RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1432
(850 letters)
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 246 bits (631), Expect = 1e-72
Identities = 112/452 (24%), Positives = 186/452 (41%), Gaps = 91/452 (20%)
Query: 230 KEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCY 289
+ + +P+ I I+ E CERFSF G+R +L+ +L L S
Sbjct: 3 SPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSI--------------- 47
Query: 290 FVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIR 349
L + A ++H F YF P++G +AD F+G+Y TI
Sbjct: 48 -----PEELRGA-------------VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89
Query: 350 VFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQ 409
S +Y +G+ L + GL I +G+GGIKP V++ G+QF +
Sbjct: 90 WLSLIYCVGHAFLAIFEHSVQGF------YTGLFLIALGSGGIKPLVSSFMGDQFDQSNK 143
Query: 410 RFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469
++ F ++YF IN G F + +P++ K+ A+ F +P VLM +A V F
Sbjct: 144 S-LAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------GAAVAFGIPGVLMFVATVFF 195
Query: 470 VVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSP------------------------ 505
+G+ Y P+ FL + +L K+
Sbjct: 196 WLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTL 255
Query: 506 -----------------YQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLF 548
+ L+ A + + +++VL IL +F + FWSLF
Sbjct: 256 GIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLF 315
Query: 549 DQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENP 608
DQ S+W QA + P MQ ++P+L ++LIP + +YPA++++ +
Sbjct: 316 DQKASTWILQAND---MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA 372
Query: 609 LRRMVCGGCIAGFAFISAGYVELNLQENPPES 640
LR+M G I G ++I G ++L + S
Sbjct: 373 LRKMGAGIAITGLSWIVVGTIQLMMDGGSALS 404
Score = 67.0 bits (164), Expect = 1e-11
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 725 SPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLII 784
G + + + + Y L++ GEV+ + GL F+++QAP++MK ++ W LSV +GNL +
Sbjct: 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWV 457
Query: 785 ICIEQL------------RGYVGQAGEFFLYACLIFLDMLLFYRITKRYKFVKMQLDESS 832
+ G A + F +A L ++F + Y+ +
Sbjct: 458 LLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQATG 517
Query: 833 S 833
S
Sbjct: 518 S 518
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 136 bits (344), Expect = 4e-34
Identities = 80/421 (19%), Positives = 144/421 (34%), Gaps = 97/421 (23%)
Query: 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDV-----LKFSEKDATVLYHIFYALCYFVP 292
P + + E ERFS+ G+R +L Y+ + L + A + I+ ++ Y
Sbjct: 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG 71
Query: 293 IIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS 352
IG +AD G +
Sbjct: 72 TIGGFVADRIIGARPAV------------------------------------------- 88
Query: 353 FVYVLGNILLCLGAVPTLALPTIKTTL-LGLIFIGIGTGGIKPCVAALCGEQFCVPEQRF 411
G +L+ LG + LALP + L +I I IGTG +KP V+ L G + ++R
Sbjct: 89 ---FWGGVLIMLGHI-VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR- 143
Query: 412 YLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471
+ FS++ F IN+G F+ + + +++ G Y + F + A+ M + L+++
Sbjct: 144 -RDAGFSIFVFGINLGAFIAPLIVGAAQEA---AG----YHVAFSLAAIGMFIGLLVYYF 195
Query: 472 GKPMY--------TIRCPKKNIILQFLKCMFYSLS------------------KKLSSSP 505
G T + + +K +
