Query psy14322
Match_columns 97
No_of_seqs 140 out of 442
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 16:54:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j91_A Adenylosuccinate lyase; 98.1 3.9E-07 1.3E-11 75.0 -0.8 53 44-96 430-482 (503)
2 1yis_A Adenylosuccinate lyase; 97.5 1.1E-05 3.8E-10 65.6 -1.1 51 43-96 403-454 (478)
3 1c3c_A Protein (adenylosuccina 96.0 0.00087 3E-08 53.7 -0.8 59 38-96 366-427 (429)
4 2pfm_A Adenylosuccinate lyase; 95.7 0.0015 5.2E-08 52.7 -0.5 40 57-96 398-439 (444)
5 1re5_A 3-carboxy-CIS,CIS-mucon 95.4 0.0018 6.1E-08 52.2 -1.1 40 57-96 400-441 (450)
6 3c8t_A Fumarate lyase; structu 95.1 0.0017 5.7E-08 52.5 -2.0 40 57-96 398-439 (451)
7 1q5n_A 3-carboxy-CIS,CIS-mucon 94.9 0.0035 1.2E-07 50.5 -0.6 40 57-96 404-445 (454)
8 2qga_B Adenylosuccinate lyase; 94.9 0.0031 1.1E-07 51.1 -1.0 39 57-96 417-457 (465)
9 2j91_A Adenylosuccinate lyase; 93.8 0.036 1.2E-06 45.5 3.0 35 2-36 204-238 (503)
10 3bhg_A Adenylosuccinate lyase; 93.6 0.0088 3E-07 48.4 -0.9 36 57-96 420-458 (459)
11 1yis_A Adenylosuccinate lyase; 93.2 0.053 1.8E-06 44.0 3.0 35 2-36 178-212 (478)
12 2e9f_A Argininosuccinate lyase 91.4 0.033 1.1E-06 45.1 -0.2 27 67-96 418-451 (462)
13 1k7w_A Delta 2 crystallin; eye 90.6 0.036 1.2E-06 45.0 -0.7 49 43-96 390-453 (468)
14 1tj7_A Argininosuccinate lyase 90.3 0.036 1.2E-06 44.9 -1.0 42 53-96 398-448 (457)
15 4hgv_A Fumarase C, fumarate hy 88.7 0.24 8.2E-06 40.8 2.8 38 48-89 458-495 (495)
16 2ptr_A Adenylosuccinate lyase; 76.0 0.48 1.6E-05 38.3 -0.3 37 58-96 418-455 (462)
17 4adm_A Fumarase C, fumarate hy 61.2 2.7 9.2E-05 34.7 1.1 36 52-89 452-489 (495)
18 3gtd_A Fumarase C, fumarate hy 58.6 5 0.00017 33.1 2.4 35 49-87 448-482 (482)
19 4eei_A Adenylosuccinate lyase; 49.7 3.8 0.00013 32.9 0.2 27 2-28 164-190 (438)
20 2fel_A 3-carboxy-CIS,CIS-mucon 49.1 4.9 0.00017 31.4 0.8 27 2-28 178-204 (359)
21 3e04_A Fumarase, fumarate hydr 45.6 9.5 0.00032 31.5 2.0 33 52-88 457-489 (490)
22 4eei_A Adenylosuccinate lyase; 43.8 5 0.00017 32.2 0.1 30 65-96 399-429 (438)
23 1yfm_A Fumarase, YFUM; lyase, 37.9 17 0.00059 29.7 2.4 33 52-88 455-487 (488)
24 1jsw_A L-aspartase, L-aspartat 37.0 15 0.00052 29.7 1.9 30 58-89 437-466 (478)
25 1fur_A Fumarase C, FUMC; hydro 36.5 18 0.00062 29.2 2.3 33 53-89 431-463 (467)
26 3c8t_A Fumarate lyase; structu 32.9 13 0.00046 29.6 1.0 27 2-28 174-200 (451)
27 1jjr_A KU70, thyroid autoantig 32.6 9.3 0.00032 27.3 -0.0 66 24-89 48-119 (151)
28 1q5n_A 3-carboxy-CIS,CIS-mucon 28.8 17 0.00059 29.0 1.0 27 2-28 180-206 (454)
29 3r6q_A Aspartase; aspartate am 28.0 14 0.00048 30.0 0.3 33 52-88 430-462 (468)
30 2pfm_A Adenylosuccinate lyase; 27.2 14 0.00049 29.5 0.2 27 2-28 175-201 (444)
31 4i1o_B LEPB; GAP, rabgap, hydr 27.2 15 0.00053 28.9 0.4 35 54-91 249-283 (302)
32 1re5_A 3-carboxy-CIS,CIS-mucon 27.0 19 0.00066 28.6 1.0 27 2-28 176-202 (450)
33 1y8x_B Ubiquitin-activating en 24.5 34 0.0012 22.5 1.6 23 57-79 18-40 (98)
34 1nov_D Nodamura virus coat pro 24.4 24 0.00082 20.7 0.8 14 16-29 19-32 (44)
35 1c3c_A Protein (adenylosuccina 24.1 16 0.00053 29.0 -0.1 27 2-28 163-189 (429)
36 1dof_A Adenylosuccinate lyase; 23.9 22 0.00076 28.0 0.8 25 4-28 167-191 (403)
37 2z2q_B Coat protein gamma; wil 23.0 27 0.00091 20.5 0.8 14 16-29 19-32 (44)
38 1f8v_D Mature capsid protein g 22.0 19 0.00065 20.8 0.0 14 16-29 19-32 (40)
39 4aeq_A Colicin-M immunity prot 21.9 34 0.0012 23.0 1.2 15 45-64 19-33 (98)
40 1yrx_A Hypothetical protein RS 20.2 25 0.00085 23.8 0.3 14 57-70 61-74 (121)
No 1
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=98.06 E-value=3.9e-07 Score=75.01 Aligned_cols=53 Identities=51% Similarity=0.804 Sum_probs=48.3
Q ss_pred cchHHHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCccccccchhhhcc
Q psy14322 44 FSPRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 44 ~~~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
