RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14319
(486 letters)
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 231 bits (591), Expect = 1e-70
Identities = 72/140 (51%), Positives = 96/140 (68%)
Query: 59 KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQI 118
KKA F++ +ITGQTYSR+ D + LS LGA+ K+ TD+R+L E+ EPFE QI
Sbjct: 224 KKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQI 283
Query: 119 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
GSSAM YK+NPM+SER C+L+R L++ Q +L + Q +ERTLDDSA RR+ + + LT
Sbjct: 284 GSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLT 343
Query: 179 TDCLLITLQNVLEGLVVYPK 198
+ LL TLQN+ EGL V
Sbjct: 344 AEALLTTLQNIFEGLSVQTD 363
Score = 204 bits (522), Expect = 2e-60
Identities = 69/125 (55%), Positives = 89/125 (71%)
Query: 223 PGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 282
GD KV+ALD LVTKKA F++ +ITGQTYSR+ D + LS LGA+ K+ TD+R+L
Sbjct: 209 AGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVL 268
Query: 283 AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLD 342
E+ EPFE QIGSSAM YK+NPM+SER C+L+R L++ Q +L + Q +ERTLD
Sbjct: 269 QAFGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLD 328
Query: 343 DSANR 347
DSA R
Sbjct: 329 DSAGR 333
Score = 118 bits (299), Expect = 3e-29
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
+ + LT + LL TLQN+ EGL V +++ ++ E+ F+ E +M + + G DRQ
Sbjct: 336 LIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQA 395
Query: 472 HEKIRVLSHQAGAQ 485
H IR + +A
Sbjct: 396 HAVIRKTALEAKQL 409
Score = 48.8 bits (117), Expect = 3e-06
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 361 KQHGKENDLVDRIRADPYFAPILNQMPTLL-DPKSFYGRAPEQ 402
+ + + + ADP+F + +++ L+ +P +F GR Q
Sbjct: 408 QLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQ 450
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 231 bits (591), Expect = 2e-70
Identities = 99/140 (70%), Positives = 117/140 (83%)
Query: 59 KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQI 118
+KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA++KE+EEPFE QI
Sbjct: 250 EKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQI 309
Query: 119 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
GSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDDSANRR+ L+E+FLT
Sbjct: 310 GSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLT 369
Query: 179 TDCLLITLQNVLEGLVVYPK 198
D +L TLQN+ EGLVVYPK
Sbjct: 370 ADTILNTLQNISEGLVVYPK 389
Score = 203 bits (519), Expect = 8e-60
Identities = 87/124 (70%), Positives = 103/124 (83%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
GD KV+ LD++VT+KAGF + IITGQTY+RKVD+ V VL+SLGAS+HK+ TD+RLLA
Sbjct: 236 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 295
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
++KE+EEPFE QIGSSAM YKRNPMRSER CSLAR LM+L + L TAS QW ERTLDD
Sbjct: 296 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355
Query: 344 SANR 347
SANR
Sbjct: 356 SANR 359
Score = 118 bits (298), Expect = 5e-29
Identities = 56/74 (75%), Positives = 62/74 (83%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ C
Sbjct: 362 CLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDC 421
Query: 472 HEKIRVLSHQAGAQ 485
HEKIRVLS QA +
Sbjct: 422 HEKIRVLSQQAASV 435
Score = 56.5 bits (137), Expect = 1e-08
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 359 QVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQ 402
VKQ G +NDL++RI+ D YF+PI +Q+ LLDP SF GRA +Q
Sbjct: 435 VVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQ 478
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 156 bits (396), Expect = 4e-43
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 59 KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQI 118
++ G H+IT Q R+ ++ L+ + A +LA ++R L+ EI E E
Sbjct: 204 ERLGLPH-HVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR-PEIGEVVEG-GG 260
Query: 119 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
GSSAM +K NP SER+ SLAR++ +L + W ER L +SAN R+ + E+ L
Sbjct: 261 GSSAMPHKANPTASERIVSLARYVRALTHVAF-ENVALWHERDLTNSANERVWIPEALLA 319
Query: 179 TDCLLITLQNVLEGLVVYPK 198
D +L + VL+ + + +
Sbjct: 320 LDEILTSALRVLKNVYIDEE 339
Score = 125 bits (316), Expect = 6e-32
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM 285
G+ + R V ++ G H+IT Q R+ ++ L+ + A +LA ++R L+