Sbjct: 196 GGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTI 255
Query: 506 YQKKAHWLDYAEDEYSPRLISDMKTVLAILFV-FIPLPLFWSLFDQLGSSWTFQAAR-TD 563
+A S ++ S + FI LFW++ +Q AA D
Sbjct: 256 VAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVD 315
Query: 564 SQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAF 623
S F Q ++P+ ++ P F ++ A K + + + G AG +F
Sbjct: 316 SSWFP----VSWFQSLNPLFIMLYTPFF-AWLWTAWKKNQP--SSPTKFAVGLMFAGLSF 368
Query: 624 I 624
+
Sbjct: 369 L 369
Score = 42.0 bits (99), Expect = 6e-04
Identities = 16/91 (17%), Positives = 44/91 (48%)
Query: 732 LIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLR 791
+++V + L+ +GE++ + GL + AP++ + ++ W LS ++G+ + + L
Sbjct: 386 PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445
Query: 792 GYVGQAGEFFLYACLIFLDMLLFYRITKRYK 822
+ F + + ++ ++KR +
Sbjct: 446 NAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 2e-09
Identities = 89/605 (14%), Positives = 169/605 (27%), Gaps = 227/605 (37%)
Query: 165 LNHKHDYKIRLTGKLKSEKSLEVSKQEHAKTFEGVPVEYGMNQIDVVLKDNLDNSSDIPV 224
L+H G L E L V + +Q L++ + P
Sbjct: 11 LSH---------GSL--EHVLLVPTASF----------FIASQ----LQEQFNKILPEPT 45
Query: 225 NLSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIF 284
+ + + P + E +F L Y+ +++ S+
Sbjct: 46 -----EGFAADDEPTTP-----AELVGKF--------LG-YVSSLVEPSKVGQ------- 79
Query: 285 YALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY----HIFYALCYFVPIIGAILADS 340
F ++ L + F+ L H A + L
Sbjct: 80 -----FDQVLNLCLTE-------------FENCYLEGNDIHALAA--KLLQENDTTLVK- 118
Query: 341 FYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400
I+ + + A P K + L F +G G + + A+
Sbjct: 119 ---TKELIKNY------------ITARIMAKRPFDKKSNSAL-FRAVGEGNAQ--LVAIF 160
Query: 401 GEQ----FCVPEQRFYLERFFSVYY-----FIINIGGFLGMIFIPMIRKSIPCYGGESCY 451
G Q E L + Y+ I L +IR ++ E +
Sbjct: 161 GGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFSAETL----SELIRTTLDA---EKVF 209
Query: 452 ALGFVVPAVLM---------VLALVMFVVGKPMYTIRCPKKNII--LQFLKCMFYSLSKK 500
G + L L + I CP +I +Q + +K
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSI---------PISCP---LIGVIQL--AHYVVTAKL 255
Query: 501 LSSSPYQKKAHW---LDYAEDEYSPRLISDMKT-----VLAILFVFIPLPLFWSLFDQLG 552
L +P + +++ +++ + I++ + V + + LF+ +G
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV---LFF-----IG 307
Query: 553 SSWTFQAARTDSQIFGIHILPDQMQVI---------SPMLSLI------LIPLFD--NCI 595
R + + LP + SPMLS+ + + N
Sbjct: 308 -------VRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 596 YPALDKIRI-LENPLRRMVCGGCIAGFAFISAGYVELNL----------QENPPESTTKL 644
PA ++ I L N + +V ++G S + L L Q P S KL
Sbjct: 360 LPAGKQVEISLVNGAKNLV----VSGPP-QSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 645 ECYNGF-----------MKNATE------------WSKNSLSFMGNRALFLTGD----RT 677
+ N F + A++ ++ + ++ T D R
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----PVYDTFDGSDLRV 470
Query: 678 NRKNI 682
+I
Sbjct: 471 LSGSI 475
Score = 41.6 bits (97), Expect = 0.001
Identities = 74/396 (18%), Positives = 113/396 (28%), Gaps = 164/396 (41%)
Query: 41 YQQ--DITPFLRKPKLVLINTLPCVVSVVNDITYLDEME-SGDILTYANVTQ-GNY---- 92
+ Q +I +L P + P D YL + S ++ V Q +Y
Sbjct: 209 FTQGLNILEWLENP-----SNTP-------DKDYLLSIPISCPLIG---VIQLAHYVVTA 253
Query: 93 -----TFNTIAPRDCGTIFFDKKEDCAKTFTIISQPNTDAVVI-MS------IQN--KKL 138
T + G ++ +++ AV I + + K +
