Query psy14324
Match_columns 203
No_of_seqs 123 out of 1233
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 16:57:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 7.9E-39 1.7E-43 234.4 17.9 190 2-198 9-203 (211)
2 PLN02473 glutathione S-transfe 100.0 3.8E-37 8.2E-42 226.2 17.6 196 1-198 1-212 (214)
3 PTZ00057 glutathione s-transfe 100.0 1.1E-35 2.4E-40 216.8 21.9 193 1-201 1-203 (205)
4 PRK13972 GSH-dependent disulfi 100.0 2.6E-36 5.7E-41 221.8 16.7 194 3-200 1-208 (215)
5 PRK15113 glutathione S-transfe 100.0 8.2E-36 1.8E-40 218.9 18.4 190 2-199 4-210 (214)
6 KOG0406|consensus 100.0 1.4E-35 3E-40 212.7 17.7 189 4-197 10-211 (231)
7 KOG1695|consensus 100.0 7.3E-35 1.6E-39 207.8 19.7 203 1-203 1-206 (206)
8 PLN02395 glutathione S-transfe 100.0 3E-35 6.6E-40 216.2 18.3 196 1-200 1-213 (215)
9 TIGR01262 maiA maleylacetoacet 100.0 5.9E-35 1.3E-39 214.0 15.8 192 5-199 1-206 (210)
10 PRK10542 glutathionine S-trans 100.0 1.4E-34 3.1E-39 210.6 17.3 187 4-198 1-198 (201)
11 PRK11752 putative S-transferas 100.0 3.9E-34 8.5E-39 215.6 18.4 195 3-200 44-261 (264)
12 PRK10357 putative glutathione 100.0 2.8E-33 6.1E-38 203.9 17.2 189 4-195 1-198 (202)
13 COG0625 Gst Glutathione S-tran 100.0 7.8E-33 1.7E-37 202.8 18.3 186 4-192 1-199 (211)
14 KOG0868|consensus 100.0 1.1E-33 2.5E-38 191.4 11.0 193 3-200 5-210 (217)
15 KOG0867|consensus 100.0 2.7E-31 5.9E-36 195.5 15.9 191 4-196 3-208 (226)
16 PLN02378 glutathione S-transfe 100.0 2.3E-31 4.9E-36 195.1 14.7 177 8-197 16-199 (213)
17 TIGR00862 O-ClC intracellular 100.0 6.1E-31 1.3E-35 193.3 15.7 177 9-197 16-220 (236)
18 PLN02817 glutathione dehydroge 100.0 1.9E-30 4.2E-35 194.6 17.0 175 9-196 70-250 (265)
19 PRK10387 glutaredoxin 2; Provi 100.0 1.1E-30 2.4E-35 191.4 14.8 181 4-191 1-207 (210)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 7.2E-29 1.6E-33 181.3 14.9 178 5-191 1-206 (209)
21 KOG4420|consensus 99.9 1.1E-25 2.4E-30 161.3 14.3 195 3-198 26-288 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 6.3E-24 1.4E-28 177.3 17.5 161 1-197 1-172 (722)
23 KOG1422|consensus 99.9 2E-20 4.3E-25 130.7 12.7 172 11-193 20-201 (221)
24 KOG3029|consensus 99.8 7.2E-20 1.6E-24 133.0 10.5 182 3-187 90-354 (370)
25 cd03041 GST_N_2GST_N GST_N fam 99.8 3.9E-20 8.4E-25 113.8 7.4 73 3-75 1-77 (77)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 3.3E-20 7.2E-25 112.7 6.9 69 4-72 1-73 (73)
27 cd03059 GST_N_SspA GST_N famil 99.8 1.1E-19 2.4E-24 110.8 8.0 72 4-75 1-73 (73)
28 PF13417 GST_N_3: Glutathione 99.8 2.4E-20 5.3E-25 114.2 4.8 71 6-76 1-72 (75)
29 cd03045 GST_N_Delta_Epsilon GS 99.8 2.1E-19 4.6E-24 109.8 7.7 70 4-73 1-74 (74)
30 cd03058 GST_N_Tau GST_N family 99.8 2.5E-19 5.5E-24 109.5 7.7 72 4-75 1-74 (74)
31 cd03076 GST_N_Pi GST_N family, 99.8 4.1E-19 8.8E-24 108.1 7.1 71 4-74 2-73 (73)
32 cd03048 GST_N_Ure2p_like GST_N 99.8 6.4E-19 1.4E-23 109.6 8.0 73 3-76 1-80 (81)
33 cd03050 GST_N_Theta GST_N fami 99.8 6.1E-19 1.3E-23 108.3 7.6 72 4-75 1-76 (76)
34 cd03037 GST_N_GRX2 GST_N famil 99.8 3.6E-19 7.8E-24 107.9 6.5 70 4-73 1-71 (71)
35 cd03053 GST_N_Phi GST_N family 99.8 6.1E-19 1.3E-23 108.4 7.5 71 4-74 2-76 (76)