Sbjct: 192 GELGLEVRRRVAERLGLPH-HVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR- 249
Query: 286 KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
EI E E GSSAM +K NP SER+ SLAR++ +L + W ER L +SA
Sbjct: 250 PEIGEVVEG-GGGSSAMPHKANPTASERIVSLARYVRALTHVAF-ENVALWHERDLTNSA 307
Query: 346 N 346
N
Sbjct: 308 N 308
Score = 78.1 bits (193), Expect = 9e-16
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
+ E+ L D +L + VL+ + + + I ++ + LP++ TE + M+K G R
Sbjct: 312 WIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEA 371
Query: 472 HEKIRVLSHQA 482
++K + +
Sbjct: 372 YKKAKEVKALT 382
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 123 bits (310), Expect = 6e-31
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 48 GVLSSLGASIHKKA----GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 103
G +++ + K G ++ I T QT R L+ + SI K+A ++R L
Sbjct: 196 GTYANIDPFVEKYVCENLGLEAAPIST-QTLQRDRHAHYMSTLALIATSIEKMAVEIRGL 254
Query: 104 AH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT 161
+E+EE F Q GSSAM +KRNP+ SE + LAR + + W ER
Sbjct: 255 QKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYE-NVPLWHERD 313
Query: 162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ S+ R+ L ++ + + +L N+++ L VYP+
Sbjct: 314 ISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPE 350
Score = 92.8 bits (231), Expect = 2e-20
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP 291
+ V + G ++ I T QT R L+ + SI K+A ++R L +E+EE
Sbjct: 207 KYVCENLGLEAAPIST-QTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEA 265
Query: 292 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSAN 346
F Q GSSAM +KRNP+ SE + LAR + + W ER + S+
Sbjct: 266 FAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYE-NVPLWHERDISHSSA 319
Score = 56.2 bits (136), Expect = 1e-08
Identities = 11/71 (15%), Positives = 40/71 (56%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L ++ + + +L N+++ L VYP+ ++R++ + + ++ +++ ++ G R+
Sbjct: 323 ILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEA 382
Query: 472 HEKIRVLSHQA 482
++ ++ + +A
Sbjct: 383 YDIVQPKAMEA 393
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 113 bits (286), Expect = 9e-28
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 48 GVLSSLGASIHKKA----GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 103
G +++ + +KA G + T Q R L+ + A I ++A ++R L
Sbjct: 184 GNYANVPPEVEEKALSYLGLKPEPVST-QVVPRDRHAFYLSTLAIVAAGIERIAVEIRHL 242
Query: 104 AH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT 161
+ E+EEPF Q GSSAM +K+NP+ ERL L+R + + SL W ER
Sbjct: 243 QRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE-NIALWHERD 301
Query: 162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ S+ R ++ T +++T NV+ + V +
Sbjct: 302 ISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEE 338
Score = 84.6 bits (210), Expect = 8e-18
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP 291
G + T Q R L+ + A I ++A ++R L + E+EEP
Sbjct: 195 EKALSYLGLKPEPVST-QVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEP 253
Query: 292 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMER 339
F Q GSSAM +K+NP+ ERL L+R + + SL W ER
Sbjct: 254 FRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE-NIALWHER 300
Score = 55.0 bits (133), Expect = 3e-08
Identities = 9/70 (12%), Positives = 37/70 (52%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
++ T +++T NV+ + V + ++++ID + ++ +++ +++ G R+ +
Sbjct: 312 FPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAY 371
Query: 473 EKIRVLSHQA 482
+ ++ + +
Sbjct: 372 DIVQRNALKT 381
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 112 bits (283), Expect = 3e-27
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 48 GVLSSLGASIHKKA----GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 103
G L KKA G + T Q R + + + ++I +LA ++R L
Sbjct: 185 GNYCILTTEDEKKAADILGLPVEEVST-QVIPRDRIAKLISIHGLIASAIERLAVEIRHL 243
Query: 104 AH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT 161
+ E+ E F Q GSS M +K+NP+ +E L +AR L S +L W ER
Sbjct: 244 HRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIALE-NCVLWHERD 302
Query: 162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ S+ R L ++F L ++N ++ LVV
Sbjct: 303 ISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRD 339
Score = 84.3 bits (209), Expect = 1e-17