Sbjct: 254 KLLGFTPGELRSYLKGAT------GHSQG--LVT-----AVAIAETDSWESFFVSVRKAI 300
Query: 139 DINFY-----QESF----LPTS----------GSNKPQLKIIAMNLNHKHDYKIRLT-GK 178
+ F+ E++ LP S G P L I + DY + T
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY-VNKTNSH 359
Query: 179 LKSEKSLEVSKQEHAKTFEGVPVEYGMNQIDVVLKDNLDNSSDIPVNLSLMKEMTSANYP 238
L + K +E+S L N NL + + P
Sbjct: 360 LPAGKQVEIS---------------------------LVNG---AKNLVV------SGPP 383
Query: 239 KSIY-LILT--------------IEFCER---FSFCGLRTML---SLYLRDV-------- 269
+S+Y L LT I F ER FS L S L
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 270 ----LKFSEKDATV-LYHIFYA--LCYFVPIIGAILADSFYGRYRTIRVF-----SFDAT 317
+ F+ KD + +Y F L I + D + V F AT
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII----RLPVKWETTTQFKAT 499
Query: 318 VLYHIFYALCYFVP----IIGAILADSFYGR-YRTI 348
HI L F P +G + + G R I
Sbjct: 500 ---HI---LD-FGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 35.4 bits (81), Expect = 0.10
Identities = 41/234 (17%), Positives = 70/234 (29%), Gaps = 82/234 (35%)
Query: 82 LTYANVTQGNYT----FNTIAPRDCGTIFFDKKEDCAKT-FTIISQP------------- 123
+ + + G F I F +K + T FT QP
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT---QPALTLMEKAAFEDL 1747
Query: 124 ------NTDAVV----------------IMSIQNKKLDINFY----QESFLPTSGSNKPQ 157
DA +MSI++ +++ FY + +P +
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIES-LVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 158 LKIIAMNLNHKHDYKIRLTGKLKSEKSLEVSKQEHAKTFEGVPVE---YGMN----QIDV 210
+IA+N R+ E V ++ +T G VE Y N Q V
Sbjct: 1807 YGMIAINPG-------RVAASFSQEALQYVVERVGKRT--GWLVEIVNY--NVENQQY-V 1854
Query: 211 V--LKDNLDNSSDIPVNLSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTML 262
LD +++ L+ +K + I + IE + S + L
Sbjct: 1855 AAGDLRALDTVTNV---LNFIKL-------QKIDI---IELQKSLSLEEVEGHL 1895
Score = 33.5 bits (76), Expect = 0.42
Identities = 67/417 (16%), Positives = 119/417 (28%), Gaps = 164/417 (39%)
Query: 68 NDITYLDEMESGDILTYANVTQGNYTFNTIAPRDCGTIFFDKKEDCAKTFTIISQPNTDA 127
N Y +E+ Y T++ + D A+T + + + DA
Sbjct: 165 NTDDYFEELRD----LYQ-------TYHVLV-GD----LIKF---SAETLSELIRTTLDA 205
Query: 128 VVIMSIQNKKLDINFYQESFL--PTSGSNKPQL-------KIIAM-NLNHKHDYKIRLTG 177
+ + + L+I +L P++ +K L +I + L H Y +
Sbjct: 206 EKVFT---QGLNI----LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---YVVTA-- 253
Query: 178 KLKSEKSLEVSKQEHAKTFEGVPVEYGMNQIDVVLKDNLDNSSDIPVNLSLMKEMTSANY 237
K L + E +G +S + +++ + + ++
Sbjct: 254 -----KLLGFTPGELRSYLKGA----------------TGHSQGLVTAVAIAETDSWESF 292
Query: 238 PKSIYLILTIEFCERFSFCGLRT---------------------------MLS---LYLR 267
S+ +T+ F F G+R MLS L
Sbjct: 293 FVSVRKAITVLF-----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 268 DVLKFSEKDATVL---YHIFYALCYFVPIIGA---ILA---DSFYG---RYRTIRV---- 311
V + K + L + +L + GA +++ S YG R +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISL-----VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 312 ------FS-----FDATVL-----YHIFYALC-YFVPIIGAILAD------SFYGRYRTI 348
FS F L +H VP I D SF + I
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFH-----SHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 349 RVFSFV----------YVLGNILLCLGAVP---TLALPTIKTTLLGLIFIGIGTGGI 392
V+ + I+ C+ +P T + L F G GG
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI--LDF---GPGGA 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 6e-08
