RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14322
         (97 letters)



>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
           (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
          Length = 448

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 51  KQHGKENDLVDRIRADPYFAPILN--QMPTLLDPKSFYGRAPEQVVDV 96
           +   ++  L   +  +P  +  L+  ++  LLDP  + G+A   V   
Sbjct: 392 RAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQARVWVARA 439


>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
           (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
          Length = 444

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 50  VKQHGKEN-DLVDRIRADPYFAPILN--QMPTLLDPKSFYGRAPEQVVDV 96
            K    E   L D I          N  Q+  +  P+S+ G   +Q+  V
Sbjct: 391 CKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQDQIDAV 440


>d1iqoa_ d.214.1.1 (A:) Hypothetical protein MTH1880 {Archaeon
          Methanothermobacter thermautotrophicus [TaxId: 145262]}
          Length = 88

 Score = 24.0 bits (52), Expect = 2.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 11 DELRFRGVKGTTGTQASFLELFNDIT 36
          DE+    +KGT      FL  +N + 
Sbjct: 38 DEIAIISIKGTQSNHVLFLSSYNSVD 63


>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
          orientalis [TaxId: 31958]}
          Length = 401

 Score = 23.5 bits (49), Expect = 6.5
 Identities = 8/72 (11%), Positives = 20/72 (27%)

Query: 11 DELRFRGVKGTTGTQASFLELFNDITLQFATSPFSPRSRVKQHGKENDLVDRIRADPYFA 70
            +R  G            E   ++ +       S R+ +++         R       A
Sbjct: 22 VRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAIA 81

Query: 71 PILNQMPTLLDP 82
             +++P   + 
Sbjct: 82 TQFDEIPAAAEG 93


>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
          {Amycolatopsis orientalis [TaxId: 31958]}
          Length = 391

 Score = 23.5 bits (49), Expect = 6.5
 Identities = 6/45 (13%), Positives = 16/45 (35%)

Query: 11 DELRFRGVKGTTGTQASFLELFNDITLQFATSPFSPRSRVKQHGK 55
            LR  G          ++E   ++ +       + R+  ++ G+
Sbjct: 22 ARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGE 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,414
Number of extensions: 13769
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 5
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)