q GSSAM +KRNP+ SER+ LAR L
Sbjct: 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVL 81
Query: 143 MSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
S + + W ER L S+ R+ L ++FL D +L N+LE LVV+P+
Sbjct: 82 RS-YLVTALENVPLWHERDLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPE 136
Score = 111 bits (280), Expect = 2e-28
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 264 VLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 321
VL+ + S+ K A ++RLL + E+EEPF Q GSSAM +KRNP+ SER+ LAR L
Sbjct: 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVL 81
Query: 322 MSLHQNSLATASTQWMERTLDDSANR 347
S + + W ER L S+
Sbjct: 82 RS-YLVTALENVPLWHERDLSHSSAE 106
Score = 88.2 bits (219), Expect = 5e-20
Identities = 28/70 (40%), Positives = 47/70 (67%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
L ++FL D +L N+LE LVV+P+ I+R++D+ L F+ATE +++ +V+ G R+ H
Sbjct: 110 LPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAH 169
Query: 473 EKIRVLSHQA 482
E IR + +A
Sbjct: 170 ELIREKAMEA 179
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 147 bits (374), Expect = 2e-39
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 126
I+ Q R L+ L S+ K A D+RLL + E+EEPF Q+GSSAM +K
Sbjct: 216 ISTQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHK 275
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
RNP+ SE + LAR +L ++L W ER L DS+ R+ L ++F+ D L L
Sbjct: 276 RNPIDSENVTGLARVARAL-VSTLLENLVLWHERDLTDSSVERVILPDAFIAADGALNRL 334
Query: 187 QNVLEGLVVYPK 198
NVLEGL V P+
Sbjct: 335 LNVLEGLEVNPE 346
Score = 123 bits (310), Expect = 1e-30
Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM 285
GD ++ V +K G I+ Q R L+ L S+ K A D+RLL
Sbjct: 195 GDLGAEVEERVAEKLGLKP-APISTQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRT 253
Query: 286 K--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
+ E+EEPF Q+GSSAM +KRNP+ SE + LAR +L ++L W ER L D
Sbjct: 254 EVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARAL-VSTLLENLVLWHERDLTD 312
Query: 344 SANR 347
S+
Sbjct: 313 SSVE 316
Score = 78.4 bits (194), Expect = 1e-15
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L ++F+ D L L NVLEGL V P+ ++R++D L +A+E +++A+ K G R+
Sbjct: 319 ILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEA 378
Query: 472 HEKIRVLSHQAGAQ 485
HE +R + +A Q
Sbjct: 379 HELVREKAMKAWEQ 392
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 132 bits (335), Expect = 5e-34
Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA--HMKEIEEPFESTQIGSSAMAYK 126
I+ Q R + L+ L ++ K A D+RLL E+EEPF Q+GSSAM +K
Sbjct: 215 ISTQIEPRDRHAELLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHK 274
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
RNP+ E +C LAR + S+ +L W ER L DS+ R+ L +SF+ D +L T
Sbjct: 275 RNPIDFENVCGLARVIRSVLSPALENV-PLWHERDLTDSSVERIILPDSFILADIMLKTT 333
Query: 187 QNVLEGLVVYPK 198
V++ LVV P+
Sbjct: 334 LKVVKKLVVNPE 345
Score = 109 bits (275), Expect = 5e-26
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA-- 283
V+ ++ VT+ G I T Q R + L+ L ++ K A D+RLL
Sbjct: 194 YPLVEEVEERVTEFLGLKPVPIST-QIEPRDRHAELLDALALLATTLEKFAVDIRLLQRT 252
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
E+EEPF Q+GSSAM +KRNP+ E +C LAR + S+ +L W ER L D
Sbjct: 253 EHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALENV-PLWHERDLTD 311
Query: 344 SA 345
S+
Sbjct: 312 SS 313
Score = 78.9 bits (195), Expect = 8e-16
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L +SF+ D +L T V++ LVV P+ I R+++ L +A+E +++A+V+ G R+
Sbjct: 318 ILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEA 377
Query: 472 HEKIRVLSHQA 482
+E +R L+ A
Sbjct: 378 YEIVRELAMGA 388
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 123 bits (311), Expect = 1e-31
Identities = 45/141 (31%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 59 KKAGFNSSHIITGQ-TYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFES 115
+ GF + Q R V + L+ L S+ K+A DLRLL+ E+E P
Sbjct: 187 ELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAK 246
Query: 116 TQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSES 175
Q GSS M K NP+ E + LA ++ L DS R L +S
Sbjct: 247 -QPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGP-LEDNVDSPVEREALPDS 304
Query: 176 FLTTDCLLITLQNVLEGLVVY 196
F D L L VLEGL V
