Query psy14322
Match_columns 97
No_of_seqs 140 out of 442
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 16:54:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2700|consensus 99.0 7.5E-11 1.6E-15 99.4 2.1 52 45-96 406-457 (481)
2 PF10397 ADSL_C: Adenylosuccin 98.1 2.4E-07 5.2E-12 60.4 -2.3 41 56-96 38-80 (81)
3 KOG2700|consensus 97.9 5.3E-06 1.2E-10 70.5 2.1 36 1-36 178-213 (481)
4 PRK08470 adenylosuccinate lyas 96.6 0.00033 7.1E-09 58.1 -1.1 42 54-95 396-439 (442)
5 cd03302 Adenylsuccinate_lyase_ 96.5 0.0012 2.6E-08 54.5 1.8 46 43-88 391-436 (436)
6 PRK07380 adenylosuccinate lyas 96.4 0.0012 2.6E-08 54.8 0.9 76 20-96 350-429 (431)
7 PRK07492 adenylosuccinate lyas 95.6 0.0037 8E-08 51.9 0.3 39 57-95 390-430 (435)
8 TIGR00928 purB adenylosuccinat 94.9 0.01 2.3E-07 48.8 1.0 60 37-96 372-435 (435)
9 PRK09053 3-carboxy-cis,cis-muc 94.8 0.01 2.3E-07 49.1 0.6 43 52-96 399-443 (452)
10 COG0015 PurB Adenylosuccinate 94.6 0.0069 1.5E-07 51.2 -0.9 74 17-95 354-434 (438)
11 PRK08540 adenylosuccinate lyas 93.1 0.022 4.8E-07 47.1 -0.4 39 57-95 399-439 (449)
12 cd01597 pCLME prokaryotic 3-ca 91.9 0.052 1.1E-06 44.6 0.2 59 37-95 372-433 (437)
13 PRK06390 adenylosuccinate lyas 91.7 0.068 1.5E-06 44.4 0.8 74 19-95 360-437 (451)
14 PRK08937 adenylosuccinate lyas 91.4 0.1 2.2E-06 38.4 1.4 31 57-87 184-216 (216)
15 cd01359 Argininosuccinate_lyas 88.5 0.072 1.6E-06 43.7 -1.6 77 19-96 340-427 (435)
16 COG0015 PurB Adenylosuccinate 85.9 0.35 7.5E-06 41.1 1.0 31 2-32 168-198 (438)
17 PRK09285 adenylosuccinate lyas 81.8 0.37 8E-06 40.5 -0.5 35 58-96 418-455 (456)
18 PRK06705 argininosuccinate lya 63.1 0.97 2.1E-05 38.4 -2.4 59 37-95 388-462 (502)
19 PF10415 FumaraseC_C: Fumarase 59.1 3.4 7.4E-05 25.5 0.2 38 46-87 17-54 (55)
20 cd03302 Adenylsuccinate_lyase_ 57.3 7.5 0.00016 32.4 2.0 33 2-34 166-198 (436)
21 PRK00485 fumC fumarate hydrata 52.3 9.4 0.0002 32.1 1.8 39 46-88 424-462 (464)
22 PLN00134 fumarate hydratase; P 50.1 11 0.00023 31.8 1.8 38 46-87 416-453 (458)
23 TIGR00979 fumC_II fumarate hyd 47.1 13 0.00028 31.4 1.8 38 46-87 421-458 (458)
24 TIGR00838 argH argininosuccina 38.2 7.7 0.00017 32.3 -0.8 60 36-95 376-445 (455)
25 TIGR00839 aspA aspartate ammon 37.5 13 0.00029 31.5 0.5 29 58-88 432-460 (468)
26 PRK06390 adenylosuccinate lyas 37.2 19 0.0004 30.1 1.3 27 2-28 172-198 (451)
27 PRK12425 fumarate hydratase; P 36.7 22 0.00047 30.2 1.6 39 46-88 422-460 (464)
28 PRK14515 aspartate ammonia-lya 30.1 34 0.00073 29.3 1.7 33 52-88 436-468 (479)
29 PRK08540 adenylosuccinate lyas 23.4 46 0.001 27.7 1.4 27 2-28 173-199 (449)
30 PRK12308 bifunctional arginino 23.0 11 0.00024 32.6 -2.5 73 20-95 363-447 (614)
31 PRK13353 aspartate ammonia-lya 22.9 34 0.00073 29.0 0.5 27 59-87 435-461 (473)
32 PRK08665 ribonucleotide-diphos 22.6 48 0.001 30.0 1.4 25 11-35 131-160 (752)
33 cd00236 FinO_conjug_rep FinO b 21.4 39 0.00084 25.0 0.5 27 54-80 62-88 (146)
34 PF04940 BLUF: Sensors of blue 21.3 46 0.001 22.1 0.8 14 57-70 58-71 (93)
35 KOG4334|consensus 20.4 52 0.0011 29.6 1.1 23 16-38 454-476 (650)
No 1
>KOG2700|consensus
Probab=99.04 E-value=7.5e-11 Score=99.45 Aligned_cols=52 Identities=40% Similarity=0.744 Sum_probs=49.5
Q ss_pred chHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCccccccchhhhcc
Q psy14322 45 SPRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 45 ~~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
.+|..||++|++||+++|++.|++|.+++||++.++||.+|+|||++|+++|
T Consensus 406 ~a~~~v~~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~gra~dQie~~ 457 (481)
T KOG2700|consen 406 QAAQVVKQEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFTGRAVDQIEKF 457 (481)
T ss_pred HHHHHHHHhcCCcHHHHHhcccccccchHHHHHhhccchhcccccHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999987
