RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14320
(253 letters)
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 74.2 bits (183), Expect = 2e-15
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 199 TSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
+ + Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q
Sbjct: 22 SMAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73
Score = 73.5 bits (181), Expect = 3e-15
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 4 EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 46
Y SPL++RYAS EM FSD KF TWRQLW++LAEA+Q
Sbjct: 31 SPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 68.5 bits (168), Expect = 2e-13
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 4 EHCKYISPLSTRYASKE-MQHNFSDMKKFTTWRQLWIYLAEAQQ 46
K+ S LSTRY + S+ K T WRQLWI+LAEA++
Sbjct: 3 SEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46
Score = 68.5 bits (168), Expect = 2e-13
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 208 EHCKYISPLSTRYASKE-MQHNFSDMKKFTTWRQLWIYLAEAQQ 250
K+ S LSTRY + S+ K T WRQLWI+LAEA++
Sbjct: 3 SEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 56.5 bits (137), Expect = 1e-09
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
++SP RY S+E++ F++ + ++ L A
Sbjct: 2 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 39
Score = 56.5 bits (137), Expect = 1e-09
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
++SP RY S+E++ F++ + ++ L A
Sbjct: 2 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 39
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 39.2 bits (92), Expect = 7e-04
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 11 PLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
+ +RY EM +++ KF W ++ I EA
Sbjct: 9 HMISRYTRPEMGAIWTEENKFKAWLEVEILACEAW 43
Score = 39.2 bits (92), Expect = 7e-04
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 215 PLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
+ +RY EM +++ KF W ++ I EA
Sbjct: 9 HMISRYTRPEMGAIWTEENKFKAWLEVEILACEAW 43
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 38.5 bits (90), Expect = 0.001
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 15 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSG 48
RY E+ ++D K+ ++ + + EA +
Sbjct: 4 RYDVAEISKIWADENKYAKMLEVELAILEALEDR 37
Score = 37.3 bits (87), Expect = 0.004
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 219 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
RY E+ ++D K+ ++ + + EA
Sbjct: 4 RYDVAEISKIWADENKYAKMLEVELAILEAL 34
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.002
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 139 ETEDLKQDEASVAYF---SEP-LGIDAS 162
E + LK+ +AS+ + S P L I A+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 37.3 bits (87), Expect = 0.003
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 9 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
+ + M+ FSD + LA A+
Sbjct: 3 NQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAE 39
Score = 37.3 bits (87), Expect = 0.003
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 213 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
+ + M+ FSD + LA A+
Sbjct: 3 NQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAE 39
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 37.3 bits (87), Expect = 0.004
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 15 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
RY+ M+ +++ K+ W ++ + + A
Sbjct: 3 RYSLSPMKDLWTEEAKYRRWLEVELAVTRAY 33
Score = 37.3 bits (87), Expect = 0.004
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 219 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
RY+ M+ +++ K+ W ++ + + A
Sbjct: 3 RYSLSPMKDLWTEEAKYRRWLEVELAVTRAY 33
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 35.3 bits (82), Expect = 0.014
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 10 SPL-STRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
SPL +A +M+ FS + + + LA AQ
Sbjct: 5 SPLYGRSFADDKMRELFSAQSFISRCVETEVALARAQ 41
Score = 35.3 bits (82), Expect = 0.014
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 214 SPL-STRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
SPL +A +M+ FS + + + LA AQ
Sbjct: 5 SPLYGRSFADDKMRELFSAQSFISRCVETEVALARAQ 41
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 35.4 bits (82), Expect = 0.015
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
++ + +++ FSD + + + LA+AQ
Sbjct: 8 YASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQ 41
Score = 35.4 bits (82), Expect = 0.015
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
++ + +++ FSD + + + LA+AQ
Sbjct: 8 YASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQ 41
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 34.9 bits (81), Expect = 0.019
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
LS + E+ FS + LA+A+
Sbjct: 11 LSGLFGDSEIIELFSAKADIDAMIRFETALAQAE 44
Score = 34.9 bits (81), Expect = 0.019
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
LS + E+ FS + LA+A+
Sbjct: 11 LSGLFGDSEIIELFSAKADIDAMIRFETALAQAE 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.62
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 36/125 (28%)
Query: 61 FTLEADRCTVVDSR---LGVELERQDDVGKKRSR--SEEPEDCR---GEEKVEVVLGGAG 112
++E VV R + V + R D++G+ + P +E ++ V+ G
Sbjct: 1777 MSIE-SLVEVVFYRGMTMQVAVPR-DELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 113 VDGGGQVTPVVNENEGGEADESAYTEETEDLKQ-----DEASVAYFSEPL------GIDA 161
G V +VN N + Q D ++ + L ID
Sbjct: 1835 KRTGWLVE-IVNYNVENQ--------------QYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 162 SKVKQ 166
++++
Sbjct: 1880 IELQK 1884
>3b9o_A Alkane monoxygenase; LADA, alkane hydroxylase, monooxygenase,
plasmid, oxidoreductase; HET: FMN; 1.90A {Geobacillus
thermodenitrificans} PDB: 3b9n_A*
Length = 440
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 119 VTPVVNENEGGEADESAYTEETEDLKQDEASVAYFSEPLGIDASK 163
+ +V + EA E + E +A++ G D SK
Sbjct: 281 ICVIVGKTHD-EAMEKL--NSFQKYWSLEGHLAHYGGGTGYDLSK 322
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 27.6 bits (61), Expect = 4.1
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 202 SSNMDHEHCKYISPLSTRYASK--EMQHNFS 230
S+ M ISP+ RY +K + FS
Sbjct: 1 SNAMTLTALNAISPIDGRYVNKTRALSPYFS 31
>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein,
structural genomics, PSI, protein struct initiative;
2.90A {Legionella pneumophila} SCOP: c.108.1.23
Length = 470
Score = 27.3 bits (60), Expect = 5.4
Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 3/130 (2%)
Query: 113 VDGGGQVTPVVNENEGGEADESAYTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLV 172
G +T V G + TEDL + Y + + D ++K+ C W
Sbjct: 261 NPENGTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRT 320
Query: 173 FGWVHDRLGNCVLLAFLGPTQAVNSTTSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDM 232
V + P + + E + L TR + Q ++
Sbjct: 321 ALVVEELGEEIASQIRALPIEKKIGEAMA---IKKELEQKYVDLCTRSIDESSQQYDQEI 377
Query: 233 KKFTTWRQLW 242
Sbjct: 378 HDLQLQISTV 387
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 26.5 bits (59), Expect = 8.5
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 119 VTPVVNENEGGEADESAYTEE 139
+ VV + ++ AY +
Sbjct: 160 IKVVVKPEGAWDFEKGAYEGK 180
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 26.5 bits (58), Expect = 9.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 1 MDHEHCKYISPLSTRYASK--EMQHNFS 26
M+ +SP+ RY K ++ FS
Sbjct: 1 MELSSLTAVSPVDGRYGDKVSALRGIFS 28
Score = 26.5 bits (58), Expect = 9.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 205 MDHEHCKYISPLSTRYASK--EMQHNFS 230
M+ +SP+ RY K ++ FS
Sbjct: 1 MELSSLTAVSPVDGRYGDKVSALRGIFS 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.397
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,855,967
Number of extensions: 215382
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 29
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)