RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14323
(400 letters)
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 166 bits (420), Expect = 4e-49
Identities = 106/265 (40%), Positives = 156/265 (58%), Gaps = 8/265 (3%)
Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYS-TCVESAIHLAEYLWL 199
SGGT VP+E VRF+DNFS+G RGA+S E F+ GY VLF+Y H
Sbjct: 25 SGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTW 84
Query: 200 LRTVCESLQDGGNRVLLYLAAAVADFYIPADQMVSTCVESAVHL-------AEYLWLLRT 252
L + S + L + A + + L A+YL LL+
Sbjct: 85 LSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQA 144
Query: 253 VCESLQDGGNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSVW 312
++L G + YLAAAV+DFY+P +MPEHK++S GP I++++VPK+LSPL W
Sbjct: 145 AAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLVKDW 204
Query: 313 SPRAFVVSFKLETDPNILVKKARAALDKYHHKLVIGNLLHTRKHQVILVSAEAEVPITLS 372
+P+AF++SFKLETDP I++ +AR AL+ Y H++V+ N+L +R+ V++V+ ++E + LS
Sbjct: 205 APKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVLIVTKDSETKLLLS 264
Query: 373 EEDKASGVEIEKYLVQEVTRRHEAF 397
EE+ GVEIE+ +V + RH AF
Sbjct: 265 EEEIEKGVEIEEKIVDNLQSRHTAF 289
Score = 94.9 bits (235), Expect = 1e-22
Identities = 58/143 (40%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 2 EHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHFSGATFLDCLQVSA 61
E VRF+DNFS+G RGA+S E F+ GY VLF+YR S PY F T+L L+ S
Sbjct: 33 EARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSG 92
Query: 62 D---NPDTISVKPEVVPKLRPILDRYARVKRDSLLLSVEFTTLAEYLWLLRTVCESLQDE 118
++ + +P L Y L VEFTTLA+YL LL+ ++L
Sbjct: 93 PALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPL 152
Query: 119 GNRVLLYLAAAVADFYIPADQMS 141
G + YLAAAV+DFY+P +M
Sbjct: 153 GPSAMFYLAAAVSDFYVPVSEMP 175
>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein
CoaBC, phosphopantothenoylcysteine synthase domain
(CoaB) {Escherichia coli [TaxId: 562]}
Length = 223
Score = 40.9 bits (95), Expect = 9e-05
Identities = 36/262 (13%), Positives = 80/262 (30%), Gaps = 62/262 (23%)
Query: 141 SGGTTVPMEHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLFVYSTCVESAIHLAEYLWLL 200
+G T P++ VR++ + S+G G+A +A
Sbjct: 13 AGPTREPLD--PVRYISDHSSGK-----------MGFA--------------IAAAA--- 42
Query: 201 RTVCESLQDGGNRVLLYLAAAVADFYIPADQMVSTCVESAVHLAEYLWLLRTVCESLQDG 260
+ G N L+ V+ L + +V +
Sbjct: 43 ------ARRGANVTLVS------GPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQ---- 86
Query: 261 GNRVLLYLAAAVADFYIPADQMPEHKMQSGDGPPVISLQLVPKMLSPLTSVWSPRAFVVS 320
+ + AA K + I + P +++ + ++ R +VV
Sbjct: 87 --NIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVG 144
Query: 321 FKLETDPNILVKKARAALDKYHHKLVIGNLLH-------TRKHQVILVSAEAEVPITLSE 373
F ET+ + + + + L+ N + + + + L + + L
Sbjct: 145 FAAETNNVEEYARQKRI--RKNLDLICANDVSQPTQGFNSDNNALHLFWQDGD--KVLPL 200
Query: 374 EDKASGVEIEKYLVQEVTRRHE 395
E K + + L+ E+ R++
Sbjct: 201 ERKE---LLGQLLLDEIVTRYD 219
Score = 30.2 bits (67), Expect = 0.32
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 6 VRFVDNFSAGTRGASSVEYFVEQGYAVLFVYRNNSIRPYIRHF 48
VR++ + S+G G + +G V V S+
Sbjct: 23 VRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVK 65
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe
crab (Limulus polyphemus) [TaxId: 6850]}
Length = 94
Score = 26.6 bits (59), Expect = 1.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 49 SGATFLDCLQVSADNPDTIS 68
GAT LD +Q +N D+
Sbjct: 45 MGATLLDVIQSGVENLDSGV 64
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia
trachomatis [TaxId: 813]}
Length = 213
Score = 26.4 bits (57), Expect = 5.6
Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Query: 155 FVDNFSAGTRGASSVEYFVEQGYAVLFVYSTCVESAIHLAEYLWLLRTVCESLQD--GGN 212
F +S G ++ + + Y + + + + + L + + ++L D G
Sbjct: 20 FYVKWSKGELTKEQLQAYAKDYYLHIKAFPKYLSAIHSRCDDLEARKLLLDNLMDEENGY 79
Query: 213 RVLLYLAAAVADFYIPADQMVSTCVESAVHLAEYLWLLRTVC 254
+ L + + S A+ +R
Sbjct: 80 PNHIDLWKQFVFALGVTPEELEAHEPSEAAKAKVATFMRWCT 121
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 26.2 bits (57), Expect = 5.9
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 195 EYLWLLRTVCESLQ-DGGNRVLLYLAA--AVADFYIPA 229
E +W++ +L DG LAA A+ + +PA
Sbjct: 128 EKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 165
Score = 26.2 bits (57), Expect = 5.9
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 245 EYLWLLRTVCESLQ-DGGNRVLLYLAA--AVADFYIPA 279
E +W++ +L DG LAA A+ + +PA
Sbjct: 128 EKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 165
>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase
{Acetobacter pasteurianus [TaxId: 438]}
Length = 385
Score = 26.6 bits (57), Expect = 6.7
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 13/61 (21%)
Query: 131 ADFYIPADQMSGGTTVPM---------EHNTVRFVDNFSAGTRGASSVEYFVEQGYAVLF 181
IP + P+ + R + + + FVE GY +F
Sbjct: 43 TVIVIPKN----ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF 98
Query: 182 V 182
Sbjct: 99 Q 99
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 25.2 bits (55), Expect = 9.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 19 ASSVEYFVEQGYAVLFVYRNNSI 41
+EY + QG+AV Y ++
Sbjct: 20 TKQLEYCLNQGWAVGLEYTDDPH 42
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 25.9 bits (57), Expect = 9.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 23 EYFVEQGYAVLFVYRN 38
EYF + G L +Y +
Sbjct: 161 EYFRDNGKHALIIYDD 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.398
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,433,722
Number of extensions: 64810
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 14
Length of query: 400
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,213,086
Effective search space: 379695918
Effective search space used: 379695918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)