36 cd03039 GST_N_Sigma_like GST_N 99.8 6.1E-19 1.3E-23 107.2 6.9 70 4-73 1-72 (72)
37 cd03060 GST_N_Omega_like GST_N 99.8 1.2E-18 2.7E-23 105.5 7.0 68 4-71 1-70 (71)
38 cd03061 GST_N_CLIC GST_N famil 99.8 1.2E-18 2.6E-23 108.9 6.8 67 10-76 20-87 (91)
39 cd03056 GST_N_4 GST_N family, 99.8 1.6E-18 3.6E-23 105.6 7.3 69 4-72 1-73 (73)
40 cd03077 GST_N_Alpha GST_N fami 99.8 2.7E-18 5.8E-23 106.0 8.2 76 3-78 1-79 (79)
41 cd03044 GST_N_EF1Bgamma GST_N 99.8 1.5E-18 3.2E-23 106.3 6.8 70 4-73 1-74 (75)
42 cd03047 GST_N_2 GST_N family, 99.8 2.2E-18 4.7E-23 105.0 7.3 69 4-72 1-73 (73)
43 cd03046 GST_N_GTT1_like GST_N 99.8 5.2E-18 1.1E-22 104.2 8.6 72 4-76 1-76 (76)
44 cd03080 GST_N_Metaxin_like GST 99.8 3.9E-18 8.5E-23 104.4 7.8 68 3-76 1-75 (75)
45 cd03075 GST_N_Mu GST_N family, 99.8 5.3E-18 1.2E-22 105.4 8.2 72 4-75 1-82 (82)
46 cd03057 GST_N_Beta GST_N famil 99.8 4.8E-18 1E-22 104.6 7.6 72 4-76 1-77 (77)
47 cd03051 GST_N_GTT2_like GST_N 99.8 3.6E-18 7.7E-23 104.3 6.8 69 4-72 1-74 (74)
48 KOG4244|consensus 99.8 4.3E-17 9.3E-22 118.0 13.3 176 4-187 46-272 (281)
49 cd03209 GST_C_Mu GST_C family, 99.7 2.9E-17 6.4E-22 109.9 11.4 114 84-203 2-115 (121)
50 cd03055 GST_N_Omega GST_N fami 99.7 4.5E-18 9.7E-23 107.5 6.9 70 3-72 18-89 (89)
51 cd03042 GST_N_Zeta GST_N famil 99.7 4.9E-18 1.1E-22 103.5 6.9 69 4-72 1-73 (73)
52 cd03040 GST_N_mPGES2 GST_N fam 99.7 4.5E-18 9.7E-23 104.7 6.6 73 3-76 1-77 (77)
53 cd03049 GST_N_3 GST_N family, 99.7 5.4E-18 1.2E-22 103.3 6.5 69 4-72 1-73 (73)
54 cd03208 GST_C_Alpha GST_C fami 99.7 8.8E-17 1.9E-21 109.7 12.5 118 83-202 2-120 (137)
55 cd03210 GST_C_Pi GST_C family, 99.7 1.8E-16 3.8E-21 106.8 12.0 115 83-203 2-118 (126)
56 PF02798 GST_N: Glutathione S- 99.7 2.9E-17 6.2E-22 100.6 6.9 69 5-73 2-76 (76)
57 COG2999 GrxB Glutaredoxin 2 [P 99.7 9E-17 1.9E-21 109.4 8.8 183 4-192 1-208 (215)
58 cd03038 GST_N_etherase_LigE GS 99.7 9.2E-17 2E-21 100.5 7.8 66 10-76 14-84 (84)
59 cd03043 GST_N_1 GST_N family, 99.7 2.1E-16 4.6E-21 96.0 6.0 65 8-72 6-73 (73)
60 PF13409 GST_N_2: Glutathione 99.7 9.1E-17 2E-21 96.8 4.1 64 11-74 1-70 (70)
61 cd00570 GST_N_family Glutathio 99.7 5.5E-16 1.2E-20 93.4 7.4 69 4-72 1-71 (71)
62 cd03054 GST_N_Metaxin GST_N fa 99.7 6.1E-16 1.3E-20 93.9 7.2 65 4-74 1-72 (72)
63 COG0435 ECM4 Predicted glutath 99.6 1.2E-15 2.6E-20 111.1 9.7 184 4-195 52-284 (324)
64 cd03186 GST_C_SspA GST_N famil 99.6 7.8E-15 1.7E-19 96.0 10.1 105 82-194 1-106 (107)
65 cd03196 GST_C_5 GST_C family, 99.6 4.2E-15 9.2E-20 98.4 8.7 111 80-194 2-114 (115)
66 cd03188 GST_C_Beta GST_C famil 99.6 4.6E-15 1E-19 98.1 8.8 109 84-195 2-114 (114)
67 cd03184 GST_C_Omega GST_C fami 99.6 8.1E-15 1.7E-19 98.5 9.0 108 84-198 2-114 (124)
68 cd03190 GST_C_ECM4_like GST_C 99.6 1.5E-14 3.2E-19 99.4 10.2 109 83-197 3-118 (142)
69 KOG2903|consensus 99.6 2.3E-15 5E-20 108.6 6.4 184 4-194 38-285 (319)
70 cd03189 GST_C_GTT1_like GST_C 99.6 1.7E-14 3.7E-19 96.2 9.5 108 79-189 2-119 (119)
71 cd03185 GST_C_Tau GST_C family 99.6 1.7E-14 3.7E-19 97.1 9.6 109 83-198 2-116 (126)
72 KOG3027|consensus 99.6 2.7E-13 5.8E-18 94.8 14.2 171 10-187 32-247 (257)