+.+++.||+.+..|+|++++..||.|.+++++|++++||..|+|.||+||+++
T Consensus 430 ~~~g~~V~~~~~~~~l~e~l~~~~~~~l~~eel~~~ldp~~~~g~a~~~v~~~ 482 (503)
T 2j91_A 430 QQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRF 482 (503)
T ss_dssp HHHHHHHHHSCCCCCHHHHHHHCGGGHHHHTTHHHHTCGGGGSTTHHHHHHHH
T ss_pred HHhhhHHHHHHhcccHHHHHhcCcccCCCHHHHHHhcCHHHhCCcHHHHHHHH
Confidence 44478999989899999999999999888999999999999999999999864
No 2
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=97.46 E-value=1.1e-05 Score=65.60 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=32.8
Q ss_pred CcchHHHHHhcCCCChHHHHHhcCCCCCCCcchhcccc-CcCccccccchhhhcc
Q psy14322 43 PFSPRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLL-DPKSFYGRAPEQVVDV 96 (97)
Q Consensus 43 ~~~~a~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iL-dP~~F~GrApeQV~eF 96 (97)
.+.+++.|+++|.+ ++.++.|+.|.+++++|++++ ||..|+|.||+||+++
T Consensus 403 a~~~~~~v~~~g~~---~~~l~~~~~~~l~~~el~~~l~dp~~~~g~a~~~v~~~ 454 (478)
T 1yis_A 403 ALEAKQLQATQKVD---IRQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESF 454 (478)
T ss_dssp -------------------CCCTTTTSTTTHHHHHHHHHCGGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---HHHHhcCCCCCCCHHHHHHHHhCHHHHcCcHHHHHHHH
Confidence 34457778788887 888889999989999999999 9999999999999864
No 3
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=95.95 E-value=0.00087 Score=53.71 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=42.3
Q ss_pred eeecCCcchHHHHHhc-CCCChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 38 QFATSPFSPRSRVKQH-GKENDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 38 ~~~~~~~~~a~~VK~e-G~~NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
-|....-++++.+|.. ....+|.+.+.+++.+. ++++++++++||..|+|.|++||++|
T Consensus 366 g~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a~~~~~~~ 427 (429)
T 1c3c_A 366 TRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVDHIFERF 427 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCHHHHHHTCHHHHTTCCHHHHHHTTCTHHHHTTHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHhCChhhhccCCHHHHHHhCCHHHHhhhHHHHHHHH
Confidence 3333333334444432 22368999999996553 67889999999999999999999986
No 4
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=95.68 E-value=0.0015 Score=52.70 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=34.8
Q ss_pred ChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 57 NDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 57 NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
.+|.+.+.+++.+. +++++|++++||.+|+|.|++||++|
T Consensus 398 ~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a~~~~~~~ 439 (444)
T 2pfm_A 398 VQFKELVEADERITSKLTQEEINECFNYEHHMQHVDTIFERL 439 (444)
T ss_dssp CCHHHHHHTCHHHHTTSCHHHHHHHTCGGGGGTTHHHHHHHH
T ss_pred CCHHHHHhcchhhhccCCHHHHHHhCCHHHHHhHHHHHHHHH
Confidence 57999999986553 57889999999999999999999875
No 5
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=95.36 E-value=0.0018 Score=52.21 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=35.0
Q ss_pred ChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 57 NDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 57 NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
.+|.+.+.+++.+. +++++|++++||.+|+|.|++||+++
T Consensus 400 ~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a~~~~~~~ 441 (450)
T 1re5_A 400 RHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQARVWVARA 441 (450)
T ss_dssp CCHHHHHHTCHHHHHHSCHHHHHHHTCGGGCCTTHHHHHHHH
T ss_pred CCHHHHHHhChhhccCCCHHHHHHhcCHHHHhhhHHHHHHHH
Confidence 57999999996664 67889999999999999999999864
No 6
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=95.13 E-value=0.0017 Score=52.46 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=35.0
