BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14323
(400 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1
SV=2
Length = 311
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 162/266 (60%), Gaps = 10/266 (3%)
Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYS--TCVESAIHLAEYLW 198
SGGT VP+E VRF+DNFS+G RGA+S E F+ GY VLF+Y + A W
Sbjct: 42 SGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTW 101
Query: 199 L--LRTVCESLQ-----DGGNRVLLYLAAAVADFYIPADQMVSTCVESAVHLAEYLWLLR 251
L LR +L + L A A+ + A VE LA+YL LL+
Sbjct: 102 LSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTT-LADYLHLLQ 160
Query: 252 TVCESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSV 311
++L G + YLAAAV+DFY+P +MPEHK+QS GP I++++VPK+LSPL
Sbjct: 161 AAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKD 220
Query: 312 WSPRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQVILVSAEAEVPITL 371
W+P+AF++SFKLETDP I++ +AR AL+ Y H++V+ N+L +R+ V +V+ ++E + L
Sbjct: 221 WAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLL 280
Query: 372 SEEDKASGVEIEKYLVQEVTRRHEAF 397
SEE+ GVEIE+ +V + RH AF
Sbjct: 281 SEEEIEKGVEIEEKIVDNLQSRHTAF 306
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 1 MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVS 60
+E VRF+DNFS+G RGA+S E F+ GY VLF+YR S PY F T+L L+ S
Sbjct: 49 LEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPS 108
Query: 61 ADNPD---TISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQD 117
++ + +P L Y L+VEFTTLA+YL LL+ ++L
Sbjct: 109 GPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNP 168
Query: 118 EGNRVLLYLAAAVADFYIPADQM 140
G + YLAAAV+DFY+P +M
Sbjct: 169 LGPSAMFYLAAAVSDFYVPVSEM 191
>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1
Length = 316
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 159/273 (58%), Gaps = 29/273 (10%)
Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVY----------------S 184
SGGT VP+E NTVRF+DNFSAG RGA+S EYF + GY+V+F+Y +
Sbjct: 45 SGGTLVPLEQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPFTRRYEGPWT 104
Query: 185 TCVESAIHLAEYLWLLRTVCESLQDGGNRVLLYLAAAVADFYIPADQMVSTCVESAVHLA 244
E + E W+++ +S ++ A D Y +++ + L
Sbjct: 105 NLFERSNGSQEKPWIVKQEFQS--------TVFNALNELDTYTKHHRLIMIPYTT---LT 153
Query: 245 EYLWLLRTVCESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQL--VP 302
EYLW L+ + E LQ +R L YLAAAV+DF+IP ++ EHK+QSG G + +++ VP
Sbjct: 154 EYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVP 213
Query: 303 KMLSPLTSVWSPRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQVILVS 362
K L L W+P A ++SFKLETDP+IL+ KAR AL +Y+H+LVI NLL TRK V V+
Sbjct: 214 KFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIANLLSTRKRSVAFVT 273
Query: 363 AEAEVPITLSEEDKASGVEIEKYLVQEVTRRHE 395
++ + LS++D VEIE+Y+V H+
Sbjct: 274 SKTVEWLHLSDDDIVKKVEIEQYIVSRAISLHK 306
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSG--ATFLDCLQ 58
+E NTVRF+DNFSAG RGA+S EYF + GY+V+F+YRN S+ P+ R + G +
Sbjct: 52 LEQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPFTRRYEGPWTNLFERSN 111
Query: 59 VSADNPDTISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQDE 118
S + P VK E + L+ + L+ + +TTL EYLW L+ + E LQ
Sbjct: 112 GSQEKPWI--VKQEFQSTVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLKAIAERLQII 169
Query: 119 GNRVLLYLAAAVADFYIPADQMS 141
+R L YLAAAV+DF+IP ++S
Sbjct: 170 ASRALFYLAAAVSDFHIPPKELS 192
