RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14321
(124 letters)
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 134 bits (340), Expect = 6e-39
Identities = 50/68 (73%), Positives = 58/68 (85%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ + E+FL D +LITLQN+ EGLVVYPKVI+RHI QELPFMATENIIMA VKAGGDR
Sbjct: 321 RRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDR 380
Query: 62 QVCHEKIR 69
Q HE+IR
Sbjct: 381 QDAHERIR 388
Score = 59.6 bits (145), Expect = 1e-11
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
RR+ + E+FL D +LITLQN+ +GLVVYPKVI+R
Sbjct: 321 RRIAIPEAFLAADAILITLQNISEGLVVYPKVIER 355
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 87.0 bits (216), Expect = 2e-22
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 60
+R+ L ++FL D +L N+LE LVV+P+ I+R++D+ L F+ATE +++ +V+ G
Sbjct: 105 AERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMG 164
Query: 61 RQVCHEKIR 69
R+ HE IR
Sbjct: 165 REEAHELIR 173
Score = 43.1 bits (102), Expect = 6e-06
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 77 PHRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
R+ L ++FL D +L N+L+ LVV+P+ I+R
Sbjct: 104 SAERIALPDAFLALDYILNRFVNILENLVVFPENIER 140
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 86.8 bits (216), Expect = 3e-21
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R L ++FL D L LQ +LEGLVV P+ ++R++D + +E ++MA+ K G RQ
Sbjct: 308 RNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQ 367
Query: 63 VCHEKIR 69
+E ++
Sbjct: 368 EAYELVK 374
Score = 46.0 bits (110), Expect = 7e-07
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
R L ++FL D L LQ +L+GLVV P+ ++R L+ LI +
Sbjct: 307 ERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILS 352
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 77.3 bits (191), Expect = 8e-18
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 60
++R+ L ++F+ D L L NVLEGL V P+ ++R++D L +A+E +++A+ K G
Sbjct: 315 VERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMG 374
Query: 61 RQVCHEKIRGA 71
R+ HE +R
Sbjct: 375 REEAHELVREK 385
Score = 40.7 bits (96), Expect = 5e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINAP 124
R+ L ++F+ D L L NVL+GL V P+ ++R L+ LI +
Sbjct: 316 ERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASE 362
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 73.5 bits (181), Expect = 2e-16
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R+ L +SF+ D +L T V++ LVV P+ I R+++ L +A+E +++A+V+ G R+
Sbjct: 316 RIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGRE 375
Query: 63 VCHEKIR 69
+E +R
Sbjct: 376 EAYEIVR 382
Score = 43.1 bits (102), Expect = 8e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
R+ L +SF+ D +L T V+K LVV P+ I R
Sbjct: 315 ERIILPDSFILADIMLKTTLKVVKKLVVNPENILR 349
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 55.6 bits (135), Expect = 3e-10
Identities = 18/67 (26%), Positives = 42/67 (62%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R+ L ++ + D +L + VLE LVVYP+ ++R+++ + ++ +++A+V+ G R+
Sbjct: 307 RVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSRE 366
Query: 63 VCHEKIR 69
+E ++
Sbjct: 367 EAYEIVQ 373
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLI 121
R+ L ++ + D +L + VL+ LVVYP+ ++R LN + LI
Sbjct: 307 RVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLI 349
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 45.7 bits (109), Expect = 1e-06
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMA------MVK 56
R+ ES + TD +L + VLEGL P+ I+R+++ T+ +IMA + K
Sbjct: 322 RIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLE------LTKGLIMAEAVMIELAK 375
Query: 57 AGGDRQVCHEKIRGA 71
G RQ HE +R A
Sbjct: 376 RGMGRQEAHELVRQA 390
Score = 35.3 bits (82), Expect = 0.004
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 73 NPLFPHRRLTLS--------ESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
NPL+ R LT S ES + TD +L + VL+GL P+ I+R L + LI A
Sbjct: 307 NPLWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMA 366
>gnl|CDD|198066 smart00998, ADSL_C, Adenylosuccinate lyase C-terminus.
Adenylosuccinate lyase catalyses two steps in the
synthesis of purine nucleotides: the conversion of
succinylaminoimidazole-carboxamide ribotide into
aminoimidazole-carboxamide ribotide (the fifth step of
de novo IMP biosynthesis); the formation of adenosine
monophosphate (AMP) from adenylosuccinate (the final
step in the synthesis of AMP from IMP). This entry
represents the C-terminal, seven alpha-helical, domain
of adenylosuccinate lyase.