Q ss_pred ChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 57 NDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 57 NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
.+|.+.+.+++.+. ++.++|++++||..|+|.|++||++|
T Consensus 398 ~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~~~~~~~~~ 439 (451)
T 3c8t_A 398 TGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGSAGAMVDNV 439 (451)
T ss_dssp SCHHHHHTTCHHHHHHHCHHHHHHHTCGGGCCTTHHHHHHHH
T ss_pred CCHHHHHhcChhhhccCCHHHHHHhCCHHHHhchHHHHHHHH
Confidence 57999999986653 57889999999999999999999876
No 7
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=94.91 E-value=0.0035 Score=50.53 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=34.0
Q ss_pred ChHHHHHhcCCCCC--CCcchhccccCcCccccccchhhhcc
Q psy14322 57 NDLVDRIRADPYFA--PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 57 NDLleRIaaD~~F~--l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
.+|.+.+.+++.+. ++.++|++++||.+|+|.||++|+++
T Consensus 404 ~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~g~a~~~v~~~ 445 (454)
T 1q5n_A 404 KHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQDQIDAV 445 (454)
T ss_dssp CCHHHHHTTCHHHHTTCCHHHHHHHTCGGGGCTTHHHHHHHH
T ss_pred CCHHHHHhcchhhhcCCCHHHHHHhCCHHHHcCcHHHHHHHH
Confidence 57999998885543 57889999999999999999999864
No 8
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=94.88 E-value=0.0031 Score=51.14 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=30.9
Q ss_pred ChHHHHHhcCCC-CCC-CcchhccccCcCccccccchhhhcc
Q psy14322 57 NDLVDRIRADPY-FAP-ILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 57 NDLleRIaaD~~-F~l-~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
++|.+.+.+++. |.. .+++|. ++||..|+|.||+||++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~-~ldp~~y~G~a~~~v~~~ 457 (465)
T 2qga_B 417 KIMQEFIKTKCAFLPQDVVDQLL-ELTPATYTGYADYLAKNV 457 (465)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHH-HCCGGGCCTTHHHHHHTH
T ss_pred CCHHHHHHhchhcCCcchHHHHH-hcCHHHhCCcHHHHHHHH
Confidence 667888888762 432 247898 999999999999999875
No 9
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=93.77 E-value=0.036 Score=45.54 Aligned_cols=35 Identities=69% Similarity=1.014 Sum_probs=30.8
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHHHHhhCCCc
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASFLELFNDIT 36 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf~elf~~~~ 36 (97)
|++.|++++.+++..|..||+||.++|.+.|.++.
T Consensus 204 d~~RL~~~~~~l~~lg~gG~~GT~a~~~~~f~~D~ 238 (503)
T 2j91_A 204 DLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDD 238 (503)
T ss_dssp HHHHHHHHHHHCCBCCSCCTTSSCHHHHHHTTTCH
T ss_pred HHHHHHHHHHhhccccccccccchhhhccccCCch
Confidence 56778889999999999999999999999887643
No 10
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=93.61 E-value=0.0088 Score=48.42 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=30.3
Q ss_pred ChHHHHHhc---CCCCCCCcchhccccCcCccccccchhhhcc
Q psy14322 57 NDLVDRIRA---DPYFAPILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 57 NDLleRIaa---D~~F~l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
++|.+.|.+ ||. .+++|+ ++||..|+|.|++||++|
T Consensus 420 ~~l~~~l~~l~~~~~---~~~~l~-~~dp~~y~g~a~~~~~~~ 458 (459)
T 3bhg_A 420 ENLKKFIKTLSIPEE---AKAELM-KLTPETYTGLATQLVKAF 458 (459)
T ss_dssp HHHHHHHHTSCSCHH---HHHHHH-HCCGGGCCTTHHHHHHHC
T ss_pred ccHHHHHHhcCCCch---hHHHHH-hCCHHHHhCcHHHHHHhc
Confidence 689999988 443 257888 889999999999999987
No 11
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=93.15 E-value=0.053 Score=44.00 Aligned_cols=35 Identities=54% Similarity=0.825 Sum_probs=30.6
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHHHHhhCCCc
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASFLELFNDIT 36 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf~elf~~~~ 36 (97)
|++.|++.+.+++..|..||+||.++|.+.|.++.