No 2
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=98.07 E-value=2.4e-07 Score=60.39 Aligned_cols=41 Identities=37% Similarity=0.501 Sum_probs=36.6
Q ss_pred CChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 56 ENDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 56 ~NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
.++|.+.|.+||.+. ++.++|++++||..|+|.|+++|+++
T Consensus 38 ~~~l~e~l~~d~~i~~~ls~~el~~l~dp~~ylg~~~~i~~rv 80 (81)
T PF10397_consen 38 GRDLREVLLADPEIAAYLSEEELEELFDPESYLGNADEIVDRV 80 (81)
T ss_dssp TS-HHHHHCTTHHHHTTSHHHHHHHHT-GGGGCTTHHHHHHHH
T ss_pred CCCHHHHHHCCHHHHhHCCHHHHHhhcCHHHHHhhHHHHHHHH
Confidence 578999999999998 89999999999999999999999875
No 3
>KOG2700|consensus
Probab=97.90 E-value=5.3e-06 Score=70.51 Aligned_cols=36 Identities=56% Similarity=0.809 Sum_probs=33.0
Q ss_pred CCHHHHHHHHhhcccccCCCchhcHHHHHHhhCCCc
Q psy14322 1 MDEQAISRARDELRFRGVKGTTGTQASFLELFNDIT 36 (97)
Q Consensus 1 ~d~~~l~~~~~~~~~rG~KGt~Gtqasf~elf~~~~ 36 (97)
+|++-+.++..++++||+||||||||||..+|.|+.
T Consensus 178 ~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~ 213 (481)
T KOG2700|consen 178 RDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDM 213 (481)
T ss_pred HHHHHHHHhhhhhhccccccchhhHHHHHHhhcccH
Confidence 468889999999999999999999999999999953
No 4
>PRK08470 adenylosuccinate lyase; Provisional
Probab=96.62 E-value=0.00033 Score=58.07 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=37.5
Q ss_pred CCCChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhc
Q psy14322 54 GKENDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVD 95 (97)
Q Consensus 54 G~~NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~e 95 (97)
+.+|+|++.|.+||.+. ++.++|++++||..|+|.|+..|++
T Consensus 396 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~~dp~~~~g~~~~~~~~ 439 (442)
T PRK08470 396 KGESLFLQALLNDEDLRKSLSEEEIRACFDYSYYTKNVDAIFKR 439 (442)
T ss_pred ccHHHHHHHHhcCHHhHhcCCHHHHHHHhCHHHHHhhHHHHHHH
Confidence 44589999999999884 7889999999999999999999876
No 5
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=96.54 E-value=0.0012 Score=54.55 Aligned_cols=46 Identities=48% Similarity=0.913 Sum_probs=39.1
Q ss_pred CcchHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 43 PFSPRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 43 ~~~~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
.|.+...++++|...+|.+.|.+||.+..++++|++++||..|+||
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~dp~~~~g~ 436 (436)
T cd03302 391 SHQAAAVVKQEGGDNDLIERIKNDAYFKPIWDELDALLDPKTFIGR 436 (436)
T ss_pred HHHHHHHhhcccCCCCHHHHHhcCCCcCCCHHHHHHHhCHHhhhCc
Confidence 4455556677777899999999999987788889999999999997
No 6
>PRK07380 adenylosuccinate lyase; Provisional
Probab=96.38 E-value=0.0012 Score=54.75 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=50.6
Q ss_pred CchhcHHHHHHhhCCCcceeecCCcchHHHHHhcC--CCChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhc
Q psy14322 20 GTTGTQASFLELFNDITLQFATSPFSPRSRVKQHG--KENDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVD 95 (97)
Q Consensus 20 Gt~Gtqasf~elf~~~~~~~~~~~~~~a~~VK~eG--~~NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~e 95 (97)
|-.-++.-.+.|-.. -+-|-+.--++.+.+++.- ..++|.+.+.+||.+. ++++||++++||..|+|.|+..|++
T Consensus 350 g~~~ae~~~~~Lv~~-gl~r~~Ah~~V~~~~~~a~~~~~~~l~e~l~~~~~~~~~l~~~~l~~~~dp~~ylg~~~~~~~~ 428 (431)
T PRK07380 350 GVVFSQRVLLALVEK-GMSREEAYRLVQKNAHTAWNTEGGNFRANLEADPEVTQLLSAAELADCFDPQLHLKNLDVIYQR 428 (431)
T ss_pred ChHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHcChHhhhcCCHHHHHHhhCHHHHhcchHHHHHH
Confidence 333344444444442 2444444334444443311 1378999999999884 7889999999999999999999876
Q ss_pred c
Q psy14322 96 V 96 (97)
Q Consensus 96 F 96 (97)
.
