Query psy14320
Match_columns 253
No_of_seqs 271 out of 944
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 16:52:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0015 PurB Adenylosuccinate 99.7 1.5E-18 3.3E-23 166.7 -0.8 94 12-114 1-100 (438)
2 PRK07492 adenylosuccinate lyas 99.5 5E-16 1.1E-20 147.6 -2.2 93 12-114 1-99 (435)
3 PRK07380 adenylosuccinate lyas 99.5 8.1E-16 1.7E-20 146.1 -1.8 93 12-114 1-96 (431)
4 cd03302 Adenylsuccinate_lyase_ 99.4 1.5E-14 3.2E-19 137.3 -0.9 93 12-114 1-98 (436)
5 PRK08470 adenylosuccinate lyas 99.4 4.2E-14 9.1E-19 134.5 0.0 94 12-115 1-97 (442)
6 PLN02848 adenylosuccinate lyas 99.2 8.3E-13 1.8E-17 127.1 -2.6 102 7-114 10-128 (458)
7 PRK09053 3-carboxy-cis,cis-muc 99.2 4.4E-12 9.6E-17 120.6 -0.6 100 9-114 4-110 (452)
8 PRK09285 adenylosuccinate lyas 99.1 4.1E-12 8.8E-17 122.0 -1.5 102 7-114 7-125 (456)
9 PRK06390 adenylosuccinate lyas 99.1 4.4E-12 9.4E-17 120.8 -1.4 97 8-114 2-104 (451)
10 PRK08540 adenylosuccinate lyas 99.1 9.8E-12 2.1E-16 118.1 -0.9 97 9-114 3-105 (449)
11 PRK05975 3-carboxy-cis,cis-muc 99.0 2.3E-11 5E-16 113.1 -0.9 98 7-114 5-110 (351)
12 TIGR00928 purB adenylosuccinat 98.9 1E-10 2.2E-15 110.7 -1.1 93 12-114 1-99 (435)
13 cd01597 pCLME prokaryotic 3-ca 98.8 6.1E-10 1.3E-14 105.3 0.2 94 14-114 4-101 (437)
14 cd01598 PurB PurB_like adenylo 98.8 2.7E-10 5.8E-15 109.0 -3.2 88 21-114 1-103 (425)
15 cd01360 Adenylsuccinate_lyase_ 98.7 8.2E-10 1.8E-14 103.4 -2.3 91 15-115 1-94 (387)
16 TIGR02426 protocat_pcaB 3-carb 98.6 5.1E-09 1.1E-13 96.7 -0.7 92 13-114 3-101 (338)
17 cd01595 Adenylsuccinate_lyase_ 98.3 3.1E-08 6.7E-13 92.3 -3.2 84 21-114 1-91 (381)
18 KOG2700|consensus 97.8 4E-06 8.7E-11 82.3 -0.1 98 8-112 6-109 (481)
19 PF00206 Lyase_1: Lyase; Inte 97.6 3.8E-07 8.2E-12 82.8 -9.6 90 15-114 2-113 (312)
20 PRK02186 argininosuccinate lya 97.2 5.7E-05 1.2E-09 77.6 -1.5 91 17-114 417-518 (887)
21 PRK12308 bifunctional arginino 96.8 0.00033 7.3E-09 69.5 0.1 96 13-114 5-111 (614)
22 PRK06705 argininosuccinate lya 96.7 0.00025 5.3E-09 69.6 -1.1 85 24-114 31-118 (502)
23 PRK04833 argininosuccinate lya 96.6 0.00041 8.9E-09 67.0 -1.0 97 12-114 4-111 (455)
24 cd01334 Lyase_I Lyase class I 95.7 0.0015 3.2E-08 59.8 -1.9 75 31-114 1-82 (325)
25 cd01357 Aspartase Aspartase. T 95.5 0.0025 5.4E-08 61.7 -0.9 100 8-114 10-138 (450)
26 cd01359 Argininosuccinate_lyas 95.1 0.0024 5.1E-08 60.9 -2.7 77 27-114 5-89 (435)
27 TIGR00979 fumC_II fumarate hyd 94.3 0.0096 2.1E-07 58.0 -0.7 81 28-114 39-139 (458)
28 cd01362 Fumarase_classII Class 92.8 0.022 4.8E-07 55.4 -1.0 34 28-61 38-73 (455)
29 PRK00485 fumC fumarate hydrata 91.8 0.033 7.1E-07 54.2 -1.1 35 27-61 41-77 (464)
30 PRK13353 aspartate ammonia-lya 91.5 0.037 8.1E-07 54.1 -1.1 81 27-114 42-143 (473)
31 TIGR00839 aspA aspartate ammon 90.2 0.055 1.2E-06 53.1 -1.3 36 26-61 38-75 (468)
32 PRK12273 aspA aspartate ammoni 90.2 0.059 1.3E-06 52.7 -1.1 80 28-114 45-145 (472)
33 cd01596 Aspartase_like asparta 61.5 4.2 9.1E-05 39.9 1.3 35 27-61 37-73 (450)
34 PF01570 Flavi_propep: Flavivi 47.9 12 0.00025 30.1 1.6 27 88-115 51-81 (87)
35 PF13316 DUF4087: Protein of u 44.8 14 0.00029 30.5 1.6 31 161-191 2-37 (101)
36 PRK02186 argininosuccinate lya 35.1 32 0.00069 36.3 2.9 30 222-251 418-454 (887)
37 TIGR00838 argH argininosuccina 33.7 10 0.00022 36.9 -0.9 94 13-114 3-109 (455)
38 PF14606 Lipase_GDSL_3: GDSL-l 33.2 25 0.00055 31.0 1.6 64 102-168 1-80 (178)
39 KOG3733|consensus 29.3 19 0.00041 36.8 0.1 16 167-182 430-445 (566)
40 PF08773 CathepsinC_exc: Cathe 26.8 22 0.00047 29.8 0.1 21 162-182 88-108 (118)
No 1
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=99.70 E-value=1.5e-18 Score=166.67 Aligned_cols=94 Identities=27% Similarity=0.338 Sum_probs=81.2
Q ss_pred ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeeeccc-e
Q psy14320 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELERQDD-V 85 (253)
Q Consensus 12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~~~~-v 85 (253)
|+.||+++||+.|||+++|++.||+||+|+|+||++ |+ |.++.+.|.++. .+|++||.+ ||.+++|| +
T Consensus 1 ~~~RY~~~em~~ifS~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~e------ie~~t~HdV~ 74 (438)
T COG0015 1 LDGRYSSPEMRAIFSEEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKE------IEAETGHDVK 74 (438)
T ss_pred CCcccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCHHHHHH------HHHHhCCCcH
Confidence 578999999999999999999999999999999999 95 888888888774 466666655 99996555 9
Q ss_pred eecccccCCCCccCCCceeEEEecccccC
Q psy14320 86 GKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 86 aftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
||.|+++|.. -|++.+|||||...-|
T Consensus 75 a~v~~l~e~~---~~~~~~~VH~GaTS~D 100 (438)
T COG0015 75 ALVRALAEKV---GEEASEYVHFGATSQD 100 (438)
T ss_pred HHHHHHHHhc---CcccccceecccchHH
Confidence 9999999973 3389999999987655
No 2
>PRK07492 adenylosuccinate lyase; Provisional
Probab=99.53 E-value=5e-16 Score=147.63 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=80.7
Q ss_pred ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeeeccc-e
Q psy14320 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELERQDD-V 85 (253)
Q Consensus 12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~~~~-v 85 (253)
|++||++++|+.|||++++++.|++||+||++||++ |+ |+++.+.|.+++ .+|+++|.. +|..+.|| +
T Consensus 1 ~~~~y~~~~~~~i~s~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~~~~d~~~~~~------~~~~~~h~v~ 74 (435)
T PRK07492 1 MIPRYSRPEMVAIWEPETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVARIDE------IEAVTKHDVI 74 (435)
T ss_pred CCcccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcccCCCHHHHHH------HHHHhCCChH
Confidence 789999999999999999999999999999999999 95 988888887765 466666554 88886555 9
Q ss_pred eecccccCCCCccCCCceeEEEecccccC
Q psy14320 86 GKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 86 aftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
+|-+.+.+.. |+..+|||||..--|
T Consensus 75 a~~~~L~~~~----g~~~~~vH~G~Ts~D 99 (435)
T PRK07492 75 AFLTHLAEFV----GPDARFVHQGMTSSD 99 (435)
T ss_pred HHHHHHHHHh----hHhhhhhcCCCChhh
Confidence 9999999964 999999999988665
No 3
>PRK07380 adenylosuccinate lyase; Provisional
Probab=99.52 E-value=8.1e-16 Score=146.10 Aligned_cols=93 Identities=26% Similarity=0.343 Sum_probs=81.1
Q ss_pred ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeec
Q psy14320 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKK 88 (253)
Q Consensus 12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaft 88 (253)
|++||++++|+.|||+++++++|++||+|+++||++ |+ |.++.+.|++.++||+++|+. +|..+.|| ++|.
