RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14322
(97 letters)
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 59.6 bits (145), Expect = 3e-12
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 49 RVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQVVDV 96
VKQ G +NDL++RI+ D YF+PI +Q+ LLDP SF GRA +QV
Sbjct: 435 VVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRF 482
Score = 52.7 bits (127), Expect = 9e-10
Identities = 25/33 (75%), Positives = 28/33 (84%)
Query: 1 MDEQAISRARDELRFRGVKGTTGTQASFLELFN 33
MD Q + R RD+LRFRGVKGTTGTQASFL+LF
Sbjct: 203 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFE 235
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 53.8 bits (130), Expect = 4e-10
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 1 MDEQAISRARDELRFRGVKGTTGTQASFLELFNDI 35
M Q++S RD++RFRG+KG TGTQ SFL LF
Sbjct: 177 MAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGD 211
Score = 52.7 bits (127), Expect = 8e-10
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 51 KQHGKENDLVDRIRADPYFAPILNQMPTLL-DPKSFYGRAPEQVVDV 96
+ + + + ADP+F + +++ L+ +P +F GR Q
Sbjct: 408 QLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESF 454
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 26.8 bits (60), Expect = 1.1
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 4 QAISRARDELRFR------GVKGTTGTQASFLELFNDI 35
+ A +L + G GT AS+ EL ++
Sbjct: 161 YELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEV 198
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 26.5 bits (59), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 25 QASFLELFNDI--TLQFATSPFSPRS 48
QAS EL+ + Q T+PF PRS
Sbjct: 129 QASTSELYGLVQEIPQKETTPFYPRS 154
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 26.1 bits (58), Expect = 2.3
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 25 QASFLELFNDI-TLQFATSPFSPRS 48
QA E+F Q T+PF PRS
Sbjct: 159 QAGSSEMFGSTPPPQSETTPFHPRS 183
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 26.0 bits (58), Expect = 2.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 25 QASFLELFNDI--TLQFATSPFSPRS 48
QAS E+F I Q +PF PRS
Sbjct: 135 QASTSEMFGLIQAERQDENTPFYPRS 160
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 25.3 bits (56), Expect = 3.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 25 QASFLELFNDI--TLQFATSPFSPRS 48
QAS EL+ + Q T+PF PRS
Sbjct: 153 QASTSELYGKVQEIPQKETTPFYPRS 178
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 25.2 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 25 QASFLELFNDI--TLQFATSPFSPRS 48
QAS E+F + Q +PF PRS
Sbjct: 124 QASTSEMFGKVQEIPQTEKTPFYPRS 149
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 25.1 bits (54), Expect = 5.1
Identities = 14/67 (20%), Positives = 22/67 (32%)
Query: 27 SFLELFNDITLQFATSPFSPRSRVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFY 86
F + + ++ +K HG L I A PY P+ +P L S +
Sbjct: 887 RFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSW 946
Query: 87 GRAPEQV 93
R
Sbjct: 947 ARTSGMT 953
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 24.5 bits (54), Expect = 6.9
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 30 ELFNDITLQFATSPFSPRSRVKQHGKE------NDLVDRIRADPYFAPIL 73
L I ++ T PF+ R + L Y P+L
Sbjct: 221 FLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGY--PVL 268
>3q8d_A DNA repair protein RECO; OB-fold, recombination initation, recom
initiation, SSB, RECR; HET: DNA CPS; 2.30A {Escherichia
coli}
Length = 242
Score = 24.4 bits (53), Expect = 8.1
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 12/63 (19%)
Query: 16 RGVKGTTGTQASFLELFNDITLQFATSPFSPRSRVKQHGKENDLVDRIRADPYFAPILNQ 75
+G + T L+ F + L+F E + A P+
Sbjct: 37 KGARSKRSTLKGALQPFTPLLLRF------------GGRGEVKTLRSAEAVSLALPLSGI 84
Query: 76 MPT 78
Sbjct: 85 TLY 87
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 24.4 bits (54), Expect = 8.3
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 3 EQAISRAR---DELRFRGVKGTT 22
EQA + E R RG+K T
Sbjct: 408 EQAARKMLRNLREFRIRGIK-TN 429
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.393
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,488,758
Number of extensions: 75069
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 15
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)