T Consensus 429 ~ 429 (431)
T PRK07380 429 L 429 (431)
T ss_pred h
Confidence 4
No 7
>PRK07492 adenylosuccinate lyase; Provisional
Probab=95.58 E-value=0.0037 Score=51.93 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=35.6
Q ss_pred ChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhc
Q psy14322 57 NDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVD 95 (97)
Q Consensus 57 NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~e 95 (97)
.+|.+.|.+||.+. ++++||++++||..|+|.|+++|++
T Consensus 390 ~~l~e~l~~~~~~~~~l~~~el~~~~dp~~ylg~~~~~~~~ 430 (435)
T PRK07492 390 GDFLEELKADPEVRAALSEEEIEELFDLGYHTKHVDTIFKR 430 (435)
T ss_pred CCHHHHHhCCHHhHhcCCHHHHHHHhCHHHHhcchHHHHHH
Confidence 67999999999884 7889999999999999999999876
No 8
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=94.91 E-value=0.01 Score=48.77 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=43.1
Q ss_pred ceeecCCcchHHHHHhc-C-CCChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 37 LQFATSPFSPRSRVKQH-G-KENDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 37 ~~~~~~~~~~a~~VK~e-G-~~NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
+-|...--++++.++.. . ...+|.+.+.+++.+. ++.++|+.++||.+|+|.|+++|+++
T Consensus 372 ~g~~~Ah~~v~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a~~~~~~~ 435 (435)
T TIGR00928 372 MGREEAYEIVRELAMGAAEVDEPDLLEFLLADERITKYLKEEELAELLDPETYIGNAREIVERV 435 (435)
T ss_pred CChhhHHHHHHHHHHHHHHcccccHHHHHhhCccchhhcCHHHHHHcCCHHHHhChHHHHHHhC
Confidence 44444334444445531 1 2256999999998665 78899999999999999999999864
No 9
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=94.77 E-value=0.01 Score=49.15 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=35.6
Q ss_pred hcCCCChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 52 QHGKENDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 52 ~eG~~NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
++|. ++.+.+.+|+.+. +++++|+.++||..|+|.|+.+|+++
T Consensus 399 ~~g~--~~~~~~~~~~~~~~~l~~~~l~~~l~P~~~~g~~~~~~~~~ 443 (452)
T PRK09053 399 AEGR--HLRDVLAEDPQVSAHLSPAALDRLLDPAHYLGQAHAWVDRV 443 (452)
T ss_pred HHCC--CHHHHHHhChhhhccCCHHHHHHHcCHHHHhcchHHHHHHH
Confidence 3454 5889998887663 67899999999999999999998864
No 10
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.0069 Score=51.24 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=49.5
Q ss_pred cCCCchhcHHHHHHhhC-CCcceee-----cCCcchHHHHHhcCCCChHHHHHhcCCCCC-CCcchhccccCcCcccccc
Q psy14322 17 GVKGTTGTQASFLELFN-DITLQFA-----TSPFSPRSRVKQHGKENDLVDRIRADPYFA-PILNQMPTLLDPKSFYGRA 89 (97)
Q Consensus 17 G~KGt~Gtqasf~elf~-~~~~~~~-----~~~~~~a~~VK~eG~~NDLleRIaaD~~F~-l~~eeL~~iLdP~~F~GrA 89 (97)
.-+|-.-++.-.++|-. |..-|=| ...|.+.+..| +. +..+|.+++.++ ++++++++++||.+|+|+|
T Consensus 354 ~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~----~~-~~~~l~~~~v~~~~~~~~~~~~~dp~~y~G~a 428 (438)
T COG0015 354 LTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGK----EF-LELLLADERVTKYLSEEELLELLDPANYLGRA 428 (438)
T ss_pred hccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc----ch-HHHhccchhhhccCcHHHHHHcCCHHHHhhHH
Confidence 34566667777777766 4332222 22344444444 34 777777777777 6788899999999999999
Q ss_pred chhhhc
Q psy14322 90 PEQVVD 95 (97)
Q Consensus 90 peQV~e 95 (97)
.+.|++
T Consensus 429 ~~i~~r 434 (438)
T COG0015 429 DEIVER 434 (438)
T ss_pred HHHHHH
Confidence 988876
No 11
