RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14323
         (400 letters)



>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo
           sapiens} SCOP: c.72.3.1
          Length = 313

 Score =  225 bits (575), Expect = 2e-71
 Identities = 108/265 (40%), Positives = 156/265 (58%), Gaps = 8/265 (3%)

Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYS-TCVESAIHLAEYLWL 199
           SGGT VP+E   VRF+DNFS+G RGA+S E F+  GY VLF+Y         H       
Sbjct: 44  SGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTW 103

Query: 200 LRTVCESLQDGGNRVLLYLAAAVADF-------YIPADQMVSTCVESAVHLAEYLWLLRT 252
           L  +  S       + L                Y  A    +  V     LA+YL LL+ 
Sbjct: 104 LSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQA 163

Query: 253 VCESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSVW 312
             ++L   G   + YLAAAV+DFY+P  +MPEHK++S  GP  I++++VPK+LSPL   W
Sbjct: 164 AAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLVKDW 223

Query: 313 SPRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQVILVSAEAEVPITLS 372
           +P+AF++SFKLETDP I++ +AR AL+ Y H++V+ N+L +R+  V++V+ ++E  + LS
Sbjct: 224 APKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDSETKLLLS 283

Query: 373 EEDKASGVEIEKYLVQEVTRRHEAF 397
           EE+   GVEIE+ +V  +  RH AF
Sbjct: 284 EEEIEKGVEIEEKIVDNLQSRHTAF 308



 Score =  125 bits (314), Expect = 5e-33
 Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 1   MEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVS 60
           +E   VRF+DNFS+G RGA+S E F+  GY VLF+YR  S  PY   F   T+L  L+ S
Sbjct: 51  LEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPS 110

Query: 61  ADNPD---TISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQD 117
                   ++  +   +P     L  Y         L VEFTTLA+YL LL+   ++L  
Sbjct: 111 GPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNP 170

Query: 118 EGNRVLLYLAAAVADFYIPADQMS 141
            G   + YLAAAV+DFY+P  +M 
Sbjct: 171 LGPSAMFYLAAAVSDFYVPVSEMP 194


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 63.5 bits (154), Expect = 7e-11
 Identities = 90/501 (17%), Positives = 139/501 (27%), Gaps = 166/501 (33%)

Query: 34  FVYRNNSIR-----PYIRHFSG----ATFLDCLQVSADNP---DTISVKPEVVPK----L 77
               + S+      P    F        F   L    +     D  +   E+V K    +
Sbjct: 9   LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68

Query: 78  RPILDRYARVKRDSLLLSV--EFTTLAEYLWL--LRTVCESLQDEGNRVLLYLAAAVADF 133
             +++     + D +L     EF     YL    +  +   L  E N   L     +   
Sbjct: 69  SSLVEPSKVGQFDQVLNLCLTEFEN--CYLEGNDIHALAAKLLQE-NDTTLVKTKELIKN 125

Query: 134 YIPADQMSGGTTVPMEHNTVRFVDNFSAGTRGASSV-----------EYFVE-QG-YAVL 180
           YI A  M+        ++ +     F A   G + +           +YF E +  Y   
Sbjct: 126 YITARIMAKRPFDKKSNSAL-----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT- 179

Query: 181 FVYSTCVESAIHL-AEYLW-LLRTV--CESLQDGGNRVL--L----------YLAAAVAD 224
             Y   V   I   AE L  L+RT    E +   G  +L  L          YL +    
Sbjct: 180 --YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237

Query: 225 F-YIPADQMVS---TCVESAVHLAEYLWLLR--TVC----------------ESLQDGGN 262
              I   Q+     T         E    L+  T                  ES      
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297

Query: 263 RVLLYLAAAVADFYI--------PADQMPEHKMQS----GDGPPVISLQLVPKMLS---- 306
           + +  L      F+I        P   +P   ++      +G P  S    P MLS    
Sbjct: 298 KAITVL------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--S----P-MLSISNL 344

Query: 307 ----------------PLTS------VWSPRAFVVS---FKLETDPNILVK-KARAALD- 339
                           P         V   +  VVS     L      L K KA + LD 
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404

