RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14321
         (124 letters)



>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
           aerophilum [TaxId: 13773]}
          Length = 402

 Score = 60.4 bits (145), Expect = 2e-12
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 10  FLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIR 69
            L  D +L +   VL+ + +  + I  ++ + LP++ TE  +  M+K G  R   ++K +
Sbjct: 316 LLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAK 375



 Score = 26.1 bits (56), Expect = 1.3
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 87  FLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
            L  D +L +   VLK + +  + I   L      I  
Sbjct: 316 LLALDEILTSALRVLKNVYIDEERITENLQKALPYILT 353


>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
           [TaxId: 2336]}
          Length = 429

 Score = 41.8 bits (97), Expect = 6e-06
 Identities = 7/49 (14%), Positives = 28/49 (57%)

Query: 21  QNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIR 69
            NV+  + V  + ++++ID     + ++ +++ +++ G  R+  ++ ++
Sbjct: 327 TNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQ 375


>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
          beige-like anchor protein LRBA {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 24.1 bits (52), Expect = 3.7
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 11 LTTDCLLITLQNVLEG-LVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIR 69
          L+T   L+    V++G L V    +   +D+E P     +  +     G   +    +IR
Sbjct: 5  LSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIR 64

Query: 70 GALNPLFPHRRLTLSESFLT 89
             +  +  +   L E F+ 
Sbjct: 65 SIFSRRYLLQNTAL-EIFMA 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.406 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,421
Number of extensions: 16445
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)