Query psy1432
Match_columns 850
No_of_seqs 332 out of 2370
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 16:51:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 2E-30 6.9E-35 288.0 25.2 444 237-827 10-512 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 3.5E-28 1.2E-32 267.3 35.5 431 235-824 9-478 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.9 3.4E-22 1.2E-26 215.6 34.8 181 237-472 26-206 (451)
4 4gc0_A D-xylose-proton symport 99.9 2.2E-21 7.4E-26 212.9 38.5 147 274-464 54-212 (491)
5 3o7q_A L-fucose-proton symport 99.9 5.2E-20 1.8E-24 198.2 39.9 185 237-470 24-227 (438)
6 2gfp_A EMRD, multidrug resista 99.8 4.2E-19 1.4E-23 188.4 19.4 166 243-467 4-169 (375)
7 2cfq_A Lactose permease; trans 99.8 1.7E-18 5.7E-23 189.2 18.0 170 239-462 7-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 2.6E-11 9E-16 130.6 19.6 178 239-471 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 5.2E-11 1.8E-15 128.0 19.1 167 240-466 259-426 (438)
10 2cfq_A Lactose permease; trans 99.1 7.4E-10 2.5E-14 120.9 16.6 173 241-471 222-398 (417)
11 4gc0_A D-xylose-proton symport 98.9 8.9E-09 3.1E-13 112.8 14.9 185 242-474 279-464 (491)
12 4aps_A DI-OR tripeptide H+ sym 98.8 8.1E-09 2.8E-13 113.4 10.3 184 244-474 288-473 (491)
13 2gfp_A EMRD, multidrug resista 98.6 1.9E-08 6.6E-13 106.5 4.4 164 239-459 199-363 (375)
14 2xut_A Proton/peptide symporte 97.7 0.00097 3.3E-08 73.8 19.0 88 732-819 109-200 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=2e-30 Score=288.01 Aligned_cols=444 Identities=31% Similarity=0.596 Sum_probs=289.5
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceee
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLK------FSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIR 310 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LG------ls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~ 310 (850)
++|.++..+...++..+++|++..+++.|+++++| ++..+++++.+++.++..++.+++|+++||++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------ 83 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------ 83 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 55677888889999999999999999999999999 999999999999999999999999999999768
Q ss_pred eecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhh
Q psy1432 311 VFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTG 390 (850)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g 390 (850)
||+++.++.++..++.++..+.. .+...+++++++.|++.+
T Consensus 84 ---------------------------------~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 84 ---------------------------------KYNTILWLSLIYCVGHAFLAIFE------HSVQGFYTGLFLIALGSG 124 (524)
T ss_dssp ---------------------------------SHHHHHHHHHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------chHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhcc
Confidence 88999888888887777766641 156788889999999999
Q ss_pred chhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 391 GIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 391 ~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+..++..++++|.+| +.++.++.+.+++++...++|+.++|.+++++.+.. +|+..|++.+++.+++++.++
T Consensus 125 ~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 125 GIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 222222355666689999999999999999998763 499999998887777666655
Q ss_pred HhcccccccCCchhhHHHHHHHHHHhhhhcccCCc---------------------------------------hhhhhh
Q psy1432 471 VGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSP---------------------------------------YQKKAH 511 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------------------~~~~~~ 511 (850)
...++.++.++++++..+..+.+....+++..... ...+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (524)
T 2xut_A 197 LGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGA 276 (524)
T ss_dssp SSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGG
T ss_pred HhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccch
Confidence 54444433222222111111111111111100000 000111
Q ss_pred h--hhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHH
Q psy1432 512 W--LDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIP 589 (850)
Q Consensus 512 ~--ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~~~~~~~~~i~~~~~~vi~~l~ili~~p 589 (850)
| ++..++..+..+.++.|+++..+.+++...+++..+.+..+.+..+....+... + .+.+.+...+.+..++..|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 353 (524)
T 2xut_A 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIP 353 (524)
T ss_dssp GTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGG
T ss_pred hhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHH
Confidence 2 121111222223345566655666665566666666666666666654433221 1 2455666666677777788
Q ss_pred HHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCcccccccccccccccccccc
Q psy1432 590 LFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRA 669 (850)
Q Consensus 590 l~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (850)
+.+++.+|.++|++++.++.+.+.+|.++.++++++++..+...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------------------------------ 397 (524)
T 2xut_A 354 FNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM------------------------------------ 397 (524)
T ss_dssp GTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------------------------------
T ss_pred HHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------------
Confidence 88877777777776555666777888888877776665432100
Q ss_pred ccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 670 LFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMF 749 (850)
Q Consensus 670 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~ 749 (850)
. .+...+.+++++.+++.++++++.