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP 291
+ G + T Q R + + + ++I +LA ++R L + E+ E
Sbjct: 196 KKAADILGLPVEEVST-QVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEG 254
Query: 292 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSAN 346
F Q GSS M +K+NP+ +E L +AR L S +L W ER + S+
Sbjct: 255 FSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIALE-NCVLWHERDISHSSA 308
Score = 55.4 bits (134), Expect = 2e-08
Identities = 10/71 (14%), Positives = 32/71 (45%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
L ++F L ++N ++ LVV +I+ + ++++ + + R+ C
Sbjct: 312 YLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDC 371
Query: 472 HEKIRVLSHQA 482
++ ++ ++
Sbjct: 372 YKIVQQVAFDL 382
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 107 bits (269), Expect = 2e-25
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 84 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 141
VL + S+ K D+ LL E+ EP + GSS M +KRNP+ + L A
Sbjct: 238 SVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATR 297
Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ L A A Q ER+L TL + L Q + EG+ V
Sbjct: 298 VPGLLSTLFA-AMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAA 353
Score = 81.2 bits (201), Expect = 1e-16
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 263 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 320
VL + S+ K D+ LL E+ EP + GSS M +KRNP+ + L A
Sbjct: 238 SVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATR 297
Query: 321 LMSLHQNSLATASTQWMER 339
+ L A A Q ER
Sbjct: 298 VPGLLSTLFA-AMPQEHER 315
Score = 45.7 bits (109), Expect = 2e-05
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
TL + L Q + EG+ V ++R++D + E + + + + G R
Sbjct: 326 TLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLG-RDRA 384
Query: 472 HEKIRVLSHQAGAQ 485
H + +A A+
Sbjct: 385 HHLLEQCCQRAVAE 398
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 107 bits (269), Expect = 2e-25
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 84 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 141
VL + ++ K+A D L+ + E+ EP + GSS M +KRNP+ + + + A
Sbjct: 242 SVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANR 301
Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ +L + + Q ER+L L+L E F T L +VL+G+ V +
Sbjct: 302 VPALMSSIYQ-SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAE 357
Score = 80.8 bits (200), Expect = 2e-16
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 263 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 320
VL + ++ K+A D L+ + E+ EP + GSS M +KRNP+ + + + A
Sbjct: 242 SVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANR 301
Query: 321 LMSLHQNSLATASTQWMER 339
+ +L + + Q ER
Sbjct: 302 VPALMSSIYQ-SMVQEHER 319
Score = 44.2 bits (105), Expect = 6e-05
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
+L E F T L +VL+G+ V + + ++I+ + E ++MA+ G R
Sbjct: 330 SLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMG-RLNA 388
Query: 472 HEKIRVLSHQAGAQ 485
H + A A+
Sbjct: 389 HHVVEAACKTAVAE 402
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 107 bits (269), Expect = 2e-25
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 84 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 141
L+ + S+ KLA D+ ++ + E+ EPF + SS M K+NP+ E + + AR
Sbjct: 236 QFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARI 295
Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ + + L A ER + E F +L + +L GL V+P
Sbjct: 296 VRNHATSMLD-AMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPD 351
Score = 80.4 bits (199), Expect = 2e-16
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 263 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 320
L+ + S+ KLA D+ ++ + E+ EPF + SS M K+NP+ E + + AR
Sbjct: 236 QFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARI 295
Query: 321 LMSLHQNSLATASTQWMER 339
+ + + L A ER
Sbjct: 296 VRNHATSMLD-AMIHDFER 313
Score = 46.1 bits (110), Expect = 1e-05
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
+ E F +L + +L GL V+P ++ ++D + E ++MA+ G R+
Sbjct: 324 AVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTG-RKEA 382
Query: 472 HEKIRVLSHQAGAQ 485
H+ + + +A
Sbjct: 383 HDIVYLGCRRAVED 396
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 100 bits (251), Expect = 2e-23
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 84 GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 143