73 cd03187 GST_C_Phi GST_C family 99.6 9.6E-15 2.1E-19 97.2 6.8 72 123-195 47-118 (118)
74 cd03203 GST_C_Lambda GST_C fam 99.6 7.3E-14 1.6E-18 93.2 10.7 105 81-197 1-111 (120)
75 cd03182 GST_C_GTT2_like GST_C 99.6 3.2E-14 6.9E-19 94.6 8.9 109 81-191 1-117 (117)
76 cd03200 GST_C_JTV1 GST_C famil 99.5 6.3E-14 1.4E-18 89.6 9.3 95 68-188 1-96 (96)
77 cd03191 GST_C_Zeta GST_C famil 99.5 2E-14 4.2E-19 96.2 7.2 114 83-198 2-120 (121)
78 PF00043 GST_C: Glutathione S- 99.5 1.4E-13 3E-18 88.0 9.5 68 120-189 27-95 (95)
79 cd03183 GST_C_Theta GST_C fami 99.5 4.9E-14 1.1E-18 94.9 7.6 75 122-197 46-122 (126)
80 cd03177 GST_C_Delta_Epsilon GS 99.5 6E-14 1.3E-18 93.4 7.3 110 84-197 2-112 (118)
81 cd03192 GST_C_Sigma_like GST_C 99.5 2.5E-13 5.4E-18 88.3 9.7 100 84-185 2-104 (104)
82 cd03198 GST_C_CLIC GST_C famil 99.5 2.1E-13 4.5E-18 91.7 9.5 98 95-197 8-124 (134)
83 cd03178 GST_C_Ure2p_like GST_C 99.5 1.2E-14 2.6E-19 96.0 3.3 108 84-195 1-112 (113)
84 cd03181 GST_C_EFB1gamma GST_C 99.5 1.2E-13 2.6E-18 92.6 7.2 112 85-198 2-117 (123)
85 cd03180 GST_C_2 GST_C family, 99.5 1.7E-13 3.7E-18 90.0 7.7 105 84-191 2-110 (110)
86 cd03079 GST_N_Metaxin2 GST_N f 99.5 2.7E-13 5.8E-18 81.5 7.1 60 10-74 15-74 (74)
87 cd03195 GST_C_4 GST_C family, 99.5 8E-13 1.7E-17 87.4 9.5 111 82-197 1-113 (114)
88 cd03201 GST_C_DHAR GST_C famil 99.4 6.8E-13 1.5E-17 88.5 8.7 74 124-197 33-110 (121)
89 cd03207 GST_C_8 GST_C family, 99.4 5.5E-13 1.2E-17 86.6 7.3 70 124-197 33-102 (103)
90 PF13410 GST_C_2: Glutathione 99.4 1.5E-12 3.2E-17 78.2 6.5 62 122-184 7-69 (69)
91 cd03194 GST_C_3 GST_C family, 99.4 7.8E-12 1.7E-16 82.6 9.0 71 121-196 41-113 (114)
92 cd03204 GST_C_GDAP1 GST_C fami 99.3 4.4E-12 9.4E-17 82.7 6.9 68 123-191 31-111 (111)
93 PF14497 GST_C_3: Glutathione 99.3 6.6E-12 1.4E-16 80.9 7.4 96 82-187 3-99 (99)
94 PRK10638 glutaredoxin 3; Provi 99.3 8.2E-12 1.8E-16 77.7 6.8 73 1-73 1-75 (83)
95 cd03179 GST_C_1 GST_C family, 99.3 2.2E-12 4.7E-17 83.9 4.3 100 84-186 2-105 (105)
96 cd03206 GST_C_7 GST_C family, 99.3 1.1E-11 2.5E-16 79.9 6.1 66 123-191 35-100 (100)
97 cd03202 GST_C_etherase_LigE GS 99.3 3.6E-11 7.8E-16 80.6 7.9 65 123-188 60-124 (124)
98 TIGR02190 GlrX-dom Glutaredoxi 99.2 2.6E-11 5.7E-16 74.7 5.6 70 3-72 9-79 (79)
99 KOG3028|consensus 99.2 1.9E-09 4.1E-14 80.6 15.5 170 11-187 16-233 (313)
100 cd03078 GST_N_Metaxin1_like GS 99.1 2.5E-10 5.3E-15 69.0 6.9 65 4-74 1-72 (73)
101 cd00299 GST_C_family Glutathio 99.1 9.5E-11 2.1E-15 75.2 5.2 62 123-185 38-100 (100)
102 cd03193 GST_C_Metaxin GST_C fa 99.1 1.3E-10 2.7E-15 73.2 5.2 62 124-186 22-88 (88)
103 cd03029 GRX_hybridPRX5 Glutare 99.1 3.1E-10 6.7E-15 68.6 6.0 70 3-72 2-72 (72)
104 cd03205 GST_C_6 GST_C family, 99.1 5.2E-10 1.1E-14 71.8 7.0 70 112-185 28-98 (98)
105 cd03197 GST_C_mPGES2 GST_C fam 99.0 5.1E-10 1.1E-14 76.1 5.8 64 124-187 82-145 (149)
106 cd03211 GST_C_Metaxin2 GST_C f 99.0 7.8E-10 1.7E-14 74.3 4.9 62 124-186 60-126 (126)
107 PF14834 GST_C_4: Glutathione 99.0 7.2E-09 1.6E-13 66.4 8.2 108 81-197 1-114 (117)
108 cd03027 GRX_DEP Glutaredoxin ( 98.9 2.3E-09 5.1E-14 64.9 5.7 67 3-69 2-70 (73)
