Query psy14320
Match_columns 253
No_of_seqs 271 out of 944
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 16:52:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eei_A Adenylosuccinate lyase; 99.5 1.3E-16 4.4E-21 149.9 -3.8 93 12-114 1-96 (438)
2 2j91_A Adenylosuccinate lyase; 99.4 2.5E-15 8.7E-20 143.3 -5.1 98 5-112 32-134 (503)
3 1yis_A Adenylosuccinate lyase; 99.4 7.4E-15 2.5E-19 138.6 -6.1 99 5-113 4-109 (478)
4 2fel_A 3-carboxy-CIS,CIS-mucon 99.0 5.6E-12 1.9E-16 115.7 -4.6 98 7-114 5-110 (359)
5 2pfm_A Adenylosuccinate lyase; 99.0 9.6E-12 3.3E-16 116.7 -3.6 97 9-113 7-106 (444)
6 1dof_A Adenylosuccinate lyase; 98.9 8.2E-11 2.8E-15 109.1 -1.1 92 9-113 3-97 (403)
7 3c8t_A Fumarate lyase; structu 98.9 3.3E-11 1.1E-15 113.1 -5.3 96 8-113 3-105 (451)
8 1re5_A 3-carboxy-CIS,CIS-mucon 98.9 1.6E-11 5.5E-16 115.0 -7.7 97 8-114 1-108 (450)
9 1c3c_A Protein (adenylosuccina 98.9 3.4E-11 1.2E-15 112.2 -5.9 91 13-113 1-94 (429)
10 3bhg_A Adenylosuccinate lyase; 98.8 4.6E-11 1.6E-15 112.5 -6.5 102 7-114 10-128 (459)
11 1q5n_A 3-carboxy-CIS,CIS-mucon 98.8 7.2E-11 2.5E-15 110.7 -7.0 102 7-114 2-112 (454)
12 2qga_B Adenylosuccinate lyase; 98.7 2.2E-10 7.4E-15 108.1 -7.3 105 7-114 6-124 (465)
13 2j91_A Adenylosuccinate lyase; 98.3 3.3E-07 1.1E-11 87.6 3.7 44 208-251 31-74 (503)
14 2ptr_A Adenylosuccinate lyase; 98.3 1.7E-08 5.9E-13 95.1 -5.7 105 7-114 7-125 (462)
15 1k7w_A Delta 2 crystallin; eye 97.2 4.6E-06 1.6E-10 78.9 -7.6 92 12-113 11-116 (468)
16 1vdk_A Fumarase C, fumarate hy 89.3 0.017 5.9E-07 54.6 -4.2 34 27-60 42-77 (466)
17 3r6q_A Aspartase; aspartate am 84.7 0.32 1.1E-05 46.3 1.7 52 8-59 15-76 (468)
18 1jsw_A L-aspartase, L-aspartat 81.3 0.39 1.3E-05 45.6 0.8 54 7-60 14-79 (478)
19 1yfm_A Fumarase, YFUM; lyase, 80.4 0.11 3.8E-06 49.7 -3.3 34 27-60 67-102 (488)
20 2e9f_A Argininosuccinate lyase 78.4 0.03 1E-06 52.9 -7.9 76 28-113 29-111 (462)
21 1tj7_A Argininosuccinate lyase 78.2 0.038 1.3E-06 52.1 -7.2 88 14-112 6-109 (457)
22 3ocf_A Fumarate lyase:delta cr 74.2 1.1 3.9E-05 42.9 1.7 53 8-60 33-97 (478)
23 3c5x_C PRM; beta barrel, helic 67.6 2.3 7.7E-05 35.1 1.8 23 91-114 57-83 (130)
24 1fur_A Fumarase C, FUMC; hydro 58.7 2.4 8.2E-05 40.1 0.5 35 27-61 41-77 (467)
25 3ixx_D Peptide PR; WEST NIle v 43.4 10 0.00036 28.9 1.8 20 90-110 55-78 (80)
No 1
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=99.54 E-value=1.3e-16 Score=149.91 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=81.9
Q ss_pred ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHcCC-CCccccCccccccccccceeeeccccceeeeeccc-eeecc
Q psy14320 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKR 89 (253)
Q Consensus 12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaEGI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr 89 (253)
||+||++++|+.|||+++||+.|++||+|+++|+++|+ |.++.+.|++..+||++++.. +|.+++|| +||-|
T Consensus 1 m~~ry~~~~m~~~fs~~~~~~~~l~ve~Ala~a~~~GlIp~~~~~~i~~~~~~d~~~i~~------~e~~~~hdV~a~~~ 74 (438)
T 4eei_A 1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRMVPKGTAAEIRARAQIRPERVDE------IEKVTKHDIIAFCT 74 (438)
T ss_dssp CCGGGCCHHHHHHHSHHHHHHHHHHHHHHHHHHGGGTTSCTTHHHHHHHHCCCCHHHHHH------HHHHHSCHHHHHHH
T ss_pred CCcccCcHHHHHHcChHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhhCCCCHHHHHH------HHHhcCCCHHHHHH
Confidence 89999999999999999999999999999999999985 999888888887777766655 99996555 99999
Q ss_pred cccCCCCccCCCc-eeEEEecccccC
Q psy14320 90 SRSEEPEDCRGEE-KVEVVLGGAGVD 114 (253)
Q Consensus 90 ~~se~~~~~~gee-~~~v~~g~~~~~ 114 (253)
.+.|. +|++ .+|||+|-.--|
T Consensus 75 ~l~e~----~g~~~~~~iH~G~SsnD 96 (438)
T 4eei_A 75 SIAEQ----FTAETGKFFHFGVTSSD 96 (438)
T ss_dssp HHHTT----SCTTTTTTTTCSCCHHH
T ss_pred HHHHH----cCHHhhcccCCCCCHHH
Confidence 99996 4999 999999986544
No 2