T Consensus 398 ------------~-------------------------------------------~~~~~~~~~~~~~~~l~g~~~~~~ 422 (524)
T 2xut_A 398 ------------D-------------------------------------------GGSALSIFWQILPYALLTFGEVLV 422 (524)
T ss_dssp ------------T-------------------------------------------TTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ------------c-------------------------------------------CCCCcCHHHHHHHHHHHHHHHHHH
Confidence 0 000124567788899999999999
Q ss_pred HHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccch------------hHHHHHHHHHHHHHHHHHhhh
Q psy1432 750 AIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQ------------AGEFFLYACLIFLDMLLFYRI 817 (850)
Q Consensus 750 ~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~------------~~~f~l~a~l~~l~~l~~~~~ 817 (850)
.+..++++.+.+|++.||.++|++++..++|+.+++.+.+...+... ...|++.+++.++..++++.+
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887655321 123777888888888888887
Q ss_pred eeeecccccc
Q psy1432 818 TKRYKFVKMQ 827 (850)
Q Consensus 818 ~~~~~~~~~~ 827 (850)
.+++++++.+
T Consensus 503 ~~~~~~~~~~ 512 (524)
T 2xut_A 503 ARSYQMQDHY 512 (524)
T ss_dssp ----------
T ss_pred HHHhccchhh
Confidence 7777665543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.5e-28 Score=267.30 Aligned_cols=431 Identities=21% Similarity=0.311 Sum_probs=298.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCccce
Q psy1432 235 ANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDV-----LKFSEKDATVLYHIFYALCYFVPIIGAILADS-FYGRYRT 308 (850)
Q Consensus 235 ~~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~-----LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr-~lGr~k~ 308 (850)
.+++|.++..+...+++.+++|++.++++.|+++. +|++..+.+++.+++.++..++.+++|+++|| + |
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g---- 83 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-G---- 83 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C----
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c----
Confidence 34677889999999999999999999999999998 99999999999999999999999999999999 7 9
Q ss_pred eeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHH
Q psy1432 309 IRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIG 388 (850)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG 388 (850)
||+++..+.++..++.++++++ ++...+++++++.|+|
T Consensus 84 -----------------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~ 121 (491)
T 4aps_A 84 -----------------------------------ARPAVFWGGVLIMLGHIVLALP-------FGASALFGSIILIIIG 121 (491)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHSC-------CSTTHHHHHHHHHHHH
T ss_pred -----------------------------------chHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHH
Confidence 9999999988888887776653 4557888999999999
Q ss_pred hhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 389 TGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 389 ~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
.++..++..++++|.+| +++++|+.++++++...++|+.++|.+++++.+.. +|++.|++.++..+++++.
T Consensus 122 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 122 TGFLKPNVSTLVGTLYD--EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-------GYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHHSS--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHcC--cccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 44455888999999999999999999999999874 4999999988777777666
Q ss_pred HHHhccccccc---CC----chhhHHHHHHH------------HHHhhhhcccCCchhhhhhhhhh----------hhcc
Q psy1432 469 FVVGKPMYTIR---CP----KKNIILQFLKC------------MFYSLSKKLSSSPYQKKAHWLDY----------AEDE 519 (850)
Q Consensus 469 ~~~~~~~~~~~---~~----~~~~~~~~~~v------------~~~~~~~~~~~~~~~~~~~~ld~----------a~~~ 519 (850)
++...+++.+. ++ ..+...+..+. .......+.. .. ....... ....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~ 268 (491)
T 4aps_A 193 YYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LP--AYINLLTIVAIAIPVFYFAWM 268 (491)
T ss_dssp HHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cc--cchhhhhHHHHHHHHHHHHHH
Confidence 55543332211 11 11111111110 0011111100 00 0000000 0000
Q ss_pred c--CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 520 Y--SPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAART-DSQIFGIHILPDQMQVISPMLSLILIPLFDNCIY 596 (850)
Q Consensus 520 ~--s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~-~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~ 596 (850)
+ ......++++....+.+++...+++..+.+..+.+..+.... +... ...+.+..+..+..++..++.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~- 343 (491)
T 4aps_A 269 ISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW----FPVSWFQSLNPLFIMLYTPFFAWLW- 343 (491)
T ss_dssp C------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS----SCSGGGTTHHHHHHHHHHHHHHHHH-
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc----cCHHHHhccchHHHHHHHHHHHHHH-
Confidence 0 011112334444455666667777888777777766665432 2111 2334445555666666667666533
Q ss_pred hhhhhcccc-ccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCcccccccccccccccccccccccccc
Q psy1432 597 PALDKIRIL-ENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGD 675 (850)
Q Consensus 597 ~~l~r~g~~-~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (850)
+|.++| ....+++.+|.++.++++++++.......
