BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14321
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG R
Sbjct: 359 RRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSR 418
Query: 62 QVCHEKIR 69
Q CHEKIR
Sbjct: 419 QDCHEKIR 426
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
+RR+ L+E+FLT D +L TLQN+ +GLVVYPKVI+R
Sbjct: 358 NRRICLAEAFLTADTILNTLQNISEGLVVYPKVIER 393
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG R
Sbjct: 359 RRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSR 418
Query: 62 QVCHEKIR 69
Q CHEKIR
Sbjct: 419 QDCHEKIR 426
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
+RR+ L+E+FLT D +L TLQN+ +GLVVYPKVI+R
Sbjct: 358 NRRICLAEAFLTADTILNTLQNISEGLVVYPKVIER 393
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG R
Sbjct: 340 RRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSR 399
Query: 62 QVCHEKIR 69
Q CHEKIR
Sbjct: 400 QDCHEKIR 407
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
+RR+ L+E+FLT D +L TLQN+ +GLVVYPKVI+R
Sbjct: 339 NRRICLAEAFLTADTILNTLQNISEGLVVYPKVIER 374
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG R
Sbjct: 340 RRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSR 399
Query: 62 QVCHEKIR 69
Q CHEKIR
Sbjct: 400 QDCHEKIR 407
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
+RR+ L+E+FLT D +L TLQN+ +GLVVYPKVI+R
Sbjct: 339 NRRICLAEAFLTADTILNTLQNISEGLVVYPKVIER 374
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R + + LT + LL TLQN+ EGL V +++ ++ E+ F+ E + + G DR
Sbjct: 333 RRXLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAXXXLTEEGVDR 392
Query: 62 QVCHEKIR 69
Q H IR
Sbjct: 393 QQAHAVIR 400
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQRL 114
RR + + LT + LL TLQN+ +GL V ++++
Sbjct: 333 RRXLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKI 368
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ + E+ L D +L + VL+ + + + I ++ + LP++ TE + M+K G R
Sbjct: 309 ERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASR 368
Query: 62 QVCHEKIR 69
++K +
Sbjct: 369 AEAYKKAK 376
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 8 ESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
E F +L + +L GL V+P ++ ++D + E ++MA+ G ++
Sbjct: 327 EGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTGRKE 381
>pdb|1OGY|A Chain A, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|C Chain C, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|E Chain E, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|G Chain G, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|I Chain I, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|K Chain K, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|M Chain M, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|O Chain O, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
Length = 802
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 60 DRQVCHEKIRGALNPLFPHRRLTLSES 86
DR++ HE +R A+ F HR LS++
Sbjct: 202 DRRLSHEHVRVAVLSTFTHRSSDLSDT 228
>pdb|2WQD|A Chain A, Crystal Structure Of Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System In
The Dephosphorylated State
Length = 572
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 42 LPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLS 84
L M + +++ + GGD+++ + + +NP +R + LS
Sbjct: 323 LEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLS 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,030,207
Number of Sequences: 62578
Number of extensions: 102540
Number of successful extensions: 216
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 16
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)