Query: 340 -KYHH---KLVIGN-LL------HT--------------RKHQVILVSAEAEVPI--TLS 372
            +      KL   N  L      H+               K+ V   + + ++P+  T  
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464

Query: 373 EED-KASGVEIEKYLVQEVTR 392
             D +     I + +V  + R
Sbjct: 465 GSDLRVLSGSISERIVDCIIR 485



 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 43/292 (14%), Positives = 90/292 (30%), Gaps = 79/292 (27%)

Query: 46   RHFSGATFLDCLQVSADNPDTISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYL 105
             HF        L +  +NP  +++      K + I + Y+ +  ++    V+     E  
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFG-GEKGKRIRENYSAMIFET---IVDGKLKTEK- 1705

Query: 106  WLLRTVCESLQD---EGNRVLLY---------LAAAVADFYIPADQMSGGTTVPMEHNTV 153
             + + + E          + LL               A F              ++   +
Sbjct: 1706 -IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED------------LKSKGL 1752

Query: 154  RFVDNFSAGTRGASSV-EYFVEQGYAVLFVYSTCVESAIHLAEYLWLLR----TVCESLQ 208
               D   AG     S+ E      YA L      +   + +   + ++     T+  ++ 
Sbjct: 1753 IPADATFAG----HSLGE------YAAL----ASLADVMSIESLVEVVFYRGMTMQVAVP 1798

Query: 209  DGGNRVLLYLAAAVADFYIPADQMVSTCVESAVH-LAEYL-----WLLRTV---CESLQ- 258
                    Y   A+     P  ++ ++  + A+  + E +     WL+  V    E+ Q 
Sbjct: 1799 RDELGRSNYGMIAIN----PG-RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853

Query: 259  -DGGNRVLLYLAAAVADFY----IPADQMPEHKMQSGDGPPVISLQLVPKML 305
               G+   L     V +F     I   ++ +           +SL+ V   L
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIELQKS----------LSLEEVEGHL 1895


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 59.9 bits (144), Expect = 7e-10
 Identities = 60/413 (14%), Positives = 122/413 (29%), Gaps = 120/413 (29%)

Query: 1   MEHNTVRFVDNFSAG-----TRGASS---VEYFVEQGYAVLFVYRNNSIRPYIRHFSGAT 52
           +      FVDNF         +   S   +++ +    AV    R               
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--------------- 66

Query: 53  FLDCLQVSADNPDTISVKPEVVPKLRP----ILDRYARVKRDSLLLSVEFTTLAEYLW-- 106
               L       + + V+  V   LR     ++      +R   +++  +    + L+  
Sbjct: 67  LFWTLL---SKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 107 ----------------LLRTVCESLQDEGNRVLLY---------LAAAVADFYIPADQMS 141
                            LR     L+   N VL+          +A  V   Y    +M 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 142 GG-------------TTVPMEHNTVRFVD-NFSAGTRGASSVEYFVEQGYAVLFVYSTCV 187
                          T + M    +  +D N+++ +  +S+++  +    A L       
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL------- 234

Query: 188 ESAIHLAEY---LWLLRTVCES--LQ--DGGNRVLLYLA-AAVADFYIPADQMVSTCVES 239
              +    Y   L +L  V  +      +   ++LL      V DF       +S    +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-------LSAATTT 287

Query: 240 AVHLAEYLWLLRTVCESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQ 299
            + L  +   L T  E            L     D       +P  ++ + + P  +S  
Sbjct: 288 HISLDHHSMTL-TPDEVKS---------LLLKYLD--CRPQDLPR-EVLTTN-PRRLS-- 331

Query: 300 LVPKMLSPLTSVWSPRAFVVSFKLETDPNILVKKARAALD-----KYHHKLVI 347
           ++ + +    + W     V   KL T    +++ +   L+     K   +L +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTT----IIESSLNVLEPAEYRKMFDRLSV 380



 Score = 36.8 bits (84), Expect = 0.016
 Identities = 48/389 (12%), Positives = 107/389 (27%), Gaps = 111/389 (28%)

Query: 7   RFVDNFSAG------TRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVS 60
           +  + F+        TR     ++        + +  ++           +  L  L   
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCR 314

