RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14321
(124 letters)
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 113 bits (286), Expect = 4e-31
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG R
Sbjct: 359 RRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSR 418
Query: 62 QVCHEKIR 69
Q CHEKIR
Sbjct: 419 QDCHEKIR 426
Score = 55.4 bits (134), Expect = 2e-10
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
RR+ L+E+FLT D +L TLQN+ +GLVVYPKVI+R
Sbjct: 359 RRICLAEAFLTADTILNTLQNISEGLVVYPKVIER 393
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 113 bits (284), Expect = 7e-31
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ + + LT + LL TLQN+ EGL V +++ ++ E+ F+ E +M + + G DR
Sbjct: 333 RRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDR 392
Query: 62 QVCHEKIR 69
Q H IR
Sbjct: 393 QQAHAVIR 400
Score = 55.0 bits (133), Expect = 4e-10
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
RR+ + + LT + LL TLQN+ +GL V +++
Sbjct: 333 RRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKK 367
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 78.1 bits (193), Expect = 2e-18
Identities = 17/69 (24%), Positives = 37/69 (53%)
Query: 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 60
+R+ + E+ L D +L + VL+ + + + I ++ + LP++ TE + M+K G
Sbjct: 308 NERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGAS 367
Query: 61 RQVCHEKIR 69
R ++K +
Sbjct: 368 RAEAYKKAK 376
Score = 44.6 bits (106), Expect = 1e-06
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
R+ + E+ L D +L + VLK + + + I L I
Sbjct: 310 RVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILT 354
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 56.2 bits (136), Expect = 1e-10
Identities = 11/67 (16%), Positives = 39/67 (58%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R+ L ++ + + +L N+++ L VYP+ ++R++ + + ++ +++ ++ G R+
Sbjct: 321 RVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVRE 380
Query: 63 VCHEKIR 69
++ ++
Sbjct: 381 EAYDIVQ 387
Score = 39.2 bits (92), Expect = 1e-04
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
R+ L ++ + + +L N++K L VYP+ ++R + LI +
Sbjct: 321 RVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYS 365
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 55.0 bits (133), Expect = 3e-10
Identities = 11/67 (16%), Positives = 31/67 (46%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R L ++F L ++N ++ LVV +I+ + ++++ + + R+
Sbjct: 310 RFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMRE 369
Query: 63 VCHEKIR 69
C++ ++
Sbjct: 370 DCYKIVQ 376
Score = 38.8 bits (91), Expect = 2e-04
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
R L ++F L ++N + LVV +I+ + + +++
Sbjct: 310 RFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSS 354
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 55.0 bits (133), Expect = 4e-10
Identities = 10/67 (14%), Positives = 36/67 (53%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R ++ T +++T NV+ + V + ++++ID + ++ +++ +++ G R+
Sbjct: 309 RYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRK 368
Query: 63 VCHEKIR 69
++ ++
Sbjct: 369 EAYDIVQ 375
Score = 39.2 bits (92), Expect = 1e-04
Identities = 7/45 (15%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
R ++ T +++T NV++ + V + +++ ++ + L+ +
Sbjct: 309 RYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFS 353
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 46.1 bits (110), Expect = 5e-07
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
+ E F +L + +L GL V+P ++ ++D + E ++MA+ G R+
Sbjct: 322 WSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTG-RK 380
Query: 63 VCHEKIRGA 71
H+ +
Sbjct: 381 EAHDIVYLG 389
Score = 38.8 bits (91), Expect = 2e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
+ E F +L + +L GL V+P ++ L+ R LI A
Sbjct: 322 WSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVA 366
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 45.4 bits (108), Expect = 8e-07
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
TL + L Q + EG+ V ++R++D + E + + + + G R
Sbjct: 324 WETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLG-RD 382
Query: 63 VCHEKIRGA 71
H +
Sbjct: 383 RAHHLLEQC 391
