Query psy14321
Match_columns 124
No_of_seqs 122 out of 1029
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:53:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0015 PurB Adenylosuccinate 99.8 1.7E-20 3.6E-25 158.5 7.3 108 1-109 315-422 (438)
2 PRK07492 adenylosuccinate lyas 99.7 5.9E-18 1.3E-22 142.9 9.3 94 1-95 311-404 (435)
3 PRK07380 adenylosuccinate lyas 99.7 1.2E-17 2.6E-22 140.9 9.1 92 1-93 308-400 (431)
4 PRK08470 adenylosuccinate lyas 99.7 2.1E-17 4.6E-22 139.6 9.0 93 1-93 308-411 (442)
5 cd03302 Adenylsuccinate_lyase_ 99.7 1.8E-16 4E-21 133.7 6.9 89 1-90 320-414 (436)
6 PRK09285 adenylosuccinate lyas 99.6 1.6E-15 3.5E-20 128.8 9.2 86 1-91 342-430 (456)
7 PRK09053 3-carboxy-cis,cis-muc 99.6 2.2E-15 4.7E-20 127.5 7.5 87 2-90 325-411 (452)
8 PRK08937 adenylosuccinate lyas 99.6 1.3E-14 2.7E-19 111.2 9.4 88 2-90 106-193 (216)
9 PRK06390 adenylosuccinate lyas 99.5 2.2E-14 4.7E-19 121.5 7.9 88 1-90 320-407 (451)
10 PRK08540 adenylosuccinate lyas 99.5 6.9E-14 1.5E-18 118.2 9.4 89 1-90 320-408 (449)
11 PLN02848 adenylosuccinate lyas 99.5 4.3E-13 9.3E-18 114.2 10.0 70 1-74 345-414 (458)
12 TIGR00928 purB adenylosuccinat 99.4 3E-13 6.5E-18 113.9 7.9 87 2-89 315-402 (435)
13 cd01598 PurB PurB_like adenylo 99.4 5.1E-13 1.1E-17 112.9 8.5 70 1-74 320-389 (425)
14 PF10397 ADSL_C: Adenylosuccin 99.4 1.2E-13 2.6E-18 92.2 2.8 52 42-94 1-52 (81)
15 cd01360 Adenylsuccinate_lyase_ 99.4 1.3E-12 2.8E-17 108.8 8.7 69 2-70 306-374 (387)
16 KOG2700|consensus 99.4 7.4E-13 1.6E-17 111.9 6.4 107 1-107 333-447 (481)
17 PRK06705 argininosuccinate lya 99.4 2.5E-12 5.4E-17 110.5 8.6 84 1-87 328-415 (502)
18 cd01595 Adenylsuccinate_lyase_ 99.3 2.9E-12 6.2E-17 106.3 8.1 70 1-70 306-375 (381)
19 cd01359 Argininosuccinate_lyas 99.3 3.4E-12 7.3E-17 107.4 8.5 84 2-88 302-386 (435)
20 cd01597 pCLME prokaryotic 3-ca 99.3 6.1E-12 1.3E-16 106.0 9.2 87 2-90 316-402 (437)
21 PLN02646 argininosuccinate lya 99.3 7.6E-12 1.7E-16 106.9 8.8 82 2-86 338-419 (474)
22 PRK12308 bifunctional arginino 99.3 2.5E-11 5.4E-16 106.1 9.2 84 3-89 325-408 (614)
23 TIGR00838 argH argininosuccina 99.2 6.6E-11 1.4E-15 100.3 8.9 86 2-90 322-407 (455)
24 PRK00855 argininosuccinate lya 99.2 1.5E-10 3.2E-15 98.4 8.8 82 2-86 326-407 (459)
25 PRK04833 argininosuccinate lya 99.1 4.4E-10 9.6E-15 95.6 8.4 79 5-86 327-405 (455)
26 PRK02186 argininosuccinate lya 99.1 4.8E-10 1E-14 101.6 8.3 82 2-86 732-814 (887)
27 TIGR00979 fumC_II fumarate hyd 98.9 1.8E-09 3.8E-14 92.1 5.9 75 3-89 364-438 (458)
28 PLN00134 fumarate hydratase; P 98.9 1.8E-09 3.8E-14 92.1 5.7 75 3-89 359-433 (458)
29 PRK00485 fumC fumarate hydrata 98.8 1.3E-08 2.8E-13 86.9 5.8 74 2-87 366-439 (464)
30 cd01362 Fumarase_classII Class 98.7 2.2E-08 4.8E-13 85.3 6.3 74 3-88 363-436 (455)
31 PRK12273 aspA aspartate ammoni 98.6 1.1E-07 2.4E-12 81.4 7.0 77 1-89 363-443 (472)
32 cd01357 Aspartase Aspartase. T 98.6 6.9E-08 1.5E-12 82.2 5.2 77 1-89 356-436 (450)
33 TIGR00839 aspA aspartate ammon 98.6 1.6E-07 3.4E-12 80.5 7.1 76 1-88 359-438 (468)
34 PRK12425 fumarate hydratase; P 98.5 2.1E-07 4.5E-12 79.7 6.8 74 4-89 366-439 (464)
35 PRK13353 aspartate ammonia-lya 98.4 5.2E-07 1.1E-11 77.3 6.5 77 1-89 361-441 (473)
36 PRK14515 aspartate ammonia-lya 98.4 2.9E-07 6.4E-12 79.1 4.7 76 2-89 363-447 (479)
37 cd01596 Aspartase_like asparta 98.4 5.3E-07 1.2E-11 76.9 6.1 76 2-89 357-436 (450)
38 COG0015 PurB Adenylosuccinate 97.0 0.00027 5.8E-09 60.6 1.5 40 79-118 316-356 (438)
39 COG0165 ArgH Argininosuccinate 96.5 0.026 5.7E-07 48.8 9.5 78 6-86 329-406 (459)
40 PF08328 ASL_C: Adenylosuccina 95.9 0.032 7E-07 39.9 6.1 93 6-116 16-108 (115)
41 KOG2700|consensus 95.6 0.014 3E-07 50.4 3.6 42 75-116 330-372 (481)
42 PRK08470 adenylosuccinate lyas 94.0 0.043 9.3E-07 46.8 2.7 38 79-116 309-347 (442)
43 PRK07380 adenylosuccinate lyas 93.7 0.045 9.8E-07 46.6 2.4 37 79-115 309-346 (431)
44 PRK07492 adenylosuccinate lyas 93.5 0.059 1.3E-06 46.0 2.7 39 78-116 311-350 (435)
45 PRK08937 adenylosuccinate lyas 93.4 0.068 1.5E-06 40.7 2.7 37 80-116 107-144 (216)
46 COG0114 FumC Fumarase [Energy 92.2 0.26 5.7E-06 42.3 4.8 90 5-111 368-458 (462)
47 PRK09053 3-carboxy-cis,cis-muc 90.4 0.25 5.5E-06 42.2 3.0 36 80-115 326-362 (452)
48 KOG1316|consensus 89.8 0.75 1.6E-05 39.2 5.2 73 5-80 331-403 (464)
49 cd03302 Adenylsuccinate_lyase_ 89.2 0.35 7.7E-06 41.2 3.0 37 80-116 322-359 (436)
50 PRK09285 adenylosuccinate lyas 89.2 0.42 9E-06 41.2 3.4 35 79-114 343-378 (456)
51 cd01360 Adenylsuccinate_lyase_ 89.1 0.37 8E-06 40.4 3.0 36 80-115 307-343 (387)
52 cd01598 PurB PurB_like adenylo 88.9 0.42 9.2E-06 40.8 3.3 34 82-115 323-357 (425)
53 cd01595 Adenylsuccinate_lyase_ 88.9 0.39 8.5E-06 40.0 3.0 37 80-116 308-345 (381)
54 PRK06389 argininosuccinate lya 88.9 2.6 5.6E-05 36.4 8.0 68 6-77 321-388 (434)
55 PRK08540 adenylosuccinate lyas 88.2 0.35 7.6E-06 41.3 2.3 36 80-115 322-358 (449)
56 PLN02848 adenylosuccinate lyas 87.9 0.49 1.1E-05 40.8 3.0 35 82-116 348-383 (458)
57 TIGR00928 purB adenylosuccinat 87.3 0.54 1.2E-05 39.9 2.9 36 80-115 316-352 (435)
58 cd01359 Argininosuccinate_lyas 86.3 0.65 1.4E-05 39.3 2.8 36 79-114 302-338 (435)
59 cd01357 Aspartase Aspartase. T 85.7 2 4.4E-05 36.8 5.6 39 78-116 356-399 (450)
60 PLN02646 argininosuccinate lya 83.5 0.93 2E-05 39.2 2.6 38 78-115 337-375 (474)
61 cd01597 pCLME prokaryotic 3-ca 83.5 1 2.3E-05 38.1 2.9 36 80-115 317-353 (437)
62 PLN00134 fumarate hydratase; P 81.4 5.1 0.00011 34.5 6.3 37 80-116 359-396 (458)
63 PRK06390 adenylosuccinate lyas 80.9 1.6 3.5E-05 37.3 3.1 37 79-115 321-358 (451)
64 PRK02186 argininosuccinate lya 79.6 1.4 3E-05 40.7 2.4 37 78-114 731-768 (887)
65 PRK12308 bifunctional arginino 79.4 1.6 3.6E-05 38.6 2.7 34 80-113 325-358 (614)
66 TIGR00979 fumC_II fumarate hyd 78.7 1.9 4.1E-05 37.2 2.8 36 80-115 364-400 (458)
67 PRK00855 argininosuccinate lya 77.8 2.2 4.7E-05 36.6 2.9 35 80-114 327-362 (459)
68 PRK06705 argininosuccinate lya 75.7 2.7 5.8E-05 36.7 2.9 33 83-115 333-369 (502)
69 PRK12273 aspA aspartate ammoni 75.4 8.3 0.00018 33.3 5.9 32 84-115 372-405 (472)
70 TIGR00838 argH argininosuccina 74.7 2.7 5.7E-05 36.0 2.7 34 80-113 323-356 (455)
71 PRK04833 argininosuccinate lya 74.1 3.1 6.7E-05 35.7 2.9 33 81-113 326-358 (455)
72 PRK12425 fumarate hydratase; P 73.1 10 0.00022 32.8 5.8 34 82-115 367-401 (464)
73 cd01596 Aspartase_like asparta 73.0 3.6 7.8E-05 35.4 3.1 35 82-116 364-399 (450)
74 cd01362 Fumarase_classII Class 71.7 3.2 7E-05 35.7 2.5 34 80-113 363-396 (455)
75 PRK00485 fumC fumarate hydrata 69.3 3.8 8.2E-05 35.3 2.4 36 79-114 366-402 (464)
76 TIGR00839 aspA aspartate ammon 68.0 11 0.00025 32.5 5.1 29 87-115 372-401 (468)
77 KOG1316|consensus 65.3 5.8 0.00013 33.9 2.6 41 78-118 327-368 (464)
78 PRK13353 aspartate ammonia-lya 61.7 21 0.00046 30.9 5.5 37 79-115 362-403 (473)
79 COG1027 AspA Aspartate ammonia 56.8 20 0.00043 31.2 4.4 67 11-89 376-442 (471)
80 PF03861 ANTAR: ANTAR domain; 51.5 24 0.00052 21.3 3.1 22 54-75 23-44 (56)
81 PRK05975 3-carboxy-cis,cis-muc 50.7 6.2 0.00013 32.8 0.5 33 76-108 317-349 (351)
82 COG0165 ArgH Argininosuccinate 50.2 14 0.00031 32.2 2.6 35 79-113 325-359 (459)
83 PF14698 ASL_C2: Argininosucci 47.6 35 0.00076 21.8 3.6 38 47-85 4-41 (70)
84 PRK14515 aspartate ammonia-lya 44.8 27 0.00058 30.5 3.5 32 85-116 377-410 (479)
85 PLN02150 terpene synthase/cycl 44.4 58 0.0013 22.1 4.5 65 53-117 13-89 (96)
86 PF14748 P5CR_dimer: Pyrroline 42.6 42 0.0009 23.0 3.6 29 45-73 22-50 (107)
87 PRK07634 pyrroline-5-carboxyla 40.5 1.1E+02 0.0024 23.1 6.0 47 28-74 161-212 (245)
88 PTZ00431 pyrroline carboxylate 35.1 1.4E+02 0.003 23.2 5.9 47 27-73 151-202 (260)
