RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1432
         (850 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 37.1 bits (84), Expect = 0.008
 Identities = 18/200 (9%), Positives = 49/200 (24%), Gaps = 6/200 (3%)

Query: 280 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD 339
                        I  +   D F  ++       F         +     +  +      
Sbjct: 217 FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276

Query: 340 SFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399
            F              +L   ++ +  + +    +    ++           +       
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336

Query: 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPA 459
              QF   E RF    +   + F   +      +    + +S    G +  Y +  +V  
Sbjct: 337 ITSQF---EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVAL 390

Query: 460 VLMVLALVMFVVGKPMYTIR 479
              ++++       P+  +R
Sbjct: 391 GFTLISVFTLSGPGPLSLLR 410



 Score = 34.7 bits (78), Expect = 0.044
 Identities = 20/257 (7%), Positives = 57/257 (22%), Gaps = 1/257 (0%)

Query: 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAIL 298
            + ++     F   F          ++L D+   S+ D  +++            +  +L
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66

Query: 299 ADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLG 358
           +D   G  + +        V++  F+   +   +   IL  S  G       F+      
Sbjct: 67  SDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 359 NILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFS 418
              +   +  +            + +    +              +        L     
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 419 VYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTI 478
                      +                 E          ++ ++     + V    +  
Sbjct: 186 FAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN 245

Query: 479 RCPKKNIILQFLKCMFY 495
                    +    +F 
Sbjct: 246 FFTSFFATGEQGTRVFG 262


>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
           herpesvirus 4, MuHV-4 [TaxId: 33708]}
          Length = 371

 Score = 28.9 bits (64), Expect = 2.9
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 10  NFQILPWIRFVSWRTPSGEWYVVD--VSQDLLSYQQDITPFLRKPKLVLINTLPCVVSVV 67
           +      +   S R  + ++  VD   ++  +     +TPF   P+   +NT PC     
Sbjct: 199 SLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFGGPPQQAKMNTCPCYYKY- 257

Query: 68  NDITYLDEMESGDILTYAN 86
             ++ L  M+   +   A 
Sbjct: 258 -SVSPLPAMDHLILADLAG 275


>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 324

 Score = 28.5 bits (63), Expect = 3.2
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 580 SPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPE 639
             +  L      + C + + +         + +  G      AFI    V  +L +    
Sbjct: 164 PNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGA--GDVAFIKESTVFEDLSDEAER 221

Query: 640 STTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIEN 684
              +L C +   K   ++    L+ + + A+           I N
Sbjct: 222 DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWN 266


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 21/198 (10%), Positives = 50/198 (25%), Gaps = 13/198 (6%)

Query: 230 KEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKF--SEKDATVLYHIFYAL 287
                  Y +  + I    F    ++  +R   +L +  +++   S  D           
Sbjct: 12  AAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIA 71

Query: 288 CYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRT 347
             F   I   ++D        +      A  +      + +    I  +           
Sbjct: 72  YGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV--------- 121

Query: 348 IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGG-IKPCVAALCGEQFCV 406
           +      +       C   +        +  ++ +       GG I P +  L    F  
Sbjct: 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 181

Query: 407 PEQRFYLERFFSVYYFII 424
                Y+  F ++   + 
Sbjct: 182 WHAALYMPAFCAILVALF 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,188,734
Number of extensions: 154066
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 13
Length of query: 850
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 757
Effective length of database: 1,130,706
Effective search space: 855944442
Effective search space used: 855944442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.0 bits)