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=93.13 E-value=0.022 Score=47.11 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=33.0
Q ss_pred ChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhc
Q psy14322 57 NDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVD 95 (97)
Q Consensus 57 NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~e 95 (97)
.+|.+.+.+++.+. ++.++|++++||..|+|.||++|++
T Consensus 399 ~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~g~a~~~v~~ 439 (449)
T PRK08540 399 RHLKEVLLEDEEVMKYLTEEELEELLDPETYIGTAPEIVEN 439 (449)
T ss_pred CCHHHHHHhChhhhccCCHHHHHHHcCHHHhcCchHHHHHH
Confidence 46888888886553 6788999999999999999999875
No 12
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=91.86 E-value=0.052 Score=44.65 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=41.1
Q ss_pred ceeecCCcchHHHHHhcCCC-ChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhc
Q psy14322 37 LQFATSPFSPRSRVKQHGKE-NDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVD 95 (97)
Q Consensus 37 ~~~~~~~~~~a~~VK~eG~~-NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~e 95 (97)
+-|...-.++++.++..-.. .+|.+.+..+..+. ++.++|+.++||.+|+|.||++|++
T Consensus 372 i~~~~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~v~~a~~~~~~ 433 (437)
T cd01597 372 LGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDEELDALLDPANYLGSAPALVDR 433 (437)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhccCCHHHHHHhcCHHHHhcchHHHHHH
Confidence 44554444555444432121 35888887876552 5788999999999999999999876
No 13
>PRK06390 adenylosuccinate lyase; Provisional
Probab=91.74 E-value=0.068 Score=44.41 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=44.0
Q ss_pred CCchhcHHHHHHhhCCCcceeecCCcchHHHHH---hcCCCChHHHHHhcCCCCC-CCcchhccccCcCccccccchhhh
Q psy14322 19 KGTTGTQASFLELFNDITLQFATSPFSPRSRVK---QHGKENDLVDRIRADPYFA-PILNQMPTLLDPKSFYGRAPEQVV 94 (97)
Q Consensus 19 KGt~Gtqasf~elf~~~~~~~~~~~~~~a~~VK---~eG~~NDLleRIaaD~~F~-l~~eeL~~iLdP~~F~GrApeQV~ 94 (97)
+|.+-+.+-.+.|-. ..+-|-..--++++.++ ++|++ |-+.+..+.... ++.++|++++||.+|+|.||++|+
T Consensus 360 ~~~~~se~la~~L~~-~G~~~~~Ah~~v~~~~~~a~~~g~~--l~~~~~~~~~~~~l~~~~l~~~ldP~~~i~~a~~~v~ 436 (451)
T PRK06390 360 DDSIMSESIVRALTL-SGMPRQDAHEFVRRASMEARSNGKS--LKSSLIEAGILKYIDEKTLDRAMDPANFIGQAPSICD 436 (451)
T ss_pred cchhhHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCCC--HHHHHHhChhhhcCCHHHHHHhcCHHHHhhhhHHHHH
Confidence 345444444444443 22444444444555444 33433 556555552223 467789999999999999999997
Q ss_pred c
Q psy14322 95 D 95 (97)
Q Consensus 95 e 95 (97)
+
T Consensus 437 ~ 437 (451)
T PRK06390 437 N 437 (451)
T ss_pred H
Confidence 5
No 14
>PRK08937 adenylosuccinate lyase; Provisional
Probab=91.38 E-value=0.1 Score=38.40 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=27.5
Q ss_pred ChHHHHHhcCCCC--CCCcchhccccCcCcccc
Q psy14322 57 NDLVDRIRADPYF--APILNQMPTLLDPKSFYG 87 (97)
Q Consensus 57 NDLleRIaaD~~F--~l~~eeL~~iLdP~~F~G 87 (97)
.++.+.+..|+.+ .++.++|+.++||..|+|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~vg 216 (216)
T PRK08937 184 KDLRELLEADERFTKQLTKEELDELFDPEAFVG 216 (216)
T ss_pred CCHHHHHHhChHhHhcCCHHHHHHHhCHHhhcC
Confidence 5699999999877 578889999999999998
No 15
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=88.51 E-value=0.072 Score=43.71 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=42.6
Q ss_pred CCchhcHHHHHHhhCCCcceeecCCcchHHHHH---hcCCC-ChHHHHHhcCCCCCCCcchhccccCcCccc-------c
Q psy14322 19 KGTTGTQASFLELFNDITLQFATSPFSPRSRVK---QHGKE-NDLVDRIRADPYFAPILNQMPTLLDPKSFY-------G 87 (97)