89 TIGR02426 protocat_pcaB 3-carb 34.7 22 0.00047 29.3 1.3 29 76-104 310-338 (338)
90 COG0345 ProC Pyrroline-5-carbo 30.0 78 0.0017 25.6 3.7 49 25-73 153-206 (266)
91 TIGR00112 proC pyrroline-5-car 25.3 1.1E+02 0.0023 23.7 3.7 47 27-73 138-189 (245)
92 PRK12491 pyrroline-5-carboxyla 25.2 1.1E+02 0.0023 24.3 3.7 47 27-73 158-209 (272)
93 COG3707 AmiR Response regulato 24.6 68 0.0015 25.0 2.4 48 25-74 128-175 (194)
94 PF10415 FumaraseC_C: Fumarase 24.0 31 0.00066 21.2 0.3 27 64-91 10-36 (55)
95 cd01334 Lyase_I Lyase class I 21.9 55 0.0012 26.5 1.5 32 76-107 294-325 (325)
96 COG0114 FumC Fumarase [Energy 21.1 99 0.0022 27.0 2.9 73 46-121 328-408 (462)
97 PF02861 Clp_N: Clp amino term 20.9 1.3E+02 0.0027 17.0 2.6 25 19-43 29-53 (53)
98 TIGR02610 PHA_gran_rgn putativ 20.5 54 0.0012 22.2 1.0 20 57-76 10-29 (91)
No 1
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=99.82 E-value=1.7e-20 Score=158.52 Aligned_cols=108 Identities=29% Similarity=0.421 Sum_probs=95.1
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+||+.||++|.+++++|.++..+++||+|||++|++|++.++|+|+||++|++|+++|+|||+||++|++.++.++++++
T Consensus 315 ver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~ 394 (438)
T COG0015 315 VERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGK 394 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHhhhcCCccCHH
Q psy14321 81 LTLSESFLTTDCLLITLQNVLKGLVVYPK 109 (124)
Q Consensus 81 ~~l~ea~l~~~~~l~~~~~v~~~l~v~~~ 109 (124)
..+ +.++.++.+.++++.=..--.++|.
T Consensus 395 ~~~-~~~l~~~~v~~~~~~~~~~~~~dp~ 422 (438)
T COG0015 395 EFL-ELLLADERVTKYLSEEELLELLDPA 422 (438)
T ss_pred chH-HHhccchhhhccCcHHHHHHcCCHH
Confidence 774 6667787777766543333333443
No 2
>PRK07492 adenylosuccinate lyase; Provisional
Probab=99.74 E-value=5.9e-18 Score=142.87 Aligned_cols=94 Identities=18% Similarity=0.304 Sum_probs=86.3
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
.||..+|+++.++++++..+..+++||+||++||++|++.++|+++||.++++|+++|+||++||++|++++++++++++
T Consensus 311 ~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~r~~Ah~~V~~~~~~a~~~~~ 390 (435)
T PRK07492 311 VERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSREDAYRLVQRNAMKVWEQGG 390 (435)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999999999999999999999999999999999899999999999999999999887
Q ss_pred cchhhhhhhHHHHHH
Q psy14321 81 LTLSESFLTTDCLLI 95 (124)
Q Consensus 81 ~~l~ea~l~~~~~l~ 95 (124)
++.|.+..++.+-.
T Consensus 391 -~l~e~l~~~~~~~~ 404 (435)
T PRK07492 391 -DFLEELKADPEVRA 404 (435)
T ss_pred -CHHHHHhCCHHhHh
Confidence 56687666554433
No 3
>PRK07380 adenylosuccinate lyase; Provisional
Probab=99.73 E-value=1.2e-17 Score=140.90 Aligned_cols=92 Identities=13% Similarity=0.309 Sum_probs=85.4
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc-CC
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP-HR 79 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~-~~ 79 (124)
+||..+|+++.++++++..+..+++||+||++||++|++.++|+++||.++++|+++|+||++||++|+++++++++ ++
T Consensus 308 ~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~r~~Ah~~V~~~~~~a~~~~~ 387 (431)
T PRK07380 308 VERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAYRLVQKNAHTAWNTEG 387 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999999999999999999999999999999899999999999999999999 88
Q ss_pred ccchhhhhhhHHHH
Q psy14321 80 RLTLSESFLTTDCL 93 (124)
Q Consensus 80 ~~~l~ea~l~~~~~ 93 (124)
+ ++.|.+..++.+
T Consensus 388 ~-~l~e~l~~~~~~ 400 (431)
T PRK07380 388 G-NFRANLEADPEV 400 (431)
T ss_pred C-CHHHHHHcChHh
Confidence 6 677886665544
No 4
>PRK08470 adenylosuccinate lyase; Provisional
Probab=99.72 E-value=2.1e-17 Score=139.63 Aligned_cols=93 Identities=23% Similarity=0.457 Sum_probs=84.3
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccC--
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPH-- 78 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~-- 78 (124)
.||..+|++|.++++++..+..+++||+||++||++|++.++|+++||.++++|+++|+||++||++|++++++++++
T Consensus 308 ~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V~~~~~~a~~~~~ 387 (442)
T PRK08470 308 VERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWEDLQ 387 (442)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999999999999999999999999999999999998999999999999999999998
Q ss_pred -Cccc--------hhhhhhhHHHH
Q psy14321 79 -RRLT--------LSESFLTTDCL 93 (124)
Q Consensus 79 -~~~~--------l~ea~l~~~~~ 93 (124)
|+++ +.|.+..++.+
T Consensus 388 ~~~~~~~~~~~~~l~~~l~~~~~~ 411 (442)
T PRK08470 388 QGKAAINEKGESLFLQALLNDEDL 411 (442)
T ss_pred cCCCccccccHHHHHHHHhcCHHh
Confidence 8751 66765554433
No 5
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=99.65 E-value=1.8e-16 Score=133.67 Aligned_cols=89 Identities=58% Similarity=0.840 Sum_probs=83.0
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccC--
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPH-- 78 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~-- 78 (124)
+||..+|+++.++++++..+..+++||+||++||++|++.++|+++||+++++|+++|+||++||++|++++++++++
T Consensus 320 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~g~~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~~~~ 399 (436)
T cd03302 320 NRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAAVVK 399 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999999999999999999999999999999998999999999999999999998
Q ss_pred ----CccchhhhhhhH
Q psy14321 79 ----RRLTLSESFLTT 90 (124)
Q Consensus 79 ----~~~~l~ea~l~~ 90 (124)
++ ++.|.+..+
T Consensus 400 ~~~~~~-~~~~~l~~~ 414 (436)
T cd03302 400 QEGGDN-DLIERIKND 414 (436)
T ss_pred cccCCC-CHHHHHhcC
Confidence 76 666875543
No 6
>PRK09285 adenylosuccinate lyase; Provisional
Probab=99.62 E-value=1.6e-15 Score=128.82 Aligned_cols=86 Identities=16% Similarity=0.037 Sum_probs=79.8
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+||.. |+++.++++++..+..+++||+||++||++|++.++| ++||++++.|++ +||++||++|+++++.+++++.
T Consensus 342 ~e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl~~~~~-~~sE~~~~~l~~--~gr~~A~~~v~~~~~~~~~~~~ 417 (456)
T PRK09285 342 VLRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDLDANWE-VLAEPIQTVMRR--YGIENPYEKLKELTRGKRITAE 417 (456)
T ss_pred hhcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCc-chHHHHHHHHHH--hChHhHHHHHHHHHHHHHhccC
Confidence 48998 9999999999999999999999999999999999999 999999999997 9999999999999999999887
Q ss_pred cchhhh---hhhHH
Q psy14321 81 LTLSES---FLTTD 91 (124)
Q Consensus 81 ~~l~ea---~l~~~ 91 (124)
++.|. +..++
T Consensus 418 -~~~e~~~~l~~~~ 430 (456)
T PRK09285 418 -ALREFIDGLDLPE 430 (456)
T ss_pred -CHHHHHHHhcCCH
Confidence 56677 65544
No 7
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.59 E-value=2.2e-15 Score=127.52 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=81.4
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|++|.++++++..+..+++||+||++||++|++.+.|+++||++|+.|++ .+||++||++|+++++.+.++|+
T Consensus 325 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~l~~s~~~~~ae~~~~~La~-~lgr~~Ah~iV~~~~~~a~~~g~- 402 (452)
T PRK09053 325 EWDTLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALAD-RIGRLDAHHLVEQASKRAVAEGR- 402 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHCC-
Confidence 6889999999999999999999999999999999999999999999999999999 59999999999999999999887
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.|.+..+
T Consensus 403 ~~~~~~~~~ 411 (452)
T PRK09053 403 HLRDVLAED 411 (452)
T ss_pred CHHHHHHhC
Confidence 666775554
No 8
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.57 E-value=1.3e-14 Score=111.18 Aligned_cols=88 Identities=34% Similarity=0.615 Sum_probs=81.6
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|++|..+.+++..+..+++||+||++||++|++.+.|++.+|.++++|++.|+||++||+.|+++++.+.+++.
