BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14320
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q+
Sbjct: 16 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 55
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q
Sbjct: 16 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 54
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q+
Sbjct: 16 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 55
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q
Sbjct: 16 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 54
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q+
Sbjct: 35 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 74
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q
Sbjct: 35 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its
Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products
Amp And Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its
Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products
Amp And Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its
Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products
Amp And Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its
Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products
Amp And Fumarate
Length = 503
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q+
Sbjct: 35 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 74
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q
Sbjct: 35 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 7 KYISPLSTRYA-SKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 46
K+ S LSTRY + + S+ K T WRQLWI+LAEA++
Sbjct: 6 KFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 211 KYISPLSTRYA-SKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
K+ S LSTRY + + S+ K T WRQLWI+LAEA++
Sbjct: 6 KFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46
>pdb|2ZYK|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|B Chain B, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|C Chain C, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|D Chain D, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYM|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Alpha-Cyclodextrin
pdb|2ZYN|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Beta-Cyclodextrin
pdb|2ZYO|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Maltotetraose
Length = 397
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 175 WVHDRLGNCVLLAFLGPTQAVNSTTSTSSNMDHEHCKY 212
W HDRLG V L P Q NS + ++ + Y
Sbjct: 80 WPHDRLGEAVTKGLLQPIQVDNSVKNQFDDVAMKALTY 117
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 161 ASKVKQRCGWLVFGWVHDRLGNCVLL 186
A+ Q CGW GW D LGN +L+
Sbjct: 116 AATTVQGCGWAALGW--DTLGNKLLI 139
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 136 YTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQAV 195
Y + E + D A+F + S+ C + GWVHD LG F+G A
Sbjct: 64 YNQGFEIVLNDYKWFAFFK--YEVKGSRAISYCHETMTGWVHDVLGR-NWACFVGKKMA- 119
Query: 196 NSTTSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLW 242
N + N+ H + L +Y+ + H+ + +K + ++ W
Sbjct: 120 NHSEKVYVNVAH-----LGGLQEKYSERLYSHHHNFVKAINSVQKSW 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,241,377
Number of Sequences: 62578
Number of extensions: 264160
Number of successful extensions: 528
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 14
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)