T Consensus 1 ~~~~y~~~~~~~~fs~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~d~~~i~~------~~~~~~h~v~a~v 74 (431)
T PRK07380 1 MIERYTLPEMGNIWTDTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAKANFDPQRILE------IEAEVRHDVIAFL 74 (431)
T ss_pred CccccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCCHHHHHH------HHHHhCCChHHHH
Confidence 456999999999999999999999999999999999 95 988888888777777766665 99996555 9999
Q ss_pred ccccCCCCccCCCceeEEEecccccC
Q psy14320 89 RSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 89 r~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
|++.|. +|+..+|||||..--|
T Consensus 75 ~~l~~~----~g~~~~~vH~G~Ts~D 96 (431)
T PRK07380 75 TNVNEY----VGDAGRYIHLGMTSSD 96 (431)
T ss_pred HHHHHH----HHHhhccccCCCChhh
Confidence 999996 3888999999998655
No 4
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=99.42 E-value=1.5e-14 Score=137.27 Aligned_cols=93 Identities=31% Similarity=0.463 Sum_probs=78.1
Q ss_pred ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC--CCccccCccccc-cccccceeeeccccceeeeeccc-ee
Q psy14320 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF--RNNIYIDPKHNF-TLEADRCTVVDSRLGVELERQDD-VG 86 (253)
Q Consensus 12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI--P~~ai~~Ik~~a-~fDieRI~~~~~~~~ie~e~~~~-va 86 (253)
+..||++++|+.|||++++++.|+++|+||++||++ |+ |.++.+.|++.+ .+|+++|.+ +|.++.|| ++
T Consensus 1 ~~~ry~~~~~~~~fs~~~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~d~~~i~~------~e~~~~hdv~a 74 (436)
T cd03302 1 LASRYASKEMVYIFSPRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEIAAA------EEKKLRHDVMA 74 (436)
T ss_pred CCCCcCCHHHHHHcChHHHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcCCHHHHHH------HHHHhCcCchH
Confidence 457999999999999999999999999999999999 96 666777777665 466666665 99996555 99
Q ss_pred ecccccCCCCccCCCceeEEEecccccC
Q psy14320 87 KKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 87 ftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
|.+.++|.. |+..+|||||..--|
T Consensus 75 ~~~~l~~~~----~~~~~~vH~G~TS~D 98 (436)
T cd03302 75 HVHAFGLLC----PAAAGIIHLGATSCF 98 (436)
T ss_pred HHHHHHHHh----HhccCeeeeCcCHHH
Confidence 999998864 888999999986433
No 5
>PRK08470 adenylosuccinate lyase; Provisional
Probab=99.39 E-value=4.2e-14 Score=134.53 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=79.9
Q ss_pred ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccceeec
Q psy14320 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDVGKK 88 (253)
Q Consensus 12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~vaft 88 (253)
|+.||++++|+.|||++++++.|++||+|+++|+++ |+ |.++.+.|.+...+|++++. ++|..+ ||+++|-
T Consensus 1 ~~~~y~~~~~~~i~s~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~~~------~~~~~~~~dv~~~v 74 (442)
T PRK08470 1 MVERYAREEMKKKWTMQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIARID------EIEKTTKHDLIAFL 74 (442)
T ss_pred CCcccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHHHH------HHHHccCCChHHHH
Confidence 567999999999999999999999999999999999 95 98888888877766776654 466665 5559999
Q ss_pred ccccCCCCccCCCceeEEEecccccCC
Q psy14320 89 RSRSEEPEDCRGEEKVEVVLGGAGVDG 115 (253)
Q Consensus 89 r~~se~~~~~~gee~~~v~~g~~~~~~ 115 (253)
+.+.|. +|+..+|||||-.--|-
T Consensus 75 ~~L~e~----~g~~~~~vH~G~TsnDi 97 (442)
T PRK08470 75 TSVSES----LGEESRFVHYGMTSSDC 97 (442)
T ss_pred HHHHHH----ccccccceecCCChhch
Confidence 999886 39899999999887663
No 6
>PLN02848 adenylosuccinate lyase
Probab=99.21 E-value=8.3e-13 Score=127.06 Aligned_cols=102 Identities=13% Similarity=0.009 Sum_probs=80.1
Q ss_pred cccccccCCCCC--HHHHhcCCchhHHHHHHHHHHHHHHHHHc-C-C---CC---ccccCccccc-cc---cccceeeec
Q psy14320 7 KYISPLSTRYAS--KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-G-F---RN---NIYIDPKHNF-TL---EADRCTVVD 72 (253)
Q Consensus 7 sY~sPMI~RYss--pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-G-I---P~---~ai~~Ik~~a-~f---DieRI~~~~ 72 (253)
+=++|+.+||++ ++|+.|||++++++.|++||+++++|+++ | | |. ++.+.|++.+ .| |++++
T Consensus 10 ~~~~pl~~ry~~~~~e~~~ifSd~a~~~~~l~vE~ala~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~---- 85 (458)
T PLN02848 10 TALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEV---- 85 (458)
T ss_pred ccCCCchhhhcCCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHhhHHHH----
Confidence 357999999999 99999999999999999999999999999 8 5 76 6777777654 35 44444
Q ss_pred cccceeeeeccc-eeecccccCCCCc--cCCCceeEEEecccccC
Q psy14320 73 SRLGVELERQDD-VGKKRSRSEEPED--CRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 73 ~~~~ie~e~~~~-vaftr~~se~~~~--~~gee~~~v~~g~~~~~ 114 (253)
.++|.+++|| +||-+.+.|...+ -+|+..+|||||..--|
T Consensus 86 --~~~e~~t~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqD 128 (458)
T PLN02848 86 --KKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSED 128 (458)
T ss_pred --HHHHHHhCCCcHHHHHHHHHHhccccchhhhhCcccCCCCHHH
Confidence 4588886555 9999999987521 01224689999987654
No 7
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.15 E-value=4.4e-12 Score=120.64 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=79.5
Q ss_pred cccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeeec
Q psy14320 9 ISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELERQ 82 (253)
Q Consensus 9 ~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~~ 82 (253)
.++|++ ||++++|+.|||++++++.|++||+|+|+|+++ |+ |+++.+.|.+.+ .||+++ +.+.+....