Sbjct: 305 FDLLDAALRLLTGVLEGLEVN 325
Score = 104 bits (263), Expect = 5e-25
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 5/122 (4%)
Query: 229 VKALDRLVTKKAGFTSSHIITGQ-TYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--M 285
V + GF + Q R V + L+ L S+ K+A DLRLL+
Sbjct: 178 PPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEF 237
Query: 286 KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
E+E P Q GSS M K NP+ E + LA ++ L DS
Sbjct: 238 GEVELPDAK-QPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGP-LEDNVDSP 295
Query: 346 NR 347
Sbjct: 296 VE 297
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 110 bits (277), Expect = 1e-26
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 85 VLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 142
L+ + +++ K+AT++R L + E+EEPF Q GSSAM +KRNP+ SE +C LAR +
Sbjct: 222 TLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVI 281
Query: 143 MSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKE 199
S +L W ER + S+ R+ L ++ + D +L + VLE LVVYP+
Sbjct: 282 RSNVIPALENV-ALWHERDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPEN 337
Score = 79.1 bits (196), Expect = 6e-16
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 264 VLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 321
L+ + +++ K+AT++R L + E+EEPF Q GSSAM +KRNP+ SE +C LAR +
Sbjct: 222 TLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVI 281
Query: 322 MSLHQNSLATASTQWMERTLDDSAN 346
S +L W ER + S+
Sbjct: 282 RSNVIPALENV-ALWHERDISHSSV 305
Score = 53.7 bits (130), Expect = 1e-07
Identities = 17/65 (26%), Positives = 40/65 (61%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L ++ + D +L + VLE LVVYP+ ++R+++ + ++ +++A+V+ G R+
Sbjct: 309 ILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEA 368
Query: 472 HEKIR 476
+E ++
Sbjct: 369 YEIVQ 373
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 93.9 bits (234), Expect = 1e-20
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 126
I+ Q R L+++ ++ K+ ++R L + E+EE F Q+GSS M +K
Sbjct: 221 ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHK 280
Query: 127 RNPMRSERLCSLARFLMSL----HQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
RNP+ SE++C LAR + S N + W ER L +S+ R+ ES + TD +
Sbjct: 281 RNPITSEQICGLARVVRSNVEPALLN-----NPLWDERDLTNSSCERIIFPESCVLTDHI 335
Query: 183 LITLQNVLEGLVVYPK 198
L + VLEGL P+
Sbjct: 336 LKLMIKVLEGLRFNPE 351
Score = 73.1 bits (180), Expect = 8e-14
Identities = 63/244 (25%), Positives = 94/244 (38%), Gaps = 79/244 (32%)
Query: 248 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 305
I+ Q R L+++ ++ K+ ++R L + E+EE F Q+GSS M +K
Sbjct: 221 ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHK 280
Query: 306 RNPMRSERLCSLARFLMSL----HQNSLATASTQWMERTL-DDSANR--FPTKSVFSCVT 358
RNP+ SE++C LAR + S N + W ER L + S R FP SCV
Sbjct: 281 RNPITSEQICGLARVVRSNVEPALLN-----NPLWDERDLTNSSCERIIFPE----SCV- 330
Query: 359 QVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFL 418
L D IL M +L+ F PE R L
Sbjct: 331 ----------LTDH---------ILKLMIKVLEGLRFN---PENIR------RNL----- 357
Query: 419 TTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVL 478
+ +GL+ MA E +++ + K G RQ HE +R
Sbjct: 358 ----------ELTKGLI----------------MA-EAVMIELAKRGMGRQEAHELVRQA 390
Query: 479 SHQA 482
+ +A
Sbjct: 391 AMKA 394
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 87.3 bits (217), Expect = 1e-19
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCS 137
L+ A + K+A DLRLL + E+ EPF Q GSS M K NP+ +E +
Sbjct: 123 AEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRG 182
Query: 138 LARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTD 180
LA ++ L ER +DS + R L++S L
Sbjct: 183 LAGLVIGNLVAVLTALK-GGPERDNEDSPSMREILADSLLLLI 224
Score = 78.4 bits (194), Expect = 2e-16
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCS 316
L+ A + K+A DLRLL + E+ EPF Q GSS M K NP+ +E +
Sbjct: 123 AEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRG 182
Query: 317 LARFLMSLHQNSLATASTQWMERTLDDSAN 346
LA ++ L ER +DS +
Sbjct: 183 LAGLVIGNLVAVLTALK-GGPERDNEDSPS 211
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 85.2 bits (211), Expect = 8e-18
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 8/136 (5%)