T Consensus 178 d~~rL~~~~~~l~~lg~gg~~GT~a~~~~~f~~d~ 212 (478)
T 1yis_A 178 AFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDE 212 (478)
T ss_dssp HHHHHHHHHHHCCBCCSCTTTSSCHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHhcccchhccchhhhcccCcch
Confidence 56778888999999999999999999999887643
No 12
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=91.39 E-value=0.033 Score=45.15 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCCCCCcchhccccCcCccc-------cccchhhhcc
Q psy14322 67 PYFAPILNQMPTLLDPKSFY-------GRAPEQVVDV 96 (97)
Q Consensus 67 ~~F~l~~eeL~~iLdP~~F~-------GrApeQV~eF 96 (97)
+.|. +++++++||..|+ |+||+||+++
T Consensus 418 ~~l~---~~l~~~ldp~~~~~~r~~~gG~a~~~v~~~ 451 (462)
T 2e9f_A 418 PLFA---EDALPLLRLETAIHRRRSYGGTAPEAVRER 451 (462)
T ss_dssp TTCC---GGGGGGGSHHHHTTSCCSTTSSCHHHHHHH
T ss_pred hhhH---HHHHHhCCHHHHHhcCcCCCCCCHHHHHHH
Confidence 6663 7899999999999 9999999864
No 13
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=90.61 E-value=0.036 Score=45.04 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=33.3
Q ss_pred CcchHHHHH---hcCCCChHHHHHhcC-----CCCCCCcchhccccCcCccc-------cccchhhhcc
Q psy14322 43 PFSPRSRVK---QHGKENDLVDRIRAD-----PYFAPILNQMPTLLDPKSFY-------GRAPEQVVDV 96 (97)
Q Consensus 43 ~~~~a~~VK---~eG~~NDLleRIaaD-----~~F~l~~eeL~~iLdP~~F~-------GrApeQV~eF 96 (97)
--.+++.++ ++|.+ |.+.+.+| +.|. +++++++||..|+ |+||+||+++
T Consensus 390 y~~v~~~~~~a~~~g~~--l~e~~~~~~~~~~~~l~---~~~~~~ldp~~~~~~r~~~GG~a~~~v~~~ 453 (468)
T 1k7w_A 390 HTASGKAVHLAETKGIT--INKLSLEDLKSISPQFS---SDVSQVFNFVNSVEQYTALGGTAKSSVTTQ 453 (468)
T ss_dssp HHHHHHHHHHHHTTTCC--GGGCCHHHHHHHCTTCC---GGGGGGSCHHHHHTTCCSTTSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHhhH---HHHHHhCCHHHHHhcCCCCCCCCHHHHHHH
Confidence 334455555 34543 44444444 6663 7899999999999 9999999864
No 14
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=90.26 E-value=0.036 Score=44.91 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=30.1
Q ss_pred cCCCChHHHHHhcC-CCCC-CCcchhccccCcCccc-------cccchhhhcc
Q psy14322 53 HGKENDLVDRIRAD-PYFA-PILNQMPTLLDPKSFY-------GRAPEQVVDV 96 (97)
Q Consensus 53 eG~~NDLleRIaaD-~~F~-l~~eeL~~iLdP~~F~-------GrApeQV~eF 96 (97)
+|.+ |.+.+.+| +.+. +..+++++++||..++ |+||+||+++
T Consensus 398 ~g~~--l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~ 448 (457)
T 1tj7_A 398 QGKP--LEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQA 448 (457)
T ss_dssp HTCC--GGGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTCCSTTCCSHHHHHHH
T ss_pred HCcC--HHHHHHHHHHHHhhhcHHHHHHhCCHHHHHhccCCCCCCCHHHHHHH
Confidence 4543 44444455 4442 4577999999999888 9999999864
No 15
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=88.67 E-value=0.24 Score=40.80 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCcccccc
Q psy14322 48 SRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRA 89 (97)
Q Consensus 48 ~~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~GrA 89 (97)
+..-++|++ |.|-+..+.. ++++||++++||.+|||.|
T Consensus 458 k~A~~~g~~--lre~~~~~~~--ls~eeld~lldP~~~~gpA 495 (495)
T 4hgv_A 458 KTAHKNGTT--LREEAVGGGY--VTDEEFDAVVRPETMIGPA 495 (495)
T ss_dssp HHHHHHTCC--HHHHHHTTTS--SCHHHHHHHCCGGGSSSCC
T ss_pred HHHHHhCCC--HHHHHHHcCC--CCHHHHHHhCCHHHhcCCC
Confidence 333345765 6676666654 7899999999999999976
No 16
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=75.99 E-value=0.48 Score=38.27 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=27.5
Q ss_pred hHHHHHhcCCCCC-CCcchhccccCcCccccccchhhhcc
Q psy14322 58 DLVDRIRADPYFA-PILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 58 DLleRIaaD~~F~-l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
+|-+.+..-. |. .+.++|+ ++||..|+|.|+++|++.