+LS + ++ K D+ L+ + E S GSSAM +K+NP+ +E L +LARF
Sbjct: 239 NLLSLVTGTLGKFGQDIALM--AEIGSEIRLSGGGGSSAMPHKQNPVNAETLVTLARFNA 296
Query: 144 SLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLIT---LQNVLEGLVVYPK 198
+ Q ER+ LTL + T L+ L ++ L
Sbjct: 297 VQISALHQ-SLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADES 353
Score = 82.3 bits (204), Expect = 3e-17
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 263 GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 322
+LS + ++ K D+ L+ + E S GSSAM +K+NP+ +E L +LARF
Sbjct: 239 NLLSLVTGTLGKFGQDIALM--AEIGSEIRLSGGGGSSAMPHKQNPVNAETLVTLARFNA 296
Query: 323 SLHQNSLATASTQWMER 339
+ Q ER
Sbjct: 297 VQISALHQ-SLVQEQER 312
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 61.5 bits (149), Expect = 2e-10
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 1/127 (0%)
Query: 72 QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 131
Q V+ ++ + + D+ + ++ + ++GSS M +K NP+
Sbjct: 250 QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPID 309
Query: 132 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLE 191
E +L + + M+R L DS R L +F + ++ +
Sbjct: 310 FENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLR-NLGVAFSYSLIAYHSVAKGND 368
Query: 192 GLVVYPK 198
L +
Sbjct: 369 KLQINKS 375
Score = 54.6 bits (131), Expect = 3e-08
Identities = 17/95 (17%), Positives = 35/95 (36%)
Query: 251 QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 310
Q V+ ++ + + D+ + ++ + ++GSS M +K NP+
Sbjct: 250 QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPID 309
Query: 311 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
E +L + + M+R L DS
Sbjct: 310 FENAEGNLGLSNALFIHFANKLTQSRMQRDLSDST 344
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 61.1 bits (148), Expect = 4e-10
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 4/143 (2%)
Query: 57 IHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFEST 116
+ K S T Q + L+ ++ L D+ L ++ +
Sbjct: 233 LKKHFNLTYSIYCT-QIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEK 291
Query: 117 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQW-MERTLDDSANRRLTLSES 175
++GSS M +K NP+ E + ++ ++R L DS R + S
Sbjct: 292 EVGSSTMPHKVNPIDFENAEGNLHIANAF-FKLFSSKLPTSRLQRDLSDSTVLR-NIGSS 349
Query: 176 FLTTDCLLITLQNVLEGLVVYPK 198
++ L + + +
Sbjct: 350 LAYCLIAYKSVLKGLNKIDIDRR 372
Score = 54.1 bits (130), Expect = 5e-08
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 233 DRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPF 292
+ K T S T Q + L+ ++ L D+ L ++
Sbjct: 230 GLFLKKHFNLTYSIYCT-QIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKV 288
Query: 293 ESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQW-MERTLDDSA 345
+ ++GSS M +K NP+ E + ++ ++R L DS
Sbjct: 289 KEKEVGSSTMPHKVNPIDFENAEGNLHIANAF-FKLFSSKLPTSRLQRDLSDST 341
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 60.0 bits (145), Expect = 8e-10
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 1/127 (0%)
Query: 72 QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 131
Q + ++ + D+ + ++ + +IGSS M +K NP+
Sbjct: 247 QIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPID 306
Query: 132 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLE 191
E ++ Q+ + +R L DS R L + +
Sbjct: 307 FENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLR-NLGVGIGYALIAYQSTLKGVS 365
Query: 192 GLVVYPK 198
L V
Sbjct: 366 KLEVNRD 372
Score = 53.4 bits (128), Expect = 9e-08
Identities = 16/95 (16%), Positives = 33/95 (34%)
Query: 251 QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 310
Q + ++ + D+ + ++ + +IGSS M +K NP+
Sbjct: 247 QIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPID 306
Query: 311 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
E ++ Q+ + +R L DS
Sbjct: 307 FENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDST 341
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 9e-08
Identities = 86/570 (15%), Positives = 159/570 (27%), Gaps = 147/570 (25%)
Query: 4 YKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSS----LGASIHK 59
+++ D V RL +++ Q V V VL L + I
Sbjct: 51 IDHIIMSKDAVSGTLRLFWT--------LLSKQ--EEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 60 KAGFNSSHIITGQTYSRKVDVIVTG--VLSSLGASIHKLATDLRLLAHMKEIE-EPFEST 116
+ ++T + Y + D + V + S + LR + E+