Query: 65 SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSA 122
S+ +I Y+R + L+ L +S K+A +R L + E EE F Q GSSA
Sbjct: 210 SNQVIQRDRYAR-----LASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSKGQKGSSA 264
Query: 123 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
M +KRNP+ SE + L R + S +L + W ER + S+ R L ++F+TTD +
Sbjct: 265 MPHKRNPVLSENITGLCRVIRSFATPALENVAL-WHERDISHSSVERFILPDAFITTDFM 323
Query: 183 LITLQNVLEGLVVYPK 198
L L NV+E LVVYP+
Sbjct: 324 LHRLNNVIENLVVYPE 339
Score = 53.6 bits (129), Expect = 1e-07
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 232 LDRLVTKKAGFT----SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK- 286
L+ LV ++ G S+ +I Y+R + L+ L +S K+A +R L +
Sbjct: 194 LEELVCEELGLKPAPVSNQVIQRDRYAR-----LASALALLASSCEKIAVAIRHLQRTEV 248
Query: 287 -EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLD-DS 344
E EE F Q GSSAM +KRNP+ SE + L R + S +L + W ER + S
Sbjct: 249 YEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPALENVAL-WHERDISHSS 307
Query: 345 ANRF 348
RF
Sbjct: 308 VERF 311
Score = 37.4 bits (87), Expect = 0.014
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 469
L ++F+TTD +L L NV+E LVVYP+ + ++++ + ++ +++ + K G R+
Sbjct: 313 LPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSRE 369
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 83.9 bits (208), Expect = 2e-17
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 86 LSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 143
L+ +GAS+ + AT++R L E+EE F Q GSSAM +KRNP+RSERL LAR L
Sbjct: 226 LALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVL- 284
Query: 144 SLHQNSLATASTQ----WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
S A A+ + W ER + S+ R+ L + + +L + ++++ L+VYP+
Sbjct: 285 ----RSYAVAALENVALWHERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPE 339
Score = 65.1 bits (159), Expect = 3e-11
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 265 LSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 322
L+ +GAS+ + AT++R L E+EE F Q GSSAM +KRNP+RSERL LAR L
Sbjct: 226 LALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVL- 284
Query: 323 SLHQNSLATASTQ----WMERTLDDSAN 346
S A A+ + W ER + S+
Sbjct: 285 ----RSYAVAALENVALWHERDISHSSV 308
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 71.2 bits (175), Expect = 3e-13
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 20/123 (16%)
Query: 84 GVLSSLGASIHKLATDLRLLAHMK-----EIEEPFESTQIGSSAMAYKRNPMRSERLCSL 138
GV++S SI +LA ++R H++ E EE F Q GSSAM +KRNP+ +E L L
Sbjct: 230 GVIAS---SIERLAIEIR---HLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGL 283
Query: 139 ARFLMSLHQNSLATASTQ----WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLV 194
AR + S + + W ER + S+ R+ ++ +T D L L V+E LV
Sbjct: 284 ARLV-----RSYVVPAMENVALWHERDISHSSVERMIGPDATITLDFALNRLAGVIEKLV 338
Query: 195 VYP 197
VYP
Sbjct: 339 VYP 341
Score = 58.8 bits (143), Expect = 2e-09
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 263 GVLSSLGASIHKLATDLRLLAHMK-----EIEEPFESTQIGSSAMAYKRNPMRSERLCSL 317
GV++S SI +LA ++R H++ E EE F Q GSSAM +KRNP+ +E L L
Sbjct: 230 GVIAS---SIERLAIEIR---HLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGL 283
Query: 318 ARFLMS 323
AR + S
Sbjct: 284 ARLVRS 289
Score = 31.9 bits (73), Expect = 0.80
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 419 TTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 469
T D L L V+E LVVYP+ + +++++ + ++ +++A+ +AG R+
Sbjct: 322 TLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSRE 372
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 70.7 bits (174), Expect = 4e-13
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLA 139
+ L+ L ++ K+A D+ LL + E+ EPF + GSS M +KRNP+ E + +LA
Sbjct: 229 LASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALA 288
Query: 140 RFLMSLHQNSLATASTQWM----ERTLDDSANRRL---TLSESFLTTDCLLITLQNVLEG 192
R + LA M ER D+ L E FL L + +L G
Sbjct: 289 RRV-----PGLAALLLDAMVQEHER---DAGAWHAEWIALPEIFLLASGALEQAEFLLSG 340
Query: 193 LVVYPK 198
L V
Sbjct: 341 LEVNED 346
Score = 59.2 bits (144), Expect = 2e-09
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 261 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLA 318
+ L+ L ++ K+A D+ LL + E+ EPF + GSS M +KRNP+ E + +LA