T Consensus 4 ~~~~~~~~~~~~~~~~i~s~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~------~~~~~~~~~ 77 (452)
T PRK09053 4 SARLTDLYFGSPAMRAIFSDRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDA------LAQAAALAG 77 (452)
T ss_pred CchhhhhhcCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCHHH------HHHHHhhcC
Confidence 467777 999999999999999999999999999999999 95 988888887765 255554 445777755
Q ss_pred cc-eeecccccCCCCccCCCceeEEEecccccC
Q psy14320 83 DD-VGKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 83 ~~-vaftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
|+ ++|.+++.+....--++-..|||+|-.--|
T Consensus 78 ~~~~~lv~~l~~~~~~~~~~~~~~vH~G~SsnD 110 (452)
T PRK09053 78 NLAIPLVKQLTAQVAARDAEAARYVHWGATSQD 110 (452)
T ss_pred CchHHHHHHHHHHhcccCcchhccccCCCChhh
Confidence 55 999888887642111356899999987665
No 8
>PRK09285 adenylosuccinate lyase; Provisional
Probab=99.14 E-value=4.1e-12 Score=122.02 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=79.0
Q ss_pred cccccccCCCCC--HHHHhcCCchhHHHHHHHHHHHHHHHHHc-C----CCCccccC---ccccc-cc---cccceeeec
Q psy14320 7 KYISPLSTRYAS--KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-G----FRNNIYID---PKHNF-TL---EADRCTVVD 72 (253)
Q Consensus 7 sY~sPMI~RYss--pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-G----IP~~ai~~---Ik~~a-~f---DieRI~~~~ 72 (253)
.-++|+..||++ ++|+.|||++++++.|++||+|+++|+++ | ||+.+.+. |++.. .| |+++|.
T Consensus 7 ~~~~p~~~ry~~~~~e~~~~~s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~~d~~~i~--- 83 (456)
T PRK09285 7 TALSPLDGRYASKTAALRPIFSEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDAARIK--- 83 (456)
T ss_pred cCCCCCccccCCCCHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCcccHHHHH---
Confidence 468999999999 99999999999999999999999999999 6 45554444 55543 35 555544
Q ss_pred cccceeeeeccc-eeecccccCCCCc--cCCCceeEEEecccccC
Q psy14320 73 SRLGVELERQDD-VGKKRSRSEEPED--CRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 73 ~~~~ie~e~~~~-vaftr~~se~~~~--~~gee~~~v~~g~~~~~ 114 (253)
++|..++|| ++|.+.+.|...+ -|++..+|||||..--|
T Consensus 84 ---~~e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~D 125 (456)
T PRK09285 84 ---EIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSED 125 (456)
T ss_pred ---HHHHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhh
Confidence 489886555 9999999987421 01256899999988655
No 9
>PRK06390 adenylosuccinate lyase; Provisional
Probab=99.14 E-value=4.4e-12 Score=120.83 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=79.5
Q ss_pred ccccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeee-
Q psy14320 8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELER- 81 (253)
Q Consensus 8 Y~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~- 81 (253)
.+||+..||++++|+.|||++++++.|++||+|+++++++ || |.++.+.|.+... +|++++. ++|.++
T Consensus 2 ~~~~~~~~y~~~~~~~i~s~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~~~------~~~~~~~ 75 (451)
T PRK06390 2 VVSPIEYRYGRDQVKYIFDDENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVR------EIESEIK 75 (451)
T ss_pred CCCCcCcccCCHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHH------HHHHHhC
Confidence 4799999999999999999999999999999999999999 96 8887777766542 4444433 367774
Q ss_pred ccceeecccccCCCCccCCCceeEEEecccccC
Q psy14320 82 QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 82 ~~~vaftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
||.++|-+.+.+.. |+-.+|+|+|-.--|
T Consensus 76 ~dv~~~~~~L~~~~----g~~~~~iH~G~SsnD 104 (451)
T PRK06390 76 HDVMALVEALSEQC----SAGKNYVHFGVTSND 104 (451)
T ss_pred CCcHHHHHHHHHHh----hhhhhheecCccHhh
Confidence 55599999998863 877899999987665
No 10
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=99.10 E-value=9.8e-12 Score=118.07 Aligned_cols=97 Identities=23% Similarity=0.324 Sum_probs=76.0
Q ss_pred cccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeecc
Q psy14320 9 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQD 83 (253)
Q Consensus 9 ~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~ 83 (253)
++|+.+||++++|+.|||+++++++|++||+|++.++++ |+ |.++.+.|.+... +|++++ -+++.+..|
T Consensus 3 ~~~~~~~~~~~~~~~~~s~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~------~~~~~~~~~ 76 (449)
T PRK08540 3 IHPIDYRYGTPEMKRVWSEENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERV------KEIEAEIHH 76 (449)
T ss_pred cCCcCcccCCHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHH------HHHHHHhCC
Confidence 689999999999999999999999999999999999999 95 8887777765542 333333 345556555
Q ss_pred c-eeecccccCCCCccCCCceeEEEecccccC
Q psy14320 84 D-VGKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 84 ~-vaftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
| +++=+.+.+.. -|+-.+|||+|-.--|
T Consensus 77 ~v~~~e~~L~~~~---~~~~~~~vH~g~S~nD 105 (449)
T PRK08540 77 DIMAVVKALSEVC---EGDAGEYVHFGATSND 105 (449)
T ss_pred CcHHHHHHHHHHh---hhhhhcceecCccHhh
Confidence 5 88888887753 1466899999987555
No 11
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.04 E-value=2.3e-11 Score=113.06 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=75.3
Q ss_pred cccccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeee
Q psy14320 7 KYISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELE 80 (253)
Q Consensus 7 sY~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e 80 (253)
.|.++|+. ||++++|+.|||++++++.|++||+|+++|+++ |+ |+++.+.|.+... +|+.+ .-+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~s~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~d~~~------~~~~~~~ 78 (351)
T PRK05975 5 VFDHPFLSGLFGDDEIAALFSAEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFEPDLAA------LRHATAR 78 (351)
T ss_pred ccccchhhccCCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHH------HhhHHHh
Confidence 36688887 999999999999999999999999999999999 95 8887777766542 33322 2234445
Q ss_pred eccc-eeecccccCCCCccCC-CceeEEEecccccC
Q psy14320 81 RQDD-VGKKRSRSEEPEDCRG-EEKVEVVLGGAGVD 114 (253)
Q Consensus 81 ~~~~-vaftr~~se~~~~~~g-ee~~~v~~g~~~~~ 114 (253)
..|+ ++|-+.+.+. +| +...|||||-.--|
T Consensus 79 ~g~~v~~~v~~l~~~----~g~~~~~~vH~G~TsnD 110 (351)
T PRK05975 79 DGVVVPALVRQLRAA----VGEEAAAHVHFGATSQD 110 (351)
T ss_pred cCCcHHHHHHHHHHH----hCchhhCcccCCCChhh
Confidence 4344 7898888875 35 45789999987655
No 12
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=98.94 E-value=1e-10 Score=110.69 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=74.0
Q ss_pred ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeeccc-e
Q psy14320 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQDD-V 85 (253)
Q Consensus 12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~~-v 85 (253)
+.+||++++|+.|||++++++.|+++|+|++.++++ |+ |.++.+.|.+... +|++++ -+.+....|| +
T Consensus 1 ~~~~y~~~~~~~ifs~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~~~~~~d~~~l------~~~~~~~~~~v~ 74 (435)
T TIGR00928 1 LDERYGTPEMRAIWSEENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKANFTDVDLARI------KEIEAVTRHDVK 74 (435)
T ss_pred CCcccCcHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCCCCccCHHHH------HHHHHHHCcChH
Confidence 357999999999999999999999999999999999 95 8888777776532 334443 3455555444 8
Q ss_pred eecccccCCCCccCCCceeEEEecccccC
Q psy14320 86 GKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 86 aftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
+|=+.+.+.. |+..+|||+|-.--|
T Consensus 75 ~~e~~l~~~~----g~~~~~vh~g~SsnD 99 (435)
T TIGR00928 75 AVVYALKEKC----GAEGEFIHFGATSND 99 (435)
T ss_pred HHHHHHHHHh----hhhhhheeecccHHH
Confidence 9989888864 777899999987555
No 13
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=98.83 E-value=6.1e-10 Score=105.31 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred CCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeeccc
Q psy14320 14 TRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKRS 90 (253)
Q Consensus 14 ~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr~ 90 (253)
+||++++|+.|||++++++.|+.||+|.+.++++ |+ |.++.+.|.+.... + ++. .+...+.+.+..|+ +++-+.