T Consensus 418 ~l~e~~~~~~-~~~~~~~~l~-~ldp~~~~~~a~~~~~~~ 455 (462)
T 2ptr_A 418 GMKQFIDGLA-LPEEEKARLK-AMTPANYIGRAITMVDEL 455 (462)
T ss_dssp HHHHHHHTSS-SCHHHHHHHH-TCCGGGCCTTHHHHHHHG
T ss_pred CHHHHHHhcC-CCcccHHHHH-hCCHHHHhChHHHHHHHH
Confidence 5666665422 22 1368899 999999999999999874
No 17
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=61.19 E-value=2.7 Score=34.67 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=28.1
Q ss_pred hcCCCChHHHHHhcCCCC--CCCcchhccccCcCcccccc
Q psy14322 52 QHGKENDLVDRIRADPYF--APILNQMPTLLDPKSFYGRA 89 (97)
Q Consensus 52 ~eG~~NDLleRIaaD~~F--~l~~eeL~~iLdP~~F~GrA 89 (97)
++|++ |.|.+.+++.. .++.+||++++||..|+|.+
T Consensus 452 ~~g~~--l~e~~~~~~~~~~~ls~eel~~~ldp~~~~~~~ 489 (495)
T 4adm_A 452 KERKT--IRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 489 (495)
T ss_dssp HHTCC--HHHHHHHTTCCBTTBCHHHHHHHTCHHHHTTCC
T ss_pred HhCCC--HHHHHHhCcccccCCCHHHHHHHcCHHHhcCCc
Confidence 35654 66777777764 37899999999999999965
No 18
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=58.63 E-value=5 Score=33.06 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=21.2
Q ss_pred HHHhcCCCChHHHHHhcCCCCCCCcchhccccCcCcccc
Q psy14322 49 RVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYG 87 (97)
Q Consensus 49 ~VK~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~G 87 (97)
...++|++ |.|.+..+.. ++++||++++||..|+|
T Consensus 448 ~A~~~g~~--l~e~~~~~~~--ls~eeld~~ldP~~~~g 482 (482)
T 3gtd_A 448 EAHKYGIT--LKEAAKKLNF--LSEEEFDKIVVPEKMIS 482 (482)
T ss_dssp HHHHHTCC--HHHHHHHTTS--CCHHHHHHHHSCC----
T ss_pred HHHHhCCC--HHHHHHHcCC--CCHHHHHHHcCHHHhcC
Confidence 33335654 5555555542 88999999999999997
No 19
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=49.72 E-value=3.8 Score=32.95 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=21.2
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|.+.|+++++++...+..|++||.+++
T Consensus 164 ~~~rL~~~~~~~~~~~lgGAvGT~~~~ 190 (438)
T 4eei_A 164 RLKDLKDFQKDGLTVQFSGAVGNYCIL 190 (438)
T ss_dssp HHHHHHHHHHTTCCBCCCCTTSCCSSS
T ss_pred HHHHHHHHHHHHhHhcCccHhhCcccc
Confidence 466788888888888888999997644
No 20
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=49.12 E-value=4.9 Score=31.41 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=22.6
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|++.|+++++++......|++||+++|
T Consensus 178 ~~~rL~~~~~~~~~~~lGgavGT~~~~ 204 (359)
T 2fel_A 178 HLLRLETFAQNGFALQFGGAAGTLEKL 204 (359)
T ss_dssp HHHHHHHHHHHCSBCCCCCTTSSCTTT
T ss_pred HHHHHHHHHHHHhhcCCcHHhccCccC
Confidence 567788888888888889999998875
No 21
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=45.58 E-value=9.5 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=23.4
Q ss_pred hcCCCChHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 52 QHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 52 ~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
++|++ |.|.+.... -++++||++++||..|+|.