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
TL + L Q + +G+ V ++R L+ + L+ A
Sbjct: 324 WETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLA 368
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 44.2 bits (105), Expect = 2e-06
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
L+L E F T L +VL+G+ V + + ++I+ + E ++MA+ G R
Sbjct: 328 WLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMG-RL 386
Query: 63 VCHEKIRGA 71
H + A
Sbjct: 387 NAHHVVEAA 395
Score = 38.8 bits (91), Expect = 1e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
L+L E F T L +VLKG+ V + + + + LI A
Sbjct: 328 WLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMA 372
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.11
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 33/152 (21%)
Query: 6 LSESFLTTDCLLITLQNVLEGLVV------YPKVIQR-HIDQELPFMATENIIMAMVKAG 58
+S + LL + +++ V Y ++ +Q P M T I +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 59 GD----------RQVCHEKIRGALNPLFPHRRLTL------SESFLTTD-CLLITLQNVL 101
D R + K+R AL L P + + + ++++ D CL +Q +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 102 KGLVVYPKV---------IQRLNTLRVLINAP 124
+ + + ++ L L I+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Score = 25.2 bits (54), Expect = 7.2
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 1 MKRLTLSESFL--------TTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIM 52
+ + L FL T ++ N L+ L Y I D + + N I+
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDPKYERLVNAIL 549
Query: 53 AMVKAGGDRQVCHEK---IRGALNP 74
+ + +C + +R AL
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMA 574
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.18
Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 52/156 (33%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEG-----LVV---YPKVIQRHIDQ---ELPFMATENII 51
+L S L D L EG L + + +Q ++++ LP A + +
Sbjct: 316 NTSLPPSILE-DSL-----ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP--AGKQVE 367
Query: 52 MA-------MVKAG------G-DRQVCHEKIRGALN----PLFPHRRLTLSESFLTTDC- 92
++ +V +G G + + K L+ P F R+L S FL
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASP 426
Query: 93 ----LLITLQNVLKGLVVYPKVIQRLNTLRVLINAP 124
LL+ + + L V NA
Sbjct: 427 FHSHLLVP---------ASDLINKDLVKNNVSFNAK 453
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 28.0 bits (63), Expect = 0.88
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 3 RLTLSESFLTTDCLLIT---LQNVLEGLVVYPKVIQRH 37
LTL + T L+ L ++ L H
Sbjct: 321 WLTLPQMVTATGTSLLVAERLAAQIDRLGADESHHHHH 358
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 27.9 bits (63), Expect = 1.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 46 ATENIIMAMVKAGG 59
AT+NI+MA A G
Sbjct: 190 ATQNIMMAATLAEG 203
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 27.6 bits (62), Expect = 1.2
Identities = 2/14 (14%), Positives = 5/14 (35%)
Query: 46 ATENIIMAMVKAGG 59
A + ++ G
Sbjct: 195 AVKTALLMGAVTHG 208
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 27.4 bits (62), Expect = 1.3
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 46 ATENIIMAMVKAGG 59
TEN ++ +
Sbjct: 173 GTENALLYLASVPE 186
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 27.4 bits (62), Expect = 1.4
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 46 ATENIIMAMVKAGG 59
AT I+ A A G
Sbjct: 165 ATVTIMSAATLAEG 178
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein,
CDC4-like protein; PH-beach domains, vesicle
trafficking, signal transduction; 2.40A {Homo sapiens}
SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Length = 414
Score = 25.5 bits (55), Expect = 5.4
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 11 LTTDCLLITLQNVLEG-LVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIR 69
L+T L+ V++G L V + +D+E P + + G + +IR
Sbjct: 5 LSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIR 64
Query: 70 GALNPLFPHRRLTLSESFLTTDC-LLITLQN 99
+ + + L E F+ ++ +
Sbjct: 65 SIFSRRYLLQNTAL-EIFMANRVAVMFNFPD 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.406
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,738,577
Number of extensions: 92130
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 28
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)