T Consensus 344 ---~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 379 (491)
T 4aps_A 344 ---TAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG----------------------------------------- 379 (491)
T ss_dssp ---HHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC-----------------------------------------
T ss_pred ---HHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------------------
Confidence 444432 24456677888888888877766532110
Q ss_pred ccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 676 RTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLH 755 (850)
Q Consensus 676 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~ 755 (850)
.....+.+++++.+++.+++++...+..++
T Consensus 380 --------------------------------------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 409 (491)
T 4aps_A 380 --------------------------------------------------TSGKVSPLWLVGSWALVILGEMLISPVGLS 409 (491)
T ss_dssp --------------------------------------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred --------------------------------------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 001235567778889999999999999999
Q ss_pred HhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhheeeeccc
Q psy1432 756 FSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQAGEFFLYACLIFLDMLLFYRITKRYKFV 824 (850)
Q Consensus 756 ~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~~~f~l~a~l~~l~~l~~~~~~~~~~~~ 824 (850)
++.+.+|++.||.++|+.++...+|..+++.+.+...+.+..+.|..++++.++..++++.+.++.+++
T Consensus 410 ~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 410 VTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888777777888888888888888888776665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=3.4e-22 Score=215.59 Aligned_cols=181 Identities=11% Similarity=-0.009 Sum_probs=146.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.++.++..+...++.....+.+...+|.+. +++ ++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g------------ 90 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N------------ 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-C------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-C------------
Confidence 345666677677777777666666666655 556 9999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++.++.++..++.+++++.... .++...+++++++.|++.+...++.
T Consensus 91 ---------------------------~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 91 ---------------------------PRVFLPAGLILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHhhhhc---cccHHHHHHHHHHHHHHhhhccchH
Confidence 8999999999888888887761100 1344778889999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.++++|.+| +++|+++.++.+...++|..++|.+++++.+..+ +|+..|++.+++.++..+..+..
T Consensus 141 ~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g------~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 141 GRTMVHWWS----QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN------DWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHTTCT----TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC------CSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999997 7889999999999999999999999999887631 39999999887666655444333
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=2.2e-21 Score=212.92 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHH
Q psy1432 274 EKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSF 353 (850)
Q Consensus 274 ~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i 353 (850)
....+++.+++.++..++.+++|+++||+ | ||++++++.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-G---------------------------------------Rk~~l~~~~~ 93 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-G---------------------------------------RRDSLKIAAV 93 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-C---------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------------------------------CHHHHHHHHH
Confidence 45667888999999999999999999999 9 9999999999
Q ss_pred HHHHHHHHHHHhhhh-----------cccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHH
Q psy1432 354 VYVLGNILLCLGAVP-----------TLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYF 422 (850)
Q Consensus 354 ~~~lg~ll~al~a~p-----------~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~ 422 (850)
++.++.+++++.... ....++...++++|++.|+|.|+..+..+++++|..| +++|+...++.+.