T Consensus 457 ~~g~~--l~e~~~~~~--~ls~eeld~~ldP~~~~g~ 489 (490)
T 3e04_A 457 KNGST--LKETAIELG--YLTAEQFDEWVKPKDMLGP 489 (490)
T ss_dssp HHTCC--HHHHHHHHT--SCCHHHHHHHCCGGGSSCC
T ss_pred HHCCC--HHHHHHHcC--CCCHHHHHHHcCHHHhcCC
Confidence 35654 444444333 2789999999999999985
No 22
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=43.85 E-value=5 Score=32.22 Aligned_cols=30 Identities=0% Similarity=-0.101 Sum_probs=25.5
Q ss_pred cCCCC-CCCcchhccccCcCccccccchhhhcc
Q psy14322 65 ADPYF-APILNQMPTLLDPKSFYGRAPEQVVDV 96 (97)
Q Consensus 65 aD~~F-~l~~eeL~~iLdP~~F~GrApeQV~eF 96 (97)
-++.| .++.+++.+++| .|.|.||++|++.
T Consensus 399 ~~~~~~~~~~~~~~~~~d--~~gG~a~~~v~~~ 429 (438)
T 4eei_A 399 EHNIILDIPEMDFEGIKK--TYLKEIDHVFDRS 429 (438)
T ss_dssp TTCCCCCCCCCSHHHHHH--HHTTTHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHH--hcCCchHHHHHHH
Confidence 45665 788999999999 8999999999763
No 23
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=37.93 E-value=17 Score=29.71 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=23.6
Q ss_pred hcCCCChHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 52 QHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 52 ~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
++|+ +|-+.+.++.. ++++|+++++||..|+|.
T Consensus 455 ~~g~--~l~e~~~~~~~--l~~eel~~~ldp~~~~~~ 487 (488)
T 1yfm_A 455 KKGI--TLKESALELGV--LTEKEFDEWVVPEHMLGP 487 (488)
T ss_dssp HHTC--CHHHHHHHTTS--CCHHHHHHHCCGGGCC--
T ss_pred HhCC--CHHHHHHhcCC--CCHHHHHHhcCHHHhcCC
Confidence 3454 46666666643 679999999999999983
No 24
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=36.97 E-value=15 Score=29.69 Aligned_cols=30 Identities=3% Similarity=0.051 Sum_probs=16.7
Q ss_pred hHHHHHhcCCCCCCCcchhccccCcCcccccc
Q psy14322 58 DLVDRIRADPYFAPILNQMPTLLDPKSFYGRA 89 (97)
Q Consensus 58 DLleRIaaD~~F~l~~eeL~~iLdP~~F~GrA 89 (97)
+|-+....+. .++.+++++++||..|+|..
T Consensus 437 ~l~e~~~~~~--~l~~~~~~~~ldp~~~~~~~ 466 (478)
T 1jsw_A 437 SVREVVLERG--LLTEAELDDIFSVQNLMHPA 466 (478)
T ss_dssp CHHHHHHHHT--SSCSHHHHTSCCC-------
T ss_pred CHHHHHHhcC--CCCHHHHHHhCCHHHHhCCC
Confidence 4555555554 35789999999999999953
No 25
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=36.50 E-value=18 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=22.0
Q ss_pred cCCCChHHHHHhcCCCCCCCcchhccccCcCcccccc
Q psy14322 53 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRA 89 (97)
Q Consensus 53 eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~GrA 89 (97)
+|+ +|-+.+..+.. ++.+++++++||..|+|+.
T Consensus 431 ~g~--~l~e~~~~~~~--l~~~e~~~~ldp~~~~~~~ 463 (467)
T 1fur_A 431 EGL--TLKAAALALGY--LSEAEFDSWVRPEQMVGSM 463 (467)
T ss_dssp HTC--CHHHHHHHTTS--SCHHHHHHHCCGGGC----
T ss_pred cCC--CHHHHHHhcCC--CCHHHHHHhcCHHHHhCcc
Confidence 454 46666666643 6799999999999999964
No 26
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=32.88 E-value=13 Score=29.63 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|++.|+++++++......|++||.+++
T Consensus 174 ~~~rL~~~~~~~~~~~lGgAvGT~~~~ 200 (451)
T 3c8t_A 174 HAARLEEISPRVLVVEFSGASGTLASL 200 (451)
T ss_dssp HHHHHHHHHHHHCBCCCCCTTSSCGGG
T ss_pred HHHHHHHHHHhhcccCCchhhhcCccc
Confidence 467788889988999999999999997
No 27
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=32.55 E-value=9.3 Score=27.28 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=26.9
Q ss_pred cHHHHHHhhCCCcceeecCCc----chHHHHHhcCCCChHHHHHhcC--CCCCCCcchhccccCcCcccccc
Q psy14322 24 TQASFLELFNDITLQFATSPF----SPRSRVKQHGKENDLVDRIRAD--PYFAPILNQMPTLLDPKSFYGRA 89 (97)
Q Consensus 24 tqasf~elf~~~~~~~~~~~~----~~a~~VK~eG~~NDLleRIaaD--~~F~l~~eeL~~iLdP~~F~GrA 89 (97)
+.....+++...+|.--|-++ -.+..++-.|+..|||+||.+. ..-.++.++|.++.+...+....