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=99.42 E-value=2.5e-15 Score=143.29 Aligned_cols=98 Identities=34% Similarity=0.500 Sum_probs=81.0
Q ss_pred CCcccccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC--CCccccCccccc-cccccceeeeccccceeee
Q psy14320 5 HCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF--RNNIYIDPKHNF-TLEADRCTVVDSRLGVELE 80 (253)
Q Consensus 5 ~~sY~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI--P~~ai~~Ik~~a-~fDieRI~~~~~~~~ie~e 80 (253)
+++|++||..||++++|+.|||+++|++.|+++|+|+|+|+++ |+ |.++.+.|++.. .||.++ +.++|.+
T Consensus 32 ~~~~~spl~~ry~~~~m~~~fS~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~------~~~~e~~ 105 (503)
T 2j91_A 32 PDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKM------AAEEEKR 105 (503)
T ss_dssp TTSCCCHHHHTTSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHH------HHHHHHH
T ss_pred cccccCCcccccCCHHHHHHhChhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHH------Hhhhhhh
Confidence 5579999999999999999999999999999999999999999 97 555777777654 455444 4557877
Q ss_pred eccc-eeecccccCCCCccCCCceeEEEecccc
Q psy14320 81 RQDD-VGKKRSRSEEPEDCRGEEKVEVVLGGAG 112 (253)
Q Consensus 81 ~~~~-vaftr~~se~~~~~~gee~~~v~~g~~~ 112 (253)
+.|| .+|-..+.|. +|+..+|||+|-.-
T Consensus 106 ~~hDV~a~v~~l~e~----~g~~~~~iH~G~TS 134 (503)
T 2j91_A 106 LRHDVMAHVHTFGHC----CPKAAGIIHLGATS 134 (503)
T ss_dssp HSCHHHHHHHHHHHH----CTTTGGGTTTTCCT
T ss_pred cCCcHHHHHHHHHHH----hccccccccCCCCH
Confidence 6555 8988888774 59999999999853
No 3
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=99.36 E-value=7.4e-15 Score=138.58 Aligned_cols=99 Identities=27% Similarity=0.368 Sum_probs=80.5
Q ss_pred CCcccccccCCCCCHH-HHhcCCchhHHHHHHHHHHHHHHHHHc-CC---CCccccCccccc-cccccceeeecccccee
Q psy14320 5 HCKYISPLSTRYASKE-MQHNFSDMKKFTTWRQLWIYLAEAQQS-GF---RNNIYIDPKHNF-TLEADRCTVVDSRLGVE 78 (253)
Q Consensus 5 ~~sY~sPMI~RYsspE-Mr~IWSeEnKfqtWLkVE~ALAeAqaE-GI---P~~ai~~Ik~~a-~fDieRI~~~~~~~~ie 78 (253)
+++|++|+..||++++ |+.|||+++|++.|+++|+|+|+|+++ |+ |.++.+.|++.. .||.++ +.++|
T Consensus 4 ~~~~~spl~~ry~~~~~m~~~fs~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~------~~~~e 77 (478)
T 1yis_A 4 EDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPF------IRSEE 77 (478)
T ss_dssp GGSCCCHHHHTTTTTCTHHHHTSHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHH------HHHHH
T ss_pred CccCCCCcccccCChHHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHH------HhhHH
Confidence 4579999999999999 999999999999999999999999999 97 455777777654 455444 44577
Q ss_pred eeeccc-eeecccccCCCCccCCCceeEEEeccccc
Q psy14320 79 LERQDD-VGKKRSRSEEPEDCRGEEKVEVVLGGAGV 113 (253)
Q Consensus 79 ~e~~~~-vaftr~~se~~~~~~gee~~~v~~g~~~~ 113 (253)
..++|| .+|-..+.|. +|+..+|||+|-.--
T Consensus 78 ~~~~~DV~a~v~~l~e~----~g~~~~~iH~G~TS~ 109 (478)
T 1yis_A 78 RKLKHDVMAHNHAFGKL----CPTAAGIIHLGATSC 109 (478)
T ss_dssp HHSSCHHHHHHHHHHHH----CTTTGGGTTTTCCHH
T ss_pred HhcCCcHHHHHHHHHHh----hhhchhheeCCCchh
Confidence 776555 8888877774 599999999998443
No 4
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=99.02 E-value=5.6e-12 Score=115.67 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=75.6
Q ss_pred cccccccCC-CCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeee
Q psy14320 7 KYISPLSTR-YASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELE 80 (253)
Q Consensus 7 sY~sPMI~R-YsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e 80 (253)
.|.+||+.| |++++|+.|||++++++.|++||+|+++|+++ |+ |.++.+.|.+.. .||+++ +.+.+.+
T Consensus 5 ~~~~~l~~~~~~~~~m~~~fs~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~------~~~~~~~ 78 (359)
T 2fel_A 5 PFEHPFLSGLFGDSEIIELFSAKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSA------LRHGVAK 78 (359)
T ss_dssp TTSCTTTHHHHCCHHHHGGGSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHH------HHHHHHH
T ss_pred cccccccccccCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHH------HHhhccc