T Consensus 4 ~~y~~~~~~~~~s~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~-~-~~~-~~~~~~~~~~~~~~v~a~e~~ 80 (437)
T cd01597 4 DLFGTPAMREIFSDENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADV-E-RLD-LEALAEATARTGHPAIPLVKQ 80 (437)
T ss_pred cccCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccc-c-CCC-HHHHHHHHHHhCCCcHHHHHH
Confidence 4999999999999999999999999999999999 95 88877777654321 1 111 24455577776666 799999
Q ss_pred ccCCCCccCCCc-eeEEEecccccC
Q psy14320 91 RSEEPEDCRGEE-KVEVVLGGAGVD 114 (253)
Q Consensus 91 ~se~~~~~~gee-~~~v~~g~~~~~ 114 (253)
+.|.. |++ .+|||+|-.--|
T Consensus 81 l~e~~----g~~~g~~lH~grSrnD 101 (437)
T cd01597 81 LTAAC----GDAAGEYVHWGATTQD 101 (437)
T ss_pred HHHHc----CccccCeeecCccHhH
Confidence 98864 765 799999986544
No 14
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=98.80 E-value=2.7e-10 Score=108.99 Aligned_cols=88 Identities=14% Similarity=0.000 Sum_probs=68.5
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHc-C-CCC------ccccCccccc---c-ccccceeeeccccceeeeeccc-eee
Q psy14320 21 MQHNFSDMKKFTTWRQLWIYLAEAQQS-G-FRN------NIYIDPKHNF---T-LEADRCTVVDSRLGVELERQDD-VGK 87 (253)
Q Consensus 21 Mr~IWSeEnKfqtWLkVE~ALAeAqaE-G-IP~------~ai~~Ik~~a---~-fDieRI~~~~~~~~ie~e~~~~-vaf 87 (253)
|+.|||+++++++|++||+|+++||++ | ||. ++.+.|++.. . +|+++|.. +|..+.|| ++|
T Consensus 1 ~~~~~s~~~~~~~~l~vE~ala~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~------~~~~~~hdv~al 74 (425)
T cd01598 1 LRPYFSEYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKE------IEATTNHDVKAV 74 (425)
T ss_pred CHHHhCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHH------HHHHHCCCcHHH
Confidence 478999999999999999999999999 9 488 7777776655 2 56655555 88886555 999
Q ss_pred cccccCCCCcc--CCCceeEEEecccccC
Q psy14320 88 KRSRSEEPEDC--RGEEKVEVVLGGAGVD 114 (253)
Q Consensus 88 tr~~se~~~~~--~gee~~~v~~g~~~~~ 114 (253)
-+.+.|...+. +|+...|||||..--|
T Consensus 75 ~~~l~~~~g~~~~~~~~~~~vH~G~TsnD 103 (425)
T cd01598 75 EYFLKEKFETLGLLKKIKEFIHFACTSED 103 (425)
T ss_pred HHHHHHHhcccccchhhhhHhccCCChhh
Confidence 99999864321 1256789999988665
No 15
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=98.73 E-value=8.2e-10 Score=103.44 Aligned_cols=91 Identities=22% Similarity=0.325 Sum_probs=73.6
Q ss_pred CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeecccc
Q psy14320 15 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKRSR 91 (253)
Q Consensus 15 RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr~~ 91 (253)
||++++|+.|||++++++.|++||+|++.++++ |+ |.++.+.|.+...+|.+++. +++....|| +++=+.+
T Consensus 1 ~~~~~~~~~~fs~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~------~~~~~~~~dv~~~e~~L 74 (387)
T cd01360 1 RYGRPEMKKIWSEENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVK------EIEAETKHDVIAFVTAI 74 (387)
T ss_pred CCCchHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHH------HHHHHhCCChHHHHHHH
Confidence 799999999999999999999999999999999 95 88888888777665555443 245555444 8887777
Q ss_pred cCCCCccCCCceeEEEecccccCC
Q psy14320 92 SEEPEDCRGEEKVEVVLGGAGVDG 115 (253)
Q Consensus 92 se~~~~~~gee~~~v~~g~~~~~~ 115 (253)
.+. +|+..+|||+|-.--|-
T Consensus 75 ~~~----~g~~~~~lH~G~S~nDi 94 (387)
T cd01360 75 AEY----CGEAGRYIHFGLTSSDV 94 (387)
T ss_pred HHH----HHHhhhheeCCCChhhh
Confidence 775 38889999999886653
No 16
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.62 E-value=5.1e-09 Score=96.73 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=68.3
Q ss_pred cCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeeccc-ee
Q psy14320 13 STRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQDD-VG 86 (253)
Q Consensus 13 I~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~~-va 86 (253)
..||++++|+.|||++++++.|++||+|+++++++ |+ |+++.+.|.+... +|+.++. +.+.+..|. ++
T Consensus 3 ~~~~~~~~~~~i~sd~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~~d~~~~~------~~~~~~~~~~~~ 76 (338)
T TIGR02426 3 DGLFGDPAALELFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAAPDLEALA------HAAATAGNPVIP 76 (338)
T ss_pred ccccCCHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHHHHH------hHHHhcCCcHHH
Confidence 45999999999999999999999999999999999 95 8887777765442 2222221 233333344 67
Q ss_pred ecccccCCCCccCCCc-eeEEEecccccC
Q psy14320 87 KKRSRSEEPEDCRGEE-KVEVVLGGAGVD 114 (253)
Q Consensus 87 ftr~~se~~~~~~gee-~~~v~~g~~~~~ 114 (253)
+-+.+.|. +|+| ..|||+|-.--|
T Consensus 77 ~~~~l~~~----~g~~~g~~vH~G~S~nD 101 (338)
T TIGR02426 77 LVKALRKA----VAGEAARYVHRGATSQD 101 (338)
T ss_pred HHHHHHHH----hCccccCcccCCCChhh
Confidence 78888875 3654 679999987655
No 17
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=98.34 E-value=3.1e-08 Score=92.33 Aligned_cols=84 Identities=26% Similarity=0.322 Sum_probs=66.3
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeee-ccceeecccccCC
Q psy14320 21 MQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELER-QDDVGKKRSRSEE 94 (253)
Q Consensus 21 Mr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~-~~~vaftr~~se~ 94 (253)
|+.|||++++++.|++||+|++.++++ |+ |+++.++|.+... +|++ +..+++..+ ||.+++=+.+.|.