>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2
SV=1
Length = 311
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 172/293 (58%), Gaps = 26/293 (8%)
Query: 115 LQDEGNRVLLYLAAAVADFYIPADQMSGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVE 174
L ++G RV+L SGGT VP+E VRF+DNFS+G RGA+S E F+
Sbjct: 30 LGEQGRRVVLI--------------TSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLA 75
Query: 175 QGYAVLFVYS--TCVESAIHLAEYLWL--LRTVCESLQDGG------NRVLLYLAAAVAD 224
GY VLF+Y + A WL LR + Q G L AAA+
Sbjct: 76 AGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPA-QSGKLSLEAEENALPGFAAALQS 134
Query: 225 FYIPADQMVSTCVESAVHLAEYLWLLRTVCESLQDGGNRVLLYLAAAVADFYIPADQMPE 284
+ A VE LA+YL LL+ +L G+ + YLAAAV+DFYIP +MPE
Sbjct: 135 YQEAAAAGTFLAVEFTT-LADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPE 193
Query: 285 HKMQSGDGPPVISLQLVPKMLSPLTSVWSPRAFVVSFKLETDPNILVKKARAALDKYHHK 344
HK+ S GP I++++VPKMLSPL W+P+AFVVSFKLETDP+I++ +AR AL+ Y H+
Sbjct: 194 HKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQ 253
Query: 345 LVIGNLLHTRKHQVILVSAEAEVPITLSEEDKASGVEIEKYLVQEVTRRHEAF 397
+V+ N+L + K VI+V+ ++E + LSEE+ A G+ IE+ +V ++ RH AF
Sbjct: 254 VVVANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAF 306
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 1 MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVS 60
+E VRF+DNFS+G RGA+S E F+ GY VLF+YR S PY F +L L+ S
Sbjct: 49 LEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPS 108
Query: 61 AD-NPDTISVKPE--VVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQD 117
+S++ E +P L Y L+VEFTTLA+YL LL+ +L
Sbjct: 109 GPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSP 168
Query: 118 EGNRVLLYLAAAVADFYIPADQM 140
G+ + YLAAAV+DFYIP +M
Sbjct: 169 LGSSAMFYLAAAVSDFYIPVSEM 191
>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1
SV=2
Length = 365
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 162/282 (57%), Gaps = 32/282 (11%)
Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYSTCVESAIHLAEYLWLL 200
SGGTTVP+E+NTVRF+DNFSAGTRGASS E F+ GY+V+F++ + + + + +
Sbjct: 80 SGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRS-FSHSI 138
Query: 201 RTVCESLQDGGNRVLLYLAAAVA------DFYIPADQMVSTCVESAVHLAEYLWLLRTVC 254
T+ D ++ A V D Y+ ++ + + V+ +YLW L+++
Sbjct: 139 NTLFLDYIDSEGKIKPEFAENVLKNKKLYDKYMEKEEKLLLLPFTTVN--QYLWSLKSIA 196
Query: 255 ESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGD-------------------GPPV 295
+ L + G L YLAAAV+DF++P ++P+HK+QSGD G +
Sbjct: 197 KLLNNSG--CLFYLAAAVSDFFVPYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLI 254
Query: 296 ISLQLVPKMLSPLTSVWSPRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRK 355
++L VPK L L W+ +A +VSFKLETD ++L+ K ALD+Y+H+LVIGNLL TR
Sbjct: 255 VNLDPVPKFLRRLVESWATQAMIVSFKLETDESMLLYKCTQALDRYNHQLVIGNLLQTRN 314
Query: 356 HQVILVSAEAEVPITLSEEDKASGVEIEKYLVQEVTRRHEAF 397
QVI VS E + ++K IE+ ++ EV RH+ +
Sbjct: 315 KQVIFVSPENRKGDWVRLDEKHHS--IEEMIIPEVIARHDKW 354
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 16/146 (10%)
Query: 1 MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFS---GATFLDCL 57
+E+NTVRF+DNFSAGTRGASS E F+ GY+V+F++R S+ PY R FS FLD +
Sbjct: 87 LENNTVRFIDNFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRSFSHSINTLFLDYI 146
Query: 58 QVSADNPDTISVKPEV---VPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCES 114
+KPE V K + + D+Y ++++ LL + FTT+ +YLW L+++ +