109 cd03212 GST_C_Metaxin1_3 GST_C 98.9 4.5E-09 9.8E-14 71.5 5.9 63 124-187 67-134 (137)
110 TIGR02196 GlrX_YruB Glutaredox 98.9 6.6E-09 1.4E-13 62.8 5.7 69 3-71 1-73 (74)
111 PRK10329 glutaredoxin-like pro 98.8 6.1E-09 1.3E-13 64.2 5.1 61 3-63 2-63 (81)
112 cd02066 GRX_family Glutaredoxi 98.8 1.4E-08 3E-13 60.9 5.8 67 4-70 2-70 (72)
113 PRK11200 grxA glutaredoxin 1; 98.8 2.1E-08 4.5E-13 62.6 6.7 75 3-77 2-85 (85)
114 cd03418 GRX_GRXb_1_3_like Glut 98.8 1.9E-08 4.1E-13 61.2 5.8 70 3-72 1-73 (75)
115 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.7E-08 3.8E-13 60.7 5.1 61 4-64 2-64 (73)
116 TIGR02181 GRX_bact Glutaredoxi 98.7 3.8E-08 8.3E-13 60.5 6.0 70 4-73 1-72 (79)
117 COG0695 GrxC Glutaredoxin and 98.7 6.8E-08 1.5E-12 59.4 6.8 68 3-70 2-73 (80)
118 TIGR02183 GRXA Glutaredoxin, G 98.7 7.1E-08 1.5E-12 60.3 6.5 73 4-76 2-83 (86)
119 TIGR02200 GlrX_actino Glutared 98.6 9.6E-08 2.1E-12 58.2 5.1 62 3-64 1-66 (77)
120 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.1E-07 2.4E-12 57.3 4.6 56 4-59 1-57 (72)
121 PF00462 Glutaredoxin: Glutare 98.5 5.6E-08 1.2E-12 56.4 2.4 58 4-61 1-60 (60)
122 TIGR02189 GlrX-like_plant Glut 98.5 7.2E-07 1.6E-11 57.2 6.6 69 3-71 9-82 (99)
123 cd03419 GRX_GRXh_1_2_like Glut 98.5 7.3E-07 1.6E-11 55.0 6.2 70 4-73 2-76 (82)
124 TIGR02180 GRX_euk Glutaredoxin 98.4 1.9E-06 4.1E-11 53.4 6.7 70 4-73 1-77 (84)
125 PHA03050 glutaredoxin; Provisi 98.4 1.7E-06 3.7E-11 56.3 6.6 67 3-69 14-88 (108)
126 TIGR00365 monothiol glutaredox 98.2 5.9E-06 1.3E-10 52.8 6.4 69 3-71 13-88 (97)
127 PF10568 Tom37: Outer mitochon 98.2 6.9E-06 1.5E-10 49.2 5.7 55 11-71 13-71 (72)
128 cd03028 GRX_PICOT_like Glutare 98.1 1E-05 2.2E-10 50.9 6.1 68 4-71 10-84 (90)
129 PRK12759 bifunctional gluaredo 97.9 3.1E-05 6.8E-10 62.3 7.1 69 1-69 1-79 (410)
130 COG4545 Glutaredoxin-related p 97.9 6.2E-05 1.3E-09 44.3 5.5 62 1-62 1-77 (85)
131 cd03031 GRX_GRX_like Glutaredo 97.8 6.6E-05 1.4E-09 51.5 6.3 70 3-72 1-82 (147)
132 PRK10824 glutaredoxin-4; Provi 97.6 0.00033 7.1E-09 46.0 6.0 68 4-71 17-91 (115)
133 cd02973 TRX_GRX_like Thioredox 97.5 0.00037 8.1E-09 41.0 4.9 58 3-62 2-64 (67)
134 KOG1752|consensus 97.3 0.0018 4E-08 41.6 7.2 71 3-73 15-90 (104)
135 PF04399 Glutaredoxin2_C: Glut 97.3 0.00065 1.4E-08 45.6 5.0 63 124-191 62-124 (132)
136 PRK10026 arsenate reductase; P 97.3 0.0003 6.5E-09 47.8 3.2 35 1-35 1-35 (141)
137 KOG1147|consensus 97.2 0.00051 1.1E-08 55.8 4.1 115 56-195 43-162 (712)
138 PRK01655 spxA transcriptional 97.2 0.00043 9.2E-09 46.7 3.2 34 3-36 1-34 (131)
139 cd03036 ArsC_like Arsenate Red 97.2 0.00044 9.5E-09 45.3 3.1 33 4-36 1-33 (111)
140 cd03032 ArsC_Spx Arsenate Redu 97.1 0.00052 1.1E-08 45.2 3.3 33 3-35 1-33 (115)
141 cd02977 ArsC_family Arsenate R 97.1 0.00068 1.5E-08 43.9 3.2 32 4-35 1-32 (105)
142 PTZ00062 glutaredoxin; Provisi 97.1 0.0023 4.9E-08 46.5 6.2 69 3-71 114-189 (204)
143 cd03199 GST_C_GRX2 GST_C famil 97.0 0.0023 5.1E-08 42.6 5.1 62 124-190 63-124 (128)
144 PRK13344 spxA transcriptional 96.8 0.0013 2.7E-08 44.5 3.1 34 3-36 1-34 (132)
145 PRK12559 transcriptional regul 96.8 0.0014 2.9E-08 44.3 3.1 34 3-36 1-34 (131)