Length = 81
Score = 39.0 bits (92), Expect = 3e-05
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 42 LPFMATENIIMAMVKAGGDRQVCHEKIR 69
+ +E +++A+V+ G R+ +E ++
Sbjct: 1 GGLIFSERVLLALVEKGLGREEAYELVQ 28
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 39.7 bits (93), Expect = 1e-04
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R L ++F+TTD +L L NV+E LVVYP+ + ++++ + ++ +++ + K G R
Sbjct: 309 ERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSR 368
Query: 62 Q 62
+
Sbjct: 369 E 369
Score = 37.4 bits (87), Expect = 7e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 8/53 (15%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPK-VIQRLN-------TLRVLINAP 124
R L ++F+TTD +L L NV++ LVVYP+ +++ LN + RVL+ P
Sbjct: 310 RFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELP 362
>gnl|CDD|220731 pfam10397, ADSL_C, Adenylosuccinate lyase C-terminus. This is
the C-terminal seven alpha helices of the structure
whose full length represents the enzyme
adenylosuccinate lyase. This sequence lies C-terminal
to the conserved motif necessary for beta-elimination
reactions, Adenylosuccinate lyase catalyzes two steps
in the synthesis of purine nucleotides: the conversion
of succinylaminoimidazole-carboxamide ribotide into
aminoimidazole-carboxamide ribotide, the eighth step of
the de novo pathway, and the formation of adenosine
monophosphate (AMP) from adenylosuccinate, the second
step in the conversion of inosine monophosphate into
AMP.
Length = 80
Score = 37.0 bits (87), Expect = 2e-04
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 43 PFMATENIIMAMVKAGGDRQVCHEKIR 69
+ +E +++A+ + G R+ +E ++
Sbjct: 1 GLIMSERVLLALAEKGLGREEAYELVQ 27
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 35.7 bits (83), Expect = 0.003
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 64
L E FL L + +L GL V ++ ++D + +E ++MA+ G RQ
Sbjct: 319 ALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLG-RQEA 377
Query: 65 HE 66
H+
Sbjct: 378 HD 379
Score = 29.5 bits (67), Expect = 0.35
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
L E FL L + +L GL V ++ L+ LI +
Sbjct: 319 ALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILS 361
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 34.1 bits (78), Expect = 0.011
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 60
++R T+ + + D +L + +VL L++ I+R+++ + + +E+I+ A+ +G
Sbjct: 320 LERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESD-DSIMSESIVRALTLSGMP 378
Query: 61 RQVCHEKIRGA 71
RQ HE +R A
Sbjct: 379 RQDAHEFVRRA 389
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 31.9 bits (73), Expect = 0.054
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 12 TTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
T D L L V+E LVVYP+ + +++++ + ++ +++A+ +AG R+
Sbjct: 322 TLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSRE 372
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 29.2 bits (66), Expect = 0.48
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 40 QELPFMATENIIMAMV--KAGG---DRQVCHEKIRGALNPLFPHRRL 81
EL +A E ++ +V ++ G D+Q EK+R +LN L RRL
Sbjct: 122 DELLTLADEAKLLKLVNNRSTGSDLDKQKLQEKVRTSLNRL---RRL 165
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase.
Length = 400
Score = 27.8 bits (63), Expect = 1.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 46 ATENIIMAMVKAGG 59
ATENI+MA V A G
Sbjct: 156 ATENIMMAAVLAEG 169
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 27.3 bits (62), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 42 LPFM---ATENIIMAMVKAGG 59
L F ATENI+MA V A G
Sbjct: 160 LDFPSVGATENILMAAVLAEG 180
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase
[Cell envelope biogenesis, outer membrane].
Length = 421
Score = 27.1 bits (61), Expect = 2.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 46 ATENIIMAMVKAGGD 60
ATENI+MA V A G
Sbjct: 167 ATENIMMAAVLAEGT 181
>gnl|CDD|220058 pfam08885, GSCFA, GSCFA family. This family of proteins are
functionally uncharacterized. They have been named GSCFA
after a highly conserved N-terminal motif in the
alignment. Distant similarity to the pfam00657 lipases
suggests these proteins are likely to be enzymes.