Sbjct: 229 LASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALA 288
Query: 319 RFLMSL 324
R + L
Sbjct: 289 RRVPGL 294
Score = 39.1 bits (92), Expect = 0.004
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L E FL L + +L GL V ++ ++D + +E ++MA+ G RQ
Sbjct: 319 ALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLG-RQEA 377
Query: 472 HEKIRVLSHQAGAQ 485
H+ + +A +
Sbjct: 378 HDLVYEACMRAVEE 391
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 66.5 bits (162), Expect = 9e-12
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 85 VLSSLGASIHKLATDLRLLA--HMKEIEEPF-ESTQIGSSAMAYKRNPMRSERLCSLARF 141
V++ + ++ K+AT++R L + E+ E F E +Q+GSS+M K NP+ SE + SL+RF
Sbjct: 236 VINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRF 295
Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVV 195
+ SL T W ER L +SA R T+ + + D +L + +VL L++
Sbjct: 296 IRSLIIPEYEAGVT-WHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLII 348
Score = 55.7 bits (134), Expect = 2e-08
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 264 VLSSLGASIHKLATDLRLLA--HMKEIEEPF-ESTQIGSSAMAYKRNPMRSERLCSLARF 320
V++ + ++ K+AT++R L + E+ E F E +Q+GSS+M K NP+ SE + SL+RF
Sbjct: 236 VINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRF 295
Query: 321 LMSLHQNSLATASTQWMERTLDDSA-NRF--PTKSVF 354
+ SL T W ER L +SA RF P S+
Sbjct: 296 IRSLIIPEYEAGVT-WHERDLTNSALERFTIPYASIL 331
Score = 31.4 bits (71), Expect = 1.2
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
T+ + + D +L + +VL L++ I+R+++ + + +E+I+ A+ +G RQ
Sbjct: 324 TIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESD-DSIMSESIVRALTLSGMPRQDA 382
Query: 472 HEKIRVLSHQA 482
HE +R S +A
Sbjct: 383 HEFVRRASMEA 393
>gnl|CDD|198066 smart00998, ADSL_C, Adenylosuccinate lyase C-terminus.
Adenylosuccinate lyase catalyses two steps in the
synthesis of purine nucleotides: the conversion of
succinylaminoimidazole-carboxamide ribotide into
aminoimidazole-carboxamide ribotide (the fifth step of
de novo IMP biosynthesis); the formation of adenosine
monophosphate (AMP) from adenylosuccinate (the final
step in the synthesis of AMP from IMP). This entry
represents the C-terminal, seven alpha-helical, domain
of adenylosuccinate lyase.
Length = 81
Score = 49.0 bits (118), Expect = 1e-07
Identities = 7/37 (18%), Positives = 21/37 (56%)
Query: 449 LPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485
+ +E +++A+V+ G R+ +E ++ + +A +
Sbjct: 1 GGLIFSERVLLALVEKGLGREEAYELVQRAAMKAWEE 37
Score = 34.3 bits (80), Expect = 0.013
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 368 DLVDRIRADPYFAPILN--QMPTLLDPKSFYGRAPEQ 402
DL + + ADP L+ ++ L DP+ + G A
Sbjct: 40 DLRELLLADPEVTAYLSEEELEELFDPEYYLGHADAI 76
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 50.1 bits (120), Expect = 1e-06
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 79 DVIVT--GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLC 136
D I L+ + ++ K+A D+ LL+ E+ E FE+ GSSAM +KRNP+ + L
Sbjct: 224 DRIAEFGSALALVAGALGKIAGDIALLSQT-EVGEVFEAGGGGSSAMPHKRNPVGAALLA 282
Query: 137 SLARF-----------LMSLHQNSLATASTQWM 158
+ AR L H+ SL +W
Sbjct: 283 AAARRVPGLAATLHAALPQEHERSLGGWHAEWE 315
Score = 50.1 bits (120), Expect = 1e-06
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 258 DVIVT--GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLC 315
D I L+ + ++ K+A D+ LL+ E+ E FE+ GSSAM +KRNP+ + L
Sbjct: 224 DRIAEFGSALALVAGALGKIAGDIALLSQT-EVGEVFEAGGGGSSAMPHKRNPVGAALLA 282
Query: 316 SLARF-----------LMSLHQNSLATASTQWM 337
+ AR L H+ SL +W
Sbjct: 283 AAARRVPGLAATLHAALPQEHERSLGGWHAEWE 315
>gnl|CDD|220731 pfam10397, ADSL_C, Adenylosuccinate lyase C-terminus. This is the
C-terminal seven alpha helices of the structure whose
full length represents the enzyme adenylosuccinate
lyase. This sequence lies C-terminal to the conserved
motif necessary for beta-elimination reactions,
Adenylosuccinate lyase catalyzes two steps in the
synthesis of purine nucleotides: the conversion of
succinylaminoimidazole-carboxamide ribotide into
aminoimidazole-carboxamide ribotide, the eighth step of
the de novo pathway, and the formation of adenosine
monophosphate (AMP) from adenylosuccinate, the second
step in the conversion of inosine monophosphate into
AMP.