146 TIGR01617 arsC_related transcr 96.7 0.0016 3.5E-08 43.0 3.2 32 4-35 1-32 (117)
147 cd03033 ArsC_15kD Arsenate Red 96.6 0.0023 5E-08 42.0 3.1 33 3-35 1-33 (113)
148 cd03030 GRX_SH3BGR Glutaredoxi 96.5 0.01 2.2E-07 37.4 5.6 66 4-69 2-79 (92)
149 cd03035 ArsC_Yffb Arsenate Red 96.5 0.003 6.6E-08 40.8 3.1 32 4-35 1-32 (105)
150 COG1393 ArsC Arsenate reductas 96.4 0.0033 7.1E-08 41.5 3.0 33 3-35 2-34 (117)
151 TIGR00411 redox_disulf_1 small 96.4 0.0096 2.1E-07 36.2 4.7 57 3-59 2-62 (82)
152 PRK10853 putative reductase; P 96.3 0.0041 8.8E-08 41.1 3.0 32 4-35 2-33 (118)
153 PF05768 DUF836: Glutaredoxin- 96.2 0.0055 1.2E-07 37.6 3.1 55 3-58 1-57 (81)
154 TIGR01616 nitro_assoc nitrogen 96.2 0.0062 1.3E-07 40.7 3.2 33 3-35 2-34 (126)
155 PHA02125 thioredoxin-like prot 96.1 0.0088 1.9E-07 36.0 3.6 52 3-56 1-52 (75)
156 TIGR00412 redox_disulf_2 small 96.1 0.023 5E-07 34.3 5.2 55 4-62 3-61 (76)
157 cd03034 ArsC_ArsC Arsenate Red 95.6 0.014 3.1E-07 38.1 3.1 32 4-35 1-32 (112)
158 TIGR00014 arsC arsenate reduct 95.5 0.017 3.6E-07 38.0 3.2 32 4-35 1-32 (114)
159 cd03026 AhpF_NTD_C TRX-GRX-lik 95.5 0.018 4E-07 36.0 3.2 58 3-62 15-77 (89)
160 COG0278 Glutaredoxin-related p 95.3 0.1 2.2E-06 33.0 6.0 65 8-72 26-93 (105)
161 PF13192 Thioredoxin_3: Thiore 95.0 0.054 1.2E-06 32.7 4.1 56 4-63 3-62 (76)
162 cd01659 TRX_superfamily Thiore 93.5 0.16 3.4E-06 28.2 3.9 53 4-56 1-59 (69)
163 PF04908 SH3BGR: SH3-binding, 93.2 0.61 1.3E-05 29.7 6.3 68 1-69 1-85 (99)
164 PF11287 DUF3088: Protein of u 92.6 0.64 1.4E-05 30.1 5.8 67 11-77 23-109 (112)
165 PF11801 Tom37_C: Tom37 C-term 91.8 0.46 9.9E-06 33.5 4.8 41 125-165 112-155 (168)
166 PF00085 Thioredoxin: Thioredo 89.9 1.4 3.1E-05 27.5 5.6 69 4-73 21-102 (103)
167 PF03960 ArsC: ArsC family; I 89.8 0.25 5.3E-06 32.1 1.9 29 7-35 1-29 (110)
168 KOG0911|consensus 87.9 1.8 3.8E-05 31.8 5.3 65 8-72 150-216 (227)
169 cd02989 Phd_like_TxnDC9 Phosdu 87.5 1.9 4.2E-05 28.1 5.0 59 4-62 26-89 (113)
170 cd02975 PfPDO_like_N Pyrococcu 87.4 0.96 2.1E-05 29.5 3.5 53 4-56 25-81 (113)
171 PF09635 MetRS-N: MetRS-N bind 86.8 0.35 7.6E-06 31.8 1.1 28 48-75 33-62 (122)
172 TIGR01295 PedC_BrcD bacterioci 86.3 3.9 8.5E-05 27.1 6.0 58 4-61 27-103 (122)
173 PRK15317 alkyl hydroperoxide r 86.3 0.96 2.1E-05 38.0 3.8 61 3-63 119-182 (517)
174 TIGR03140 AhpF alkyl hydropero 86.2 0.88 1.9E-05 38.2 3.5 61 3-63 120-183 (515)
175 TIGR03143 AhpF_homolog putativ 85.1 2.3 5E-05 36.1 5.5 58 3-62 479-541 (555)
176 cd02949 TRX_NTR TRX domain, no 82.5 3.3 7.2E-05 25.9 4.3 58 4-61 17-80 (97)
177 TIGR02187 GlrX_arch Glutaredox 82.0 4.1 8.9E-05 29.9 5.2 54 4-57 137-193 (215)
178 cd02984 TRX_PICOT TRX domain, 81.1 2.4 5.2E-05 26.3 3.3 58 4-61 18-81 (97)
179 cd02947 TRX_family TRX family; 80.9 6.8 0.00015 23.4 5.3 54 4-59 14-74 (93)
180 cd02963 TRX_DnaJ TRX domain, D 78.3 5.5 0.00012 25.7 4.4 57 4-60 28-91 (111)
181 PTZ00051 thioredoxin; Provisio 75.6 6.5 0.00014 24.4 4.1 58 4-61 22-84 (98)
182 PRK09381 trxA thioredoxin; Pro 74.6 11 0.00024 23.9 5.1 58 4-61 25-88 (109)
183 TIGR02187 GlrX_arch Glutaredox 74.2 8.1 0.00018 28.3 4.8 56 4-59 23-88 (215)