Q Consensus 19 KGt~Gtqasf~elf~~~~~~~~~~~~~~a~~VK---~eG~~-NDLleRIaaD~~F~l~~eeL~~iLdP~~F~-------G 87 (97)
+|..-+.+-...|-....+-|-..--.|++.++ ++|++ ++++..... ....++.++|+.++||..|+ |
T Consensus 340 ~~~~~a~~l~~~l~~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~-~~~~l~~~~l~~~ldp~~~~~~r~~~Gg 418 (435)
T cd01359 340 AGFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLAELQ-AISPLFEEDVREALDPENSVERRTSYGG 418 (435)
T ss_pred cCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHHHHH-hhcccCHHHHHHhCCHHHHHHhccCCCC
Confidence 343333343344433122444333334444333 34543 454332211 23457889999999999999 7
Q ss_pred ccchhhhcc
Q psy14322 88 RAPEQVVDV 96 (97)
Q Consensus 88 rApeQV~eF 96 (97)
.||+||+++
T Consensus 419 ~~~~~~~~~ 427 (435)
T cd01359 419 TAPAEVREQ 427 (435)
T ss_pred CCHHHHHHH
Confidence 899999764
No 16
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=85.91 E-value=0.35 Score=41.14 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.8
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHHHHhh
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASFLELF 32 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf~elf 32 (97)
+++-|+++..++...+++|++||.|+|-++.
T Consensus 168 ~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~~~~ 198 (438)
T COG0015 168 HLERLEEAEERIIVGKIGGAVGTLAALGDLG 198 (438)
T ss_pred HHHHHHHHHhhhhhhccccchhhHhhcCchh
Confidence 3567888888899999999999999998855
No 17
>PRK09285 adenylosuccinate lyase; Provisional
Probab=81.83 E-value=0.37 Score=40.53 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=29.0
Q ss_pred hHHHH---HhcCCCCCCCcchhccccCcCccccccchhhhcc
Q psy14322 58 DLVDR---IRADPYFAPILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 58 DLleR---IaaD~~F~l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
+|.+. |..||... ++| .++||..|+|-|++.|++.
T Consensus 418 ~~~e~~~~l~~~~~~~---~~l-~~~~p~~ylg~a~~~~~~~ 455 (456)
T PRK09285 418 ALREFIDGLDLPEEAK---ARL-KALTPANYIGLAAELADEI 455 (456)
T ss_pred CHHHHHHHhcCCHhHH---HHH-HcCCHHHHHhhHHHHHHhh
Confidence 36666 88888765 789 9999999999999998764
No 18
>PRK06705 argininosuccinate lyase; Provisional
Probab=63.06 E-value=0.97 Score=38.44 Aligned_cols=59 Identities=8% Similarity=0.171 Sum_probs=36.8
Q ss_pred ceeecCCcchHHHHHhcCCCC-hHHHHHhcCCC--------CCCCcchhccccCcCcccc-------ccchhhhc
Q psy14322 37 LQFATSPFSPRSRVKQHGKEN-DLVDRIRADPY--------FAPILNQMPTLLDPKSFYG-------RAPEQVVD 95 (97)
Q Consensus 37 ~~~~~~~~~~a~~VK~eG~~N-DLleRIaaD~~--------F~l~~eeL~~iLdP~~F~G-------rApeQV~e 95 (97)
+-|-+.--+|++.|+.....+ +|-+....|+. ..++.++|..++||..|+| .||++|.+
T Consensus 388 l~fr~Ah~iV~~~v~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~Gg~~p~~v~~ 462 (502)
T PRK06705 388 IPFRHAHHAASVIANMSLEQKKELHELCFKDVNIYLQEKFKIQLLEKEWEEIISPEAFIQKRNVYGGPSKKEMER 462 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHhhHHHHHhhhhhhhhhcCCHHHHHHHCCHHHHHhhccCCCCCCHHHHHH
Confidence 556565566666555432222 34444444443 2256788999999999998 77877753
No 19
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=59.09 E-value=3.4 Score=25.53 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=23.2
Q ss_pred hHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCcccc
Q psy14322 46 PRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYG 87 (97)
Q Consensus 46 ~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~G 87 (97)
+|+.-..+|+. +.-+.-+.-+ ++.++++++|||.+.|.