T Consensus 48 s~~~i~~l~~~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kve~s~eei~~~~~~g~l~klT 119 (151)
T 1jjr_A 48 SEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKVEYSEEELKTHISKGTLGKFT 119 (151)
T ss_dssp SSHHHHHHHHHTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC----------------------
T ss_pred cHHHHHHHHHcCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhccccHHHHHHHHhcCcccccc
Confidence 455677777777665544221 1223344567779999999764 22235566666655444443333
No 28
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=28.78 E-value=17 Score=28.96 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.2
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|.+.|+++++++......|++||.+++
T Consensus 180 ~~~rL~~~~~~~~~~~lGgAvGT~~~~ 206 (454)
T 1q5n_A 180 DLDRINAIKARVLVAQLGGAVGSLASL 206 (454)
T ss_dssp HHHHHHHHHHHHSBCCCCCTTSSCGGG
T ss_pred HHHHHHHHHHhhcccCCchHhhcCccc
Confidence 467788888888888999999999987
No 29
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=28.00 E-value=14 Score=30.01 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=23.9
Q ss_pred hcCCCChHHHHHhcCCCCCCCcchhccccCcCccccc
Q psy14322 52 QHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 88 (97)
Q Consensus 52 ~eG~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~Gr 88 (97)
++|++ |.|.+..+. .++.++|++++||..|+|.
T Consensus 430 ~~g~~--l~e~~~~~~--~ls~eel~~~ldp~~~~~~ 462 (468)
T 3r6q_A 430 LTGES--IRELCIKYG--VLTEEQLNEILNPYEMIHP 462 (468)
T ss_dssp HTCCC--SHHHHHHHT--SSCHHHHHHHSCHHHHTSC
T ss_pred HhCCC--HHHHHHHcC--CCCHHHHHHHcCHHHhcCC
Confidence 35654 444444443 4789999999999999986
No 30
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=27.21 E-value=14 Score=29.46 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.8
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|.+.|+.+.+++......|++||.+++
T Consensus 175 ~~~rL~~~~~~~~~~~lGgAvGt~~~~ 201 (444)
T 2pfm_A 175 NVERFKQAANTVRVGKLSGAVGTYANI 201 (444)
T ss_dssp HHHHHHHHHHHTCEECCCCTTSSCTTS
T ss_pred HHHHHHHHHHHhcccCCchhhccCCcC
Confidence 467788888888888899999998775
No 31
>4i1o_B LEPB; GAP, rabgap, hydrolase activator, RAB1B, LPG2490, GTPase-ACT proteins, hydrolysis, RAB1 hydrolase, GTP hydrolase; HET: GDP PEG; 2.70A {Legionella pneumophila subsp} PDB: 4i1m_A*
Probab=27.17 E-value=15 Score=28.87 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCCChHHHHHhcCCCCCCCcchhccccCcCccccccch
Q psy14322 54 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPE 91 (97)
Q Consensus 54 G~~NDLleRIaaD~~F~l~~eeL~~iLdP~~F~GrApe 91 (97)
-+|..||+||.+.+.| +++++..++...|-||--.
T Consensus 249 p~pS~LI~rILkn~~l---W~rin~al~~~~f~gr~dd 283 (302)
T 4i1o_B 249 PKPSPLIERILSNKKF---WKRINSAFESGVFKGRTDD 283 (302)
T ss_dssp SSCCHHHHHHHSCGGG---HHHHHHHHHTTTTTTCSSC
T ss_pred CCchHHHHHHHcCcHH---HHHHHHHhhcCcccCCCcc
Confidence 3568899999999887 7899999999999999654
No 32
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=26.98 E-value=19 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.2
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|.+.|+++++++......|++||.+++
T Consensus 176 ~~~rL~~~~~~~~~~~lGGAvGt~~~~ 202 (450)
T 1re5_A 176 HRQRLQELRPRLLVLQFGGASGSLAAL 202 (450)
T ss_dssp HHHHHHHHHHHHSBCCCCCTTSSCGGG
T ss_pred HHHHHHHHHHhhhhcCCcchhcCCccc
Confidence 467788888888888888999999775
No 33
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=24.54 E-value=34 Score=22.48 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=19.4
Q ss_pred ChHHHHHhcCCCCCCCcchhccc
Q psy14322 57 NDLVDRIRADPYFAPILNQMPTL 79 (97)
Q Consensus 57 NDLleRIaaD~~F~l~~eeL~~i 79 (97)
.+||++|..+|.|.+...-|...