T Consensus 106 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~~~~~~g~- 184 (216)
T PRK08937 106 ERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQK- 184 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 6889999999999999999999999999999999999999999999999999998799999999999999999998886
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.|.+..+
T Consensus 185 ~~~~~~~~~ 193 (216)
T PRK08937 185 DLRELLEAD 193 (216)
T ss_pred CHHHHHHhC
Confidence 566764544
No 9
>PRK06390 adenylosuccinate lyase; Provisional
Probab=99.53 E-value=2.2e-14 Score=121.50 Aligned_cols=88 Identities=24% Similarity=0.373 Sum_probs=81.1
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
.||..+|+.+.+++.++..+..+++||+||++||++|++. +|.++||.+++.|++.|+||++||++|+++++++.++|+
T Consensus 320 ~e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~-~~~~~se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~g~ 398 (451)
T PRK06390 320 LERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLES-DDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSNGK 398 (451)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhc-cchhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3788899999999999999999999999999999999999 999999999999999889999999999999999999886
Q ss_pred cchhhhhhhH
Q psy14321 81 LTLSESFLTT 90 (124)
Q Consensus 81 ~~l~ea~l~~ 90 (124)
++.|.+...
T Consensus 399 -~l~~~~~~~ 407 (451)
T PRK06390 399 -SLKSSLIEA 407 (451)
T ss_pred -CHHHHHHhC
Confidence 576764443
No 10
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=99.51 E-value=6.9e-14 Score=118.24 Aligned_cols=89 Identities=30% Similarity=0.452 Sum_probs=82.3
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+||..+|+++.++++++..+..+++||+||++||++|++.++|++.||.+++.|++.|+|+++||++|.+++..+.++|+
T Consensus 320 ~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~g~ 399 (449)
T PRK08540 320 CERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHEEGR 399 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 37999999999999999999999999999999999999999999999999999999899999999999999999998886
Q ss_pred cchhhhhhhH
Q psy14321 81 LTLSESFLTT 90 (124)
Q Consensus 81 ~~l~ea~l~~ 90 (124)
++.|.+...
T Consensus 400 -~l~e~~~~~ 408 (449)
T PRK08540 400 -HLKEVLLED 408 (449)
T ss_pred -CHHHHHHhC
Confidence 566764443
No 11
>PLN02848 adenylosuccinate lyase
Probab=99.45 E-value=4.3e-13 Score=114.23 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=67.2
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNP 74 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~ 74 (124)
+||.. |++|.++++++..+..+++||+||++||++|++.+.|+ +||.+++.|++ +||++||++|+++++.
T Consensus 345 ~e~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~~~~~-~sE~~~~~l~~--~G~~~A~e~v~~~~~~ 414 (458)
T PLN02848 345 VLRNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQTWEV-LAEPIQTVMRR--YGVPEPYEKLKELTRG 414 (458)
T ss_pred hhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHccchh-HHHHHHHHHHH--hChHHHHHHHHHHHHH
Confidence 48888 99999999999999999999999999999999999999 99999999997 8999999999999965
No 12
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=99.44 E-value=3e-13 Score=113.91 Aligned_cols=87 Identities=30% Similarity=0.439 Sum_probs=80.2
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc-CCc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP-HRR 80 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~-~~~ 80 (124)
||.++|+++.++.+++..+..+++||+||++||++|++.+.|++.++.+++.|++.|+||++||++|++++..+.+ ++.
T Consensus 315 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~a~~la~~L~~~g~g~~~Ah~~v~~~~~~a~~~~~~ 394 (435)
T TIGR00928 315 ERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAAEVDEP 394 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHhHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHcccc
Confidence 6778999999999999999999999999999999999999999999999999998899999999999999999988 775
Q ss_pred cchhhhhhh
Q psy14321 81 LTLSESFLT 89 (124)
Q Consensus 81 ~~l~ea~l~ 89 (124)
++.+.+..
T Consensus 395 -~l~~~~~~ 402 (435)
T TIGR00928 395 -DLLEFLLA 402 (435)
T ss_pred -cHHHHHhh
Confidence 56565444
No 13
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=99.42 E-value=5.1e-13 Score=112.86 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=67.0
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNP 74 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~ 74 (124)
+||.. |+++.+++++++.+..+++||+||++||++|++.++| ++||.+|+.|++ +||++||++|+++++-
T Consensus 320 ~e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~-i~sE~~~~~l~~--~gr~~Ah~~V~~~~~~ 389 (425)
T cd01598 320 VLRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWE-VLAEPIQTVMRR--YGIPNPYEKLKDLTRG 389 (425)
T ss_pred hhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcC-HHHHHHHHHHHh--cChHhHHHHHHHHhCC
Confidence 38888 9999999999999999999999999999999999999 999999999996 9999999999999973
No 14
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=99.40 E-value=1.2e-13 Score=92.18 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhhhhhhHHHHH
Q psy14321 42 LPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSESFLTTDCLL 94 (124)
Q Consensus 42 ~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~ea~l~~~~~l 94 (124)
+|+|+||++|++|+++|+||++||++|++++++|++++. +|.|++..+..+-
T Consensus 1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~-~l~e~l~~d~~i~ 52 (81)
T PF10397_consen 1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWENGR-DLREVLLADPEIA 52 (81)
T ss_dssp TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS--HHHHHCTTHHHH
T ss_pred CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHCC-CHHHHHHCCHHHH
Confidence 699999999999999889999999999999999999987 6779877666664
No 15
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=99.39 E-value=1.3e-12 Score=108.83 Aligned_cols=69 Identities=26% Similarity=0.514 Sum_probs=67.7
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRG 70 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~ 70 (124)
||..+|+++.++..++..+..++++|+||++||++|++.++|+++||.+++.|+++|+||.+||++|.+
T Consensus 306 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~~r~Ah~~V~~ 374 (387)
T cd01360 306 ERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIVQR 374 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999989999999999998
No 16
>KOG2700|consensus
Probab=99.38 E-value=7.4e-13 Score=111.95 Aligned_cols=107 Identities=45% Similarity=0.540 Sum_probs=87.8
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcc----c
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPL----F 76 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A----~ 76 (124)
++|..+|+.|..+++.|.+..++++||.|+|++|.+|+..+.|++.+|+++|+|+++|++|++||+.|+.++.++ .
T Consensus 333 ~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a~~~v~ 412 (481)
T KOG2700|consen 333 NRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVK 412 (481)
T ss_pred ccceechHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999988 6
Q ss_pred cCCccch----hhhhhhHHHHHHHHHhhhcCCccC
Q psy14321 77 PHRRLTL----SESFLTTDCLLITLQNVLKGLVVY 107 (124)
Q Consensus 77 ~~~~~~l----~ea~l~~~~~l~~~~~v~~~l~v~ 107 (124)
++++.+- .+......++-.-....++.+.+.
T Consensus 413 ~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~ 447 (481)
T KOG2700|consen 413 QEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFT 447 (481)
T ss_pred HhcCCcHHHHHhcccccccchHHHHHhhccchhcc
Confidence 6655311 012233445555566666644443
No 17
>PRK06705 argininosuccinate lyase; Provisional
Probab=99.36 E-value=2.5e-12 Score=110.52 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=77.8
Q ss_pred CccchHhHHHHHHHHH---HHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHc-CCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSESFLTTDCL---LITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKA-GGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~a---L~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~-~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|++|.+++.+ +..+..++++|+||++||++|+.. |+++|+.++..|+++ |+||.+||++|.++++.+.
T Consensus 328 ~q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~--g~~~At~la~~Lv~~~Gl~fr~Ah~iV~~~v~~a~ 405 (502)
T PRK06705 328 TEDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYK--HAITITDFADVLTKNYGIPFRHAHHAASVIANMSL 405 (502)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHhc--CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3788899999999999 999999999999999999999988 999999999999998 8999999999999999999
Q ss_pred cCCccchhhhh
Q psy14321 77 PHRRLTLSESF 87 (124)
Q Consensus 77 ~~~~~~l~ea~ 87 (124)
+.++ ++.+.+
T Consensus 406 ~~~~-~l~~~~ 415 (502)
T PRK06705 406 EQKK-ELHELC 415 (502)
T ss_pred HhCC-CHHHhh
Confidence 8887 555653
No 18
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=99.35 E-value=2.9e-12 Score=106.30 Aligned_cols=70 Identities=36% Similarity=0.562 Sum_probs=67.9
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRG 70 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~ 70 (124)
.||..+|+++.++.+++..+..+++||+||++||++|++.+.|+++||.+++.|+++|+||.+||++|++
T Consensus 306 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~~g~g~~~Ah~~v~~ 375 (381)
T cd01595 306 VERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999988999999999998
No 19
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=99.34 E-value=3.4e-12 Score=107.38 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=77.8
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHH-cCCCHHHHHHHHHHhcCccccCCc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK-AGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~-~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+|..+|+++.++..++..+..++++|+||++||++|++ +|+++++.+++.|++ +|+||.+||++|++++.++.++|+
T Consensus 302 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~l~~~l~~~~g~~~r~Ah~~v~~~~~~a~~~g~ 379 (435)
T cd01359 302 DKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAE--AGFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGK 379 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHh--cCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 68899999999999999999999999999999999997 999999999999998 799999999999999999998887
Q ss_pred cchhhhhh
Q psy14321 81 LTLSESFL 88 (124)
Q Consensus 81 ~~l~ea~l 88 (124)
++.|.+.
T Consensus 380 -~~~~~~~ 386 (435)
T cd01359 380 -DLSDLTL 386 (435)
T ss_pred -ChhhcCH
Confidence 4556533
No 20
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=99.33 E-value=6.1e-12 Score=105.98 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=80.2
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++..+.+++..+..+++||+||++||++|++.+.|+++||.+++.|++ ++|+.+||++|++++..+.++|.