Sbjct: 147 DSEG------KIKPEFAENVLKNKKLYDKY--MEKEEKLLLLPFTTVNQYLWSLKSIAKL 198
Query: 115 LQDEGNRVLLYLAAAVADFYIPADQM 140
L + G L YLAAAV+DF++P ++
Sbjct: 199 LNNSG--CLFYLAAAVSDFFVPYSRL 222
>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana
GN=PPCS2 PE=2 SV=2
Length = 309
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 134/224 (59%), Gaps = 11/224 (4%)
Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVY--STCVESAIHLAEYLW 198
SGGTTVP+E VR++DNFS+G RGA+S E FV+ GYAV+F+Y TC L + +
Sbjct: 46 SGGTTVPLEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRSLPDDPF 105
Query: 199 LLRTVCESLQDGGNRVLLYLAAAVADFYIPADQMVSTCVESAVHLA-----EYLWLLRTV 253
L C D N + ++ + A DQ + S + L EYL +LR +
Sbjct: 106 L---ECFEFSDKTN-IQVHTSHLEAVKMAVMDQQTAVAEGSLLKLPFSTIYEYLQMLRLI 161
Query: 254 CESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSVWS 313
E+L+D G + YLAAAV+DFY+P M EHK++SG GP I L VPKMLS L S W+
Sbjct: 162 AEALKDVGPCSMFYLAAAVSDFYVPWKSMTEHKIESGSGPLDIRLAQVPKMLSVLRSNWA 221
Query: 314 PRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQ 357
P+AF +SFKLETD IL++KA AL KY V+ N L TRK +
Sbjct: 222 PKAFCISFKLETDSKILMEKATKALRKYKVHAVVANELSTRKEE 265
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
Query: 1 MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVS 60
+E VR++DNFS+G RGA+S E FV+ GYAV+F+YR + +PY R FL+C + S
Sbjct: 53 LEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRSLPDDPFLECFEFS 112
Query: 61 ADNPDTISVKPEVVPKLR-PILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQDEG 119
+ I V + ++ ++D+ V S LL + F+T+ EYL +LR + E+L+D G
Sbjct: 113 --DKTNIQVHTSHLEAVKMAVMDQQTAVAEGS-LLKLPFSTIYEYLQMLRLIAEALKDVG 169
Query: 120 NRVLLYLAAAVADFYIPADQMS 141
+ YLAAAV+DFY+P M+
Sbjct: 170 PCSMFYLAAAVSDFYVPWKSMT 191
>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana
GN=PPCS1 PE=2 SV=1
Length = 317
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 133/224 (59%), Gaps = 11/224 (4%)
Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVY--STCVESAIHLAEYLW 198
SGGTTVP+E VR++DNFS+G RGA+S E FV+ GYAV+F+Y TC +L + +
Sbjct: 54 SGGTTVPLEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRYLPDDPF 113
Query: 199 LLRTVCESLQDGGNRVLLYLAAAVADFYIPADQMVSTCVESAVHLA-----EYLWLLRTV 253
L C D N + ++ + + A DQ + + L EYL +LR +
Sbjct: 114 L---ECFEFPDAKN-IQVHGSHSGAVKMAVMDQQAAVAEGRLLKLPFSTIYEYLQMLRLI 169
Query: 254 CESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSVWS 313
L+D G + YLAAAV+DFY+P M EHK++SG GP I L VPKMLS L S W+
Sbjct: 170 ATILKDVGPCSMFYLAAAVSDFYVPWLSMTEHKIESGSGPLDIRLAQVPKMLSILRSNWA 229
Query: 314 PRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQ 357
P+AF +SFKLETD IL++KA AL KY V+ N L TRK +
Sbjct: 230 PKAFCISFKLETDSKILLEKATKALQKYKVHAVVANELLTRKEE 273
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 1 MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVS 60
+E VR++DNFS+G RGA+S E FV+ GYAV+F+YR + +PY R+ FL+C +
Sbjct: 61 LEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRYLPDDPFLECFEF- 119
Query: 61 ADNPD--TISVKPEVVPKLR-PILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQD 117
PD I V ++ ++D+ A V + LL + F+T+ EYL +LR + L+D
Sbjct: 120 ---PDAKNIQVHGSHSGAVKMAVMDQQAAVA-EGRLLKLPFSTIYEYLQMLRLIATILKD 175
Query: 118 EGNRVLLYLAAAVADFYIP 136
G + YLAAAV+DFY+P
Sbjct: 176 VGPCSMFYLAAAVSDFYVP 194
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 101/247 (40%), Gaps = 72/247 (29%)