Length = 80
Score = 45.1 bits (108), Expect = 2e-06
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 450 PFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485
+ +E +++A+ + G R+ +E ++ + +A +
Sbjct: 1 GLIMSERVLLALAEKGLGREEAYELVQRAAMKAWEE 36
Score = 33.2 bits (77), Expect = 0.035
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 366 ENDLVDRIRADPYFAPILN--QMPTLLDPKSFYGRAPEQ 402
DL + + ADP A L+ ++ L DP + G A
Sbjct: 37 GRDLREVLLADPEVAAYLSEEELDALFDPAYYLGHADAI 75
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 48.5 bits (116), Expect = 4e-06
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 79 DVIVT--GVLSSLGASIHKLATDLRLLAHM-KEIEEPFESTQIGSSAMAYKRNPMRSERL 135
D I +LS + S+ K D+ L+A EI S GSSAM +K+NP+ +E L
Sbjct: 232 DFIADFAHLLSLVTGSLGKFGQDIALMAQAGDEISL---SGGGGSSAMPHKQNPVAAETL 288
Query: 136 CSLARF----LMSLHQ 147
+LARF + LHQ
Sbjct: 289 VTLARFNATQVSGLHQ 304
Score = 48.5 bits (116), Expect = 4e-06
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 258 DVIVT--GVLSSLGASIHKLATDLRLLAHM-KEIEEPFESTQIGSSAMAYKRNPMRSERL 314
D I +LS + S+ K D+ L+A EI S GSSAM +K+NP+ +E L
Sbjct: 232 DFIADFAHLLSLVTGSLGKFGQDIALMAQAGDEISL---SGGGGSSAMPHKQNPVAAETL 288
Query: 315 CSLARF----LMSLHQ 326
+LARF + LHQ
Sbjct: 289 VTLARFNATQVSGLHQ 304
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 41.9 bits (99), Expect = 4e-04
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 234 RLVTKKAGFTSSHIITG----QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA--HMKE 287
L + FT + T R V +G L+ L + K A DLRLL+
Sbjct: 217 LLAKELGFFTGLPVPAPNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGPFGF 276
Query: 288 IEEPFESTQIGSSAMAYKRNPMRSERLCSLAR 319
+E + GSS M K NP + E L A
Sbjct: 277 VELSLPEGEPGSSIMPGKVNPDQLELLRGKAG 308
Score = 41.9 bits (99), Expect = 5e-04
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 84 GVLSSLGASIHKLATDLRLLA--HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLAR 140
G L+ L + K A DLRLL+ +E + GSS M K NP + E L A
Sbjct: 250 GALALLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKVNPDQLELLRGKAG 308
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 41.8 bits (99), Expect = 6e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L +L S+ K+A D+R L + EIE P + GSS M K NP + E
Sbjct: 274 VEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEA 331
Query: 135 LCSLARFLMSLHQNSLATASTQ 156
L +A ++ ++A A +Q
Sbjct: 332 LTMVAAQVIGNDA-AIAFAGSQ 352
Score = 41.8 bits (99), Expect = 6e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L +L S+ K+A D+R L + EIE P + GSS M K NP + E
Sbjct: 274 VEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEA 331
Query: 314 LCSLARFLMSLHQNSLATASTQ 335
L +A ++ ++A A +Q
Sbjct: 332 LTMVAAQVIGNDA-AIAFAGSQ 352
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 40.3 bits (94), Expect = 0.002
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V ++G L +L ++ K+A DLRLL A + E+ P + + GSS M K NP + E
Sbjct: 273 VSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLP--ANEPGSSIMPGKVNPTQCEA 330
Query: 135 LCSLA 139
L LA
Sbjct: 331 LSMLA 335
Score = 40.3 bits (94), Expect = 0.002
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V ++G L +L ++ K+A DLRLL A + E+ P + + GSS M K NP + E
Sbjct: 273 VSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLP--ANEPGSSIMPGKVNPTQCEA 330
Query: 314 LCSLA 318
L LA
Sbjct: 331 LSMLA 335
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 38.8 bits (91), Expect = 0.006
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V V+G L ++ K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 275 VEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLP--AVQPGSSIMPGKVNPVMPE 331
Score = 38.8 bits (91), Expect = 0.006
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V V+G L ++ K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 275 VEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLP--AVQPGSSIMPGKVNPVMPE 331
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 38.2 bits (89), Expect = 0.008