T Consensus 316 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~-~i~~~~Ah~~v~~~~~~a~~~g~- 393 (437)
T cd01597 316 EWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAP-KLGRQEAHDLVYEACMRAVEEGR- 393 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhCC-
Confidence 5888999999999999999999999999999999999999999999999999998 79999999999999999998886
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.+.+...
T Consensus 394 ~~~~~~~~~ 402 (437)
T cd01597 394 PLREVLLED 402 (437)
T ss_pred CHHHHHHhC
Confidence 566765444
No 21
>PLN02646 argininosuccinate lyase
Probab=99.31 E-value=7.6e-12 Score=106.89 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=77.5
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|+++.++..++..+..++++|+||++||++|++ +|+++|+.++..|+++|+||.+||++|.+++..+.++|.
T Consensus 338 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~--~~~~~At~la~~Lv~~Gi~fr~Ah~iV~~~v~~a~~~g~- 414 (474)
T PLN02646 338 DKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLP--AGMLDATTLADYLVRKGVPFRETHHIVGAAVALAESKGC- 414 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 68899999999999999999999999999999999999 899999999999999899999999999999999998886
Q ss_pred chhhh
Q psy14321 82 TLSES 86 (124)
Q Consensus 82 ~l~ea 86 (124)
++.|.
T Consensus 415 ~l~~l 419 (474)
T PLN02646 415 ELSDL 419 (474)
T ss_pred CHHHH
Confidence 56565
No 22
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.25 E-value=2.5e-11 Score=106.13 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=77.3
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.++..++..+..+++||+||++||++| .++|+++|+.++..|+++|+|+.+||++|.++++.+.++|+ +
T Consensus 325 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~--~~~g~~~a~~la~~L~~~g~~~r~Ah~~v~~~v~~a~~~g~-~ 401 (614)
T PRK12308 325 KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEA--AKQGYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGC-A 401 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHH--HHcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-C
Confidence 77899999999999999999999999999999999 77899999999999999899999999999999999998887 4
Q ss_pred hhhhhhh
Q psy14321 83 LSESFLT 89 (124)
Q Consensus 83 l~ea~l~ 89 (124)
+.+....
T Consensus 402 l~~~~~~ 408 (614)
T PRK12308 402 LEELSLE 408 (614)
T ss_pred hhhCCHH
Confidence 6565443
No 23
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.20 E-value=6.6e-11 Score=100.35 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=78.5
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.++..++..+..+++||+||++||++| .+.|+++++.++..|+++|+|+.+||+.|.+++..+.++|.
T Consensus 322 ~~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~~--~~~~~~~at~la~~Lv~~g~~~r~Ah~~v~~~~~~a~~~g~- 398 (455)
T TIGR00838 322 DKEPLFDALKTVELSLEMATGMLDTITVNKERMEEA--ASAGFSNATELADYLVRKGVPFREAHHIVGELVATAIERGK- 398 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH--HHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 478899999999999999999999999999999999 66899999999999999899999999999999999998886
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.|.+...
T Consensus 399 ~l~~~~~~~ 407 (455)
T TIGR00838 399 GLEELTLEE 407 (455)
T ss_pred CHHHHHHHH
Confidence 566764443
No 24
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.15 E-value=1.5e-10 Score=98.37 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=76.5
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.++..++..+..+++||+||++||++|++ +|++.++.++..|+++|+|+.+||+.|.+++.++.++|.
T Consensus 326 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~at~la~~Lv~~gi~~r~Ah~~v~~~~~~a~~~g~- 402 (459)
T PRK00855 326 DKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAG--KGFSTATDLADYLVRKGVPFREAHEIVGKAVREAEERGV- 402 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 46779999999999999999999999999999999998 899999999999999899999999999999999999887
Q ss_pred chhhh
Q psy14321 82 TLSES 86 (124)
Q Consensus 82 ~l~ea 86 (124)
++.+.
T Consensus 403 ~~~~~ 407 (459)
T PRK00855 403 DLADL 407 (459)
T ss_pred CHHHH
Confidence 45564
No 25
>PRK04833 argininosuccinate lyase; Provisional
Probab=99.08 E-value=4.4e-10 Score=95.56 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=73.1
Q ss_pred hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchh
Q psy14321 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLS 84 (124)
Q Consensus 5 ~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~ 84 (124)
.+|+++..+..++..+..++++|+||++||++| .++|++.|+.++..|+++|+|+.+||++|.+++..+.+++. ++.
T Consensus 327 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~--~~~g~~~a~~~a~~L~~~g~~~r~Ah~~v~~~~~~a~~~~~-~~~ 403 (455)
T PRK04833 327 GLFDALDTWLDCLHMAALVLDGIQVKRPRCQEA--AQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGK-PLE 403 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeECHHHHHHH--HHccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-Chh
Confidence 589999999999999999999999999999999 77899999999999999899999999999999999998886 454
Q ss_pred hh
Q psy14321 85 ES 86 (124)
Q Consensus 85 ea 86 (124)
+.
T Consensus 404 ~~ 405 (455)
T PRK04833 404 DL 405 (455)
T ss_pred hc
Confidence 53
No 26
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.06 E-value=4.8e-10 Score=101.55 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=75.6
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHc-CCCHHHHHHHHHHhcCccccCCc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKA-GGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~-~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+|..+|+++.++..++..+..++++|+||++||++|++.+.+ +|+.++..|+++ |+||.+||++|.+++..+.+++.
T Consensus 732 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~--~at~la~~L~~~~g~~fr~Ah~~v~~~v~~~~~~~~ 809 (887)
T PRK02186 732 MNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGV--SATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGR 809 (887)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCcc--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 588999999999999999999999999999999999999888 899999999985 99999999999999999988874
Q ss_pred cchhhh
Q psy14321 81 LTLSES 86 (124)
Q Consensus 81 ~~l~ea 86 (124)
++.+.
T Consensus 810 -~~~~~ 814 (887)
T PRK02186 810 -SSADA 814 (887)
T ss_pred -cccch
Confidence 45454
No 27
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=98.92 E-value=1.8e-09 Score=92.12 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=64.8
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.++++++..+..+++||+||++||++|++.+.| ++.+|++ ++||++||++++ ++.+++. +
T Consensus 364 ~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~------~~t~La~-~lg~~~A~~~~~----~a~~~~~-~ 431 (458)
T TIGR00979 364 YNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLM------LVTALNP-HIGYDNAAKIAK----KAHKEGI-T 431 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCcc------HHHHhhh-ccCHHHHHHHHH----HHHHhCC-C
Confidence 88999999999999999999999999999999999999999 8899999 799999999544 5555665 5
Q ss_pred hhhhhhh
Q psy14321 83 LSESFLT 89 (124)
Q Consensus 83 l~ea~l~ 89 (124)
+.|++..
T Consensus 432 ~~e~~~~ 438 (458)
T TIGR00979 432 LKEAALE 438 (458)
T ss_pred HHHHHHH
Confidence 6566443
No 28
>PLN00134 fumarate hydratase; Provisional
Probab=98.91 E-value=1.8e-09 Score=92.10 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=65.9
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.++++++..+..+++||+||++||++|++.+.|++ ++|++ ++||++||+ ++++++++++ +
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~------~~La~-~ig~~~A~~----~~~~a~~~g~-~ 426 (458)
T PLN00134 359 YNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLV------TALNP-KIGYDKAAA----VAKKAHKEGT-T 426 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchH------HHhhh-ccCHHHHHH----HHHHHHHhCC-C
Confidence 7889999999999999999999999999999999999999998 89999 699999998 4555666676 5
Q ss_pred hhhhhhh
Q psy14321 83 LSESFLT 89 (124)
Q Consensus 83 l~ea~l~ 89 (124)
+.|+++.
T Consensus 427 l~e~~~~ 433 (458)
T PLN00134 427 LKEAALK 433 (458)
T ss_pred HHHHHHh
Confidence 6676554
No 29
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=98.75 E-value=1.3e-08 Score=86.86 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=64.2
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.+.++++..+..+++||+||++||++|++.+.| ++..|++ ++||++||++++ ++.++|.
T Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l~~~~~------~~t~La~-~lg~~~A~~~~~----~a~~~g~- 433 (464)
T PRK00485 366 AYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLM------LVTALNP-HIGYDKAAKIAK----KAHKEGL- 433 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCe------eHHHhcc-ccCHHHHHHHHH----HHHHcCC-
Confidence 688999999999999999999999999999999999999998 7899998 799999999444 5566665
Q ss_pred chhhhh
Q psy14321 82 TLSESF 87 (124)
Q Consensus 82 ~l~ea~ 87 (124)
++.|.+
T Consensus 434 ~l~~~~ 439 (464)
T PRK00485 434 TLKEAA 439 (464)
T ss_pred CHHHHH
Confidence 455653
No 30
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=98.72 E-value=2.2e-08 Score=85.30 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=64.5
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.+.++++..+..+++||+||++||++|++.+.|+ ++.|++ ++||++||++++ .+.+++. +
T Consensus 363 ~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l~~~~~~------~~~La~-~ig~~~A~~l~~----~a~~~~~-~ 430 (455)
T cd01362 363 YNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLML------VTALNP-HIGYDKAAKIAK----KAHKEGL-T 430 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcchh------HHHhcc-ccCHHHHHHHHH----HHHHcCC-C
Confidence 889999999999999999999999999999999999999998 799998 799999999854 4455565 5
Q ss_pred hhhhhh
Q psy14321 83 LSESFL 88 (124)
Q Consensus 83 l~ea~l 88 (124)
+.|++.
T Consensus 431 l~~~~~ 436 (455)
T cd01362 431 LKEAAL 436 (455)
T ss_pred HHHHHH
Confidence 666543
No 31
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=98.60 E-value=1.1e-07 Score=81.43 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=64.2
Q ss_pred CccchHhHH---HHHHHHHHHHHH-hhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSES---FLTTDCLLITLQ-NVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~---~~~~~~aL~~~~-~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|++ +..+..++..+. .+++||+||++||++|++.+.|++ ..|++ .+||+.||+++++ |.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~------t~LA~-~L~~~~a~~lv~~----a~ 431 (472)
T PRK12273 363 MEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIV------TALNP-YIGYENAAEIAKE----AL 431 (472)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCchH------HHHHH-HHHHHHHHHHHHH----HH
Confidence 378889999 999999999999 599999999999999999999987 78998 4999988888664 45
Q ss_pred cCCccchhhhhhh
Q psy14321 77 PHRRLTLSESFLT 89 (124)
Q Consensus 77 ~~~~~~l~ea~l~ 89 (124)
+++. ++.|.+..