Query: 107 LLRTVCESLQDEGNRVLLYLAAAVADFYIPADQMSGGTTVPMEHNTVRFVDNFSAGTRGA 166
++ + +L+ EGNRVL+ ++GGT ++ VR + N S+G G
Sbjct: 183 VIEKIGNNLKKEGNRVLI---------------LNGGTVEFIDK--VRVISNLSSGKMGV 225
Query: 167 SSVEYFVEQGYAVLFVYSTCVESAIHLAEYLWLLRTVCESLQDGGNRVLLYLAAAVADFY 226
+ E F ++G+ V + + +E ++ + L
Sbjct: 226 ALAEAFCKEGFYVEVITAMGLEPPYYIKNHKVL--------------------------- 258
Query: 227 IPADQMVSTCVESAVHLAEYLWLLRTVCESLQDGGNRVLLYLAAAVADFYIPADQMPEHK 286
A +M++ +E A ++ +AA++DF + + E K
Sbjct: 259 -TAKEMLNKAIELAKDFD--------------------IIISSAAISDFTVES---FEGK 294
Query: 287 MQSGDGPPVISLQLVPKMLSPLTSVWSPRAFVVSFKLE--TDPNILVKKARAALDKYHHK 344
+ S + ++ L+ PK+L L ++ + ++ FK E D L+ +A+ L+KY+
Sbjct: 295 LSS-EEELILKLKRNPKVLEELRRIYKDKV-IIGFKAEYNLDEKELINRAKERLNKYNLN 352
Query: 345 LVIGNLL 351
++I N L
Sbjct: 353 MIIANDL 359
>sp|Q97GV3|ADDA_CLOAB ATP-dependent helicase/nuclease subunit A OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=addA PE=3 SV=1
Length = 1252
Score = 35.0 bits (79), Expect = 1.1, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 45 IRHFSGATFLDCLQVSADNPDTISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEY 104
I+ G TF D L+V+AD D E ++R L+R R +++SL +T + E+
Sbjct: 677 IKVIEGDTFYDKLKVAADIGDD-----EFSVRIRTFLNRLYRWRKESL-----YTPIDEF 726
Query: 105 LWLLRT----------VCESLQDEGNRVLLYLAAAV 130
+W L T V +Q + N +L+ A +
Sbjct: 727 IWYLYTDTGYYGYVGAVSGGIQRQANLKMLFQRAKI 762
>sp|Q9DUN3|POLG_VESVA Genome polyprotein OS=Vesicular exanthema of swine virus serotype
A48 (isolate Swine/United States/A48/1948) GN=ORF1 PE=3
SV=1
Length = 1881
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 48 FSGATFLDCLQV-SADNPDTISVKPEVVPKLRP-----ILDRYARVKRDSLLLSVEFTTL 101
+ ATF+D +++ + DNPD +S P+++ KL+P I+D + K L V T+L
Sbjct: 332 MAAATFIDHIRMMTVDNPDLVSYIPKLIVKLKPLTLKMIIDNHENTKEGWL---VTLTSL 388
Query: 102 AE 103
AE
Sbjct: 389 AE 390
>sp|P94127|NOSZ_ACHCY Nitrous-oxide reductase OS=Achromobacter cycloclastes GN=nosZ PE=1
SV=2
Length = 642
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 65 DTISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQDEGNRVLL 124
D I+V P ++P +R + DR +D L A+ + + E++ +GN+V +
Sbjct: 495 DAIAVSPSILPNIRSVWDR-----KDPLWAETRKQAEADEV-DIDEWTEAVIRDGNKVRV 548
Query: 125 YLAAAVADFYIPADQMSGGTTVPMEHNTVRFVDN----FSAGTRGASSVEYFVEQGYAVL 180
Y+ + F P+ + G V + + +D+ F+ G G ++E +Q +V
Sbjct: 549 YMTSVAPSFSQPSFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNHGV-AMEVGPQQTSSVT 607
Query: 181 FV 182
FV
Sbjct: 608 FV 609
>sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion virus serotype 1 GN=ORF1
PE=3 SV=3
Length = 1879
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 48 FSGATFLDCLQV-SADNPDTISVKPEVVPKLRP-----ILDRYARVKRDSLLLSVEFTTL 101
+ TF+ L++ + DNPD +S P+++ KL+P I+D + K L V T+L
Sbjct: 332 MAAGTFIGHLRMMTVDNPDMVSYLPKLIVKLKPLTLKMIIDNHENTKEGWL---VTLTSL 388
Query: 102 AE 103
AE
Sbjct: 389 AE 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,232,529
Number of Sequences: 539616
Number of extensions: 5740624
Number of successful extensions: 14171
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14135
Number of HSP's gapped (non-prelim): 21
length of query: 400
length of database: 191,569,459
effective HSP length: 120
effective length of query: 280
effective length of database: 126,815,539
effective search space: 35508350920
effective search space used: 35508350920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)