Identities = 54/400 (13%), Positives = 103/400 (25%), Gaps = 122/400 (30%)
Query: 33 DVSQDLLSYQQDITPFLRKPKLVLINTLPCVVSVVNDIT--YLDEMESGDILTYANVTQG 90
+ + Y+ DI ++ C V D+ L + E I+ + G
Sbjct: 10 ETGEHQYQYK-DILSVFEDA---FVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 91 NY-TFNTIAPRDCGTIFFDKKEDCAKTFTI-ISQPN----TDAVVIMSIQNKKLDINFYQ 144
F K+E+ + F + + N + Q + Y
Sbjct: 64 TLRLF---------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYI 113
Query: 145 ESFLPTSGSNKP-------------QLKIIAMNLNHKHDYKIRLTGKLKSEKS---LEVS 188
E N+ +L+ + L + + + G L S K+ L+V
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVC 171
Query: 189 KQEHAKTFEGVPVEYGMN-------------------QIDVVLKDNLDNSSDIPVNLSLM 229
+ + + +N QID D+SS+I + + +
Sbjct: 172 LSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 230 KE-----MTSANYPKSIYLIL----TIEFCERFSF-CGLRTMLS---------------- 263
+ + S Y L+L + F+ C + +L+
Sbjct: 231 QAELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTT 287
Query: 264 -LYLRDVLK-FSEKD-----ATVLYHIFYAL----CYFVP----IIGAILAD-----SFY 303
+ L + + L L P II + D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 304 GRY------RTIRVF--SFDATVLYHIFYALCYF---VPI 332
I + +F L F I
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Score = 50.6 bits (120), Expect = 2e-06
Identities = 100/644 (15%), Positives = 186/644 (28%), Gaps = 204/644 (31%)
Query: 231 EMTSANYP-KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATV--------LY 281
E Y K I + F + F + + +L E D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 282 HIFYALC--------YFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPII 333
+F+ L FV +L ++ I+ +++ ++
Sbjct: 66 RLFWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMY---------- 112
Query: 334 GAILADSFYGR-YRTIRVFS--FVYVLGNILLCLGAVPTLALPTIKTTLLGL---IFIGI 387
R Y +VF+ V L L ++ LL L + I
Sbjct: 113 -----IEQRDRLYNDNQVFAKYNVSRLQPYL------------KLRQALLELRPAKNVLI 155
Query: 388 -GTGGI-KPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCY 445
G G K VA + V + + F +++ +N+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKV-QCKM----DFKIFW--LNLK------------------ 190
Query: 446 GGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRC-PKKNIILQF--LKCMFYSLSKKLS 502
+C + P ++ + + P +T R NI L+ ++ L + L
Sbjct: 191 ---NCNS-----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLK 239
Query: 503 SSPYQKKAHWLDYAEDEYSPRLISDM----KTVLAILFVFIPLPLFWSLFDQLGS----- 553
S PY+ L + + + + K +L F + D L +
Sbjct: 240 SKPYENCLLVLL---NVQNAKAWNAFNLSCKILLTTRFK--------QVTDFLSAATTTH 288
Query: 554 ------SWTFQAARTD---SQIFGIHI--LPDQMQVISPM-LSLI------LIPLFDNCI 595
S T + LP ++ +P LS+I + +DN
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 596 YPALDKI-RILE------NP--LRRMVCGGCIAGFA-F-----ISAGYVEL---NLQENP 637
+ DK+ I+E P R+ + F I + L ++ ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRK-----MFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 638 PESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEV 697
+ + + + K S + + L L N +
Sbjct: 404 VMVVVN-KLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHR------------- 447
Query: 698 KNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYV---LMSIGE----VMFA 750
SI ++ NI F L P + Y ++ L +I +F
Sbjct: 448 ------SIVDHYNIPKTFDSDD----LIPPYLDQYFY---SHIGHHLKNIEHPERMTLFR 494
Query: 751 IAGLHFSFTQAP-RSMKTVTIAAWQLSVALGNLIIICIEQLRGY 793