T Consensus 432 ~~g~-~l~~~~~~ 443 (472)
T PRK12273 432 ETGK-SVRELVLE 443 (472)
T ss_pred HhCC-CHHHHHhh
Confidence 5565 56565433
No 32
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=98.58 E-value=6.9e-08 Score=82.17 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=64.6
Q ss_pred CccchHhHHHH---HHHHHHHHH-HhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSESFL---TTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~~~---~~~~aL~~~-~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|+++. ++.+++..+ ..+++||+||++||++|++.+.|++ ..|++. +||+.||+++++ +.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~------t~La~~-lg~~~a~~~~~~----a~ 424 (450)
T cd01357 356 FEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIV------TALNPY-IGYEAAAEIAKE----AL 424 (450)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchH------HHHHHH-HHHHHHHHHHHH----HH
Confidence 37889999999 999999999 5999999999999999999999987 889984 999998886664 55
Q ss_pred cCCccchhhhhhh
Q psy14321 77 PHRRLTLSESFLT 89 (124)
Q Consensus 77 ~~~~~~l~ea~l~ 89 (124)
+++. ++.|.+..
T Consensus 425 ~~g~-~l~e~~~~ 436 (450)
T cd01357 425 ETGR-SVRELVLE 436 (450)
T ss_pred HhCC-CHHHHHHh
Confidence 6665 56666443
No 33
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=98.57 E-value=1.6e-07 Score=80.49 Aligned_cols=76 Identities=7% Similarity=0.009 Sum_probs=62.6
Q ss_pred CccchHhHH----HHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSES----FLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~----~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|++ +.++++++..+..+++||+||++||++|++.+.|++ +.|++. +||+.||+++++ +.
T Consensus 359 ~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~~~~~------~~La~~-~g~~~a~~~~~~----a~ 427 (468)
T TIGR00839 359 MEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIV------TYLNPF-IGHHNGDIVGKI----CA 427 (468)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhHHHH------HHHhhH-hhHHHHHHHHHH----HH
Confidence 478889999 888888888999999999999999999999888876 778885 899999988664 45
Q ss_pred cCCccchhhhhh
Q psy14321 77 PHRRLTLSESFL 88 (124)
Q Consensus 77 ~~~~~~l~ea~l 88 (124)
++|. ++.|...
T Consensus 428 ~~g~-~l~e~~~ 438 (468)
T TIGR00839 428 ETGK-SVREVVL 438 (468)
T ss_pred HhCC-CHHHHHH
Confidence 5565 5667543
No 34
>PRK12425 fumarate hydratase; Provisional
Probab=98.53 E-value=2.1e-07 Score=79.67 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=62.3
Q ss_pred chHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccch
Q psy14321 4 LTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTL 83 (124)
Q Consensus 4 ~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l 83 (124)
..+|++..++++++..+..+++||+||++||++|++. |++ ++.+|++ ++||++||+++ ++|.+++. ++
T Consensus 366 ~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~--~~~----~at~L~~-~ig~~~A~~ia----~~a~~~g~-~l 433 (464)
T PRK12425 366 NLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLER--GLM----LVTALNP-HIGYDKAAEIA----KKAYAEGT-TL 433 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc--ccH----HHHHhhh-ccCHHHHHHHH----HHHHHhCC-CH
Confidence 5789999999999999999999999999999999998 665 7788898 69999999766 45566665 56
Q ss_pred hhhhhh
Q psy14321 84 SESFLT 89 (124)
Q Consensus 84 ~ea~l~ 89 (124)
.|+++.
T Consensus 434 ~e~~~~ 439 (464)
T PRK12425 434 REAALA 439 (464)
T ss_pred HHHHHh
Confidence 676443
No 35
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=98.42 E-value=5.2e-07 Score=77.33 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=64.1
Q ss_pred CccchHhHHHHHH---H-HHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSESFLTT---D-CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~~~~~---~-~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|+.+..+ . ++...+..+++||+||++||++|++.+.|++ ..|++. + ||++|.++++.|.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~~~~~l~------t~La~~-L----gh~~v~~~~~~a~ 429 (473)
T PRK13353 361 MEPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIA------TALNPH-I----GYEAAARIAKEAI 429 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchH------HHHHHH-H----HHHHHHHHHHHHH
Confidence 3788999999988 5 5555666899999999999999999999987 677874 6 5999999999999
Q ss_pred cCCccchhhhhhh
Q psy14321 77 PHRRLTLSESFLT 89 (124)
Q Consensus 77 ~~~~~~l~ea~l~ 89 (124)
++|. ++.|.+..
T Consensus 430 ~~g~-~l~e~~~~ 441 (473)
T PRK13353 430 ATGR-SVRELALE 441 (473)
T ss_pred HhCC-CHHHHHhh
Confidence 8886 67676544
No 36
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=98.41 E-value=2.9e-07 Score=79.10 Aligned_cols=76 Identities=7% Similarity=0.079 Sum_probs=59.4
Q ss_pred ccchH-h----HHHH---HHHHHHHH-HHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q psy14321 2 KRLTL-S----ESFL---TTDCLLIT-LQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGAL 72 (124)
Q Consensus 2 Ew~~l-P----e~~~---~~~~aL~~-~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a 72 (124)
||..+ | +++. ++..++.. +.++++||+||++||++|++.+.|++ .+|++ ++||+. |.+++
T Consensus 363 e~n~~~p~i~~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~l~~s~~l~------t~La~-~iG~~~----v~~~a 431 (479)
T PRK14515 363 ELNVMEPVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGII------TAVNP-HIGYEA----AARVA 431 (479)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCccHH------HHhcc-hhcHHH----HHHHH
Confidence 56666 6 6666 89999944 55599999999999999999999988 89998 799766 55555
Q ss_pred CccccCCccchhhhhhh
Q psy14321 73 NPLFPHRRLTLSESFLT 89 (124)
Q Consensus 73 ~~A~~~~~~~l~ea~l~ 89 (124)
++|.+++. ++.|++..
T Consensus 432 ~~A~~~g~-~l~e~~~~ 447 (479)
T PRK14515 432 KEAIATGQ-SVRELCVK 447 (479)
T ss_pred HHHHHhCC-CHHHHHHh
Confidence 66677776 67676444
No 37
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=98.40 E-value=5.3e-07 Score=76.88 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=64.1
Q ss_pred ccc----hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc
Q psy14321 2 KRL----TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP 77 (124)
Q Consensus 2 Ew~----~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~ 77 (124)
||. .+|+++.+.++++..+..+++||+||++||++|++.+.|++ +.|++. +||+.||+++++ +.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------t~LA~~-lg~~~a~~~v~~----a~~ 425 (450)
T cd01596 357 KPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLV------TALNPH-IGYEKAAEIAKE----ALK 425 (450)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchH------HHHhHH-HhHHHHHHHHHH----HHH
Confidence 677 89999999999999999999999999999999999999987 788984 999999997775 445
Q ss_pred CCccchhhhhhh
Q psy14321 78 HRRLTLSESFLT 89 (124)
Q Consensus 78 ~~~~~l~ea~l~ 89 (124)
+|. ++.+.+..
T Consensus 426 ~g~-~l~~~~~~ 436 (450)
T cd01596 426 EGR-TLREAALE 436 (450)
T ss_pred cCC-CHHHHHHH
Confidence 554 56565443
No 38
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00027 Score=60.57 Aligned_cols=40 Identities=38% Similarity=0.587 Sum_probs=36.7
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhhhh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLR 118 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~~~ 118 (124)
+|..||++|...|.+|+.+.++++||.|||++|.+ ++...
T Consensus 316 er~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~ 356 (438)
T COG0015 316 ERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTL 356 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhcc
Confidence 57789999999999999999999999999999999 77554
No 39
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=96.47 E-value=0.026 Score=48.79 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhh
Q psy14321 6 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSE 85 (124)
Q Consensus 6 lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~e 85 (124)
+=+++-.+..++..+..++++|+||+++|++.. ..|+..+--+--.|+.+|++=-+||++|-+++..+.+.+. +|++
T Consensus 329 lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a~--~~gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~-~l~~ 405 (459)
T COG0165 329 LFDSVDTLEDSLRVLAGMVSGLTVNKERMREAA--EAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGK-DLAD 405 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHh--hcccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-CHHh
Confidence 346777888899999999999999999999975 5677777777788888899999999999999999999988 4656
Q ss_pred h
Q psy14321 86 S 86 (124)
Q Consensus 86 a 86 (124)
.
T Consensus 406 l 406 (459)
T COG0165 406 L 406 (459)
T ss_pred c
Confidence 4
No 40
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=95.90 E-value=0.032 Score=39.94 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=66.2
Q ss_pred HhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhh
Q psy14321 6 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSE 85 (124)
Q Consensus 6 lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~e 85 (124)
+.-+|.++--+...+..-+++|.||+++|.++|+.+-. +.||++=..|-. .|=+++||.++++++-. . +
T Consensus 16 iGva~~~sliA~~s~lkGl~Kl~vn~~~l~~dL~~nWe-VlaEpIQTvmRr--~g~~~pYE~LK~lTRg~----~--i-- 84 (115)
T PF08328_consen 16 IGVAFGHSLIAYKSLLKGLGKLEVNEERLAEDLDENWE-VLAEPIQTVMRR--YGIPNPYEKLKELTRGK----K--I-- 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTEEE-HHHHHHHHCT-GG-GGHHHHHHHHHH--TT-SSHHHHHHHHHTTS----------
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHCHH-HHHHHHHHHHHH--cCCCCHHHHHHHHHcCC----C--C--
Confidence 34566777777888888999999999999999999886 799999988887 56688999999998632 1 1
Q ss_pred hhhhHHHHHHHHHhhhcCCccCHHHHhhhhh
Q psy14321 86 SFLTTDCLLITLQNVLKGLVVYPKVIQRLNT 116 (124)
Q Consensus 86 a~l~~~~~l~~~~~v~~~l~v~~~~m~~~~~ 116 (124)
.. .-+....++|.|.++.-++++.
