RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14319
(486 letters)
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 85.2 bits (210), Expect = 2e-18
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 3/139 (2%)
Query: 63 FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKE---IEEPFESTQIG 119
F ++ + V +G L++L S+ K+A D+R L E + G
Sbjct: 257 FQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPG 316
Query: 120 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTT 179
SS M K NP ++E L + +M + S E + L+ L T
Sbjct: 317 SSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLIT 376
Query: 180 DCLLITLQNVLEGLVVYPK 198
D + +EG+
Sbjct: 377 DAAYSFRVHCVEGIKANEP 395
Score = 67.8 bits (165), Expect = 7e-13
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 5/158 (3%)
Query: 223 PGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 282
PG K+ T T+ + + V +G L++L S+ K+A D+R L
Sbjct: 239 PGFDVKIAEQISKETGLKFQTAPNRFE-ALAAHDAIVECSGALNTLACSLFKIAQDIRYL 297
Query: 283 AHMKE---IEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMER 339
E + GSS M K NP ++E L + +M + S E
Sbjct: 298 GSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFEL 357
Query: 340 TLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADP 377
+ + +T + + V+ I+A+
Sbjct: 358 NVFKPVMIANLLNSIRLITDAAYSFRVH-CVEGIKANE 394
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 81.3 bits (200), Expect = 3e-17
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 3/146 (2%)
Query: 56 SIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---EP 112
++ A F ++ + V G L L AS+ K+A D+R LA
Sbjct: 248 AVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEIS 307
Query: 113 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTL 172
+ GSS M K NP + E L L +M ++ E + L
Sbjct: 308 IPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFL 367
Query: 173 SESFLTTDCLLITLQNVLEGLVVYPK 198
L D + ++ G+ +
Sbjct: 368 QSVRLLADGMESFNKHCAVGIEPNRE 393
Score = 62.8 bits (152), Expect = 3e-11
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 242 FTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---EPFESTQIG 298
F ++ + V G L L AS+ K+A D+R LA + G
Sbjct: 255 FVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPG 314
Query: 299 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDS 344
SS M K NP + E L L +M ++ E +
Sbjct: 315 SSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRP 360
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 77.2 bits (189), Expect = 7e-16
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 63 FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGS 120
++ Q R L+ + A I ++A ++R L + E+EEPF Q GS
Sbjct: 202 GLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGS 261
Query: 121 SAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTD 180
SAM +K+NP+ ERL L+R + + + + W ER + S+ R ++ T
Sbjct: 262 SAMPHKKNPITCERLTGLSRMMRA-YVDPSLENIALWHERDISHSSVERYVFPDATQTLY 320
Query: 181 CLLITLQNVLEGLVVYPK 198
+++T NV+ + V +
Sbjct: 321 YMIVTATNVVRNMKVNEE 338
Score = 73.4 bits (179), Expect = 1e-14
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 242 FTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGS 299
++ Q R L+ + A I ++A ++R L + E+EEPF Q GS
Sbjct: 202 GLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGS 261
Query: 300 SAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRF 348
SAM +K+NP+ ERL L+R + + + + W ER + S+
Sbjct: 262 SAMPHKKNPITCERLTGLSRMMRA-YVDPSLENIALWHERDISHSSVER 309
Score = 44.9 bits (105), Expect = 2e-05
Identities = 7/58 (12%), Positives = 30/58 (51%)
Query: 428 QNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485
NV+ + V + ++++ID + ++ +++ +++ G R+ ++ ++ + +
Sbjct: 327 TNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNS 384
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 66.7 bits (162), Expect = 2e-12
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)
Query: 57 IHKKAGFNSSHIIT--GQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---E 111
+ ++ G + V V G + +L ++ K+ D+R LA
Sbjct: 247 LAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEI 306
Query: 112 PFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLT 171
+ + GSS M K NP + E L + + S + + T
Sbjct: 307 TIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYST 366
Query: 172 LSESFLTTDCLLITLQNVLEGLVVYPK 198
L L D + ++ +G+ +
Sbjct: 367 LESINLLADAVASFDAHLAQGIEPNLE 393
Score = 48.3 bits (114), Expect = 1e-06
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 236 VTKKAGFTSSHIIT--GQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---E 290
+ ++ G + V V G + +L ++ K+ D+R LA
Sbjct: 247 LAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEI 306
Query: 291 PFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDS 344
+ + GSS M K NP + E L + + S + +
Sbjct: 307 TIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKP 360
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 65.3 bits (158), Expect = 5e-12
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 69 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM--KEIEEPFESTQIGSSAMAYK 126
I+ QT R +S + SI K A ++R L +E+EE F Q GSSAM +K
Sbjct: 201 ISTQTLQRDRHAHYMAAISLIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHK 260
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
RNP+ SE + LAR + + W ER + S+ R+ L ++ + + +L
Sbjct: 261 RNPIGSENMTGLARVIRGHMLTAYENVP-LWHERDISHSSAERIILPDATIALNYMLNRF 319
Query: 187 QNVLEGLVVYPK 198
N+++ L V+P+
Sbjct: 320 GNIVKNLTVFPE 331
Score = 56.0 bits (134), Expect = 5e-09
Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Query: 211 LSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGA 270
S K SG G + + I+ QT R +S +
Sbjct: 164 ASGVEFGKMSGAVGTYANINPFVESYVCEKLGLQPAPISTQTLQRDRHAHYMAAISLIAT 223
Query: 271 SIHKLATDLRLLAHM--KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNS 328
SI K A ++R L +E+EE F Q GSSAM +KRNP+ SE + LAR + +
Sbjct: 224 SIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHMLTA 283
Query: 329 LATASTQWMERTL 341
W ER +
Sbjct: 284 YENVP-LWHERDI 295
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 61.6 bits (148), Expect = 6e-11