T Consensus 94 l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p----~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 94 LFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP----AHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC----GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----HHhhhhhHHhhhh
Confidence 999999888753211 0123567889999999999999999999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-CCCccchHHHHHHHHHHHH
Q psy1432 423 IINIGGFLGMIFIPMIRKSIPCY-GGESCYALGFVVPAVLMVL 464 (850)
Q Consensus 423 ~~~iGg~iap~I~~~I~~~~g~~-g~~~~w~~~f~I~a~l~lv 464 (850)
...+|..+++.++..+....+.. ....+|+..+.+..+..++
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 99999999888887766542210 0112466666555443333
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.89 E-value=5.2e-20 Score=198.19 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=144.9
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++.+..+....++..+........+|. +.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g------------ 89 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-S------------ 89 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-C------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c------------
Confidence 4556666666666666666655555554 6788999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+... .++.+.+++++++.|+|.+...+..
T Consensus 90 ---------------------------~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 90 ---------------------------YKAGIITGLFLYALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhH
Confidence 999999999988888887733211 1566889999999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCC------------------CCccchHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR-KSIPCYG------------------GESCYALGFVV 457 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~-~~~g~~g------------------~~~~w~~~f~I 457 (850)
.++++|.+| +++|++..++++...++|..++|.+++++. ...+..+ ...+|++.|++
T Consensus 139 ~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 139 NPFVTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHHHHSSC----STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 999999998 788999999999999999999999999998 4321000 00018999877
Q ss_pred HHHHHHHHHHHHH
Q psy1432 458 PAVLMVLALVMFV 470 (850)
Q Consensus 458 ~a~l~lvalv~~~ 470 (850)
.+++.++..+.++
T Consensus 215 ~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 215 IVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6665555444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.81 E-value=4.2e-19 Score=188.40 Aligned_cols=166 Identities=12% Similarity=0.105 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhh
Q psy1432 243 LILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHI 322 (850)
Q Consensus 243 ~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~ 322 (850)
......++..+........+|.+ .+++|.+..+.+++.+++.+...++.+++|+++||+ |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------------ 63 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-G------------------ 63 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-C------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------------
Confidence 34445556666666666666654 578999999999999999999999999999999999 9
Q ss_pred hhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHh
Q psy1432 323 FYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGE 402 (850)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae 402 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.+...+...++.+|
T Consensus 64 ---------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~ 115 (375)
T 2gfp_A 64 ---------------------RRPVILVGMSIFMLATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRD 115 (375)
T ss_dssp ---------------------CCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8899999988888888777664 355788889999999999999999999999
Q ss_pred hcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 403 QFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 403 ~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
.+| +++|++..+.++...++|..++|.+++++.+.. +|+..|++.++..++..+
T Consensus 116 ~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 116 LYE----RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-------NWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHH----TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-------HHHHHHHHHHHHHHHHHC
T ss_pred HCC----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-------cHHHHHHHHHHHHHHHHH
Confidence 997 678999999999999999999999999988763 499999887765554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.78 E-value=1.7e-18 Score=189.16 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++......++...++....+++|.|+++++|++..+++++.+++.++..++.+++|+++||+ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-G-------------- 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-G-------------- 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-T--------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 4566666666666667777778999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHH-hhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCL-GAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al-~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.+++.++...... ...+.... ..+.++++.+++.+...+...
T Consensus 72 -------------------------rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~ 122 (417)
T 2cfq_A 72 -------------------------LRKYLLWIITGMLVMFAPFFIFIFGPLLQY----NILVGSIVGGIYLGFCFNAGA 122 (417)
T ss_dssp -------------------------TCCHHHHHHHHTTSCHHHHHHHTHHHHHHT----TCCHHHHGGGSSTTHHHHTTH
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhH
Confidence 888887776654432211110 00010000 011222232332222222223
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLM 462 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~ 462 (850)
+...+..+ +..++++...+..+...++|+.++|.+++++.+. +|+..|++.++..
T Consensus 123 ~~~~~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--------~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 123 PAVEAFIE--KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--------NNQFVFWLGSGCA 177 (417)
T ss_dssp HHHHHHHH--HHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--------CSHHHHTTTTTTT
T ss_pred HHHHHHHH--HhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--------chhHHHHHHHHHH
Confidence 33333332 1123455566777777789999999999998764 3888888765543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.34 E-value=2.6e-11 Score=130.60 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-Cccceeeeecccch
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFY-GRYRTIRVFSFDAT 317 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~l-Gr~k~l~~~~~~~~ 317 (850)
+.++..+...++....++++..++|.|+.+.+|++..+++++.++..++..++.+++|+++||+. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~------------- 318 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG------------- 318 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Confidence 56777778888888999999999999999889999999999999999999999999999999963 5
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHH-HHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYV-LGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~-lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+.+.++.++.. ++.++..+ ....+...+.+...+.|++.++..+..