T Consensus 17 iAk~A~~~g~s---vre~v~~~g~-lt~ee~d~ll~p~~mt~ 54 (55)
T PF10415_consen 17 IAKEALAEGRS---VREVVLEEGL-LTEEELDELLDPERMTN 54 (55)
T ss_dssp HHHHHHHHT-----HHHHHHHTTS-S-HHHHHHHTSHHHHTT
T ss_pred HHHHHHHcCCC---HHHHHHHcCC-CCHHHHHHHcCHHHcCC
Confidence 44555556776 4444444332 78999999999988764
No 20
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=57.30 E-value=7.5 Score=32.35 Aligned_cols=33 Identities=70% Similarity=1.100 Sum_probs=26.6
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHHHHhhCC
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASFLELFND 34 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf~elf~~ 34 (97)
|++.|..+..++...|.-||+||.|++...|.+
T Consensus 166 ~~~RL~~~~~~~~~~~~~GavGt~a~~~~~~~~ 198 (436)
T cd03302 166 DLRNLERLRDDLRFRGVKGTTGTQASFLDLFEG 198 (436)
T ss_pred HHHHHHHHHHHHHhhcCcChhhhhHHHHhcCCc
Confidence 456778888888888999999999988666654
No 21
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=52.27 E-value=9.4 Score=32.08 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=27.8
Q ss_pred hHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 46 PRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 46 ~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
+++...++|.+ |.+.+.+. -.++.++|++++||.+|+|.
T Consensus 424 ~~~~a~~~g~~--l~~~~~~~--~~l~~~~l~~~ldP~~~~~~ 462 (464)
T PRK00485 424 IAKKAHKEGLT--LKEAALEL--GYLTEEEFDRWVDPEKMTGP 462 (464)
T ss_pred HHHHHHHcCCC--HHHHHHHc--CCCCHHHHHHHcCHHHhcCC
Confidence 44455556654 66666663 34678899999999999994
No 22
>PLN00134 fumarate hydratase; Provisional
Probab=50.05 E-value=11 Score=31.83 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=27.5
Q ss_pred hHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCcccc
Q psy14322 46 PRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYG 87 (97)
Q Consensus 46 ~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~G 87 (97)
++++..++|.+ |.+.+.+. -.++.+||++++||.+|+|
T Consensus 416 ~~~~a~~~g~~--l~e~~~~~--~~l~~~el~~~ldP~~~~~ 453 (458)
T PLN00134 416 VAKKAHKEGTT--LKEAALKL--GVLTAEEFDELVVPEKMTG 453 (458)
T ss_pred HHHHHHHhCCC--HHHHHHhc--CCCCHHHHHHHcCHHHhcC
Confidence 45555556654 66666662 3467899999999999998
No 23
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=47.12 E-value=13 Score=31.40 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=27.0
Q ss_pred hHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCcccc
Q psy14322 46 PRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYG 87 (97)
Q Consensus 46 ~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~G 87 (97)
++++..++|.+ |.+.+.+. -.++.++|+.++||..|+|
T Consensus 421 ~~~~a~~~~~~--~~e~~~~~--~~l~~~el~~~ldp~~~~~ 458 (458)
T TIGR00979 421 IAKKAHKEGIT--LKEAALEL--GLLSEEEFDEWVVPEQMVG 458 (458)
T ss_pred HHHHHHHhCCC--HHHHHHHc--CCCCHHHHHHHcCHHHhcC
Confidence 45555556655 66666552 3467889999999999987
No 24
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=38.15 E-value=7.7 Score=32.30 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=35.5
Q ss_pred cceeecCCcchHHHHHhcCCCC-hHHHHHhcCCC--CCCCcchhccccCcCccc-------cccchhhhc
Q psy14322 36 TLQFATSPFSPRSRVKQHGKEN-DLVDRIRADPY--FAPILNQMPTLLDPKSFY-------GRAPEQVVD 95 (97)
Q Consensus 36 ~~~~~~~~~~~a~~VK~eG~~N-DLleRIaaD~~--F~l~~eeL~~iLdP~~F~-------GrApeQV~e 95 (97)
.+-|-+.-.+|++.++..-..+ +|-+....++. -.+..+++++++||..|+ |.||++|.+
T Consensus 376 g~~~r~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~Gg~~~~~~~~ 445 (455)
T TIGR00838 376 GVPFREAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVYEALDPESSVEKRDAKGGTAPEEVLQ 445 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCHHHHHHHCCHHHHHHhccCCCCCCHHHHHH
Confidence 3455555555565555322222 35555555543 224567799999999988 477877753
No 25
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=37.53 E-value=13 Score=31.51 Aligned_cols=29 Identities=0% Similarity=0.004 Sum_probs=22.9
Q ss_pred hHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 58 DLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 58 DLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
+|-+.+.++ -.++.++|+.++||.+|++.