T Consensus 85 ---t~----~~l~~fI~~L~ip~~~k~~L~~ 108 (115)
T PF08328_consen 85 ---TK----EDLREFIESLDIPEEAKARLLA 108 (115)
T ss_dssp ----H----HHHHHHHHTSSS-HHHHHHHHH
T ss_pred ---CH----HHHHHHHHhCCCCHHHHHHHHh
Confidence 11 1244566777777776555543
No 41
>KOG2700|consensus
Probab=95.55 E-value=0.014 Score=50.36 Aligned_cols=42 Identities=52% Similarity=0.780 Sum_probs=37.1
Q ss_pred cccCCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 75 LFPHRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 75 A~~~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
..+..+..+|++|+..|..|+...+|..|++|||++|++ +..
T Consensus 330 dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~ 372 (481)
T KOG2700|consen 330 DSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRD 372 (481)
T ss_pred cccccceechHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHh
Confidence 344578899999999999999999999999999999998 543
No 42
>PRK08470 adenylosuccinate lyase; Provisional
Probab=93.95 E-value=0.043 Score=46.84 Aligned_cols=38 Identities=45% Similarity=0.789 Sum_probs=34.6
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
++..+++++...+.++..+..+++||.||||+|++ ++.
T Consensus 309 e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~ 347 (442)
T PRK08470 309 ERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNL 347 (442)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 46678999999999999999999999999999999 753
No 43
>PRK07380 adenylosuccinate lyase; Provisional
Probab=93.73 E-value=0.045 Score=46.64 Aligned_cols=37 Identities=27% Similarity=0.594 Sum_probs=34.2
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+|..+++++...+.++..+.++++||.|||++|++ +.
T Consensus 309 e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~ 346 (431)
T PRK07380 309 ERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMN 346 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 46689999999999999999999999999999999 75
No 44
>PRK07492 adenylosuccinate lyase; Provisional
Probab=93.51 E-value=0.059 Score=45.98 Aligned_cols=39 Identities=33% Similarity=0.495 Sum_probs=35.0
Q ss_pred CCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 78 ~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
.+|..+|+++...+.++..+..+++||.|||++|++ ++.
T Consensus 311 ~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~ 350 (435)
T PRK07492 311 VERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNK 350 (435)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhh
Confidence 356688899999999999999999999999999999 763
No 45
>PRK08937 adenylosuccinate lyase; Provisional
Probab=93.42 E-value=0.068 Score=40.71 Aligned_cols=37 Identities=41% Similarity=0.782 Sum_probs=33.9
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+..+..+.++++|+.||+|+|++ +..
T Consensus 107 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~ 144 (216)
T PRK08937 107 RIALPDAFLALDYILNRFVNILENLVVFPENIERNLDK 144 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHH
Confidence 5689999999999999999999999999999998 653
No 46
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=92.19 E-value=0.26 Score=42.35 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=63.0
Q ss_pred hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchh
Q psy14321 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLS 84 (124)
Q Consensus 5 ~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~ 84 (124)
.|..+-.+++++-.-....+.|+++|.+||.++++.+.- +.-+|.+ .+|=+.|-++ +..|+.+|+ +|.
T Consensus 368 ~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l~~Slm------LVTaLnp-~IGYdkAa~I----AK~A~keg~-tlr 435 (462)
T COG0114 368 FLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLM------LVTALNP-HIGYDKAAKI----AKKAHKEGT-TLR 435 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHhhCch------HHHhccc-ccchHHHHHH----HHHHHHCCC-cHH
Confidence 455566677777777788889999999999999987654 4557777 5887666554 557788887 777
Q ss_pred hhhhhHHHH-HHHHHhhhcCCccCHHHH
Q psy14321 85 ESFLTTDCL-LITLQNVLKGLVVYPKVI 111 (124)
Q Consensus 85 ea~l~~~~~-l~~~~~v~~~l~v~~~~m 111 (124)
|+++..+++ -.-+.++ |+|++|
T Consensus 436 eaa~~~G~lte~efd~~-----v~Pe~m 458 (462)
T COG0114 436 EAALELGLLSEEEFDKL-----VDPEKM 458 (462)
T ss_pred HHHHHcCCCCHHHHHHh-----cCHHHh
Confidence 876666554 2333332 456655
No 47
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=90.40 E-value=0.25 Score=42.17 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=33.3
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+..+..+.++++|+.||||+|++ +.
T Consensus 326 ~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~l~ 362 (452)
T PRK09053 326 WDTLPELACLAAGALAQMAQIVEGLEVDAARMRANLD 362 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHH
Confidence 4588899999999999999999999999999999 65
No 48
>KOG1316|consensus
Probab=89.82 E-value=0.75 Score=39.18 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=62.5
Q ss_pred hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 5 ~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
.+=|++-....++.-+..++++|+||+++|.+-|-. -+.+--+.--|.++|++=-++|+++-++...|.+.|.
T Consensus 331 p~Fds~~tv~~~l~v~tgv~stltvn~e~m~~aLt~---dmlATdlA~YLVrKGvPFRqtHhisG~~V~~ae~rg~ 403 (464)
T KOG1316|consen 331 PLFDSSKTVSDSLQVATGVISTLTVNQENMEKALTP---DMLATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGV 403 (464)
T ss_pred HHHhhHHHHHHHHHHHHHHhhheeECHHHHhhccCc---hhhHhHHHHHHHHcCCCchhhhhhhHHHHHHHHHcCC
Confidence 345677788888999999999999999999987755 4567778888999999999999999999988888775
No 49
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=89.24 E-value=0.35 Score=41.19 Aligned_cols=37 Identities=57% Similarity=1.011 Sum_probs=33.8
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+.++..+..+++|+.||+++|++ +..
T Consensus 322 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~ 359 (436)
T cd03302 322 RIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQ 359 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHh
Confidence 5578999999999999999999999999999999 654
No 50
>PRK09285 adenylosuccinate lyase; Provisional
Probab=89.19 E-value=0.42 Score=41.16 Aligned_cols=35 Identities=20% Similarity=0.015 Sum_probs=31.7
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-h
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-L 114 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~ 114 (124)
++.. ++++...+.++..+..+++||.|||++|++ +
T Consensus 343 e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl 378 (456)
T PRK09285 343 LRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDL 378 (456)
T ss_pred hcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHH
Confidence 4534 899999999999999999999999999998 5
No 51
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=89.09 E-value=0.37 Score=40.37 Aligned_cols=36 Identities=39% Similarity=0.688 Sum_probs=33.4
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+.++..+..+++++.||+++|++ +.
T Consensus 307 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 343 (387)
T cd01360 307 RVILPDATILLDYILRRMTRVLENLVVYPENMRRNLN 343 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 5688999999999999999999999999999999 65
No 52
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=88.92 E-value=0.42 Score=40.82 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=30.9
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
.+++++...+.++..+..+++||.||||+|++ ++
T Consensus 323 ~~~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~ 357 (425)
T cd01598 323 NIGVAFGHSLIAYKSLLRGLDKLELNEARLLEDLD 357 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 34899999999999999999999999999999 53
No 53
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=88.89 E-value=0.39 Score=40.00 Aligned_cols=37 Identities=43% Similarity=0.669 Sum_probs=33.8
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+.++..+..+++|+.||+++|++ ++.
T Consensus 308 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~ 345 (381)
T cd01595 308 RNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDL 345 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHh
Confidence 5688899999999999999999999999999998 654
No 54
>PRK06389 argininosuccinate lyase; Provisional
Probab=88.86 E-value=2.6 Score=36.35 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc
Q psy14321 6 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP 77 (124)
Q Consensus 6 lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~ 77 (124)
+-+++..+..++..+..++++++||++| .+. ..++...++-. -.+..+|++=-+||++|-++...+-.
T Consensus 321 ~~~~~~~~~~~l~l~~~~i~~l~~~~~~-~~a--~~~~~~ATdlA-~~lv~~GipFR~AH~~Vg~~V~~~~~ 388 (434)
T PRK06389 321 TISFINNFERILLGLPDLLYNIKFEITN-EKN--IKNSVYATYNA-WLAFKNGMDWKSAYAYIGNKIREGEV 388 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeECHHH-Hhh--ccCCCcHHHHH-HHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4567777888999999999999999999 433 46666666665 66667799999999999998877543
No 55
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=88.20 E-value=0.35 Score=41.25 Aligned_cols=36 Identities=39% Similarity=0.588 Sum_probs=33.1
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+.++..+.++++++.||+|+|++ +.
T Consensus 322 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 358 (449)
T PRK08540 322 RIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLE 358 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 5678889999999999999999999999999999 64
No 56
>PLN02848 adenylosuccinate lyase
Probab=87.89 E-value=0.49 Score=40.79 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=31.4
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
.+++++...+.++..+..+++||+||+++|++ +..
T Consensus 348 ~~~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~ 383 (458)
T PLN02848 348 NMGVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQ 383 (458)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc
Confidence 34889999999999999999999999999999 654
No 57
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=87.27 E-value=0.54 Score=39.90 Aligned_cols=36 Identities=44% Similarity=0.642 Sum_probs=32.5
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+.++..+.++++|+.||+|+|++ +.
T Consensus 316 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 352 (435)
T TIGR00928 316 RIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLE 352 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHH
Confidence 3358899999999999999999999999999999 65
No 58
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=86.26 E-value=0.65 Score=39.34 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=33.4
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-h
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-L 114 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~ 114 (124)
.++.+++++...+..+..+..+++++.||+++|++ +
T Consensus 302 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l 338 (435)
T cd01359 302 DKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAA 338 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHH
Confidence 36689999999999999999999999999999998 5
No 59
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=85.70 E-value=2 Score=36.81 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=29.9
Q ss_pred CCccchhhhhh---hHHHHHHHH-HhhhcCCccCHHHHhh-hhh
Q psy14321 78 HRRLTLSESFL---TTDCLLITL-QNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 78 ~~~~~l~ea~l---~~~~~l~~~-~~v~~~l~v~~~~m~~-~~~ 116 (124)
..+..+++.+. .....+..+ ..+++|+.||+++|++ +..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~ 399 (450)
T cd01357 356 FEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVEN 399 (450)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 34434455444 888899999 4999999999999999 543
No 60
>PLN02646 argininosuccinate lyase
Probab=83.50 E-value=0.93 Score=39.19 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.3
Q ss_pred CCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 78 ~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
..+.++++++.....++..+..+++++.||+++|++ +.