Query: 61  AD---------NPDTISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTV 111
                      NP  +S+  E +       D +  V  D L   +E ++L          
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSL---------- 363

Query: 112 CESLQDEGNRVLLYLAAAV--ADFYIPADQMS-----GGTTVPMEHNTVRFVDNFSAGTR 164
              L+    R  ++   +V     +IP   +S        +  M    V  +  +S   +
Sbjct: 364 -NVLEPAEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEK 419

Query: 165 GASSVEYFVEQGYAVLFVYSTCVES--AIH--LAEYLWLLRTVCES-----LQDGGNRVL 215
                   +    ++       +E+  A+H  + ++  + +T           D      
Sbjct: 420 QPKESTISI---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----- 471

Query: 216 LYLAAAVADFYIPADQMVSTCVESAVHLAE-------------YL---WL---LRTVCES 256
            Y        +I              HL               +L   +L   +R    +
Sbjct: 472 -YFY-----SHI------------GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 257 LQDGGNRVLLYLAAAVADF-----YIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSV 311
               G      +   +        YI  D  P+++           L  +PK+   L  +
Sbjct: 514 WNASG-----SILNTLQQLKFYKPYI-CDNDPKYERLVNA-----ILDFLPKIEENL--I 560

Query: 312 WSPRAFVVSFKLETDPNILVKKARAALDK 340
            S    ++   L  +   + ++A   + +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589


>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich,
           flavoprotein, structural genomics protein structure
           initiative; 1.83A {Streptococcus pneumoniae}
          Length = 232

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 31/149 (20%)

Query: 269 AAAVADF------------------YIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTS 310
           + AV+D+                     + Q  + K+ S D   V+ L+  PK++S +  
Sbjct: 91  SMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLV-K 149

Query: 311 VWSPRAFVVSFKLETD--PNILVKKARAALDKYHHKLVIGNLL---HTRKHQVILVSAEA 365
            W+P   ++ FKL  D   + LV  AR +L K    L+I N L      +H+ I V    
Sbjct: 150 EWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLTQISADQHRAIFVEKNQ 209

Query: 366 EVPITLSEEDKASGVEIEKYLVQEVTRRH 394
              +      K    EI + L++++   H
Sbjct: 210 LQTVQ----TKE---EIAELLLEKIQAYH 231


>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET:
           PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB:
           1u7w_A* 1u7u_A* 1u80_A*
          Length = 226

 Score = 36.3 bits (85), Expect = 0.009
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 269 AAAVADFYIPADQMPEHKM---QSGDGPPVISLQLVPKMLSPLTSVWSPRAFVVSFKLET 325
            AAVAD Y  A  +   K+    +      I +   P +++ + ++   R +VV F  ET
Sbjct: 94  CAAVAD-YRAA-TVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAET 151

Query: 326 DPNILVKKARAALDKYHHKLVIGN 349
           + N + + AR    + +  L+  N
Sbjct: 152 N-N-VEEYARQKRIRKNLDLICAN 173


>2hp7_A Flagellar motor switch protein FLIM; bacterial chemotaxis,
           flagellar switch complex, signaling protein; 2.00A
           {Thermotoga maritima} PDB: 3soh_A
          Length = 183

 Score = 30.0 bits (67), Expect = 0.87
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 18/100 (18%)

Query: 64  PDTISVKPEVVPKLRPILDRYARVKRDSLL----------LSVEFTTLAEYLWLLRT--- 110
           P   S   E +   + I + + R     L           +S++  T  E++  +     
Sbjct: 1   PSKFS--KEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEISIDQLTYEEFIRSVMIPSF 58

Query: 111 -VCESLQDEGNRVLLYLAAAVADFYIPADQMSGGTTVPME 149
            V  +        +  +   +    +  D + GG      
Sbjct: 59  IVIFTGDVFEGSAIFEMRLDLFYTML--DIIMGGPGENPP 96


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 29.3 bits (65), Expect = 2.0
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 15  GTRG-ASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLD-------CLQVSADNP-D 65
           G+ G A  V Y  E     +       + P IR  SG    D        L ++ + P +
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYE-PFE 172