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 79 DVIV--TGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMR 131
D IV G L +L AS+ K+A D+R L + E+ P + GSS M K NP +
Sbjct: 269 DAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIP--ENEPGSSIMPGKVNPTQ 326
Query: 132 SERL 135
E L
Sbjct: 327 CEAL 330
Score = 38.2 bits (89), Expect = 0.008
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 258 DVIV--TGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMR 310
D IV G L +L AS+ K+A D+R L + E+ P + GSS M K NP +
Sbjct: 269 DAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIP--ENEPGSSIMPGKVNPTQ 326
Query: 311 SERL 314
E L
Sbjct: 327 CEAL 330
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 38.3 bits (89), Expect = 0.009
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V+V G L L + K+ DLRLL A + EI P Q GSS M K NP+ E
Sbjct: 273 VMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP--ELQAGSSIMPAKVNPVVPE 329
Score = 38.3 bits (89), Expect = 0.009
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V+V G L L + K+ DLRLL A + EI P Q GSS M K NP+ E
Sbjct: 273 VMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP--ELQAGSSIMPAKVNPVVPE 329
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 38.0 bits (89), Expect = 0.010
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V+V+G L L + K+ DLRLL A + EI P + Q GSS M K NP+ E
Sbjct: 276 VMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNPVIPE 332
Score = 38.0 bits (89), Expect = 0.010
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V+V+G L L + K+ DLRLL A + EI P + Q GSS M K NP+ E
Sbjct: 276 VMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNPVIPE 332
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 36.6 bits (86), Expect = 0.023
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V +G L +L S+ K+A D+R LA + EI P + GSS M K NP + E
Sbjct: 275 VEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLP--ENEPGSSIMPGKVNPTQCE 331
Score = 36.6 bits (86), Expect = 0.023
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V +G L +L S+ K+A D+R LA + EI P + GSS M K NP + E
Sbjct: 275 VEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLP--ENEPGSSIMPGKVNPTQCE 331
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 36.0 bits (84), Expect = 0.042
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNP 129
V V+G L L + K+A DLRLL A + EI P + Q GSS M K NP
Sbjct: 270 VEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP--AVQPGSSIMPGKVNP 322
Score = 36.0 bits (84), Expect = 0.042
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNP 308
V V+G L L + K+A DLRLL A + EI P + Q GSS M K NP
Sbjct: 270 VEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP--AVQPGSSIMPGKVNP 322
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 35.5 bits (83), Expect = 0.055
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNP 129
V V+G L L + K+ DLRLL A + EI P + Q GSS M K NP
Sbjct: 277 VEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNP 329
Score = 35.5 bits (83), Expect = 0.055
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNP 308
V V+G L L + K+ DLRLL A + EI P + Q GSS M K NP
Sbjct: 277 VEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNP 329
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 34.8 bits (81), Expect = 0.090
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L +L S+ K+A D+R L + E+ P + GSS M K NP + E
Sbjct: 271 VEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 328
Query: 135 LCSLA 139
L +A
Sbjct: 329 LTMVA 333
Score = 34.8 bits (81), Expect = 0.090
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L +L S+ K+A D+R L + E+ P + GSS M K NP + E
Sbjct: 271 VEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEA 328
Query: 314 LCSLA 318
L +A
Sbjct: 329 LTMVA 333
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 34.3 bits (80), Expect = 0.14
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNP 129
V V+G L +L S+ K+A DLRLL+ + EI P + Q GSS M K NP