T Consensus 337 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 375 (474)
T PLN02646 337 EDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLP 375 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 346789999999999999999999999999999998 64
No 61
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=83.48 E-value=1 Score=38.15 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=32.4
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+..+..+.++++++.||+++|++ ++
T Consensus 317 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~ 353 (437)
T cd01597 317 WIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLD 353 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHH
Confidence 4567888999999999999999999999999999 64
No 62
>PLN00134 fumarate hydratase; Provisional
Probab=81.42 E-value=5.1 Score=34.53 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=31.7
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++.+...+.++....++++|+.||+|+|++ +..
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~ 396 (458)
T PLN00134 359 YNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHE 396 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 4567888889998988889999999999999998 543
No 63
>PRK06390 adenylosuccinate lyase; Provisional
Probab=80.88 E-value=1.6 Score=37.34 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=31.7
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
++..+++.+...+.++..+..+++|+.||+++|++ +.
T Consensus 321 e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 358 (451)
T PRK06390 321 ERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLE 358 (451)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHh
Confidence 34447787788889999999999999999999998 55
No 64
>PRK02186 argininosuccinate lyase; Provisional
Probab=79.64 E-value=1.4 Score=40.66 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=33.7
Q ss_pred CCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-h
Q psy14321 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-L 114 (124)
Q Consensus 78 ~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~ 114 (124)
..+..+++++.....++..+..+++++.||+++|++ +
T Consensus 731 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~ 768 (887)
T PRK02186 731 PMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHL 768 (887)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHH
Confidence 346688999999999999999999999999999998 5
No 65
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=79.38 E-value=1.6 Score=38.59 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=31.9
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~ 113 (124)
+..++|++......+..+..+++|+.||+++|++
T Consensus 325 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 358 (614)
T PRK12308 325 KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLE 358 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHH
Confidence 5578999999999999999999999999999998
No 66
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=78.75 E-value=1.9 Score=37.17 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=31.4
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++.+...+.++....++++||.||+|+|++ +.
T Consensus 364 ~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~ 400 (458)
T TIGR00979 364 YNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLN 400 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 4477888889999988888999999999999998 54
No 67
>PRK00855 argininosuccinate lyase; Provisional
Probab=77.76 E-value=2.2 Score=36.60 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=32.3
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-h
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-L 114 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~ 114 (124)
+..+++++......+..+..+++|+.||+++|++ +
T Consensus 327 ~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l 362 (459)
T PRK00855 327 KEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAA 362 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH
Confidence 4578899999999999999999999999999998 5
No 68
>PRK06705 argininosuccinate lyase; Provisional
Probab=75.69 E-value=2.7 Score=36.67 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=28.0
Q ss_pred hhhhhhhHHHH---HHHHHhhhcCCccCHHHHhh-hh
Q psy14321 83 LSESFLTTDCL---LITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 83 l~ea~l~~~~~---l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+++.+...+.+ +..++.+++|+.||+|+|++ +.
T Consensus 333 ~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~ 369 (502)
T PRK06705 333 QPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSY 369 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHh
Confidence 55666677777 99999999999999999999 53
No 69
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=75.39 E-value=8.3 Score=33.34 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHHHH-hhhcCCccCHHHHhh-hh
Q psy14321 84 SESFLTTDCLLITLQ-NVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 84 ~ea~l~~~~~l~~~~-~v~~~l~v~~~~m~~-~~ 115 (124)
.+++......+..+. ++++|+.||+++|++ +.
T Consensus 372 ~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~ 405 (472)
T PRK12273 372 FESISILTNACRTLREKCIDGITANEERCREYVE 405 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 344888888999999 699999999999998 54
No 70
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=74.69 E-value=2.7 Score=35.98 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=31.6
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~ 113 (124)
+..+++++......+..+..+++++.||+++|++
T Consensus 323 ~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~ 356 (455)
T TIGR00838 323 KEPLFDALKTVELSLEMATGMLDTITVNKERMEE 356 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 4578899999999999999999999999999998
No 71
>PRK04833 argininosuccinate lyase; Provisional
Probab=74.11 E-value=3.1 Score=35.74 Aligned_cols=33 Identities=24% Similarity=0.021 Sum_probs=30.8
Q ss_pred cchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh
Q psy14321 81 LTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113 (124)
Q Consensus 81 ~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~ 113 (124)
..+++++.....++..+..+++++.||+++|.+
T Consensus 326 ~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 358 (455)
T PRK04833 326 EGLFDALDTWLDCLHMAALVLDGIQVKRPRCQE 358 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCeECHHHHHH
Confidence 468899999999999999999999999999998
No 72
>PRK12425 fumarate hydratase; Provisional
Probab=73.10 E-value=10 Score=32.82 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=29.2
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
.+++..+..+.++....++++++.||+++|++ +.
T Consensus 367 ~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~ 401 (464)
T PRK12425 367 LLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLE 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 56667777788999999999999999999998 54
No 73
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=72.99 E-value=3.6 Score=35.37 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=29.7
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
.+++.+...+.++.....+++|+.||+++|++ +..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~ 399 (450)
T cd01596 364 LLQSIRLLANACRSFRDKCVEGIEANEERCKEYVEN 399 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 56777788888888777999999999999998 644
No 74
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=71.73 E-value=3.2 Score=35.68 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=30.4
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~ 113 (124)
+..+++.+...+.++...+.+++|+.||+++|++
T Consensus 363 ~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~ 396 (455)
T cd01362 363 YNLLQSIRLLADACRSFADKCVAGIEPNRERIAE 396 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 5577788888898988888999999999999998
No 75
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=69.26 E-value=3.8 Score=35.27 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=29.8
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-h
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-L 114 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~ 114 (124)
.+..+++.+...+.++.....+++|++||+++|++ +
T Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l 402 (464)
T PRK00485 366 AYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH
Confidence 34456777788888888777999999999999998 5
No 76
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=67.95 E-value=11 Score=32.54 Aligned_cols=29 Identities=7% Similarity=0.164 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 87 FLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 87 ~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
....+.++..+..+++|+.||+++|++ +.
T Consensus 372 ~~~~~~~~~~~~~~l~~L~vn~erm~~~l~ 401 (468)
T TIGR00839 372 HILTNACYNLTDKCVNGITANKEICEGYVF 401 (468)
T ss_pred HHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 566777777899999999999999998 54
No 77
>KOG1316|consensus
Probab=65.29 E-value=5.8 Score=33.95 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=33.8
Q ss_pred CCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhhhh
Q psy14321 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLR 118 (124)
Q Consensus 78 ~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~~~ 118 (124)
+.+.++=+++-....++...+-|++++.|||++|++ +-+-|
T Consensus 327 eDKep~Fds~~tv~~~l~v~tgv~stltvn~e~m~~aLt~dm 368 (464)
T KOG1316|consen 327 EDKEPLFDSSKTVSDSLQVATGVISTLTVNQENMEKALTPDM 368 (464)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhhheeECHHHHhhccCchh
Confidence 355677687777788889999999999999999999 76544
No 78
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=61.70 E-value=21 Score=30.88 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=25.4
Q ss_pred CccchhhhhhhH---H-HHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 79 RRLTLSESFLTT---D-CLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 79 ~~~~l~ea~l~~---~-~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
.+..+++.+... . .+.....++++|+.||+|+|++ +.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~ 403 (473)
T PRK13353 362 EPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVE 403 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 343344444444 4 5555556899999999999998 54
No 79
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=56.85 E-value=20 Score=31.16 Aligned_cols=67 Identities=7% Similarity=0.106 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhhhhhh
Q psy14321 11 LTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSESFLT 89 (124)
Q Consensus 11 ~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~ea~l~ 89 (124)
++..++-....+-++|++.|++++++.++.+-|+ .-+|-+ .+|-+.+-++.++ |.++|+ ++.|.++.
T Consensus 376 iL~na~~~l~ekcI~gItaN~e~C~~~v~nSigi------vTaLnp-~iGy~~~~~iaK~----a~~tgk-sv~evvLe 442 (471)
T COG1027 376 ILTNACRNLREKCIDGITANEERCEEYVENSIGI------VTALNP-YIGYENAAIIAKE----ALETGK-SVREVVLE 442 (471)
T ss_pred HHHHHHHHHHHHHhhhcccCHHHHHHHHHhhhHH------HHhhcc-cccchHHHHHHHH----HHHcCC-cHHHHHHH
Confidence 3344444444558999999999999999988775 456777 5887776666665 555676 56576554
No 80
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=51.49 E-value=24 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=16.1
Q ss_pred HHHcCCCHHHHHHHHHHhcCcc
Q psy14321 54 MVKAGGDRQVCHEKIRGALNPL 75 (124)
Q Consensus 54 La~~~lgR~~Ah~~V~~~a~~A 75 (124)
....|++-++||+.++..++..
T Consensus 23 m~~~g~~e~~A~~~Lr~~Am~~ 44 (56)
T PF03861_consen 23 MARYGLSEDEAYRLLRRQAMRR 44 (56)
T ss_dssp HHHHT--HHHHHHHHHHHHHHC
T ss_pred HHHhCcCHHHHHHHHHHHHHHc
Confidence 3334899999999999998873
No 81
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=50.69 E-value=6.2 Score=32.77 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=28.7
Q ss_pred ccCCccchhhhhhhHHHHHHHHHhhhcCCccCH
Q psy14321 76 FPHRRLTLSESFLTTDCLLITLQNVLKGLVVYP 108 (124)
Q Consensus 76 ~~~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~ 108 (124)
+..+|..+||+|...+.++..++++++||.+-.
T Consensus 317 ~~~e~~~lp~~~~~~~~~l~~~~~ll~~l~~~~ 349 (351)
T PRK05975 317 WTLEWMILPQMVAATGAALRLALELAGNIRRLG 349 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhcc
Confidence 344678999999999999999999999998743
No 82
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=50.19 E-value=14 Score=32.22 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=31.7
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~ 113 (124)
.+.++.+++-.....|..++.+++++.||+++|++
T Consensus 325 dke~lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~ 359 (459)
T COG0165 325 DKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERMRE 359 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHH
Confidence 45578888888899999999999999999999998
No 83
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=47.61 E-value=35 Score=21.79 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhh
Q psy14321 47 TENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSE 85 (124)
Q Consensus 47 SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~e 85 (124)
+--+.-.|.++|++=-+||++|-++...|.+.|.. +.+
T Consensus 4 ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~~~~-l~~ 41 (70)
T PF14698_consen 4 ATDLADYLVRKGIPFREAHHIVGRLVRLAEEEGKP-LSE 41 (70)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTTS--GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC-hhh
Confidence 33455677888999999999999999999999984 655
No 84
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=44.81 E-value=27 Score=30.46 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=23.6
Q ss_pred hhhhhHHHHH-HHHHhhhcCCccCHHHHhh-hhh
Q psy14321 85 ESFLTTDCLL-ITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 85 ea~l~~~~~l-~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+++......+ ....++++|+.||+++|++ +..