T Consensus 1 ~~~~~s~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~------~~~~~~~~~~~~v~~~e~~L~~~ 74 (381)
T cd01595 1 MRAIFSEENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAE------RIAEIEKETGHDVIAFVYALAEK 74 (381)
T ss_pred ChhHhChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHH------HHHHHHHHhCcCcHHHHHHHHHH
Confidence 688999999999999999999999999 96 8887777765543 2333 334567554 4449999999986
Q ss_pred CCccCCC-ceeEEEecccccC
Q psy14320 95 PEDCRGE-EKVEVVLGGAGVD 114 (253)
Q Consensus 95 ~~~~~ge-e~~~v~~g~~~~~ 114 (253)
. |+ -.+|||+|-.--|
T Consensus 75 ~----g~~~~~~vH~g~S~nD 91 (381)
T cd01595 75 C----GEDAGEYVHFGATSQD 91 (381)
T ss_pred h----hhHhhhHeecCcCHHH
Confidence 4 87 6999999987655
No 18
>KOG2700|consensus
Probab=97.81 E-value=4e-06 Score=82.29 Aligned_cols=98 Identities=37% Similarity=0.535 Sum_probs=73.7
Q ss_pred ccccccCCCCC-HHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC---CCccccCccccccccccceeeeccccceeee-e
Q psy14320 8 YISPLSTRYAS-KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF---RNNIYIDPKHNFTLEADRCTVVDSRLGVELE-R 81 (253)
Q Consensus 8 Y~sPMI~RYss-pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI---P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e-~ 81 (253)
|.+|+..||.+ ++|..|||+.+++.+|+++|..|++|.++ |+ |+.+++.++...+++....+. .-+.|.- +
T Consensus 6 ~~~pls~ry~~~~~l~~~~s~~~~~~twr~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d~~~---l~~ee~r~~ 82 (481)
T KOG2700|consen 6 YKSPLSGRYASISELNPIFSDRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTA---LSPEEGRYR 82 (481)
T ss_pred CCCcccceeccccccchhhhhhhhhhhhhHHHHhhhhhhhcCCcccchHHHHHHHHhhccccccchhh---cChhhhhhc
Confidence 99999999998 99999999999999999999999999999 86 566788877754443333222 1112222 5
Q ss_pred ccceeecccccCCCCccCCCceeEEEecccc
Q psy14320 82 QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAG 112 (253)
Q Consensus 82 ~~~vaftr~~se~~~~~~gee~~~v~~g~~~ 112 (253)
||+.|---+.+|. |.+-=+ -.|+|-.-
T Consensus 83 hdVmahvh~~~~~---cp~aag-iihlgats 109 (481)
T KOG2700|consen 83 HDVMAHVHSFGEL---CPIAAG-IIHLGATS 109 (481)
T ss_pred ccHHHHHHHHHhh---cchhcc-eEEeeeee
Confidence 7777887888886 666666 67777654
No 19
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=97.63 E-value=3.8e-07 Score=82.76 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=58.1
Q ss_pred CCC--CHHHHhcCCchhHHHHHHH-----HHHHHHHHHHc-CC-CCccccCcccccc-----ccccceeeecccccee--
Q psy14320 15 RYA--SKEMQHNFSDMKKFTTWRQ-----LWIYLAEAQQS-GF-RNNIYIDPKHNFT-----LEADRCTVVDSRLGVE-- 78 (253)
Q Consensus 15 RYs--spEMr~IWSeEnKfqtWLk-----VE~ALAeAqaE-GI-P~~ai~~Ik~~a~-----fDieRI~~~~~~~~ie-- 78 (253)
||. +++|..+||+.++++.|+. +|+++++|+++ |+ |+++.+.|.+... ++.+ ....|+
T Consensus 2 r~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~------~~~~~~~~ 75 (312)
T PF00206_consen 2 RYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLD------DAFELDEI 75 (312)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTH------GHHHHCSC
T ss_pred CcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccc------cccchhhh
Confidence 555 8999999999999999999 99999999999 96 7665555543332 2222 112232
Q ss_pred -eeeccc-ee-ecccccCCCCccCC---CceeEEEecccccC
Q psy14320 79 -LERQDD-VG-KKRSRSEEPEDCRG---EEKVEVVLGGAGVD 114 (253)
Q Consensus 79 -~e~~~~-va-ftr~~se~~~~~~g---ee~~~v~~g~~~~~ 114 (253)
...|++ .+ ..+.++| .+| +..+|||||-.--|
T Consensus 76 ~~~~~~~~~~~l~~~~~e----~~~~~~~~~~~vH~G~Ts~D 113 (312)
T PF00206_consen 76 EEDIGHAVEANLNEVLGE----LLGEPPEAGGWVHYGRTSND 113 (312)
T ss_dssp SSSHHHHHHHHHHHHHHH----HHTHSSGGGGGTTTT--HHH
T ss_pred hccchhHHHHHHHHHhhh----hhhccccccccccCCCcHHH
Confidence 223444 33 3444443 234 78899999976544
No 20
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.17 E-value=5.7e-05 Score=77.62 Aligned_cols=91 Identities=8% Similarity=-0.119 Sum_probs=65.2
Q ss_pred CCHHHHhcCC-------chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-ee
Q psy14320 17 ASKEMQHNFS-------DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VG 86 (253)
Q Consensus 17 sspEMr~IWS-------eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-va 86 (253)
.+|+|++||+ ++++++.|+++|+|.+.++++ || |.++.+.|.+... .+..... . .+...-+.-|+ ++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~-~~~~~~~-~-~~~~~~~~~~~~~~ 493 (887)
T PRK02186 417 LPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHR-RLRDAGF-A-PLLARPAPRGLYML 493 (887)
T ss_pred CChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHhHH-h-hCcCCCCCcchHHH
Confidence 4889999999 999999999999999999999 96 8887777766541 1111101 1 11111222234 88
Q ss_pred ecccccCCCCccCC-CceeEEEecccccC
Q psy14320 87 KKRSRSEEPEDCRG-EEKVEVVLGGAGVD 114 (253)
Q Consensus 87 ftr~~se~~~~~~g-ee~~~v~~g~~~~~ 114 (253)
+-+.+.|.. | +..+|+|+|-.--|
T Consensus 494 ~e~~L~~~~----g~~~~~~lH~grSrnD 518 (887)
T PRK02186 494 YEAYLIERL----GEDVGGVLQTARSRND 518 (887)
T ss_pred HHHHHHHHh----ChhhhcccCccccHHH
Confidence 999998863 8 56899999987544
No 21
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=96.79 E-value=0.00033 Score=69.49 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=65.8
Q ss_pred cCCCCC--HHHHhcCCchhHHHHHHHHH-----HHHHHHHHc-CC-CCccccCccccccccccceee-eccccceeeeec
Q psy14320 13 STRYAS--KEMQHNFSDMKKFTTWRQLW-----IYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTV-VDSRLGVELERQ 82 (253)
Q Consensus 13 I~RYss--pEMr~IWSeEnKfqtWLkVE-----~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~-~~~~~~ie~e~~ 82 (253)
..||+. .+--.+||+..+++.|+.+| +|++.++++ || |+++.+.|.+...--..+... .....+.|.|..