Query: 66  TISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLW 106
            I+++   +P    IL        ++     E      + W
Sbjct: 173 NIAIE---LPP-NEILFSENNDMDNNNDGVDELNKKCTF-W 208


>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
           oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
           brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
           3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
           3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
           3jq6_A* ...
          Length = 288

 Score = 29.2 bits (66), Expect = 2.1
 Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 165 GASSVEYFVEQGYAVLFVYSTCVESAIHLAEYLWLLRTVCESLQDGGNRVLLYLAAAVAD 224
           G +      + GY V+  Y    E+A+ LA+ L          ++  N  ++   A + +
Sbjct: 36  GRAIAVKLHQTGYRVVIHYHNSAEAAVSLADEL---------NKERSNTAVVC-QADLTN 85

Query: 225 FYIP---ADQMVSTCVE 238
             +     ++++++C  
Sbjct: 86  SNVLPASCEEIINSCFR 102


>3mqz_A Uncharacterized conserved protein DUF1054; alpha-beta fold,
           structural genomics, PSI-2, protein structu initiative;
           HET: MSE; 1.30A {Leptospirillum rubarum}
          Length = 215

 Score = 28.4 bits (63), Expect = 3.6
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 51  ATFLDCLQVSADNPDTISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRT 110
               D       + D ++  P+V    R   +R   +K  SL +    T     L  +  
Sbjct: 141 KKVGDLRDFGPVHDDPMADPPKVEWDPRVFGERLGSLKSASLDIGFRVTF-DTSLAGIVK 199

Query: 111 VCESL 115
              + 
Sbjct: 200 TIRTF 204


>1qst_A TGCN5 histone acetyl transferase; GCN5-related N-acetyltransferase,
           COA binding protein; HET: EPE; 1.70A {Tetrahymena
           thermophila} SCOP: d.108.1.1 PDB: 1m1d_A* 1pu9_A*
           1pua_A* 5gcn_A* 1qsr_A* 1q2d_A* 1q2c_A* 1qsn_A*
          Length = 160

 Score = 27.9 bits (62), Expect = 4.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 20  SSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDC 56
            ++ YF +QG+           + YI+ + G T ++C
Sbjct: 116 FAIGYFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMEC 152


>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL;
          1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A*
          3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A
          1l7q_A 1l7r_A
          Length = 587

 Score = 28.8 bits (64), Expect = 4.2
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 10 DNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVSADNPDTI 67
           +  A +  +++   FV  GYAV+        R      S   F+  +   AD  DT+
Sbjct: 47 FDVFAWSTQSTNWLEFVRDGYAVVIQ----DTRG--LFASEGEFVPHVDDEADAEDTL 98


>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase,
           structural genomics, marseil structural genomics program
           @ AFMB, MSGP, vizier; 2.35A {Kunjin virus} PDB: 2hcs_A
           2hfz_A
          Length = 595

 Score = 27.7 bits (61), Expect = 7.9
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 25/140 (17%)

Query: 261 GNRVLLYLAAAV-----ADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSVWSPR 315
           G+R + ++                +     +  SG G   + LQ +  +L  + +    R
Sbjct: 162 GSRAIWFMWLGARFLEFEALGFLNEDHWLGRKNSGGGVEGLGLQKLGYILREVGTRPGGR 221

Query: 316 AF----------VVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQVILV---- 361
            +          +    LE +  +L       LD  H +L    +  T +H+V+ V    
Sbjct: 222 IYADDTAGWDTRITRADLENEAKVL-----ELLDGEHRRLARAIIELTYRHKVVKVMRPA 276

Query: 362 -SAEAEVPITLSEEDKASGV 380
                 + +   E+ + SG 
Sbjct: 277 ADGRTVMDVISREDQRGSGQ 296


>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad,
           alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus}
           SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
          Length = 652

 Score = 27.4 bits (60), Expect = 9.7
 Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 13/61 (21%)

Query: 131 ADFYIPADQMSGGTTVPM---------EHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLF 181
               IP +        P+         +    R  +  +         + FVE GY  +F
Sbjct: 52  TVIVIPKN----ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF 107

Query: 182 V 182
            
Sbjct: 108 Q 108


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,155,660
Number of extensions: 372608
Number of successful extensions: 819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 19
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)