Confidence 599999996 59999999999999999999999999999999 95 888777777654 334333 3334444
Q ss_pred eccc-eeecccccCCCCccCCC-ceeEEEecccccC
Q psy14320 81 RQDD-VGKKRSRSEEPEDCRGE-EKVEVVLGGAGVD 114 (253)
Q Consensus 81 ~~~~-vaftr~~se~~~~~~ge-e~~~v~~g~~~~~ 114 (253)
..|+ .+|-+.+.|. +|+ ..+|||+|-.--|
T Consensus 79 ~~~~~~~~~~~l~~~----~g~~~~~~vH~G~SsnD 110 (359)
T 2fel_A 79 DGVVVPELIRQMRAA----VAGQAADKVHFGATSQD 110 (359)
T ss_dssp HSSSHHHHHHHHHTT----SCGGGGGGTTTTCCHHH
T ss_pred cCCcHHHHHHHHHHH----cCccccchhcCCCCHhh
Confidence 3333 8888888874 474 5899999976544
No 5
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=99.01 E-value=9.6e-12 Score=116.65 Aligned_cols=97 Identities=27% Similarity=0.340 Sum_probs=74.7
Q ss_pred cccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccce
Q psy14320 9 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDV 85 (253)
Q Consensus 9 ~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~v 85 (253)
-+-||+||.+++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+..+||+++|. ++|.+. ||++
T Consensus 7 ~~~~~~~~~~~~~~~i~sd~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~d~~~i~------~~~~~~~~dVi 80 (444)
T 2pfm_A 7 HHHMISRYTRPEMGAIWTEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIY------EIEKETRHDVV 80 (444)
T ss_dssp ----CCTTCCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHCCCCHHHHH------HHHHHHCCHHH
T ss_pred hhhHHHhcchHHHHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHH------HHhccCCCCHH
Confidence 467999999999999999999999999999999999999 95 88877888777667655544 466664 5558
Q ss_pred eecccccCCCCccCCCceeEEEeccccc
Q psy14320 86 GKKRSRSEEPEDCRGEEKVEVVLGGAGV 113 (253)
Q Consensus 86 aftr~~se~~~~~~gee~~~v~~g~~~~ 113 (253)
|+-+.+.|.+. .|+..+|||+|-.--
T Consensus 81 a~~~~l~e~~g--~g~~g~~vH~g~Ssn 106 (444)
T 2pfm_A 81 AFTRAVSETPA--LGEERKWVHYGLTST 106 (444)
T ss_dssp HHHHHHHTCTT--CCGGGGGTTTTCCHH
T ss_pred HHHHHHHHHcC--CCcccccccCCCChh
Confidence 99888888531 066778999886543
No 6
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=98.92 E-value=8.2e-11 Score=109.12 Aligned_cols=92 Identities=20% Similarity=0.232 Sum_probs=69.8
Q ss_pred cccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccce
Q psy14320 9 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDV 85 (253)
Q Consensus 9 ~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~v 85 (253)
++|+..||++++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+. .||++++. +++.+. ||++
T Consensus 3 ~sp~~~ry~~~~~~~i~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-~~d~~~~~------~~~~~~~~dVi 75 (403)
T 1dof_A 3 VSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKA-SVSADEVY------RLERETGHDIL 75 (403)
T ss_dssp CCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC-CCCTTTC--------------CHHH
T ss_pred CCCcccccCcHHHHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-CCCHHHHH------HHhhccCCcHH
Confidence 478888999999999999999999999999999999999 95 88877777765 67765554 477765 5558
Q ss_pred eecccccCCCCccCCCceeEEEeccccc
Q psy14320 86 GKKRSRSEEPEDCRGEEKVEVVLGGAGV 113 (253)
Q Consensus 86 aftr~~se~~~~~~gee~~~v~~g~~~~ 113 (253)
|+-+.+.|. +| .+|||+|-.--
T Consensus 76 a~~~~l~e~----~G--g~~vH~g~Ssn 97 (403)
T 1dof_A 76 SLVLLLEQK----SG--CRYVHYGATSN 97 (403)
T ss_dssp HHHHHHHHH----HC--CSCTTTTCCHH
T ss_pred HHHHHHHHH----cC--CCcccCCCChh
Confidence 887777775 36 57899876543
No 7
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=98.88 E-value=3.3e-11 Score=113.06 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=74.7
Q ss_pred ccccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeee
Q psy14320 8 YISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELER 81 (253)
Q Consensus 8 Y~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~ 81 (253)
+.++|++ ||++++|+.|||+.++++.|++||+|+++++++ |+ |.++.+.|.+.. .||++++. +++...