T Consensus 5 ~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~ed~ 84 (614)
T PRK12308 5 GGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDAEDI 84 (614)
T ss_pred ccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccH
Confidence 357754 22334899999999999999 999999999 96 888877776554210001001 123344677754
Q ss_pred cc-eeecccccCCCCccCCCceeEEEecccccC
Q psy14320 83 DD-VGKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 83 ~~-vaftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
|. |. +.+.|. +|+-.+|||+|-.--|
T Consensus 85 h~~ie--~~L~~~----~g~~~~~iH~g~S~nD 111 (614)
T PRK12308 85 HSWVE--QQLIGK----VGDLGKKLHTGRSRND 111 (614)
T ss_pred HHHHH--HHHHHH----hcccccceecCCChhh
Confidence 44 77 777775 3877999999987655
No 22
>PRK06705 argininosuccinate lyase; Provisional
Probab=96.75 E-value=0.00025 Score=69.58 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=59.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccceeecccccCCCCccCC-
Q psy14320 24 NFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDDVGKKRSRSEEPEDCRG- 100 (253)
Q Consensus 24 IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~vaftr~~se~~~~~~g- 100 (253)
-+.++++++.|+++|+|.+.++++ || |.++.+.|.+... .+..+.. ..+.+..+.||.+.+-.+..+. +.|
T Consensus 31 ~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~-~~~~~~~--~~l~~~~~~edv~~~ie~~l~~---~~G~ 104 (502)
T PRK06705 31 NFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALK-KVEEIPE--EQLLYTEQHEDLFFLVEHLISQ---EAKS 104 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-Hhhhccc--CccccCCCCCchHHHHHHHHHH---hcCc
Confidence 456789999999999999999999 96 8888777765542 1111111 1222233356668888888775 567
Q ss_pred CceeEEEecccccC
Q psy14320 101 EEKVEVVLGGAGVD 114 (253)
Q Consensus 101 ee~~~v~~g~~~~~ 114 (253)
+..+|+|+|-.--|
T Consensus 105 ~~g~~lH~GrSrnD 118 (502)
T PRK06705 105 DFVSNMHIGRSRND 118 (502)
T ss_pred hhhccccCCCCHhh
Confidence 57999999987655
No 23
>PRK04833 argininosuccinate lyase; Provisional
Probab=96.56 E-value=0.00041 Score=67.03 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=63.8
Q ss_pred ccCCCCCH--HHHhcCCchhHHHHHHH---HH--HHHHHHHHc-CC-CCccccCcccccc-ccccceeeeccccceeeee
Q psy14320 12 LSTRYASK--EMQHNFSDMKKFTTWRQ---LW--IYLAEAQQS-GF-RNNIYIDPKHNFT-LEADRCTVVDSRLGVELER 81 (253)
Q Consensus 12 MI~RYssp--EMr~IWSeEnKfqtWLk---VE--~ALAeAqaE-GI-P~~ai~~Ik~~a~-fDieRI~~~~~~~~ie~e~ 81 (253)
+..||+.+ ++..+|++..+++.|+. || +|.+.++++ |+ |.++.+.|.+... +. +.... |-..-++.+.
T Consensus 4 ~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~-~~~~~-~~~~~~~~~~ 81 (455)
T PRK04833 4 WGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELL-EEVRA-NPQQILASDA 81 (455)
T ss_pred cccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-hhhhc-CCcccCCCCC
Confidence 34599988 89999999999999999 99 999999999 96 8887777654432 10 01000 0011122222
Q ss_pred ccceeecc-cccCCCCccCCCceeEEEecccccC
Q psy14320 82 QDDVGKKR-SRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 82 ~~~vaftr-~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
.|...+-. .+.|. +|+-.+|+|+|-.--|
T Consensus 82 edv~~~ie~~L~~~----~g~~g~~lH~grSrnD 111 (455)
T PRK04833 82 EDIHSWVEGKLIDK----VGDLGKKLHTGRSRND 111 (455)
T ss_pred chHHHHHHHHHHHH----hccccCcccCCCCchh
Confidence 23444444 45554 4876889999987655
No 24
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=95.67 E-value=0.0015 Score=59.76 Aligned_cols=75 Identities=16% Similarity=0.002 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeeccc-eeecccccCCCCccCCCc-e
Q psy14320 31 FTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQDD-VGKKRSRSEEPEDCRGEE-K 103 (253)
Q Consensus 31 fqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~~-vaftr~~se~~~~~~gee-~ 103 (253)
++.|+.+|+|++.++++ |+ |+++.+.|.+... .|.++.. .+++.+..|+ .+|-+.+.|. +|++ .
T Consensus 1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~e~~l~~~----~g~~~~ 71 (325)
T cd01334 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQ-----VEQEGSGTHDVMAVEEVLAER----AGELNG 71 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccC-----eeeCCCCccHHHHHHHHHHHH----hccccC
Confidence 46799999999999999 96 8887777765543 2333221 3466666666 9999999997 4998 9
Q ss_pred eEEEecccccC
Q psy14320 104 VEVVLGGAGVD 114 (253)
Q Consensus 104 ~~v~~g~~~~~ 114 (253)
.|||+|-.--|
T Consensus 72 ~~lH~G~S~nD 82 (325)
T cd01334 72 GYVHTGRSSND 82 (325)
T ss_pred CCCccCCCCcc
Confidence 99999987665
No 25
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=95.55 E-value=0.0025 Score=61.69 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=63.8
Q ss_pred ccccccCCCCCHHHH--hcC------CchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-c---cc-cceeeec
Q psy14320 8 YISPLSTRYASKEMQ--HNF------SDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-L---EA-DRCTVVD 72 (253)
Q Consensus 8 Y~sPMI~RYsspEMr--~IW------SeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-f---Di-eRI~~~~ 72 (253)
..-|-.--|+-.-++ ..| .++++++.|+++|+|+++++++ |+ |.++.+.|.+... + .+ +.+.+ +
T Consensus 10 ~~~~~~~~~g~~t~~~~~~~~~~~~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~d~~~~-~ 88 (450)
T cd01357 10 REVPADAYYGIQTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVV-D 88 (450)
T ss_pred cCCcccccchHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCcc-c
Confidence 344544556655566 334 3679999999999999999999 95 8887777766542 1 12 22222 4
Q ss_pred cccceeeee----ccc-eeecccccCCCCccCCCc-eeE--------EEecccccC
Q psy14320 73 SRLGVELER----QDD-VGKKRSRSEEPEDCRGEE-KVE--------VVLGGAGVD 114 (253)
Q Consensus 73 ~~~~ie~e~----~~~-vaftr~~se~~~~~~gee-~~~--------v~~g~~~~~ 114 (253)
...+.+.+. .|+ |++- . +|. +|++ .+| ||+|-.--|
T Consensus 89 ~~~~~~~~~~~~~~~~vi~~~-~-~e~----~g~~~g~~~~~h~~~~vH~GrSrnD 138 (450)
T cd01357 89 VIQGGAGTSTNMNANEVIANR-A-LEL----LGHEKGEYQYVHPNDHVNMSQSTND 138 (450)
T ss_pred hhhccccchhhhhHhHHHHHH-H-HHH----hCccccCCcccCCcccccCCCChHh
Confidence 444455554 444 6665 3 664 3744 778 889976544
No 26
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=95.10 E-value=0.0024 Score=60.88 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc-----cccccceeeeccccceeeeeccc-eeecccccCCCCcc
Q psy14320 27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF-----TLEADRCTVVDSRLGVELERQDD-VGKKRSRSEEPEDC 98 (253)
Q Consensus 27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a-----~fDieRI~~~~~~~~ie~e~~~~-vaftr~~se~~~~~ 98 (253)
+++.++.|+.||+|++.++++ |+ |.++.+.|.+.. .++.+++.+ ..+..|. .++-+.+.|.+
T Consensus 5 d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~-------~~~~~~~~~~~e~~l~~~~--- 74 (435)
T cd01359 5 DRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFEL-------DPEDEDIHMAIERRLIERI--- 74 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccC-------CCCCCcHHHHHHHHHHHHH---
Confidence 578899999999999999999 96 888777776554 234445444 2255566 88888887753
Q ss_pred CCCceeEEEecccccC
Q psy14320 99 RGEEKVEVVLGGAGVD 114 (253)
Q Consensus 99 ~gee~~~v~~g~~~~~ 114 (253)
|+..+|||+|-.--|
T Consensus 75 -g~~~~~iH~G~SsnD 89 (435)
T cd01359 75 -GDVGGKLHTGRSRND 89 (435)
T ss_pred -HHHHhhhhccCCHHh
Confidence 777889999987655
No 27
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=94.31 E-value=0.0096 Score=58.02 Aligned_cols=81 Identities=11% Similarity=-0.028 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-cccccee--eeccccceeeee------ccceeecccccCCCC
Q psy14320 28 MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-LEADRCT--VVDSRLGVELER------QDDVGKKRSRSEEPE 96 (253)
Q Consensus 28 EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-fDieRI~--~~~~~~~ie~e~------~~~vaftr~~se~~~ 96 (253)
..-++.|++||+|++.|+++ |+ |+++.+.|.+... +.-.... .+.+..+.+..+ |+.|+| .+.|.