Sbjct: 270 VEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLP--ANQPGSSIMPGKVNP 322
Score = 34.3 bits (80), Expect = 0.14
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNP 308
V V+G L +L S+ K+A DLRLL+ + EI P + Q GSS M K NP
Sbjct: 270 VEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLP--ANQPGSSIMPGKVNP 322
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 33.8 bits (78), Expect = 0.17
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 82 VTGVLSSLGASIHKLATDLRLLAHMK-EIEEPFEST---QIGSSAMAYKRNP 129
L L ++ K+A D+ LL M+ E+ E FE + GSS M +KRNP
Sbjct: 238 FASALGLLAGTLGKIARDVSLL--MQTEVGEVFEPAAAGKGGSSTMPHKRNP 287
Score = 33.8 bits (78), Expect = 0.17
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 261 VTGVLSSLGASIHKLATDLRLLAHMK-EIEEPFEST---QIGSSAMAYKRNP 308
L L ++ K+A D+ LL M+ E+ E FE + GSS M +KRNP
Sbjct: 238 FASALGLLAGTLGKIARDVSLL--MQTEVGEVFEPAAAGKGGSSTMPHKRNP 287
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 32.4 bits (74), Expect = 0.62
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V ++G L+++ S+ K+A D+RLL + E+ P + GSS M K NP + E
Sbjct: 267 VELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLP--ENEPGSSIMPGKVNPTQCEA 324
Query: 135 L 135
L
Sbjct: 325 L 325
Score = 32.4 bits (74), Expect = 0.62
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V ++G L+++ S+ K+A D+RLL + E+ P + GSS M K NP + E
Sbjct: 267 VELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLP--ENEPGSSIMPGKVNPTQCEA 324
Query: 314 L 314
L
Sbjct: 325 L 325
>gnl|CDD|153084 cd01675, RNR_III, Class III ribonucleotide reductase.
Ribonucleotide reductase (RNR) catalyzes the reductive
synthesis of deoxyribonucleotides from their
corresponding ribonucleotides. It provides the
precursors necessary for DNA synthesis. RNRs are
separated into three classes based on their
metallocofactor usage. Class I RNRs, found in
eukaryotes, bacteria, and bacteriophage, use a
diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use coenzyme
B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found
in strict or facultative anaerobic bacteria,
bacteriophage, and archaea, use an FeS cluster and
S-adenosylmethionine to generate a glycyl radical. Many
organisms have more than one class of RNR present in
their genomes. All three RNRs have a ten-stranded
alpha-beta barrel domain that is structurally similar to
the domain of PFL (pyruvate formate lyase). The class
III enzyme from phage T4 consists of two subunits, this
model covers the larger subunit which contains the
active and allosteric sites.
Length = 555
Score = 31.1 bits (71), Expect = 1.5
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 21/80 (26%)
Query: 410 IHTLSESFLTTDCLLITLQNVLE-GLVVYPKVIQ--RHIDQELPFMATENIIMAMVKAGG 466
IH L LT C L+ +LE G +I+ +H+ L + N +
Sbjct: 45 IHDLDYLPLTPYCCGWDLRPLLEKGFTTGNGIIEPPKHLSSALGHIV--NFLGT------ 96
Query: 467 DRQVCHEKIRVLSHQAGAQS 486
V + QAG Q+
Sbjct: 97 ----------VQNEQAGGQA 106
>gnl|CDD|198450 cd10482, EphR_LBD_A4, Ligand Binding Domain of Ephrin type-A
Receptor 4. Ephrin receptors (EphRs) comprise the
largest subfamily of receptor tyrosine kinases (RTKs).
Class EphA receptors bind GPI-anchored ephrin-A ligands.
There are ten vertebrate EphA receptors (EphA1-10),
which display promiscuous interactions with six ephrin-A
ligands. A loss of EphA4, as well as EphB2, precedes
memory decline in a murine model of Alzheimers disease.
EphA4 has been shown to have a negative effect on axon
regeneration and functional restoration in corticospinal
lesions and is downregulated in some cervical cancers.
EphRs contain a ligand binding domain and two
fibronectin repeats extracellularly, a transmembrane
segment, and a cytoplasmic tyrosine kinase domain.
Binding of the ephrin ligand to EphR requires cell-cell
contact since both are anchored to the plasma membrane.
The resulting downstream signals occur bidirectionally
in both EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling).