T Consensus 3 ~~~~~~~~ry~~~~~~~~~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~~------~~~~~~ 76 (451)
T 3c8t_A 3 LDSPLYGRSFADDKMRELFSAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLR------DDTEIV 76 (451)
T ss_dssp ---CCSSCCCSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHHH------HHHHHH
T ss_pred CCCCccccccCcHHHHHHcCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHHH------HHhhcC
Confidence 5567777 999999999999999999999999999999999 95 888777777665 56644443 456664
Q ss_pred -ccceeecccccCCCCccCCCceeEEEeccccc
Q psy14320 82 -QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGV 113 (253)
Q Consensus 82 -~~~vaftr~~se~~~~~~gee~~~v~~g~~~~ 113 (253)
||++|+-+.+.|. +|+..+|||+|-.--
T Consensus 77 ~~dVia~~~~l~e~----~g~~g~~vH~g~Ssn 105 (451)
T 3c8t_A 77 GYPILPLVEQLSAH----AGEAGKYLHWGATTQ 105 (451)
T ss_dssp SSSHHHHHHHHHHH----HGGGGGGSSSSCCHH
T ss_pred CCcHHHHHHHHHHH----cccccccccCCCChh
Confidence 5558998877885 477788999886543
No 8
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=98.87 E-value=1.6e-11 Score=114.95 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=75.1
Q ss_pred ccccccCCCCC-HHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeee
Q psy14320 8 YISPLSTRYAS-KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELER 81 (253)
Q Consensus 8 Y~sPMI~RYss-pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~ 81 (253)
+.+||++||++ ++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+.. .||++++ .++|...
T Consensus 1 ~~~~~~~ry~~~~~~~~i~s~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~------~~~~~~~ 74 (450)
T 1re5_A 1 MSNQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGAL------ANAIATA 74 (450)
T ss_dssp --CCTTHHHHSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHH------HHHHHHH
T ss_pred CCCcchhhccCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHH------HHHHhcc
Confidence 46789999999 99999999999999999999999999999 95 887777776653 4555544 3456654
Q ss_pred -ccceeecccccCCCCccCC---Cc-eeEEEecccccC
Q psy14320 82 -QDDVGKKRSRSEEPEDCRG---EE-KVEVVLGGAGVD 114 (253)
Q Consensus 82 -~~~vaftr~~se~~~~~~g---ee-~~~v~~g~~~~~ 114 (253)
||++|+-+.+.|. +| ++ .+|||+|-.--|
T Consensus 75 ~~dV~a~~~~l~e~----~g~~~~~~~~~vh~g~SsnD 108 (450)
T 1re5_A 75 GNSAIPLVKALGKV----IATGVPEAERYVHLGATSQD 108 (450)
T ss_dssp SSSHHHHHHHHHHH----HHHHCGGGGGGTTTTCCHHH
T ss_pred CccHHHHHHHHHHH----hCCCCCcccccccCCCChhh
Confidence 5558887767774 47 77 899999975433
No 9
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=98.86 E-value=3.4e-11 Score=112.16 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=74.0
Q ss_pred cCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccceeecc
Q psy14320 13 STRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDVGKKR 89 (253)
Q Consensus 13 I~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~vaftr 89 (253)
++||++++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+..+||+++|. +.+.+. ||++|+-+
T Consensus 1 ~~ry~~~~~~~~~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~------~~~~~~~~dVia~~~ 74 (429)
T 1c3c_A 1 VERYSLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFK------KIEEKTNHDVVAFVE 74 (429)
T ss_dssp CGGGCCTTHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHH------HHHHHHCCHHHHHHH
T ss_pred CCCcccHHHHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHH------HHHhccCCChHHHHH
Confidence 47999999999999999999999999999999999 95 88888888777667755544 356654 55589987
Q ss_pred cccCCCCccCCCceeEEEeccccc
Q psy14320 90 SRSEEPEDCRGEEKVEVVLGGAGV 113 (253)
Q Consensus 90 ~~se~~~~~~gee~~~v~~g~~~~ 113 (253)
.+.|. +|+..+|||+|-.--
T Consensus 75 ~l~e~----~g~~g~~vH~g~Ssn 94 (429)
T 1c3c_A 75 GIGSM----IGEDSRFFHYGLTSS 94 (429)
T ss_dssp HHHHH----HGGGGGGTTTTCCHH
T ss_pred HHHHH----cCcccccccCCCChh
Confidence 77775 488889999886543