T Consensus 39 ~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~--~l~e~-- 114 (458)
T TIGR00979 39 LELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIAN--RAIEL-- 114 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCceecccccccccccccHHHHHHH--HHHHH--
Confidence 35688999999999999999 96 8887777765542 1000110 011222234333 666988 56664
Q ss_pred ccCCCc---eeEEE------ecccccC
Q psy14320 97 DCRGEE---KVEVV------LGGAGVD 114 (253)
Q Consensus 97 ~~~gee---~~~v~------~g~~~~~ 114 (253)
+|+| ++||| ||-.--|
T Consensus 115 --~g~~~g~~~~vH~~d~vn~G~S~nD 139 (458)
T TIGR00979 115 --LGGKLGSKQPVHPNDHVNKSQSSND 139 (458)
T ss_pred --cCcccCCCceeCCCCCCCCCCCccc
Confidence 4654 68999 8987655
No 28
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=92.77 E-value=0.022 Score=55.38 Aligned_cols=34 Identities=12% Similarity=-0.059 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320 28 MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF 61 (253)
Q Consensus 28 EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a 61 (253)
..+++.|++||+|++.++++ |+ |.++.+.|.+..
T Consensus 38 ~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al 73 (455)
T cd01362 38 RELIRALGLLKKAAAQANAELGLLDEEKADAIVQAA 73 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 57899999999999999999 96 888777775543
No 29
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=91.82 E-value=0.033 Score=54.21 Aligned_cols=35 Identities=9% Similarity=-0.125 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320 27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF 61 (253)
Q Consensus 27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a 61 (253)
+.++++.|++||+|++.++++ |+ |+++.+.|.+..
T Consensus 41 ~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al 77 (464)
T PRK00485 41 PRELIRALALLKKAAARVNAELGLLDAEKADAIVAAA 77 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 478999999999999999999 96 888777776544
No 30
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=91.55 E-value=0.037 Score=54.11 Aligned_cols=81 Identities=17% Similarity=0.112 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-c---cc-cceeeeccccceeeee----ccc-eeecccccCC
Q psy14320 27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-L---EA-DRCTVVDSRLGVELER----QDD-VGKKRSRSEE 94 (253)
Q Consensus 27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-f---Di-eRI~~~~~~~~ie~e~----~~~-vaftr~~se~ 94 (253)
+.++++.|++||+|++.++++ |+ |.++.+.|.+... + .+ +.+. ++...+.+.+. .|+ |+ +.+.|.
T Consensus 42 ~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al~~i~~~~~~d~f~-~~~~~~~~~~~~~~n~~~vi~--~~l~e~ 118 (473)
T PRK13353 42 HPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDEILAGKLHDQFI-VDPIQGGAGTSTNMNANEVIA--NRALEL 118 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCC-cchhhccccchhcchhhHHHH--HHHHHH
Confidence 368999999999999999999 95 8887777765442 1 11 1111 13333333343 333 66 666665
Q ss_pred CCccCCCc-eeE--------EEecccccC
Q psy14320 95 PEDCRGEE-KVE--------VVLGGAGVD 114 (253)
Q Consensus 95 ~~~~~gee-~~~--------v~~g~~~~~ 114 (253)
+|++ -+| ||+|-.--|
T Consensus 119 ----~g~~~g~~~~~hp~d~vH~GrSrnD 143 (473)
T PRK13353 119 ----LGGEKGDYHYVSPNDHVNMAQSTND 143 (473)
T ss_pred ----hCccccCCccCCcccCccCCCChhh
Confidence 4655 454 999987655
No 31
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=90.18 E-value=0.055 Score=53.08 Aligned_cols=36 Identities=11% Similarity=-0.164 Sum_probs=30.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320 26 SDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF 61 (253)
Q Consensus 26 SeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a 61 (253)
..+++++.|++||+|++.++++ |+ |.++.+.|.+..
T Consensus 38 ~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al 75 (468)
T TIGR00839 38 DIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAAC 75 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999 95 888777776554
No 32
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=90.16 E-value=0.059 Score=52.73 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-c---cc-cceeeeccccceeeee-----ccceeecccccCCC
Q psy14320 28 MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-L---EA-DRCTVVDSRLGVELER-----QDDVGKKRSRSEEP 95 (253)
Q Consensus 28 EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-f---Di-eRI~~~~~~~~ie~e~-----~~~vaftr~~se~~ 95 (253)
+++++.|+++|+|++.++++ |+ |.++.+.|.+... + .. +.+. ++...+.+.+. |+.++|- .. |.
T Consensus 45 ~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~-~~~~~~~~~e~~~~~v~~~i~~~-~~-e~- 120 (472)
T PRK12273 45 PELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFV-VDVIQGGAGTSTNMNANEVIANR-AL-EL- 120 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCcc-cchhhccccchhhhHHHHHHHHH-HH-HH-
Confidence 78999999999999999999 95 8887666655432 1 00 1121 23444556664 3336776 44 43
Q ss_pred CccCCC-ceeE--EE------ecccccC
Q psy14320 96 EDCRGE-EKVE--VV------LGGAGVD 114 (253)
Q Consensus 96 ~~~~ge-e~~~--v~------~g~~~~~ 114 (253)
+|+ -..| || +|-.--|
T Consensus 121 ---~g~~~~~~~~vHp~d~v~~GrSrnD 145 (472)
T PRK12273 121 ---LGHEKGEYQYVHPNDHVNMSQSTND 145 (472)
T ss_pred ---hCcccCCcceeCCCCCCCCCCCchH
Confidence 263 3556 99 9877655
No 33
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=61.50 E-value=4.2 Score=39.91 Aligned_cols=35 Identities=9% Similarity=-0.116 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320 27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF 61 (253)
Q Consensus 27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a 61 (253)
.++.++.|++||+|++.++++ |+ |.++.+.|.+..
T Consensus 37 ~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l 73 (450)
T cd01596 37 PPELIRALALVKKAAALANAELGLLDEEKADAIVQAC 73 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 478999999999999999999 96 888777665543
No 34
>PF01570 Flavi_propep: Flavivirus polyprotein propeptide; InterPro: IPR002535 The Flaviviruses are small enveloped animal viruses containing a single positive strand genomic RNA []. The genome encodes one large ORF, a polyprotein which undergos proteolytic processing into mature viral peptide chains. This entry consists of a propeptide region of approximately 90 amino acids in length.; PDB: 3C6E_C 3C5X_C.