T Consensus 319 --------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 319 --------------------------NRGATGVFFMTLVTIATIVYWM-----NPAGNPTVDMICMIVIGFLIYGPVMLI 367 (451)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHTTS-----CCTTCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred --------------------------CchhHHHHHHHHHHHHHHHHHH-----hcccCHHHHHHHHHHHHHHHhchHHHH
Confidence 6666666555333 22222211 111244666677777788888888888
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINI-GGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~i-Gg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
.++..|.+| ++.|+++.++++...++ |+.++|.+.+++.+..| |+..|++.+++.+++.+..+.
T Consensus 368 ~~~~~~~~~----~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 368 GLHALELAP----KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-------WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHTSC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHHHH
Confidence 899999997 77899999999999999 99999999999998743 888998888777776665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=5.2e-11 Score=128.05 Aligned_cols=167 Identities=11% Similarity=0.090 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLY-LRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~Y-Lt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
.++..+...++.....+.+..+++.| +++.+|++..+++.+..+..++..++.+++|+++||+ |
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~-------------- 323 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-A-------------- 323 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 46666667777778888888999999 8888899999999999999999999999999999998 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++..+.++..++.++..+. ++.. ..+...+.+++.+...|...+
T Consensus 324 -------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~g~~~~~~~~~~~~ 370 (438)
T 3o7q_A 324 -------------------------PHKVLAAYALIAMALCLISAFA-------GGHV-GLIALTLCSAFMSIQYPTIFS 370 (438)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHC-------CHHH-HHHHHHHHHHHHTTHHHHHHH
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHc-------CCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777666665554442 2222 344456778888888999999
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
+..|.+| ++ ++.+.++.. ...+|+.++|.+.+++.+..| +++.+|++.+++.++.+
T Consensus 371 ~~~~~~~----~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g------~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 371 LGIKNLG----QD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG------NIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHSSCG----GG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT------SSGGGGHHHHHHHHHHH
T ss_pred HHHhhcc----cc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHH
Confidence 9999996 22 555555555 556999999999999998843 37888887665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.12 E-value=7.4e-10 Score=120.86 Aligned_cols=173 Identities=6% Similarity=0.052 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKF---SEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGl---s~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
++......++....++.+..++|.|+.+.++. +....+.+..+..+...++.+++|+++||+ |
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------- 287 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-G------------- 287 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 44333333444455556667899999776653 234456677777777888899999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.++..++.++..+. ++...+++...+.+++.+...+...
T Consensus 288 --------------------------~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 288 --------------------------GKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666555443333221 2334455555556666666667778
Q ss_pred HHHHhhcCCCcccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSV-YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~-~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
++.+|.+| ++.|+++.++ ++....+|+.++|.++|++.+.. ++...|.+.+++.+++.+..+.
T Consensus 335 ~~~~~~~p----~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-------g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 335 KYITSQFE----VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHSC----HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCC----HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 7889998888 47777899999999999998863 3788888877776666655443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.92 E-value=8.9e-09 Score=112.82 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhh
Q psy1432 242 YLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYH 321 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~ 321 (850)
.......++..+..+....+...++.+..+.+.........+..++..++.++++++.||+ |
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-G----------------- 340 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-G----------------- 340 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-----------------
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-c-----------------
Confidence 3333344444444444444555566678899998888888888889999999999999999 9
Q ss_pred hhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHH-hhchhhHHHHHH
Q psy1432 322 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIG-TGGIKPCVAALC 400 (850)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG-~g~~~~~~~al~ 400 (850)
||+.++.+.....++.+........ ..+. ...+++..+...+ ..+..|..+.+.