No 10
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=98.82 E-value=4.6e-11 Score=112.49 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=77.5
Q ss_pred cccccccCCCCCH--HHHhcCCchhHHHHHHHHHHHHHHHHHc--CCC------CccccCccccc-cc---cccceeeec
Q psy14320 7 KYISPLSTRYASK--EMQHNFSDMKKFTTWRQLWIYLAEAQQS--GFR------NNIYIDPKHNF-TL---EADRCTVVD 72 (253)
Q Consensus 7 sY~sPMI~RYssp--EMr~IWSeEnKfqtWLkVE~ALAeAqaE--GIP------~~ai~~Ik~~a-~f---DieRI~~~~ 72 (253)
.+++|+..||+++ +|+.+||++++++.|+++|+|+++|+++ ||| .++.+.|++.. .| |+ +
T Consensus 10 ~~~s~~~gRy~~~~~~~~~~fsd~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d~------~ 83 (459)
T 3bhg_A 10 NAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEA------E 83 (459)
T ss_dssp GCSSTTTTTTHHHHGGGTTTSSHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHHH------H
T ss_pred cccCcccccccCChHHHHHHcCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccccH------H
Confidence 4788999999998 9999999999999999999999999999 574 34666666553 34 33 3
Q ss_pred cccceeeeeccc-eeecccccCCCCcc--CCCceeEEEecccccC
Q psy14320 73 SRLGVELERQDD-VGKKRSRSEEPEDC--RGEEKVEVVLGGAGVD 114 (253)
Q Consensus 73 ~~~~ie~e~~~~-vaftr~~se~~~~~--~gee~~~v~~g~~~~~ 114 (253)
++.++|.++.|| +||-+.+.|...+. +++..+|||+|-.--|
T Consensus 84 ~~~~~e~~~~~Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnD 128 (459)
T 3bhg_A 84 KIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSED 128 (459)
T ss_dssp HHHHHTTTCSSHHHHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHhcccccCchhhhhhcCCCCHHh
Confidence 455689886666 89888888854221 1345899999976543
No 11
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=98.77 E-value=7.2e-11 Score=110.67 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=74.9
Q ss_pred cccccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc-----cccccceeeecccccee
Q psy14320 7 KYISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF-----TLEADRCTVVDSRLGVE 78 (253)
Q Consensus 7 sY~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a-----~fDieRI~~~~~~~~ie 78 (253)
++-+||++ ||++++|+.|||+.++++.|++||+|+++++++ |+ |.++.+.|.+.. .||+++ +.+++
T Consensus 2 ~~~~~~~~~ry~~~~~~~~~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~------~~~~~ 75 (454)
T 1q5n_A 2 SHMSQLYASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDA------LATAT 75 (454)
T ss_dssp ----CTTHHHHSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCHHH------HHHHH
T ss_pred CCCCCccccccCcHHHHHHcCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhcCCHHH------HHHHh
Confidence 35577888 999999999999999999999999999999999 95 887777776654 455443 33456
Q ss_pred eee-ccceeecccccCCCCccCCCceeEEEecccccC
Q psy14320 79 LER-QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVD 114 (253)
Q Consensus 79 ~e~-~~~vaftr~~se~~~~~~gee~~~v~~g~~~~~ 114 (253)
... ||++|+-+.+.|-+...+|+..+|||+|-.--|
T Consensus 76 ~~~~~dVia~~~~l~e~~g~~~g~~~~~vH~g~SsnD 112 (454)
T 1q5n_A 76 GLAGNIAIPFVKQLTAIVKDADEDAARYVHWGATSQD 112 (454)
T ss_dssp HHHSSSHHHHHHHHHHHHHTTCTTGGGGTTTTCCHHH
T ss_pred hccCCcHHHHHHHHHHHhccccCCccccccCCCChhh
Confidence 664 555888777777432223888899998865433
No 12
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=98.66 E-value=2.2e-10 Score=108.07 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=76.0
Q ss_pred cccccccCCCCCH--HHHhcCCchhHHHHHHHHHHHHHHHHHc--CC-CCccccCcccc----ccccccceeeeccccce
Q psy14320 7 KYISPLSTRYASK--EMQHNFSDMKKFTTWRQLWIYLAEAQQS--GF-RNNIYIDPKHN----FTLEADRCTVVDSRLGV 77 (253)
Q Consensus 7 sY~sPMI~RYssp--EMr~IWSeEnKfqtWLkVE~ALAeAqaE--GI-P~~ai~~Ik~~----a~fDieRI~~~~~~~~i 77 (253)
+.++|+..||+++ +|+.+||++++++.|+++|+|+++++++ || |..+.+.|... ..|+.+ . .+++.++
T Consensus 6 ~~~s~~~gRy~~~~~~~~~~~sd~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~l~~~~~~~~~~--d-~~~i~~~ 82 (465)