Probab=47.93 E-value=12 Score=30.11 Aligned_cols=27 Identities=44% Similarity=0.736 Sum_probs=14.3
Q ss_pred cccccCCCCc----cCCCceeEEEecccccCC
Q psy14320 88 KRSRSEEPED----CRGEEKVEVVLGGAGVDG 115 (253)
Q Consensus 88 tr~~se~~~~----~~gee~~~v~~g~~~~~~ 115 (253)
|=+-.|+|+| |.|.+ +||+||.-.-.+
T Consensus 51 ~L~~~eePeDiDCwC~~v~-v~V~YGrC~~~~ 81 (87)
T PF01570_consen 51 TLDEGEEPEDIDCWCRGVD-VYVTYGRCTRTG 81 (87)
T ss_dssp B-SS-S---S-SEEESSS--EEEEEEEE----
T ss_pred eecccCCCcccceeECCEE-EEEEeeccCCCC
Confidence 4455678998 79999 999999876443
No 35
>PF13316 DUF4087: Protein of unknown function (DUF4087)
Probab=44.76 E-value=14 Score=30.52 Aligned_cols=31 Identities=32% Similarity=0.627 Sum_probs=24.0
Q ss_pred hhhhhhhhceeEE-----eeeeccccCeeeeeecCC
Q psy14320 161 ASKVKQRCGWLVF-----GWVHDRLGNCVLLAFLGP 191 (253)
Q Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 191 (253)
+.+.-.||||+.- -|++||-|+=.+-.--|.
T Consensus 2 a~~aE~RCGW~~NPtPgN~~L~Drdg~W~I~~qGg~ 37 (101)
T PF13316_consen 2 AAAAETRCGWFDNPTPGNWWLTDRDGSWTISVQGGY 37 (101)
T ss_pred ccccccccCcccCCCCCccEEECCCCCEEEecCCcc
Confidence 3456789999974 489999999888765555
No 36
>PRK02186 argininosuccinate lyase; Provisional
Probab=35.10 E-value=32 Score=36.26 Aligned_cols=30 Identities=7% Similarity=-0.168 Sum_probs=27.4
Q ss_pred CHhHHhcCC-------cchHHHHHHHHHHHHHhhhhc
Q psy14320 222 SKEMQHNFS-------DMKKFTTWRQLWIYLAEAQQV 251 (253)
Q Consensus 222 SpEM~~IFS-------denKf~tWRkLwiALAeAea~ 251 (253)
.|+|..||+ ++++++.|.++++|++.++..
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~ 454 (887)
T PRK02186 418 PPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGD 454 (887)
T ss_pred ChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHH
Confidence 788999999 999999999999999997753
No 37
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=33.66 E-value=10 Score=36.87 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=53.0
Q ss_pred cCCCC--CHHHHhcCC-----chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-ccccceeeeccccceeeeec
Q psy14320 13 STRYA--SKEMQHNFS-----DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-LEADRCTVVDSRLGVELERQ 82 (253)
Q Consensus 13 I~RYs--spEMr~IWS-----eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-fDieRI~~~~~~~~ie~e~~ 82 (253)
..||+ ..++...|+ +...+..-+.+++|.+.+..+ |+ |+++.+.|.+... +..+.- ++-+.+. ..+
T Consensus 3 ~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~---~~~~~~~-~~~ 78 (455)
T TIGR00838 3 GGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGR---EGPFILD-PDD 78 (455)
T ss_pred CccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcc---cCCcCCC-CCc
Confidence 45785 455566677 666777778899999999999 95 7664444432211 100000 0001111 122
Q ss_pred cce--eecccccCCCCccCC-CceeEEEecccccC
Q psy14320 83 DDV--GKKRSRSEEPEDCRG-EEKVEVVLGGAGVD 114 (253)
Q Consensus 83 ~~v--aftr~~se~~~~~~g-ee~~~v~~g~~~~~ 114 (253)
+|| +.-+.+.|. +| +-.+|||+|-.--|
T Consensus 79 ~d~~~~ie~~l~e~----~g~~~g~~iH~g~SrnD 109 (455)
T TIGR00838 79 EDIHMAIERELIDR----VGEDLGGKLHTGRSRND 109 (455)
T ss_pred CcHHHHHHHHHHHH----hCCCccCCccCCCChhh
Confidence 443 555666664 36 44679999986554
No 38
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=33.22 E-value=25 Score=31.01 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=29.3
Q ss_pred ceeEEEecccccCCCccee---------------eeeccCCCCccc-ccchhhhhhhccccccceeeccccccCchhhhh
Q psy14320 102 EKVEVVLGGAGVDGGGQVT---------------PVVNENEGGEAD-ESAYTEETEDLKQDEASVAYFSEPLGIDASKVK 165 (253)
Q Consensus 102 e~~~v~~g~~~~~~~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
||+|||||..=..|++... |++|-.-+|.+- |...-+-.-++..|-.++.+... .++..++
T Consensus 1 ~k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~~~~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N---~~~~~~~ 77 (178)
T PF14606_consen 1 EKRWVAYGSSITQGACASRPGMAYPAILARRLGLDVINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPN---MSPEEFR 77 (178)
T ss_dssp --EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT-EEEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHH---CCTTTHH
T ss_pred CCeEEEECChhhcCCCCCCCcccHHHHHHHHcCCCeEeeeecCccccCHHHHHHHhcCCCCEEEEEeecC---CCHHHHH
Confidence 7999999987777766543 466665555442 22222333344334444444333 4555555
Q ss_pred hhh
Q psy14320 166 QRC 168 (253)
Q Consensus 166 ~~~ 168 (253)
+|.
T Consensus 78 ~~~ 80 (178)
T PF14606_consen 78 ERL 80 (178)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 39
>KOG3733|consensus
Probab=29.28 E-value=19 Score=36.82 Aligned_cols=16 Identities=44% Similarity=1.105 Sum_probs=13.7
Q ss_pred hhceeEEeeeeccccC
Q psy14320 167 RCGWLVFGWVHDRLGN 182 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~ 182 (253)
-|||+|.|--||+.-|
T Consensus 430 FCGWIVLGPYHdKFrs 445 (566)
T KOG3733|consen 430 FCGWIVLGPYHDKFRS 445 (566)
T ss_pred heeeEEecchHHhhhh
Confidence 3899999999998765
No 40
>PF08773 CathepsinC_exc: Cathepsin C exclusion domain; InterPro: IPR014882 Cathepsin C (dipeptidyl peptidase I) is the physiological activator of a group of serine proteases. This protein corresponds to the exclusion domain whose structure excludes the approach of a polypeptide apart from its termini. It forms an enclosed beta barrel structure composed from 8 anti-parallel beta strands []. Based on a structural comparison and interaction data, it is suggested that the exclusion domain originates from a metallo-protease inhibitor []. ; PDB: 1JQP_A 2DJG_A 1K3B_A 2DJF_A 3PDF_A.
Probab=26.81 E-value=22 Score=29.78 Aligned_cols=21 Identities=52% Similarity=0.879 Sum_probs=16.5
Q ss_pred hhhhhhhceeEEeeeeccccC
Q psy14320 162 SKVKQRCGWLVFGWVHDRLGN 182 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~ 182 (253)
+++.-.|.=...||+||.+||
T Consensus 88 ~~~~S~C~~T~~GW~hd~~~~ 108 (118)
T PF08773_consen 88 SKVTSYCNETLPGWVHDVLGR 108 (118)
T ss_dssp TEEEEEEEEE-SEEEEETTS-
T ss_pred CEEEeeCCCeeceeEEecccc
Confidence 466778999999999999997
Done!