BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14323
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
 pdb|1P9O|B Chain B, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
          Length = 313

 Score =  211 bits (537), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 113/266 (42%), Positives = 163/266 (61%), Gaps = 10/266 (3%)

Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYS--TCVESAIHLAEYLW 198
           SGGT VP+E   VRF+DNFS+G RGA+S E F+  GY VLF+Y   +    A       W
Sbjct: 44  SGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTW 103

Query: 199 L--LRTVCESLQ-----DGGNRVLLYLAAAVADFYIPADQMVSTCVESAVHLAEYLWLLR 251
           L  LR    +L      +     L   A A+  +   A       VE    LA+YL LL+
Sbjct: 104 LSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTT-LADYLHLLQ 162

Query: 252 TVCESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSV 311
              ++L   G   + YLAAAV+DFY+P  +MPEHK++S  GP  I++++VPK+LSPL   
Sbjct: 163 AAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLVKD 222

Query: 312 WSPRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQVILVSAEAEVPITL 371
           W+P+AF++SFKLETDP I++ +AR AL+ Y H++V+ N+L +R+  V++V+ ++E  + L
Sbjct: 223 WAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDSETKLLL 282

Query: 372 SEEDKASGVEIEKYLVQEVTRRHEAF 397
           SEE+   GVEIE+ +V  +  RH AF
Sbjct: 283 SEEEIEKGVEIEEKIVDNLQSRHTAF 308



 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 1   MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVS 60
           +E   VRF+DNFS+G RGA+S E F+  GY VLF+YR  S  PY   F   T+L  L+ S
Sbjct: 51  LEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPS 110

Query: 61  ADNPD---TISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQD 117
                   ++  +   +P     L  Y         L VEFTTLA+YL LL+   ++L  
Sbjct: 111 GPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNP 170

Query: 118 EGNRVLLYLAAAVADFYIPADQM 140
            G   + YLAAAV+DFY+P  +M
Sbjct: 171 LGPSAMFYLAAAVSDFYVPVSEM 193


>pdb|2IWF|A Chain A, Resting Form Of Pink Nitrous Oxide Reductase From
           Achromobacter Cycloclastes
 pdb|2IWF|B Chain B, Resting Form Of Pink Nitrous Oxide Reductase From
           Achromobacter Cycloclastes
 pdb|2IWK|A Chain A, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
           Achromobacter Cycloclastes At 1.7 Angstrom Resolution
 pdb|2IWK|B Chain B, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
           Achromobacter Cycloclastes At 1.7 Angstrom Resolution
          Length = 642

 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 65  DTISVKPEVVPKLRPILDR----YARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQDEGN 120
           D I+V P ++P +R + DR    +A  ++ +    V+        W      E++  +GN
Sbjct: 495 DAIAVSPSILPNIRSVWDRNDPLWAETRKQAEADEVDIDE-----W-----TEAVIRDGN 544

Query: 121 RVLLYLAAAVADFYIPADQMSGGTTVPMEHNTVRFVDN----FSAGTRGASSVEYFVEQG 176
           +V +Y+ +    F  P+  +  G  V +    +  +D+    F+ G  G  ++E   +Q 
Sbjct: 545 KVRVYMTSVAPSFSQPSFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNHGV-AMEVGPQQT 603

Query: 177 YAVLFV 182
            +V FV
Sbjct: 604 SSVTFV 609


>pdb|2FOZ|A Chain A, Human Adp-Ribosylhydrolase 3
 pdb|2FP0|A Chain A, Human Adp-Ribosylhydrolase 3
 pdb|2FP0|B Chain B, Human Adp-Ribosylhydrolase 3
          Length = 347

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 249 LLRTVCESLQDGGNR-VLLYLAAAVADFYIPADQMPEHKMQSGDG 292
           L RT+  S+  GG+   +  +A A+A  Y   DQ+PE   QS +G
Sbjct: 285 LQRTLIYSISLGGDTDTIATMAGAIAGAYYGMDQVPESWQQSCEG 329


>pdb|2G4K|A Chain A, Anomalous Substructure Of Human Adp-Ribosylhydrolase 3
          Length = 347

 Score = 28.1 bits (61), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 249 LLRTVCESLQDGGNR-VLLYLAAAVADFYIPADQMPEHKMQSGDG 292
           L RT+  S+  GG+   +  +A A+A  Y   DQ+PE   QS +G
Sbjct: 285 LQRTLIYSISLGGDTDTIATMAGAIAGAYYGMDQVPESWQQSCEG 329


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,487,020
Number of Sequences: 62578
Number of extensions: 458693
Number of successful extensions: 999
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 6
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)