T 2qga_B 6 KNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDS--D-IARVKAI 82 (465)
T ss_dssp GCSSTTTTTTHHHHGGGGGTSSHHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHHCCCHH--H-HHHHHHH
T ss_pred cccCcccccccCCcHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccc--c-HHHHHHH
Confidence 4678888899997 8999999999999999999999999999 75 76655555421 123110 0 1344568
Q ss_pred eeeeccc-eeecccccCCCCcc----CCCceeEEEecccccC
Q psy14320 78 ELERQDD-VGKKRSRSEEPEDC----RGEEKVEVVLGGAGVD 114 (253)
Q Consensus 78 e~e~~~~-vaftr~~se~~~~~----~gee~~~v~~g~~~~~ 114 (253)
|.+++|| +||-+.+.|...+. +|+..+|||+|-.--|
T Consensus 83 e~~~~hDV~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnD 124 (465)
T 2qga_B 83 EEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSED 124 (465)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHH
T ss_pred hhccCCChHHHHHHHHHHhcccccccchhhhhhccCCCChhh
Confidence 8875555 99999998864211 1277999999976544
No 13
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=98.28 E-value=3.3e-07 Score=87.57 Aligned_cols=44 Identities=59% Similarity=0.936 Sum_probs=41.1
Q ss_pred CcCccccccccccCCHhHHhcCCcchHHHHHHHHHHHHHhhhhc
Q psy14320 208 EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQV 251 (253)
Q Consensus 208 ~~~~y~~pLi~RYASpEM~~IFSdenKf~tWRkLwiALAeAea~ 251 (253)
++++|.+||..||++++|+.|||+++||++|+++|+++|+|++.
T Consensus 31 ~~~~~~spl~~ry~~~~m~~~fS~~~~~~~~~~~e~Ala~a~~~ 74 (503)
T 2j91_A 31 SPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 74 (503)
T ss_dssp CTTSCCCHHHHTTSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCcccccCCHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999998863
No 14
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=98.25 E-value=1.7e-08 Score=95.12 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=73.8
Q ss_pred cccccccCCCCCH--HHHhcCCchhHHHHHHHHHHHHHHHHHc-C-CC------CccccCccccc-cccccceeeecccc
Q psy14320 7 KYISPLSTRYASK--EMQHNFSDMKKFTTWRQLWIYLAEAQQS-G-FR------NNIYIDPKHNF-TLEADRCTVVDSRL 75 (253)
Q Consensus 7 sY~sPMI~RYssp--EMr~IWSeEnKfqtWLkVE~ALAeAqaE-G-IP------~~ai~~Ik~~a-~fDieRI~~~~~~~ 75 (253)
.+++|+..||+++ +|+.+||+++.++.|+++|+|+++|+++ | || .++.+.|.+.. .|... -++.+.
T Consensus 7 ~~~s~~~gRy~~~~~~~~~~fsd~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g---~~~~~~ 83 (462)
T 2ptr_A 7 TAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEE---DAARIK 83 (462)
T ss_dssp TCSSTTTTTTGGGSGGGGGTTSHHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHH---HHHHHH
T ss_pred cccCcccccccCchHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccC---CHHHHH
Confidence 3788988999997 9999999999999999999999999999 5 64 34556666543 23100 124455
Q ss_pred ceeeeeccc-eeecccccCCCCcc--CCCceeEEEecccccC
Q psy14320 76 GVELERQDD-VGKKRSRSEEPEDC--RGEEKVEVVLGGAGVD 114 (253)
Q Consensus 76 ~ie~e~~~~-vaftr~~se~~~~~--~gee~~~v~~g~~~~~ 114 (253)
++|..+.|| .++-+.+.|.+.+. +++-.+|||+|-.--|
T Consensus 84 ~~~~~~~~dv~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnD 125 (462)
T 2ptr_A 84 TIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSED 125 (462)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHH
T ss_pred hhccccCCCHHHHHHHHHHHhccccCCcchhhhccCCCCHHH
Confidence 677665555 88888887643110 0124689999876443
No 15
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=97.16 E-value=4.6e-06 Score=78.90 Aligned_cols=92 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred ccCCCCCHH--HHhcCC-----chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeecccccee---e
Q psy14320 12 LSTRYASKE--MQHNFS-----DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVE---L 79 (253)
Q Consensus 12 MI~RYsspE--Mr~IWS-----eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie---~ 79 (253)
+-.||+++. |..+|+ +.+.++.|+++|+|+++|+++ |+ |.++.+.|.+..+ +|. +++.+.+ .