184 cd03003 PDI_a_ERdj5_N PDIa fam 72.3 9.3 0.0002 23.9 4.2 56 4-59 22-83 (101)
185 cd02954 DIM1 Dim1 family; Dim1 71.8 7.3 0.00016 25.6 3.6 58 5-62 19-82 (114)
186 cd02959 ERp19 Endoplasmic reti 69.4 6.2 0.00013 25.9 2.9 59 4-62 23-91 (117)
187 cd02956 ybbN ybbN protein fami 69.4 17 0.00037 22.3 4.9 57 4-60 16-78 (96)
188 KOG2824|consensus 69.0 11 0.00024 28.7 4.4 58 14-71 149-212 (281)
189 cd02962 TMX2 TMX2 family; comp 67.5 13 0.00029 25.7 4.4 74 4-80 51-137 (152)
190 cd02953 DsbDgamma DsbD gamma f 67.1 8 0.00017 24.4 3.1 52 4-56 15-78 (104)
191 PRK10996 thioredoxin 2; Provis 66.1 22 0.00049 24.0 5.2 58 4-61 56-119 (139)
192 cd02957 Phd_like Phosducin (Ph 65.7 14 0.00029 23.9 4.0 59 4-63 28-91 (113)
193 cd02994 PDI_a_TMX PDIa family, 63.2 16 0.00034 22.8 3.9 56 4-59 20-82 (101)
194 PHA02278 thioredoxin-like prot 62.6 21 0.00046 22.8 4.3 58 4-61 18-85 (103)
195 KOG0190|consensus 61.9 25 0.00055 29.4 5.6 73 4-76 46-133 (493)
196 TIGR02681 phage_pRha phage reg 61.7 10 0.00022 24.6 2.7 25 51-75 2-27 (108)
197 cd02965 HyaE HyaE family; HyaE 61.7 12 0.00026 24.5 3.0 60 4-63 31-98 (111)
198 TIGR01068 thioredoxin thioredo 61.5 35 0.00075 20.8 6.3 56 4-59 18-79 (101)
199 KOG1668|consensus 61.1 6.3 0.00014 29.1 1.9 59 127-192 10-68 (231)
200 PF12290 DUF3802: Protein of u 60.8 14 0.00031 23.9 3.2 88 65-158 9-97 (113)
201 PTZ00443 Thioredoxin domain-co 55.5 71 0.0015 23.8 6.6 56 4-60 56-118 (224)
202 PF09098 Dehyd-heme_bind: Quin 55.2 9.2 0.0002 26.7 1.7 18 63-80 55-72 (167)
203 cd03004 PDI_a_ERdj5_C PDIa fam 55.1 14 0.0003 23.2 2.6 53 4-56 23-79 (104)
204 cd02951 SoxW SoxW family; SoxW 54.9 21 0.00045 23.4 3.5 16 4-19 18-33 (125)
205 cd02978 KaiB_like KaiB-like fa 54.0 15 0.00033 21.9 2.3 53 3-55 3-60 (72)
206 cd02997 PDI_a_PDIR PDIa family 53.3 35 0.00076 21.1 4.3 56 4-59 21-86 (104)
207 PF11732 Thoc2: Transcription- 52.2 31 0.00068 20.9 3.5 42 142-186 35-76 (77)
208 cd02987 Phd_like_Phd Phosducin 51.6 31 0.00068 24.4 4.1 59 4-63 87-150 (175)
209 cd03005 PDI_a_ERp46 PDIa famil 51.6 35 0.00076 21.0 4.1 56 4-59 20-84 (102)
210 cd02996 PDI_a_ERp44 PDIa famil 50.4 21 0.00047 22.6 2.9 56 4-59 22-89 (108)
211 COG3019 Predicted metal-bindin 49.9 29 0.00063 23.7 3.4 71 3-75 27-104 (149)
212 PRK13947 shikimate kinase; Pro 49.8 18 0.0004 25.0 2.7 32 1-32 1-32 (171)
213 cd02955 SSP411 TRX domain, SSP 49.5 41 0.00088 22.4 4.1 60 5-64 20-97 (124)
214 cd02952 TRP14_like Human TRX-r 48.9 73 0.0016 21.0 5.2 54 10-63 38-105 (119)
215 PF15608 PELOTA_1: PELOTA RNA 48.8 35 0.00077 21.8 3.5 33 1-33 55-87 (100)
216 cd02961 PDI_a_family Protein D 48.5 45 0.00098 20.1 4.2 53 4-56 19-77 (101)
217 KOG3425|consensus 47.9 82 0.0018 21.0 5.4 64 10-73 43-121 (128)
218 cd02948 TRX_NDPK TRX domain, T 46.4 67 0.0014 20.1 4.7 57 4-61 21-84 (102)
219 PF09413 DUF2007: Domain of un 46.4 12 0.00026 21.5 1.1 32 5-36 2-33 (67)
220 PTZ00102 disulphide isomerase; 46.2 79 0.0017 26.1 6.3 73 4-76 53-139 (477)
221 cd02950 TxlA TRX-like protein 46.0 58 0.0013 22.0 4.6 58 4-61 24-90 (142)
222 TIGR01764 excise DNA binding d 45.1 45 0.00097 17.2 3.3 25 48-72 24-48 (49)
