RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14320
         (253 letters)



>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon
          Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 402

 Score = 56.5 bits (135), Expect = 5e-10
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          ++SP   RY S+E++  F++      + ++   L  A 
Sbjct: 1  HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 38



 Score = 56.5 bits (135), Expect = 5e-10
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           ++SP   RY S+E++  F++      + ++   L  A 
Sbjct: 1   HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 38


>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga
          maritima [TaxId: 2336]}
          Length = 429

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 15 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          RY+   M+  +++  K+  W ++ + +  A 
Sbjct: 3  RYSLSPMKDLWTEEAKYRRWLEVELAVTRAY 33



 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 219 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           RY+   M+  +++  K+  W ++ + +  A 
Sbjct: 3   RYSLSPMKDLWTEEAKYRRWLEVELAVTRAY 33


>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
          (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
          Length = 448

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
              + +  M+  FSD  +          LA A+
Sbjct: 4  FDAYFTAPAMREIFSDRGRLQGMLDFEAALARAE 37



 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
               + +  M+  FSD  +          LA A+
Sbjct: 4   FDAYFTAPAMREIFSDRGRLQGMLDFEAALARAE 37


>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
          (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
          Length = 444

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
           ++ +  +++   FSD    +   +  + LA+AQ
Sbjct: 3  YASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQ 36



 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
            ++ +  +++   FSD    +   +  + LA+AQ
Sbjct: 3   YASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQ 36


>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
          [Bacillus sp. NRRL B-14911] 
          gi|89084274|gb|EAR63432.1| adenylosuccinate lyase
          [Bacillus sp. NRRL B-14911]  E=0 s/c=1.85 id=87%
          cov=100%
          Length = 408

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 20 EMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          EM   +++  +F  W ++ I   EA 
Sbjct: 1  EMGAIWTEENRFKAWLEVEILACEAW 26



 Score = 37.5 bits (86), Expect = 0.001
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 224 EMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           EM   +++  +F  W ++ I   EA 
Sbjct: 1   EMGAIWTEENRFKAWLEVEILACEAW 26


>d2djfa1 b.61.5.1 (A:1-118) Dipeptidyl peptidase I (cathepsin C),
           exclusion domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 25.5 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 160 DASKVKQRCGWLVFGWVHDRLGN 182
           + SKV   C   + GWVHD LG 
Sbjct: 86  EGSKVTTYCNETMTGWVHDVLGR 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 939,929
Number of extensions: 40307
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 11
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)