+ L F F + R T AW S ++ N + QL+ Y
Sbjct: 495 MVFLDFRFLEQKIRHDST----AWNASGSILNTLQ----QLKFY 530
Score = 43.7 bits (102), Expect = 3e-04
Identities = 71/459 (15%), Positives = 140/459 (30%), Gaps = 147/459 (32%)
Query: 473 KPMYTIRC------PKKNIILQ----FLK-------CMFYSLSKKLSSSPYQKKAHWLDY 515
+P +R P KN+++ K C+ Y + K+ K WL+
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KIFWLNL 189
Query: 516 AEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQ 575
SP + L +L L Q+ +WT ++ + + IH + +
Sbjct: 190 KNCN-SPETV------LEML---------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 576 MQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVC---------GGC--------I 618
++ L+ ++NC L +L N V C
Sbjct: 234 LR------RLLKSKPYENC----LL---VLLN-----VQNAKAWNAFNLSCKILLTTRFK 275
Query: 619 AGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLS---FMGN-RALFLTG 674
F+SA ++ + T E + +K + L N R L +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 675 ----DRTNR-KNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRT 729
D N ++ N ++ SS+ + + ++F +L + P
Sbjct: 335 ESIRDGLATWDNWKHVNC-------DKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPS-- 384
Query: 730 VKLIYMVPQYVL------MSIGEVMFAIAGLH-FSFTQAPRSMKTVTIAAWQLSV----- 777
+P +L + +VM + LH +S + T++I + L +
Sbjct: 385 AH----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 778 ---ALGNLII-------------ICIEQLRGY-----------VGQAGEFFLYACLIFLD 810
AL I+ + L Y + L+ ++FLD
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLD 499
Query: 811 MLLFYRITKRYKFVKMQLDESSSLLVPGKGKNDILFNLN 849
++F++ ++ S+ + L L
Sbjct: 500 ----------FRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Score = 42.9 bits (100), Expect = 4e-04
Identities = 44/292 (15%), Positives = 86/292 (29%), Gaps = 74/292 (25%)
Query: 55 VLINTLPCVVSVVNDITYLDEMESGDILTYANVTQGNYTFNTIAPRDCGT------IFFD 108
L +S+ + L E +L + + T I +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLL--LKYL--DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 109 KKEDCAKTFTIISQPNTDAV--VI-MSIQNKKLDINFYQESF-----LPTSGSNKPQ--L 158
D T+ N D + +I S+ L+ Y++ F P ++ P L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFP-PSAHIPTILL 392
Query: 159 KII-----------AMNLNHK---------------HDYKIRLTGKLKSEKSLE---VSK 189
+I +N HK + L KL++E +L V
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 190 QEHAKTFE----GVPVE---------YGMNQIDVVLKDNLDNSSDIPVNLSLMK-----E 231
KTF+ P + + I+ + + + ++ ++ +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 232 MTSANYPKSIY-LILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYH 282
T+ N SI + ++F + + C + +L F K L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLIC 561
Score = 29.1 bits (64), Expect = 7.8
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 23/69 (33%)
Query: 11 FQILPWIR------FVSWRTPSGEWYVVDVSQDLLSYQQDITP--------------FLR 50
F ++ +W +++ Q L Y+ I FL
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGS---ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 51 KPKLVLINT 59
K + LI +
Sbjct: 554 KIEENLICS 562
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.13
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 18/37 (48%)
Query: 499 KKLSSSPYQKKAHWLD-YAEDEYSPRLISDMKTVLAI 534
KKL +S L YA+D +P LAI
Sbjct: 23 KKLQAS--------LKLYADDS-AP--------ALAI 42
Score = 30.3 bits (67), Expect = 1.5