223 cd03006 PDI_a_EFP1_N PDIa fami 43.8 22 0.00048 23.1 2.2 56 4-59 33-95 (113)
224 PF03852 Vsr: DNA mismatch end 43.4 25 0.00053 21.2 2.1 41 15-57 24-64 (75)
225 PRK13949 shikimate kinase; Pro 42.5 29 0.00063 24.3 2.8 32 1-32 1-32 (169)
226 COG3118 Thioredoxin domain-con 40.8 58 0.0013 25.4 4.2 73 4-76 47-131 (304)
227 TIGR01130 ER_PDI_fam protein d 40.4 97 0.0021 25.3 6.0 73 4-76 22-110 (462)
228 cd03065 PDI_b_Calsequestrin_N 40.4 59 0.0013 21.5 3.8 34 28-61 65-100 (120)
229 cd02988 Phd_like_VIAF Phosduci 39.3 34 0.00073 24.7 2.7 56 5-63 107-167 (192)
230 TIGR01126 pdi_dom protein disu 39.1 82 0.0018 19.2 4.3 54 3-56 16-75 (102)
231 cd03002 PDI_a_MPD1_like PDI fa 38.2 69 0.0015 20.0 3.9 53 4-56 22-80 (109)
232 COG5515 Uncharacterized conser 37.5 21 0.00046 20.3 1.1 21 4-24 3-27 (70)
233 COG0703 AroK Shikimate kinase 37.4 45 0.00097 23.7 3.0 32 2-33 3-34 (172)
234 PF12728 HTH_17: Helix-turn-he 37.0 69 0.0015 17.0 3.7 27 48-74 24-50 (51)
235 cd03000 PDI_a_TMX3 PDIa family 35.5 69 0.0015 20.0 3.5 53 4-56 19-78 (104)
236 cd03020 DsbA_DsbC_DsbG DsbA fa 35.4 47 0.001 23.8 3.0 22 3-24 80-101 (197)
237 PF13728 TraF: F plasmid trans 33.6 1.3E+02 0.0027 22.2 5.0 33 4-36 124-160 (215)
238 cd02995 PDI_a_PDI_a'_C PDIa fa 33.5 84 0.0018 19.2 3.7 52 4-56 22-79 (104)
239 KOG0910|consensus 33.4 86 0.0019 21.7 3.8 58 4-61 65-128 (150)
240 cd04911 ACT_AKiii-YclM-BS_1 AC 33.3 40 0.00086 20.3 1.9 24 12-35 15-38 (76)
241 PF11417 Inhibitor_G39P: Loade 33.2 1.1E+02 0.0023 18.2 4.4 24 126-154 45-68 (71)
242 PHA03075 glutaredoxin-like pro 33.1 42 0.00091 22.1 2.1 67 3-75 4-70 (123)
243 KOG0907|consensus 32.5 76 0.0016 20.4 3.3 57 6-62 27-88 (106)
244 cd02998 PDI_a_ERp38 PDIa famil 32.3 65 0.0014 19.8 3.0 54 3-56 21-81 (105)
245 TIGR02654 circ_KaiB circadian 32.1 48 0.001 20.6 2.2 53 4-56 6-63 (87)
246 PRK08118 topology modulation p 31.8 53 0.0011 23.0 2.7 31 1-31 1-31 (167)
247 cd03001 PDI_a_P5 PDIa family, 31.3 1.1E+02 0.0024 18.7 4.0 52 4-56 22-78 (103)
248 cd02999 PDI_a_ERp44_like PDIa 31.2 90 0.002 19.5 3.5 51 4-56 22-78 (100)
249 PRK09301 circadian clock prote 31.0 53 0.0011 21.1 2.3 53 4-56 9-66 (103)
250 COG5494 Predicted thioredoxin/ 30.6 91 0.002 23.0 3.6 60 3-62 12-71 (265)
251 cd03021 DsbA_GSTK DsbA family, 30.0 57 0.0012 23.7 2.7 35 2-36 1-39 (209)
252 PF01323 DSBA: DSBA-like thior 29.8 40 0.00086 23.8 1.9 36 3-38 1-41 (193)
253 PF09314 DUF1972: Domain of un 29.7 55 0.0012 23.6 2.5 20 57-76 154-173 (185)
254 COG3150 Predicted esterase [Ge 29.7 59 0.0013 23.2 2.5 33 4-36 3-35 (191)
255 PF04564 U-box: U-box domain; 29.3 98 0.0021 18.2 3.2 29 47-76 12-40 (73)
256 PF11348 DUF3150: Protein of u 29.3 1.9E+02 0.0041 22.1 5.4 71 127-200 55-131 (257)
257 cd02993 PDI_a_APS_reductase PD 28.4 1.5E+02 0.0032 18.7 4.2 54 3-56 24-84 (109)
258 PRK00625 shikimate kinase; Pro 27.5 60 0.0013 22.9 2.4 28 4-31 3-30 (173)
259 PF00392 GntR: Bacterial regul 27.2 1.2E+02 0.0026 17.1 3.3 31 128-159 4-35 (64)
260 PF11823 DUF3343: Protein of u 26.9 89 0.0019 18.3 2.7 32 5-36 4-35 (73)
261 PF10990 DUF2809: Protein of u 26.5 48 0.001 20.8 1.5 19 141-159 70-88 (91)