Length = 174
Score = 28.5 bits (63), Expect = 5.0
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 106 MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDS 165
+ I P E S M K P+R+ ++C+ +M QN+ T W+ R
Sbjct: 14 LGWIASPLEGGWEEVSIMDEKNTPIRTYQVCN----VMEPSQNNW--LRTDWIPR----E 63
Query: 166 ANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI 203
+R+ + F DC N L G++ KET+++
Sbjct: 64 GAQRVYIEIKFTLRDC------NSLPGVMGTCKETFNL 95
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 28.9 bits (65), Expect = 5.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 220 SGRPGDGDKVKALDRLVTKKAGFTSSHIIT 249
S GD+ KALD ++TK GF + H I
Sbjct: 154 SDERASGDERKALDEIMTKLRGFATEHGIH 183
>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
Length = 266
Score = 29.1 bits (66), Expect = 5.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 98 TDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLH 146
R L + K I ++GSS ++Y+ + ER+ L + L
Sbjct: 1 MMRRQLENAKRI-----VIKVGSSTLSYENGKINLERIEQLVFVISDLM 44
Score = 29.1 bits (66), Expect = 5.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 277 TDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLH 325
R L + K I ++GSS ++Y+ + ER+ L + L
Sbjct: 1 MMRRQLENAKRI-----VIKVGSSTLSYENGKINLERIEQLVFVISDLM 44
>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional.
Length = 252
Score = 28.4 bits (64), Expect = 6.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 361 KQHGKENDLVDRIRADPYFAPILN 384
++HG+ + LV+ A+PYF IL+
Sbjct: 81 ERHGRLDILVNNAAANPYFGHILD 104
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 28.8 bits (64), Expect = 7.5
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 82 VTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLC 136
V+ L ++ K+A DLRL+A + EI P + Q GSS M K NP+ E +
Sbjct: 283 VSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLP--ARQPGSSIMPGKVNPVMPEVIN 340
Query: 137 SLA 139
+A
Sbjct: 341 QIA 343
Score = 28.8 bits (64), Expect = 7.5
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 261 VTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLC 315
V+ L ++ K+A DLRL+A + EI P + Q GSS M K NP+ E +
Sbjct: 283 VSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLP--ARQPGSSIMPGKVNPVMPEVIN 340
Query: 316 SLA 318
+A
Sbjct: 341 QIA 343
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 28.9 bits (65), Expect = 8.1
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIR 204
+ L +S LTL E + D + TLQ + + YP++ +
Sbjct: 656 LQDGQLSESG---LTLKELEIIADSFVQTLQGIYHSRIEYPEDKKKKQ 700
>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase.
Length = 436
Score = 28.4 bits (63), Expect = 9.3
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 200 TYSIRIIPDNRLSSHHTTKRSGRPGDGDKV------KALDRLVTKKAGFTSSHIITGQTY 253
T S+ I + S T SG G +V K L +VT AGF SH++ +
Sbjct: 83 TRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVD-KLI 141
Query: 254 SRKVDVIV-----TGVLSSLGASIHKLATD-LRLLAHMKEIEEP--FESTQI-----GSS 300
R +VIV TG +L +H L+ H ++ EP E QI +S
Sbjct: 142 GRGDEVIVIDNFFTGRKENL---VHLFGNPRFELIRH--DVVEPILLEVDQIYHLACPAS 196
Query: 301 AMAYKRNPMRS 311
+ YK NP+++
Sbjct: 197 PVHYKYNPVKT 207
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase.
Length = 400
Score = 28.2 bits (64), Expect = 9.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 453 ATENIIMAMVKAGG 466
ATENI+MA V A G
Sbjct: 156 ATENIMMAAVLAEG 169
>gnl|CDD|220058 pfam08885, GSCFA, GSCFA family. This family of proteins are
functionally uncharacterized. They have been named GSCFA
after a highly conserved N-terminal motif in the
alignment. Distant similarity to the pfam00657 lipases
suggests these proteins are likely to be enzymes.
Length = 251
Score = 27.9 bits (63), Expect = 9.8
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 410 IHTLSESFLTTDCLLITL------QNVLEGLVVY--PKVIQRHIDQEL 449
+ + D + TL ++ G VV PKV Q D+EL
Sbjct: 92 LAEVRAQLKEADVFVFTLGLAEAWRDRETGEVVANCPKVPQGRFDKEL 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.369
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,953,662
Number of extensions: 2294754
Number of successful extensions: 1984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1917
Number of HSP's successfully gapped: 103
Length of query: 486
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 385
Effective length of database: 6,457,848
Effective search space: 2486271480
Effective search space used: 2486271480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)