T Consensus 377 ~si~~l~~al~~~~~~~l~gl~vn~erm~~~l~~ 410 (479)
T PRK14515 377 QSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEK 410 (479)
T ss_pred HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 3444666777 4455699999999999998 543
No 85
>PLN02150 terpene synthase/cyclase family protein
Probab=44.39 E-value=58 Score=22.11 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHcCCCHHHHHHHHHHhcCccccC------CccchhhhhhhHHHHHHHHHhhh-----cCCccCHHHHhh-hhhh
Q psy14321 53 AMVKAGGDRQVCHEKIRGALNPLFPH------RRLTLSESFLTTDCLLITLQNVL-----KGLVVYPKVIQR-LNTL 117 (124)
Q Consensus 53 aLa~~~lgR~~Ah~~V~~~a~~A~~~------~~~~l~ea~l~~~~~l~~~~~v~-----~~l~v~~~~m~~-~~~~ 117 (124)
-+-+.|.+.++|.+.+++....+|.+ ...++|-.++..-.=+.++..++ ||-...++.+++ +..+
T Consensus 13 YMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~~~K~~I~sL 89 (96)
T PLN02150 13 YMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHGKLKDLITSL 89 (96)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcHHHHHHHHHH
Confidence 34445899999999999999999875 11234443333222234455556 666655566766 5443
No 86
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=42.61 E-value=42 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q psy14321 45 MATENIIMAMVKAGGDRQVCHEKIRGALN 73 (124)
Q Consensus 45 I~SE~vm~aLa~~~lgR~~Ah~~V~~~a~ 73 (124)
.+.|.+..+..+.|++|++|.+++.+...
T Consensus 22 ~~~eal~~a~v~~Gl~~~~A~~lv~~t~~ 50 (107)
T PF14748_consen 22 LFIEALADAAVAQGLPREEARKLVAQTFI 50 (107)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46788888888889999999999887543
No 87
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=40.48 E-value=1.1e+02 Score=23.05 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=35.3
Q ss_pred eeCHHHHHHHHHhhCCc-----hHHHHHHHHHHHcCCCHHHHHHHHHHhcCc
Q psy14321 28 VVYPKVIQRHIDQELPF-----MATENIIMAMVKAGGDRQVCHEKIRGALNP 74 (124)
Q Consensus 28 ~V~~~rM~~Nl~~t~gl-----I~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~ 74 (124)
.++++.|..-...++-- .+.+.+.-++.+.|++|++|++++.+...-
T Consensus 161 ~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g 212 (245)
T PRK07634 161 LCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISG 212 (245)
T ss_pred EECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57777776654444442 678888888888899999999999876554
No 88
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=35.10 E-value=1.4e+02 Score=23.23 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=37.5
Q ss_pred CeeCHHHHHHHHHhhCC-----chHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q psy14321 27 LVVYPKVIQRHIDQELP-----FMATENIIMAMVKAGGDRQVCHEKIRGALN 73 (124)
Q Consensus 27 L~V~~~rM~~Nl~~t~g-----lI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~ 73 (124)
..|+++.|..=...++. +.+.|++.-+..+.|++|++|.+++.+...
T Consensus 151 ~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 151 QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46888888777777666 356788888888889999999999987553
No 89
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=34.66 E-value=22 Score=29.28 Aligned_cols=29 Identities=28% Similarity=0.179 Sum_probs=25.3
Q ss_pred ccCCccchhhhhhhHHHHHHHHHhhhcCC
Q psy14321 76 FPHRRLTLSESFLTTDCLLITLQNVLKGL 104 (124)
Q Consensus 76 ~~~~~~~l~ea~l~~~~~l~~~~~v~~~l 104 (124)
+..+|..+|++|...+.++..++++++||
T Consensus 310 ~~~e~~~lp~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 310 WHAEWETLPELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44467789999999999999999999986
No 90
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=29.98 E-value=78 Score=25.56 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=38.1
Q ss_pred hCCeeCHHHHHHHHHhhCC-----chHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q psy14321 25 EGLVVYPKVIQRHIDQELP-----FMATENIIMAMVKAGGDRQVCHEKIRGALN 73 (124)
Q Consensus 25 ~gL~V~~~rM~~Nl~~t~g-----lI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~ 73 (124)
+-.+|+++.|..=-..++- +.+.|++.-+-.+.|++|++|++++.+...
T Consensus 153 ~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~ 206 (266)
T COG0345 153 KVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVA 206 (266)
T ss_pred CeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3467888888876666554 246799999999899999999999987543
No 91
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=25.33 E-value=1.1e+02 Score=23.70 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=35.0
Q ss_pred CeeCHHHHHHHHHhhCC-----chHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q psy14321 27 LVVYPKVIQRHIDQELP-----FMATENIIMAMVKAGGDRQVCHEKIRGALN 73 (124)
Q Consensus 27 L~V~~~rM~~Nl~~t~g-----lI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~ 73 (124)
..|+++.|..=...++. +.+.|++.-+..+.|++|++|.+++.+...
T Consensus 138 ~~v~E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~ 189 (245)
T TIGR00112 138 VELPEALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVK 189 (245)
T ss_pred EEECHHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35787777666665533 356788888888889999999999987553
No 92
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.20 E-value=1.1e+02 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.051 Sum_probs=37.4
Q ss_pred CeeCHHHHHHHHHhhCCc-----hHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q psy14321 27 LVVYPKVIQRHIDQELPF-----MATENIIMAMVKAGGDRQVCHEKIRGALN 73 (124)
Q Consensus 27 L~V~~~rM~~Nl~~t~gl-----I~SE~vm~aLa~~~lgR~~Ah~~V~~~a~ 73 (124)
..++++.|..-...++-- .+.|++.-+..+.|++|++|++++.+...
T Consensus 158 ~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~ 209 (272)
T PRK12491 158 EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVL 209 (272)
T ss_pred EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 568888888777776543 56788888888889999999999988554
No 93
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.61 E-value=68 Score=24.98 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=28.7
Q ss_pred hCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCc
Q psy14321 25 EGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNP 74 (124)
Q Consensus 25 ~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~ 74 (124)
..|+.+-+...++|+.-+-+=-+-.++ ..++|+|=++||+.+++.+|.
T Consensus 128 ~~L~~el~~~k~~L~~rK~ierAKglL--M~~~g~sE~EAy~~lR~~AM~ 175 (194)
T COG3707 128 RALRRELAKLKDRLEERKVIERAKGLL--MKRRGLSEEEAYKLLRRTAMD 175 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHh
Confidence 344444455555554443322222222 233589999999999999987
No 94
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=23.96 E-value=31 Score=21.22 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=16.1
Q ss_pred HHHHHHHhcCccccCCccchhhhhhhHH
Q psy14321 64 CHEKIRGALNPLFPHRRLTLSESFLTTD 91 (124)
Q Consensus 64 Ah~~V~~~a~~A~~~~~~~l~ea~l~~~ 91 (124)
-|+...+++.+|+++|+ ++.|++...+
T Consensus 10 GYe~aa~iAk~A~~~g~-svre~v~~~g 36 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGR-SVREVVLEEG 36 (55)
T ss_dssp HHHHHHHHHHHHHHHT---HHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCC-CHHHHHHHcC
Confidence 35556666677888888 6767655443
No 95
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=21.86 E-value=55 Score=26.47 Aligned_cols=32 Identities=41% Similarity=0.453 Sum_probs=27.6
Q ss_pred ccCCccchhhhhhhHHHHHHHHHhhhcCCccC
Q psy14321 76 FPHRRLTLSESFLTTDCLLITLQNVLKGLVVY 107 (124)
Q Consensus 76 ~~~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~ 107 (124)
+...+..+++++......+..+..+++++.||
T Consensus 294 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 294 SPVEREALPDSFDLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence 33356789999999999999999999999986
No 96
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=21.06 E-value=99 Score=27.02 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCccccC-------CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhhh
Q psy14321 46 ATENIIMAMVKAGGDRQVCHEKIRGALNPLFPH-------RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTL 117 (124)
Q Consensus 46 ~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~-------~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~~ 117 (124)
.+|+++|..++ -+|-+.|-.. ..++--|+= ....|..+-+..|.+.++..+...|+.++.++|++ ++.-
T Consensus 328 q~EA~tmv~~Q-V~Gnd~ai~~--ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l~~S 404 (462)
T COG0114 328 QCEALTMVAAQ-VIGNDAAIAF--AGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERS 404 (462)
T ss_pred hHHHHHHHHHH-HHcchHHHHH--hhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHhhC
Confidence 48999999998 6888764321 111111221 23356667788899999999999999999999999 7665
Q ss_pred hhhh
Q psy14321 118 RVLI 121 (124)
Q Consensus 118 ~~~~ 121 (124)
..|+
T Consensus 405 lmLV 408 (462)
T COG0114 405 LMLV 408 (462)
T ss_pred chHH
Confidence 5554
No 97
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=20.89 E-value=1.3e+02 Score=16.99 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHhhhhCCeeCHHHHHHHHHhhCC
Q psy14321 19 TLQNVLEGLVVYPKVIQRHIDQELP 43 (124)
Q Consensus 19 ~~~~ll~gL~V~~~rM~~Nl~~t~g 43 (124)
.+..+++.+.+|++.+++-++...|
T Consensus 29 ~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 29 IAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 6778888899999999888776543
No 98
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=20.54 E-value=54 Score=22.23 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=16.2
Q ss_pred cCCCHHHHHHHHHHhcCccc
Q psy14321 57 AGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 57 ~~lgR~~Ah~~V~~~a~~A~ 76 (124)
+.+||++|++.+.+.+....
T Consensus 10 H~Lg~~eAr~~~e~~a~~l~ 29 (91)
T TIGR02610 10 HSLGPAAARAKAEDLARKLT 29 (91)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999766554
Done!