T Consensus 432 ~l~e~~~~~--~~l~~~~l~~~ldP~~~v~~ 460 (468)
T TIGR00839 432 SVREVVLEK--GLLTEEELDDIFSVENLMHP 460 (468)
T ss_pred CHHHHHHhc--CCCCHHHHHHHcCHHHHcCC
Confidence 366766666 44678899999999999974
No 26
>PRK06390 adenylosuccinate lyase; Provisional
Probab=37.16 E-value=19 Score=30.13 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.3
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|++.|...++++......||+||.+++
T Consensus 172 ~~~RL~~~~~r~~~~~~~gavGt~a~~ 198 (451)
T PRK06390 172 HLDRLTEMGDRAFAGKVLGPVGTGAAL 198 (451)
T ss_pred HHHHHHHHHHHhhhhccCChhcChhhC
Confidence 466778888888888889999999876
No 27
>PRK12425 fumarate hydratase; Provisional
Probab=36.73 E-value=22 Score=30.15 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=26.7
Q ss_pred hHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 46 PRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 46 ~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
++++.-++|.+ |-+.+.+ .-.+++++|++++||..|+|.
T Consensus 422 ia~~a~~~g~~--l~e~~~~--~~~l~~~el~~~ldP~~~~~~ 460 (464)
T PRK12425 422 IAKKAYAEGTT--LREAALA--LGYLTDEQFDAWVRPENMLEA 460 (464)
T ss_pred HHHHHHHhCCC--HHHHHHh--cCCCCHHHHHHHcCHHHhcCC
Confidence 33444445655 5555554 244688999999999999985
No 28
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=30.06 E-value=34 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=24.0
Q ss_pred hcCCCChHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 52 QHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 52 ~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
++|.+ |-+.+.++ -.++++|+++++||.++|+.
T Consensus 436 ~~g~~--l~e~~~~~--~~l~~~el~~~ldP~~~~~~ 468 (479)
T PRK14515 436 ATGQS--VRELCVKN--GVLSQEDLELILDPFEMTHP 468 (479)
T ss_pred HhCCC--HHHHHHhc--CCCCHHHHHHhCCHHHcCCC
Confidence 34544 66666665 33678999999999999974
No 29
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=23.45 E-value=46 Score=27.67 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=21.4
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|.+.|..+++++......|++||.+++
T Consensus 173 ~~~rL~~~~~~~~~~~lGgavGt~~a~ 199 (449)
T PRK08540 173 HLERLEQLKPRVCVGQMTGAVGTQAAF 199 (449)
T ss_pred HHHHHHHHHHhhheccccccccchhhC
Confidence 456778888888888888899998754
No 30
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=22.97 E-value=11 Score=32.57 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=40.0
Q ss_pred CchhcHHHHHHhhCCCcceeecCCcchHHHHHh---cCCCChHHHHHhcC-CCCC--CCc-----chhccccCcCccccc
Q psy14322 20 GTTGTQASFLELFNDITLQFATSPFSPRSRVKQ---HGKENDLVDRIRAD-PYFA--PIL-----NQMPTLLDPKSFYGR 88 (97)
Q Consensus 20 Gt~Gtqasf~elf~~~~~~~~~~~~~~a~~VK~---eG~~NDLleRIaaD-~~F~--l~~-----eeL~~iLdP~~F~Gr 88 (97)
|-.-..+-..+|-. ..+-|.+.--++++.|+. +|.+ |.+.+..+ +.+. ++. .+++..++|..++|-
T Consensus 363 g~~~a~~la~~L~~-~g~~~r~Ah~~v~~~v~~a~~~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 439 (614)
T PRK12308 363 GYANATELADYLVA-KGIPFREAHHIVGVAVVGAIAKGCA--LEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCALGG 439 (614)
T ss_pred CHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCCC--hhhCCHHHHHHhhhhhhHHHHHhCCHHHHHHhccCCCC
Confidence 33333333334433 246666666667765543 3432 33333222 1111 223 457888999999998
Q ss_pred -cchhhhc
Q psy14322 89 -APEQVVD 95 (97)
Q Consensus 89 -ApeQV~e 95 (97)
||++|++
T Consensus 440 ~~~~~v~~ 447 (614)
T PRK12308 440 VSPEQVAY 447 (614)
T ss_pred CCHHHHHH
Confidence 9999864
No 31
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=22.87 E-value=34 Score=28.98 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCCCCcchhccccCcCcccc
Q psy14322 59 LVDRIRADPYFAPILNQMPTLLDPKSFYG 87 (97)
Q Consensus 59 LleRIaaD~~F~l~~eeL~~iLdP~~F~G 87 (97)
|-+.+..+. .++.++++.++||..|++
T Consensus 435 l~e~~~~~~--~~~~~el~~~ldp~~~v~ 461 (473)
T PRK13353 435 VRELALENG--LLSEEELDLILDPFRMTH 461 (473)
T ss_pred HHHHHhhcC--CCCHHHHHHHcCHHHhcC
Confidence 666666663 356889999999999997
No 32
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=22.56 E-value=48 Score=29.95 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=18.4
Q ss_pred hhcccccC--CCchhcH---HHHHHhhCCC
Q psy14322 11 DELRFRGV--KGTTGTQ---ASFLELFNDI 35 (97)
Q Consensus 11 ~~~~~rG~--KGt~Gtq---asf~elf~~~ 35 (97)
++||-+|. ||+-|++ -|||.+|+..