T Consensus 18 ~~lid~L~~~p~~qlk~PSltt~ 40 (98)
T 1y8x_B 18 QEVLDYLTNSASLQMKSPAITAT 40 (98)
T ss_dssp HHHHHHHHHCTTCCCSSCEEEEE
T ss_pred HHHHHHHHhChHhhccCCeeeee
Confidence 58999999999999988777544
No 34
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=24.42 E-value=24 Score=20.72 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=11.0
Q ss_pred ccCCCchhcHHHHH
Q psy14322 16 RGVKGTTGTQASFL 29 (97)
Q Consensus 16 rG~KGt~Gtqasf~ 29 (97)
--++||+|+.||=+
T Consensus 19 S~iPGPVG~~asGi 32 (44)
T 1nov_D 19 STIPGPVGVAATGI 32 (44)
T ss_pred hcCCCchhHHHHhH
Confidence 34789999998854
No 35
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=24.13 E-value=16 Score=29.01 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.7
Q ss_pred CHHHHHHHHhhcccccCCCchhcHHHH
Q psy14322 2 DEQAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 2 d~~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
|.+.|+++++++......|++||.+++
T Consensus 163 ~~~rL~~~~~~~~~~~lGgAvGt~~~~ 189 (429)
T 1c3c_A 163 NVQRLERAIEEVSYGKISGAVGNYANV 189 (429)
T ss_dssp HHHHHHHHHHHTCEECCCCTTSSCSSS
T ss_pred HHHHHHHHHHHhccCCCchhhcCCccC
Confidence 467788888888888899999998765
No 36
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=23.89 E-value=22 Score=27.96 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHHHhhcccccCCCchhcHHHH
Q psy14322 4 QAISRARDELRFRGVKGTTGTQASF 28 (97)
Q Consensus 4 ~~l~~~~~~~~~rG~KGt~Gtqasf 28 (97)
+.|++.++++......|++||.+++
T Consensus 167 ~rL~~~~~~~~~~~lGgAvGt~~~~ 191 (403)
T 1dof_A 167 CRQLALAEEFIRAKIGGAVGTMASW 191 (403)
T ss_dssp HHHHHHHHHHCCBCCCCTTSSCGGG
T ss_pred HHHHHHHHHhcccCccHHHhhCccc
Confidence 6678888888888889999999987
No 37
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=22.98 E-value=27 Score=20.52 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=10.8
Q ss_pred ccCCCchhcHHHHH
Q psy14322 16 RGVKGTTGTQASFL 29 (97)
Q Consensus 16 rG~KGt~Gtqasf~ 29 (97)
--++||+|+.|+=+
T Consensus 19 S~iPGPVG~~asGi 32 (44)
T 2z2q_B 19 SNIPGPIGVAASGI 32 (44)
T ss_pred hcCCCchhHHHHhH
Confidence 34789999998754
No 38
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=21.95 E-value=19 Score=20.79 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred ccCCCchhcHHHHH
Q psy14322 16 RGVKGTTGTQASFL 29 (97)
Q Consensus 16 rG~KGt~Gtqasf~ 29 (97)
--++||+|+.||=+
T Consensus 19 S~iPGPVG~~asGi 32 (40)
T 1f8v_D 19 SVIPGPVGTISAGV 32 (40)
T ss_dssp --------------
T ss_pred hcCCCchhHHHHhH
Confidence 34789999998744
No 39
>4aeq_A Colicin-M immunity protein; immune system, 3D domain SWAP; 1.89A {Escherichia coli} PDB: 2xgl_A
Probab=21.86 E-value=34 Score=23.04 Aligned_cols=15 Identities=40% Similarity=0.693 Sum_probs=12.2
Q ss_pred chHHHHHhcCCCChHHHHHh
Q psy14322 45 SPRSRVKQHGKENDLVDRIR 64 (97)
Q Consensus 45 ~~a~~VK~eG~~NDLleRIa 64 (97)
-+|..|| ||+++||.
T Consensus 19 qvaa~VK-----rDflqRI~ 33 (98)
T 4aeq_A 19 QARTFVK-----NDYLQRMK 33 (98)
T ss_dssp HHHHHHH-----HHHHHHHH
T ss_pred HHHHHHH-----HHHHHhhh
Confidence 4677888 99999984
No 40
>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*
Probab=20.21 E-value=25 Score=23.79 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=12.2
Q ss_pred ChHHHHHhcCCCCC
Q psy14322 57 NDLVDRIRADPYFA 70 (97)
Q Consensus 57 NDLleRIaaD~~F~ 70 (97)
+.|.+||.+||+-.
T Consensus 61 ~~Ly~rI~~D~RH~ 74 (121)
T 1yrx_A 61 AEVMTHIQRDRRHS 74 (121)
T ss_dssp HHHHHHHHTCTTEE
T ss_pred HHHHHHHhcCCCcC
Confidence 78999999999954
Done!