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 417 FLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIR 476
L D +L + VL+ + + + I ++ + LP++ TE + M+K G R ++K +
Sbjct: 316 LLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAK 375
Query: 477 VLSHQA 482
+
Sbjct: 376 EVKALT 381
Score = 52.7 bits (125), Expect = 5e-08
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 92 SIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA 151
+LA ++R L EI E E GSSAM +K NP SER+ SLAR++ +L +
Sbjct: 235 VFERLAVEIREL-SRPEIGEVVEGGG-GSSAMPHKANPTASERIVSLARYVRALTHVAFE 292
Query: 152 TASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
+ W ER L +SAN R+ + E+ L D +L + VL+ + + +
Sbjct: 293 NVA-LWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEE 338
Score = 40.0 bits (92), Expect = 6e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 271 SIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA 330
+LA ++R L EI E E GSSAM +K NP SER+ SLAR++ +L +
Sbjct: 235 VFERLAVEIREL-SRPEIGEVVEGGG-GSSAMPHKANPTASERIVSLARYVRALTHVAFE 292
Query: 331 TASTQWM 337
+
Sbjct: 293 NVALWHE 299
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 57.2 bits (137), Expect = 2e-09
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 3/139 (2%)
Query: 63 FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKE---IEEPFESTQIG 119
S+ + T + V+ L ++ K+A DLRL+A E + Q G
Sbjct: 254 LRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPG 313
Query: 120 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTT 179
SS M K NP+ E + +A + + + E + + + + T
Sbjct: 314 SSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMT 373
Query: 180 DCLLITLQNVLEGLVVYPK 198
+ +N L+G+ +
Sbjct: 374 NVFKSFTENCLKGIKANEE 392
Score = 41.4 bits (96), Expect = 2e-04
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 4/139 (2%)
Query: 242 FTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKE---IEEPFESTQIG 298
S+ + T + V+ L ++ K+A DLRL+A E + Q G
Sbjct: 254 LRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPG 313
Query: 299 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVT 358
SS M K NP+ E + +A + + + E + + F S +T
Sbjct: 314 SSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMT 373
Query: 359 QVKQHGKENDLVDRIRADP 377
V + EN + I+A+
Sbjct: 374 NVFKSFTEN-CLKGIKANE 391
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 51.0 bits (121), Expect = 2e-07
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 3/139 (2%)
Query: 63 FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEE---PFESTQIG 119
+ + T V+V G L L + K+ DLRLL+ Q G
Sbjct: 261 CVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAG 320
Query: 120 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTT 179
SS M K NP+ E + + ++ A ++ + + + + T
Sbjct: 321 SSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILT 380
Query: 180 DCLLITLQNVLEGLVVYPK 198
+ L+ + G+ +
Sbjct: 381 NACYNLLEKCINGITANKE 399
Score = 34.8 bits (79), Expect = 0.020
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 242 FTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEE---PFESTQIG 298
+ + T V+V G L L + K+ DLRLL+ Q G
Sbjct: 261 CVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAG 320
Query: 299 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWM 337
SS M K NP+ E + + ++ A +
Sbjct: 321 SSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQL 359
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 43.7 bits (102), Expect = 4e-05
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 3/111 (2%)
Query: 74 YSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM-KEIEEPFESTQIGSSAMAYKRNPMRS 132
R + + + + + A DL E + GSS M K+NP
Sbjct: 228 SDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDAL 287
Query: 133 ERLCSLARFLMSLHQNSLATAS--TQWMERTLDDSANRRLTLSESFLTTDC 181
E + + + T + + + +++L
Sbjct: 288 ELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLH 338
Score = 43.3 bits (101), Expect = 5e-05
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 2/116 (1%)
Query: 236 VTKKAGFTSSHIITG-QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM-KEIEEPFE 293
+ GF S+ + R + + + + + A DL E +
Sbjct: 210 LAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSD 269
Query: 294 STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFP 349
GSS M K+NP E + + + T + D ++
Sbjct: 270 RVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEG 325
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 29.6 bits (65), Expect = 0.93
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 361 KQHGKENDLVDRIRADPYFAPILN--QMPTLLDPKSFYGRAPEQ 402
+ ++ L + +P + L+ ++ LLDP + G+A
Sbjct: 392 RAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQARVW 435
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 28.9 bits (63), Expect = 1.6
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 365 KENDLVDRIRADPYFAPILN--QMPTLLDPKSFYGRAPEQ 402
++ L D I N Q+ + P+S+ G +Q
Sbjct: 397 EQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQDQ 436
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 262
Score = 26.9 bits (59), Expect = 5.2
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 175 SFLTTDCLLITLQNVLEGLVVYPKETYSIR-IIPDNRLSSHHTTKRSGRPGDGDKVKALD 233
S L DCLL +V E + + R + N L S + G + +
Sbjct: 98 SVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ 157
Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVL 265
+T+ + + +S K DV G+L
Sbjct: 158 DTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 189
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS
coronavirus [TaxId: 227859]}
Length = 168
Score = 26.2 bits (57), Expect = 7.3
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 33 ITGQTYSRKVDVIVTGVLSSL------GASIHKKAG 62
I + S VIV L +++K
Sbjct: 22 IVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATN 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.369
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,647,930
Number of extensions: 71160
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 25
Length of query: 486
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,185,626
Effective search space: 470693522
Effective search space used: 470693522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)