Sbjct: 101 EQ--RQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPAKNVLI 155
Query: 117 Q----IGSSAMAYKRNPMRSERL---------------CSLARFLMSLHQNSLATASTQW 157
G + +A + S ++ C+ ++ + Q L W
Sbjct: 156 DGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 158 MERTLDDSAN------------RRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI-- 203
R D S+N RRL S+ + +CLL+ L NV +++
Sbjct: 214 TSR-SDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLV-LLNVQNAKAW---NAFNLSC 266
Query: 204 RIIPDNRLSSHHTTKRSG--RPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIV 261
+I+ TT+ + L T + +D
Sbjct: 267 KILL--------TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDE--VKSLLLKYLDCRP 315
Query: 262 TGVLSSLGASIHKLATDL--RLLAHMKEIEEPFE-------STQIGSSAMAYKRNPMRSE 312
L + + + + + ++ +T I SS + R +
Sbjct: 316 QD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-K 373
Query: 313 RLCSLARFLMSLHQNSLATASTQWMERTLDDS---ANRFPTKSVFSCVTQVKQHGKEN-- 367
L+ F S H S W + D N+ S+ V++ KE+
Sbjct: 374 MFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSL------VEKQPKESTI 426
Query: 368 ---DLVDRIRA-------------DPYFAPILNQMPTLLDPK------SFYG---RAPEQ 402
+ ++ D Y P L+ P S G + E
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 403 QR--------------LSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQE 448
L K H T ++ N L+ L Y I D +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDS-----TAWNASGSILNTLQQLKFYKPYIC---DND 538
Query: 449 LPFMATENIIMAMVKAGGDRQVCHEKIRVL 478
+ N I+ + + +C + +L
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 77/462 (16%), Positives = 133/462 (28%), Gaps = 139/462 (30%)
Query: 16 ALDRLVTKKAGFNSSHIIT---GQ---------------TYSRKV-DVI--VTGVLSSLG 54
AL R V + ++ ++ GQ TY V D+I LS L
Sbjct: 144 ALFRAVGE----GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 55 ASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFE 114
+ +++ ++++ L + D L + P
Sbjct: 200 RTTLDAEKV----------FTQGLNIL--EWLENPSN-----TPDKDYLLSI-----PIS 237
Query: 115 STQIGSSAMA-YKR-------NP--MRSERLCSLARFLMSLHQNSLATA-----STQWME 159
IG +A Y P +RS L + H L TA + W
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGA-----TGHSQGLVTAVAIAETDSW-- 289
Query: 160 RTLDDSANRRLTLSESFLTTDCLLITL--QNVLEGLVVYPKETYSIRIIPDNRLSSHHTT 217
ESF + IT+ + YP + I+ D+ ++
Sbjct: 290 --------------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--- 332
Query: 218 KRSGRPG-----DGDKVKALDRLVTK--KAGFTSSHIITGQTYSRKVDVIVTGVLSSLGA 270
G P + + V K + K +++V+G SL
Sbjct: 333 ---GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-NLVVSGPPQSL-- 386
Query: 271 SIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL-MSL--HQN 327
+ L LR + + P Q R P +L RFL ++ H +
Sbjct: 387 --YGLNLTLR------KAKAPSGLDQ--------SRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 328 SLATASTQWMERTLDDSAN------RFPTKSVFSCVT-QVKQHGKEN---DLVDRIRADP 377
L AS + + ++ + + P V+ + + +VD I P
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIP---VYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 378 -YFAPILNQMPT-LLD--PKSFYGRAPEQQR-LSAKGIHTLS 414
+ T +LD P G R G+ +
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 33.1 bits (75), Expect = 0.23
Identities = 33/207 (15%), Positives = 60/207 (28%), Gaps = 59/207 (28%)
Query: 276 ATDLR--LLAHMKEIEEPFE-STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA 332
A R L+H +E T A +L +F L + + A
Sbjct: 3 AYSTRPLTLSH-GSLEHVLLVPTASFFIA----------SQL--QEQFNKILPEPTEGFA 49
Query: 333 STQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPY--FAPILNQMPTLL 390
+ DD + V + + + + F +LN L
Sbjct: 50 A--------DD-----EPTTPAELVGKFLGY-----VSSLVEPSKVGQFDQVLN---LCL 88
Query: 391 DPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLIT-----LQNVLEGLVVYPKVIQRHI 445
F E L IH L+ L + + ++N + ++ + +
Sbjct: 89 T--EF-----ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 446 DQELPFMATEN---IIMAMVKAGGDRQ 469
+ L F A ++A+ GG Q
Sbjct: 142 NSAL-FRAVGEGNAQLVAIF--GG--Q 163
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 35.9 bits (84), Expect = 0.028
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V+V G L L + K+ DLRLL+ + EI P Q GSS M K NP+ E
Sbjct: 278 VMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP--ELQAGSSIMPAKVNPVVPE 334
Score = 35.9 bits (84), Expect = 0.028
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V+V G L L + K+ DLRLL+ + EI P Q GSS M K NP+ E