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 11/33 (33%)
Query: 132 SIQNKKLD--INFYQESFLPTSGSNKPQLKIIA 162
++ KKL + Y S P L I A
Sbjct: 21 AL--KKLQASLKLYA----DDSA---PALAIKA 44
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 33.9 bits (78), Expect = 0.22
Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 16/158 (10%)
Query: 322 IFYALCYFVPIIGAILA----DSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKT 377
Y L + I G +L D + R F+ ++ + P
Sbjct: 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351
Query: 378 TLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFL-GMIFIP 436
++ + F+ G + A + + G+L G +
Sbjct: 352 CMIVIGFLIYGPVMLIGLHALELAPKKAA-----------GTAAGFTGLFGYLGGSVAAS 400
Query: 437 MIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474
I + G + + ++L V+ L++ ++G+
Sbjct: 401 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438
>3ve2_A TBP-2, transferrin-binding protein 2; lipoprotein, transferrin
receptor, iron acquisition, vaccine candidate; 2.14A
{Neisseria meningitidis serogroup B} PDB: 3ve1_A 3v8u_A
Length = 658
Score = 30.8 bits (68), Expect = 2.3
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 625 SAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNI-E 683
NL T+ + ++ + +++FL G+RT+ K I
Sbjct: 446 EVEVCCSNLNYLKYGMLTRKNSKSAMQAGGNSSQADAKTEQVEQSMFLQGERTDEKEIPT 505
Query: 684 NGN---LGGTSGNMTEVKNGNSSSITNNKNITSKFQV 717
+ N G G++ + + ++ ++F V
Sbjct: 506 DQNVVYRGSWYGHIANGTSWSGNASDKEGGNRAEFTV 542
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 29.5 bits (67), Expect = 5.3
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 309 IRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSF-VYVLGNILLCLGAV 367
V + I + L GA A R+ T+ S +L +L+ +
Sbjct: 227 GAVLGLSSMT-VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDW 285
Query: 368 PTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399
+ + T L+ G G + P +
Sbjct: 286 --FGVMNVWTLLVPAALFFFGAGMLFPLATSG 315
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 29.1 bits (65), Expect = 5.9
Identities = 12/110 (10%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 229 MKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALC 288
M + + N+ ++ F F ++L D+ S+ D +++
Sbjct: 1 MYYLKNTNF----WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFS 56
Query: 289 YFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILA 338
+ +L+D R + + + + F + + ++
Sbjct: 57 LLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 29.3 bits (65), Expect = 7.9
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 640 STTKL-ECYNGFMKNATEWSKNS-------LSFMGNRALFLTGDRTNRKNIENGNLGGTS 691
ST L + F+ + W+K+S L G ++ D T N + + T+
Sbjct: 169 STDWLRTLMHEFVTKNSMWNKDSENVDYGGLQLQGGFLKYVNSDLTKYANSDWRLMNRTA 228
Query: 692 GNMTEVKNGN 701
N+ G
Sbjct: 229 TNIDGKNYGG 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.431
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,960,057
Number of extensions: 796192
Number of successful extensions: 1664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1645
Number of HSP's successfully gapped: 27
Length of query: 850
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 748
Effective length of database: 3,853,851
Effective search space: 2882680548
Effective search space used: 2882680548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.4 bits)