T Consensus 11 ~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~----~i~--~~~~~~~f~~~ 84 (468)
T 1k7w_A 11 WGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLE----KIS--EEWSKGVFVVK 84 (468)
T ss_dssp --------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH----HHH--HHHHHTCCCCC
T ss_pred cccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH----HHH--hhhhcccCccC
Confidence 445998777 999999 999999999999999999999 95 8877777776542 111 1222222 1
Q ss_pred eeccc--eeecccccCCCCccCCCceeEEEeccccc
Q psy14320 80 ERQDD--VGKKRSRSEEPEDCRGEEKVEVVLGGAGV 113 (253)
Q Consensus 80 e~~~~--vaftr~~se~~~~~~gee~~~v~~g~~~~ 113 (253)
...|| .++-+.+.|. +|+..+|||+|-.--
T Consensus 85 ~~~~dv~m~~~~~l~e~----~g~~g~~vH~g~Ssn 116 (468)
T 1k7w_A 85 QSDEDIHTANERRLKEL----IGDIAGKLHTGRSRN 116 (468)
T ss_dssp TTCCSHHHHHHHHHHHH----HCGGGGGGGTTCCHH
T ss_pred CCCCchHHHHHHHHHHH----ccccccceecCCChh
Confidence 23444 4888888775 488889999886543
No 16
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=89.26 E-value=0.017 Score=54.64 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccc
Q psy14320 27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHN 60 (253)
Q Consensus 27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~ 60 (253)
+.++++.|++||+|+|+|+++ |+ |.++.+.|.+.
T Consensus 42 ~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a 77 (466)
T 1vdk_A 42 PLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQA 77 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 578999999999999999999 95 88766666554
No 17
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=84.73 E-value=0.32 Score=46.31 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=42.9
Q ss_pred ccccccCCCCCHHHHhc--C--C----chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccc
Q psy14320 8 YISPLSTRYASKEMQHN--F--S----DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKH 59 (253)
Q Consensus 8 Y~sPMI~RYsspEMr~I--W--S----eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~ 59 (253)
..-|-..+|+...||.+ | | +...++.|+.|+.|+|+|+++ |+ |.++.+.|.+
T Consensus 15 ~~vp~~~~yg~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~ 76 (468)
T 3r6q_A 15 KEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVK 76 (468)
T ss_dssp EEECTTCCCCHHHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccCCcccccCHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45577789999999999 9 5 679999999999999999999 95 7765555543
No 18
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=81.31 E-value=0.39 Score=45.57 Aligned_cols=54 Identities=11% Similarity=-0.063 Sum_probs=39.9
Q ss_pred cccccccCCCCCH--HHHhcCC--------chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccc
Q psy14320 7 KYISPLSTRYASK--EMQHNFS--------DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHN 60 (253)
Q Consensus 7 sY~sPMI~RYssp--EMr~IWS--------eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~ 60 (253)
...-|...+|+.. .....|+ +.+.++.|++||+|+++|+++ |+ |.++.+.|.+.
T Consensus 14 ~~~vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a 79 (478)
T 1jsw_A 14 TREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAA 79 (478)
T ss_dssp EEEEESSCCCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CcCCCCccccchHHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4556666777633 2334444 689999999999999999999 95 87777776655
No 19
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=80.35 E-value=0.11 Score=49.74 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccc
Q psy14320 27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHN 60 (253)
Q Consensus 27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~ 60 (253)
+++.++.|++|++|+|+|+++ |+ |.++.+.|.+.
T Consensus 67 ~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a 102 (488)
T 1yfm_A 67 PLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQA 102 (488)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 467899999999999999999 95 88766666544
No 20
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=78.35 E-value=0.03 Score=52.92 Aligned_cols=76 Identities=9% Similarity=-0.085 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeecccccee----eeeccc-eeecccccCCCCccCC
Q psy14320 28 MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVE----LERQDD-VGKKRSRSEEPEDCRG 100 (253)
Q Consensus 28 EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie----~e~~~~-vaftr~~se~~~~~~g 100 (253)
..-+.....+|+|+++|+++ |+ |.++.+.|.+... +|. ++..+.+ ...||. .++-+.+.|. +|
T Consensus 29 ~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~----~i~--~~~~~~~f~~~~~~~dv~~~~~~~l~e~----~g 98 (462)
T 2e9f_A 29 RALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLD----RIE--EEIEAGTFPWREELEDVHMNLEARLTEL----VG 98 (462)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH----HHH--HHHHHTCSCCCGGGCSHHHHHHHHHHHH----HC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH----HHH--hhHhcccCCcCCCCCchHHHHHHHHHHH----cc
Confidence 45667888999999999999 95 8777777776542 111 1222222 124555 7887777775 48
Q ss_pred CceeEEEeccccc
Q psy14320 101 EEKVEVVLGGAGV 113 (253)
Q Consensus 101 ee~~~v~~g~~~~ 113 (253)
+..+|||+|-.--
T Consensus 99 ~~g~~vH~g~Ssn 111 (462)
T 2e9f_A 99 PPGGKLHTARSRN 111 (462)
T ss_dssp TTHHHHTTTCCHH
T ss_pred ccccceecCCChh
Confidence 8889999886543
No 21
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=78.20 E-value=0.038 Score=52.13 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=57.4
Q ss_pred CCC--CCHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-ccccceeeeccccceee----
Q psy14320 14 TRY--ASKEMQHNFSD-----MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-LEADRCTVVDSRLGVEL---- 79 (253)
Q Consensus 14 ~RY--sspEMr~IWSe-----EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-fDieRI~~~~~~~~ie~---- 79 (253)
.|| .+.+....|+. ..-+..-+.+++|+++++++ |+ |.++.+.|.+... |+ +++.+.|.