Length = 251
Score = 26.8 bits (60), Expect = 3.1
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 6 LSESFLTTDCLLITL------QNVLEGLVVY--PKVIQRHIDQEL 42
+ D + TL ++ G VV PKV Q D+EL
Sbjct: 95 VRAQLKEADVFVFTLGLAEAWRDRETGEVVANCPKVPQGRFDKEL 139
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 26.7 bits (60), Expect = 3.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 77 PHRRLTLSESFLTTDCLLITLQNVLKGLVVY 107
P R L +SF D L L VL+GL V
Sbjct: 295 PVEREALPDSFDLLDAALRLLTGVLEGLEVN 325
Score = 25.9 bits (58), Expect = 6.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVY 30
R L +SF D L L VLEGL V
Sbjct: 298 REALPDSFDLLDAALRLLTGVLEGLEVN 325
>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU. Three
different but partially homologous Fe-S cluster assembly
systems have been described: Isc, Suf, and Nif. The
latter is associated with donation of an Fe-S cluster to
nitrogenase in a number of nitrogen-fixing species.
NifU, described here, consists of an N-terminal domain
(pfam01592) and a C-terminal domain (pfam01106).
Homologs with an equivalent domain archictecture from
Helicobacter and Campylobacter, however, are excluded
from this model by a high trusted cutoff. The model,
therefore, is specific for NifU involved in nitrogenase
maturation. The related model TIGR01999 homologous to
the N-terminus of this model describes IscU from the Isc
system as in E. coli, Saccharomyces cerevisiae, and Homo
sapiens [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 290
Score = 26.8 bits (59), Expect = 3.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 55 VKAGGDRQVCHEKIRGAL 72
KAGG CHEKI L
Sbjct: 166 TKAGGGCGSCHEKIEDVL 183
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 26.7 bits (59), Expect = 4.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 26 GLVVYPKVIQRHIDQELPFMATENI 50
G V P I H +PFM TE I
Sbjct: 52 GKFVMPGGIDPHTHLAMPFMGTETI 76
>gnl|CDD|182245 PRK10110, PRK10110, bifunctional PTS system maltose and
glucose-specific transporter subunits IICB; Provisional.
Length = 530
Score = 26.2 bits (58), Expect = 4.8
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 42 LPFMATENIIMAMVK---AGGDRQVCHEKIRGALN 73
LPF +I++A+++ AGG ++VC + + GAL
Sbjct: 235 LPF-GLHHILVALIRFTDAGGTQEVCGQTVSGALT 268
>gnl|CDD|225637 COG3095, MukE, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 238
Score = 26.0 bits (57), Expect = 5.2
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 35 QRHIDQELPFMATENIIMAMV--KAGG---DRQVCHEKIRGALNPLFPHRRL 81
Q+ + EL +A E ++ +V ++ G DRQ EK+R +LN L RRL
Sbjct: 115 QQELYDELLTLADEAKLLKLVNNRSTGSDLDRQKLQEKVRSSLNRL---RRL 163
>gnl|CDD|233682 TIGR02004, PTS-IIBC-malX, PTS system, maltose and glucose-specific
IIBC component. This model represents a family of PTS
enzyme II fused B and C components including and most
closely related to the MalX maltose and glucose-specific
transporter of E. coli. A pair of paralogous genes from
E. coli strain CFT073 score between trusted and noise
and may have diverged sufficiently to have an altered
substrate specificity [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 517
Score = 26.3 bits (58), Expect = 5.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 LPFMATENIIMAMVK---AGGDRQVCHEKIRGALNPLFPHRRLTLSESFLT 89
LP +I++AM++ AGG VC +++ GALN + + L S +
Sbjct: 226 LPI-GLHHILVAMIRFTEAGGSAVVCGKEVSGALNIFYAELQCNLPISAVP 275
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 25.8 bits (57), Expect = 6.7
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
R+ L + + +L + +++K L+VYP+ ++R
Sbjct: 310 RVMLPDCSILLHFMLREMTDLVKNLLVYPENMRR 343
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 25.5 bits (57), Expect = 7.8
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 42 LPFM-ATENIIMAMVKAGGDRQVCHEKIRGAL 72
LP + A EN+ + ++ AG ++ E+ L
Sbjct: 94 LPDLTALENVELPLLLAGVPKKERRERAEELL 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.406
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,112,364
Number of extensions: 535080
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 43
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (23.9 bits)