T Consensus 341 ----------------------rr~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
T 4gc0_A 341 ----------------------RKPLQIIGALGMAIGMFSLGTAFYT--QAPG-IVALLSMLFYVAAFAMSWGPVCWVLL 395 (491)
T ss_dssp ----------------------SHHHHHHHHHHHHHHHHHHHHHHHT--TCCH-HHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred ----------------------CcchhccchHHHHHHHHHHHHHHhc--ccch-HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888877666665555443221 1122 2222333333222 223446778999
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
+|.|| .+.|+++.++.+....+++.+++.+.+.+.+...... ..++...|++.+++.+++.+..++..|
T Consensus 396 ~E~fP----t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 396 SEIFP----NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHSSC----TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 99998 7889999999999999999999888877654310000 012455677766666666655544444
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.82 E-value=8.1e-09 Score=113.36 Aligned_cols=184 Identities=9% Similarity=-0.007 Sum_probs=126.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhh
Q psy1432 244 ILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIF 323 (850)
Q Consensus 244 i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~ 323 (850)
.+...++....++...++++.|+.+.++.+....+.+.....+...++.++.|+++||+ ||++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~-------------- 352 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPS-------------- 352 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC-----------------
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCC--------------
Confidence 33344444555556667889999998898877778888888888889999999999998 843222
Q ss_pred hhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhc--ccCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy1432 324 YALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPT--LALPTIKTTLLGLIFIGIGTGGIKPCVAALCG 401 (850)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~--l~~~~~~lliialil~glG~g~~~~~~~al~a 401 (850)
+.+.+..+.++..++.++..+..... ....+...+.++.++.+++.+...+...++..
T Consensus 353 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 412 (491)
T 4aps_A 353 --------------------SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTT 412 (491)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22223355554444444443321110 01123356667778888998888899999999
Q ss_pred hhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 402 EQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 402 e~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
|.+| ++.|+.+.++++...++|+.++|.+.+++.+. ++...|.+.+++.+++.+.++...+
T Consensus 413 ~~~p----~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 413 KLAP----KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--------SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHTT----TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--------STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 77889999999999999999999998887654 3566777766666666555554433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.60 E-value=1.9e-08 Score=106.46 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++......++.....+.+..++|.|+++.+|++..+++.+.....++..++.++.|+++||+ |
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~-------------- 263 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-S-------------- 263 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-H--------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence 4566677777788888888999999999999999999999999999999999999999999998 7
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHH-HHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFV-YVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~-~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
+ .+..+... ...+..+..+... ..++...+++...+.+++.+...+...
T Consensus 264 -------------------------~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~ 313 (375)
T 2gfp_A 264 -------------------------T--LMWQSVICCLLAGLLMWIPDWF---GVMNVWTLLVPAALFFFGAGMLFPLAT 313 (375)
T ss_dssp -------------------------H--HHHHHHHHHHHTSSSSSHHHHH---HHHHHHHHHHHHHHHHHHHHHTSSTTH
T ss_pred -------------------------H--HHHHHHHHHHHHHHHHHHHhhh---ccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4 22222221 1111111111100 011335556677777888888889999
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPA 459 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a 459 (850)
++..|.+| ++|+++.+..+...++|+.++|.+.+++.+.. +|...+.+.+
T Consensus 314 ~~~~~~~p-----~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------~~~~~~~~~~ 363 (375)
T 2gfp_A 314 SGAMEPFP-----FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-------QGSLGLLMTL 363 (375)
T ss_dssp HHHHTHHH-----HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHhCC-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-------cccHHHHHHH
Confidence 99999984 47899999999999999999999999987652 3666666543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.74 E-value=0.00097 Score=73.79 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHH---HHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHH
Q psy1432 732 LIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAA---WQLSVALGNLIIICIEQLRGYVGQ-AGEFFLYACLI 807 (850)
Q Consensus 732 ~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl---~~~~~~lG~~i~~~i~~~~~~~~~-~~~f~l~a~l~ 807 (850)
.+.++...++.|++.++..|...+++.+.+|++.|+...++ ++....+|..+++.+.+......+ .+.|.+.+++.
T Consensus 109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~ 188 (524)
T 2xut_A 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566677889999999999999999999999999876666 888899999999887766554333 44566666666
Q ss_pred HHHHHHHhhhee
Q psy1432 808 FLDMLLFYRITK 819 (850)
Q Consensus 808 ~l~~l~~~~~~~ 819 (850)
++..++++...+
T Consensus 189 ~~~~~~~~~~~~ 200 (524)
T 2xut_A 189 FVATVFFWLGRK 200 (524)
T ss_dssp HHHHHHHHSSSS
T ss_pred HHHHHHHHHhcc
Confidence 666655554433
Done!