Sbjct: 278 VMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP--ELQAGSSIMPAKVNPVVPE 334
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 35.5 bits (83), Expect = 0.032
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V+ L ++ K+A DLRL+A + EI P + Q GSS M K NP+ E
Sbjct: 275 TEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLP--ARQPGSSIMPGKVNPVMPE 331
Score = 35.5 bits (83), Expect = 0.032
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V+ L ++ K+A DLRL+A + EI P + Q GSS M K NP+ E
Sbjct: 275 TEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLP--ARQPGSSIMPGKVNPVMPE 331
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 35.2 bits (82), Expect = 0.044
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V V G + +L ++ K+ D+R LA + EI P + + GSS M K NP + E
Sbjct: 275 VNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIP--ANEPGSSIMPGKVNPTQVE 331
Score = 35.2 bits (82), Expect = 0.044
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V V G + +L ++ K+ D+R LA + EI P + + GSS M K NP + E
Sbjct: 275 VNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIP--ANEPGSSIMPGKVNPTQVE 331
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 35.2 bits (82), Expect = 0.045
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V +G+L + + K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 295 VTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AVQPGSSIMPGKVNPVIPE 351
Score = 35.2 bits (82), Expect = 0.045
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V +G+L + + K+A DLRLL+ + EI P + Q GSS M K NP+ E
Sbjct: 295 VTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AVQPGSSIMPGKVNPVIPE 351
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 35.3 bits (82), Expect = 0.049
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V ++G +++ S+ K+A D+R L + E+ P + GSS M K NP + E
Sbjct: 302 VELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP--ENEPGSSIMPGKVNPTQCEA 359
Query: 135 L 135
+
Sbjct: 360 M 360
Score = 35.3 bits (82), Expect = 0.049
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V ++G +++ S+ K+A D+R L + E+ P + GSS M K NP + E
Sbjct: 302 VELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP--ENEPGSSIMPGKVNPTQCEA 359
Query: 314 L 314
+
Sbjct: 360 M 360
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 34.8 bits (81), Expect = 0.052
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V G L L AS+ K+A D+R LA + EI P + GSS M K NP + E
Sbjct: 275 VQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCE 331
Score = 34.8 bits (81), Expect = 0.052
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V G L L AS+ K+A D+R LA + EI P + GSS M K NP + E
Sbjct: 275 VQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIP--ENEPGSSIMPGKVNPTQCE 331
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 34.9 bits (81), Expect = 0.054
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
V +G L++L S+ K+A D+R L E+ P + GSS M K NP ++E
Sbjct: 300 VECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLP--ENEPGSSIMPGKVNPTQNEA 357
Query: 135 L 135
L
Sbjct: 358 L 358
Score = 34.9 bits (81), Expect = 0.054
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
V +G L++L S+ K+A D+R L E+ P + GSS M K NP ++E
Sbjct: 300 VECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLP--ENEPGSSIMPGKVNPTQNEA 357
Query: 314 L 314
L
Sbjct: 358 L 358
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 34.9 bits (81), Expect = 0.057
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V +G L ++ S+ K+A D+R + + EI+ P Q GSS M K NP+ E
Sbjct: 297 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPE 353
Score = 34.9 bits (81), Expect = 0.057
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V +G L ++ S+ K+A D+R + + EI+ P Q GSS M K NP+ E
Sbjct: 297 VEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQPGSSIMPGKVNPVLPE 353
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 34.9 bits (81), Expect = 0.062
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 133
V +G L+++ S+ K+A D+RLL + E+ P + GSS M K NP + E
Sbjct: 296 VEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLP--ENEPGSSIMPGKVNPTQVE 352
Score = 34.9 bits (81), Expect = 0.062
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSE 312
V +G L+++ S+ K+A D+RLL + E+ P + GSS M K NP + E