T Consensus 131 S~lRp~G~~v~~~~g~asGpvsfm~~~d~~ 160 (752)
T PRK08665 131 SRLRPKNDRVGSTGGVASGPVSFMRVFDAA 160 (752)
T ss_pred cccCCCCCcccCCCCCCCCchhHHHHHHHH
Confidence 57788884 6777764 5999999843
No 33
>cd00236 FinO_conjug_rep FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which encodes the proteins responsible for conjugative transfer of this plasmid from host to recipient Escherichia coli cells; antisense RNA, FinP is thought to interact with traJ mRNA to occlude its ribosome binding site, blocking traJ translation and thereby inhibiting transcription of the tra operon; FinO protects FinP against degradation by binding to FinP and sterically blocking the cellular endonuclease RNase E; FinO also also binds to the complementary stem-loop structures in traJ mRNA and promotes duplex formation between FinP and traJ RNA in vitro; this domain contains two independent RNA binding regions
Probab=21.39 E-value=39 Score=24.99 Aligned_cols=27 Identities=7% Similarity=0.288 Sum_probs=23.8
Q ss_pred CCCChHHHHHhcCCCCCCCcchhcccc
Q psy14322 54 GKENDLVDRIRADPYFAPILNQMPTLL 80 (97)
Q Consensus 54 G~~NDLleRIaaD~~F~l~~eeL~~iL 80 (97)
|...||++.|+.+|..++++.+|...|
T Consensus 62 GI~~di~~dl~~~~~~~lsk~~Lr~AL 88 (146)
T cd00236 62 GIKDGILQDVAQHPNIPLTHEELRCAV 88 (146)
T ss_pred ChHHHHHHHHHhCccCCCCHHHHHHHH
Confidence 777999999999899999999997765
No 34
>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria. The BLUF domain is involved in sensing blue-light (and possibly redox) using FAD and is similar to the flavin-binding PAS domains and cryptochromes. The predicted secondary structure reveals that the BLUF domain is a novel FAD-binding fold [].; PDB: 2IYG_A 2IYI_B 1X0P_A 2HFN_G 3MZI_A 2HFO_E 3GFZ_A 3GG1_B 2KB2_A 3GFY_A ....
Probab=21.26 E-value=46 Score=22.06 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=11.0
Q ss_pred ChHHHHHhcCCCCC
Q psy14322 57 NDLVDRIRADPYFA 70 (97)
Q Consensus 57 NDLleRIaaD~~F~ 70 (97)
+.|.+||.+||+=.
T Consensus 58 ~~l~~rI~~D~RH~ 71 (93)
T PF04940_consen 58 DALFERIKQDPRHS 71 (93)
T ss_dssp HHHHHHHHT-TTEE
T ss_pred HHHHHHHhcCCCcC
Confidence 78999999999843
No 35
>KOG4334|consensus
Probab=20.37 E-value=52 Score=29.57 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=19.8
Q ss_pred ccCCCchhcHHHHHHhhCCCcce
Q psy14322 16 RGVKGTTGTQASFLELFNDITLQ 38 (97)
Q Consensus 16 rG~KGt~Gtqasf~elf~~~~~~ 38 (97)
-|.-|+-|+|++|+|+|+.+.+.
T Consensus 454 d~k~~~~~k~q~~le~F~~I~Ie 476 (650)
T KOG4334|consen 454 DGKVEEDGKQQGFLELFKKIKIE 476 (650)
T ss_pred cccccccccchhHHHHhhccccc
Confidence 36678999999999999998863
Done!