BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14322
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 48 SRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQV 93
S VKQ G +NDL++RI+ D YF+PI +Q+ LLDP SF GRA +QV
Sbjct: 415 SVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQV 460
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 1 MDEQAISRARDELRFRGVKGTTGTQASFLELF 32
MD Q + R RD+LRFRGVKGTTGTQASFL+LF
Sbjct: 184 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLF 215
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 48 SRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQV 93
S VKQ G +NDL++RI+ D YF+PI +Q+ LLDP SF GRA +QV
Sbjct: 434 SVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQV 479
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 1 MDEQAISRARDELRFRGVKGTTGTQASFLELF 32
MD Q + R RD+LRFRGVKGTTGTQASFL+LF
Sbjct: 203 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLF 234
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 48 SRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQV 93
S VKQ G +NDL++RI+ D YF+PI +Q+ LLDP SF GRA +QV
Sbjct: 415 SVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQV 460
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 1 MDEQAISRARDELRFRGVKGTTGTQASFLELF 32
MD Q + R RD+LRFRGVKGTTGTQASFL+LF
Sbjct: 184 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLF 215
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 48 SRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQV 93
S VKQ G +NDL++RI+ D YF+PI +Q+ LLDP SF GRA +QV
Sbjct: 434 SVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQV 479
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 1 MDEQAISRARDELRFRGVKGTTGTQASFLELF 32
MD Q + R RD+LRFRGVKGTTGTQASFL+LF
Sbjct: 203 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLF 234
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 4 QAISRARDELRFRGVKGTTGTQASFLELF 32
Q++S RD+ RFRG+KG TGTQ SFL LF
Sbjct: 180 QSLSEFRDKXRFRGIKGATGTQDSFLTLF 208
>pdb|3PXP|A Chain A, Crystal Structure Of A Pas And Dna Binding Domain
Containing Protein (Caur_2278) From Chloroflexus
Aurantiacus J-10-Fl At 2.30 A Resolution
pdb|3PXP|B Chain B, Crystal Structure Of A Pas And Dna Binding Domain
Containing Protein (Caur_2278) From Chloroflexus
Aurantiacus J-10-Fl At 2.30 A Resolution
pdb|3PXP|C Chain C, Crystal Structure Of A Pas And Dna Binding Domain
Containing Protein (Caur_2278) From Chloroflexus
Aurantiacus J-10-Fl At 2.30 A Resolution
Length = 292
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 62 RIRADPYFAPILNQMPTLLDPKSFYGRAPEQVVD 95
R+RAD YF +L+ + + K F+ RA + D
Sbjct: 187 RVRADGYFVELLDNLXQYREFKRFWERAHLETED 220
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 1 MDEQAISRARDELRFRGVKGTTGTQASFLELFNDITLQFATSPFSP 46
M E+ IS + RF ++ F LF D T ++ + F P
Sbjct: 21 MAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEP 66
>pdb|3GMI|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Methanocaldococcus Jannaschii
Length = 357
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 14 RFRGVKGTTGTQASFLELFNDITLQFATSPFSPRSRVKQHGKENDLV-----DRI 63
R G+ GT +A F F DI + S + +GK N+L+ DRI
Sbjct: 223 RLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYDNGKLNELILKRFEDRI 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,832,590
Number of Sequences: 62578
Number of extensions: 96805
Number of successful extensions: 130
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 15
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)