Sbjct: 296 VEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLP--ENEPGSSIMPGKVNPTQVE 352
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.15
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 92 SIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYK 126
++ KL L+L A +S + A+A K
Sbjct: 21 ALKKLQASLKLYA-------D-DS----APALAIK 43
Score = 32.2 bits (72), Expect = 0.15
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 271 SIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYK 305
++ KL L+L A +S + A+A K
Sbjct: 21 ALKKLQASLKLYA-------D-DS----APALAIK 43
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 29.5 bits (66), Expect = 2.6
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTY--SRKVDVIVTGVLSSLGASIHKLATDLRL 281
D K +D T +G I T + K D ++ V + I D+RL
Sbjct: 243 QYDDICK-ID-FGTHISGR---IIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRL 297
Query: 282 LAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 322
+ I+E ES ++ Y+ P+R+ S+ ++ +
Sbjct: 298 CDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 338
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 28.2 bits (63), Expect = 6.0
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 26/131 (19%)
Query: 266 SSLGASIHKLATD-----LRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 320
+ L ++ + A D LRLLA + E + G + +Y P + +F
Sbjct: 64 AKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAP--------VCKF 115
Query: 321 LMSLH-QNSLATASTQWMERTLDDSANRFPT-----KSVFSCVTQVKQHGKENDLVDRIR 374
L S+A + ++ L +S F+ K +G +
Sbjct: 116 LTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFN-----KAYGM--SAFEYHG 168
Query: 375 ADPYFAPILNQ 385
DP F + N+
Sbjct: 169 TDPRFNRVFNE 179
Score = 27.9 bits (62), Expect = 9.0
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 87 SSLGASIHKLATD-----LRLLAHMKEIEEPFESTQIGSSAMAYKRNPM-----RSERLC 136
+ L ++ + A D LRLLA + E + G + +Y P+ +E
Sbjct: 64 AKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGV 123
Query: 137 SLARFLMSLHQNSLATA 153
S+A + L +
Sbjct: 124 SMAALALMNQDKVLMES 140
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 27.9 bits (63), Expect = 8.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 453 ATENIIMAMVKAGG 466
AT+NI+MA A G
Sbjct: 190 ATQNIMMAATLAEG 203
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 27.9 bits (62), Expect = 8.3
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 20/130 (15%)
Query: 262 TGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLC------ 315
+ ++L LRLLA + + + G + Y + + + L
Sbjct: 72 LPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMV-GKYLVPDESRG 130
Query: 316 SLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRA 375
LA F L +L + E +D+ + F HG + +
Sbjct: 131 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNV-----------HGV--TKYEFMGK 177
Query: 376 DPYFAPILNQ 385
D I N+
Sbjct: 178 DKKMNQIFNK 187
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain,
NSP3, ADRP, hydrolase, ribosomal frameshifting,
RNA-binding; 1.78A {Human coronavirus 229E} PDB:
3ewr_A* 3ewq_A*
Length = 193
Score = 27.3 bits (61), Expect = 8.9
Identities = 5/37 (13%), Positives = 8/37 (21%), Gaps = 8/37 (21%)
Query: 33 ITGQTYSRKVDVIVTGVLSSL-------GASIHKKAG 62
+ D IV +L A +
Sbjct: 47 VDTVVNGVDFDFIVNAANENLAHGGGLAKA-LDVYTK 82
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 27.9 bits (63), Expect = 9.1
Identities = 2/14 (14%), Positives = 5/14 (35%)
Query: 453 ATENIIMAMVKAGG 466
A + ++ G
Sbjct: 195 AVKTALLMGAVTHG 208
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 27.8 bits (63), Expect = 9.2
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 453 ATENIIMAMVKAGG 466
TEN ++ +
Sbjct: 173 GTENALLYLASVPE 186
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 27.8 bits (63), Expect = 9.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 453 ATENIIMAMVKAGG 466
AT I+ A A G
Sbjct: 165 ATVTIMSAATLAEG 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.369
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,058,120
Number of extensions: 416432
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 75
Length of query: 486
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 389
Effective length of database: 3,993,456
Effective search space: 1553454384
Effective search space used: 1553454384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)