T Consensus 6 gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~-------~~~~~~~~~~~~ 78 (457)
T 1tj7_A 6 GRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLL-------EDVRARPQQILE 78 (457)
T ss_dssp TTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-------HHHHHCGGGGGG
T ss_pred cccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-------hhHhcCCcCcCC
Confidence 466 33444455553 56677788899999999999 95 8887777776642 22 22333333
Q ss_pred eeccc-e-eecccccCCCCccCCCceeEEEecccc
Q psy14320 80 ERQDD-V-GKKRSRSEEPEDCRGEEKVEVVLGGAG 112 (253)
Q Consensus 80 e~~~~-v-aftr~~se~~~~~~gee~~~v~~g~~~ 112 (253)
...|| . ++-+.+.|. +|+..+|||+|-.-
T Consensus 79 ~~~~dv~~~v~~~l~e~----~g~~g~~vH~g~Ss 109 (457)
T 1tj7_A 79 SDAEDIHSWVEGKLIDK----VGQLGKKLHTGRSR 109 (457)
T ss_dssp SCCSSHHHHHHHHHHHH----HGGGGGGTTTTCCH
T ss_pred CCCCcHHHHHHHHHHHH----ccccccceecCCCh
Confidence 22455 4 577777775 47777999988654
No 22
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=74.19 E-value=1.1 Score=42.87 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=42.3
Q ss_pred ccccccCCCCCHHHHhc--C--Cc------hhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccc
Q psy14320 8 YISPLSTRYASKEMQHN--F--SD------MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHN 60 (253)
Q Consensus 8 Y~sPMI~RYsspEMr~I--W--Se------EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~ 60 (253)
..-|-..+|+...||.+ | |. ...++.|+.|+.|+|.|+++ |+ |.++.+.|.+.
T Consensus 33 ~~vp~~~~yG~qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a 97 (478)
T 3ocf_A 33 RDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAA 97 (478)
T ss_dssp EEECTTCSSCHHHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred ccCCcccccCHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 44567789999999999 8 53 58899999999999999999 95 77655555433
No 23
>3c5x_C PRM; beta barrel, helicase, hydrolase, NUC binding, RNA replication, transmembrane, viral protein; HET: NAG NDG SHD BMA; 2.20A {Dengue virus 2} PDB: 3c6e_C* 3c6d_D 3ixy_D 3iya_D 3c6r_D
Probab=67.59 E-value=2.3 Score=35.09 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=18.6
Q ss_pred ccCCCCc--c--CCCceeEEEecccccC
Q psy14320 91 RSEEPED--C--RGEEKVEVVLGGAGVD 114 (253)
Q Consensus 91 ~se~~~~--~--~gee~~~v~~g~~~~~ 114 (253)
..|+|+| | .| +.+||+||.-+-.
T Consensus 57 ~~eEPeDiDCWC~~-~~v~V~YGrC~~~ 83 (130)
T 3c5x_C 57 RQNEPEDIDCWCNS-TSTWVTYGTCTTM 83 (130)
T ss_dssp SSSCCCSCSEEESS-SCEEEEEEEEC--
T ss_pred CCcCCCCcceeeCC-CcEEEEEeeccCC
Confidence 5699999 8 89 9999999996533
No 24
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=58.74 E-value=2.4 Score=40.14 Aligned_cols=35 Identities=6% Similarity=-0.058 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320 27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF 61 (253)
Q Consensus 27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a 61 (253)
+++.++.|++|++|+|+|+++ |+ |.++.+.|.+..
T Consensus 41 ~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~ 77 (467)
T 1fur_A 41 PTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAA 77 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 778999999999999999999 95 887766666553
No 25
>3ixx_D Peptide PR; WEST NIle virus, WNV, immature, fusion loop, ATP- binding, envelope protein, helicase, hydrolase, membrane; 15.00A {West nile virus}
Probab=43.42 E-value=10 Score=28.85 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=15.7
Q ss_pred cccCCCCc----cCCCceeEEEecc
Q psy14320 90 SRSEEPED----CRGEEKVEVVLGG 110 (253)
Q Consensus 90 ~~se~~~~----~~gee~~~v~~g~ 110 (253)
+-.|+|+| |.|.+ +||+||.
T Consensus 55 ~~~eeP~DIDCwC~~~~-v~V~YGr 78 (80)
T 3ixx_D 55 SAGNDPEDIDCWCTKSA-VYVRYGR 78 (80)
T ss_pred CCCCCccceeeeECCCe-EEEEEec
Confidence 33477887 78888 9999985
Done!