262 cd02985 TRX_CDSP32 TRX family, 26.2 1.7E+02 0.0037 18.2 5.0 58 4-61 19-84 (103)
263 PRK10877 protein disulfide iso 26.0 67 0.0014 24.0 2.5 21 4-24 111-131 (232)
264 PF06110 DUF953: Eukaryotic pr 25.7 77 0.0017 21.0 2.5 56 10-65 36-106 (119)
265 COG2761 FrnE Predicted dithiol 25.4 1.2E+02 0.0026 22.7 3.6 24 3-26 7-34 (225)
266 PRK15371 effector protein YopJ 25.2 1.3E+02 0.0028 23.4 3.9 45 121-167 23-67 (287)
267 PRK06217 hypothetical protein; 25.2 72 0.0016 22.5 2.5 29 1-29 1-29 (183)
268 cd02972 DsbA_family DsbA famil 25.1 73 0.0016 18.9 2.3 21 4-24 1-21 (98)
269 PF13098 Thioredoxin_2: Thiore 25.1 40 0.00086 21.3 1.1 21 3-23 8-28 (112)
270 PF10022 DUF2264: Uncharacteri 24.0 2.9E+02 0.0063 22.3 5.8 128 51-187 98-238 (361)
271 PRK03731 aroL shikimate kinase 23.1 92 0.002 21.5 2.7 30 2-31 3-32 (171)
272 PRK11657 dsbG disulfide isomer 22.6 97 0.0021 23.4 2.9 20 4-23 121-140 (251)
273 PF02173 pKID: pKID domain; I 22.1 1.4E+02 0.003 15.6 2.6 17 181-197 12-28 (41)
274 PRK14528 adenylate kinase; Pro 21.9 96 0.0021 22.0 2.6 29 1-29 1-29 (186)
275 cd06891 PX_Vps17p The phosphoi 21.4 63 0.0014 22.1 1.5 19 174-192 110-128 (140)
276 PF00004 AAA: ATPase family as 21.2 1.3E+02 0.0028 19.3 3.0 28 4-31 1-28 (132)
277 TIGR02739 TraF type-F conjugat 21.2 3.3E+02 0.0071 20.8 5.4 34 4-37 154-191 (256)
278 PF08433 KTI12: Chromatin asso 21.1 64 0.0014 24.7 1.6 32 1-32 1-35 (270)
279 PF11020 DUF2610: Domain of un 21.0 1.9E+02 0.0042 17.6 3.2 30 124-160 48-77 (82)
280 PRK09266 hypothetical protein; 20.6 1.5E+02 0.0033 22.4 3.6 55 21-75 200-258 (266)
281 cd03008 TryX_like_RdCVF Trypar 20.5 3E+02 0.0064 18.9 5.2 18 6-23 31-48 (146)
282 PF07862 Nif11: Nitrogen fixat 20.2 1.5E+02 0.0032 15.8 2.6 23 176-198 4-26 (49)
283 COG3011 Predicted thiol-disulf 20.0 3E+02 0.0065 18.8 6.3 73 3-75 9-87 (137)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=7.9e-39 Score=234.42 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=156.8
Q ss_pred CccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC---C
Q psy14324 2 PTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG---L 77 (203)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~---l 77 (203)
++++||+++.|++|++|+++|+++|++|+.+.++... .++++++||.|+||+|++||.+|+||.||++||+++++ +
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 3689999999999999999999999999999999864 46899999999999999999999999999999999985 8
Q ss_pred CCCChHHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHH
Q psy14324 78 NGKDAWEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFV 157 (203)
Q Consensus 78 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~ 157 (203)
+|.++.+++++..|+.++..........+..+... .. +...+.+.+.+..+|++|.++ +|++|+++|+||++++
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~l~~le~~L~~~-~~l~G~~~t~AD~~l~ 162 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSAS----EA-DAARKQLREELLAIAPVFGEK-PYFMSEEFSLVDCYLA 162 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HH-HHHHHHHHHHHHHHHHHhccC-CcccCCCccHHHHHHH
Confidence 89999999999999888764332222222222211 11 223367888999999999775 9999999999999999
Q ss_pred HHHHHHhhhhccccc-ccCchHHHHHHHHhcCchHHHHHHhC
Q psy14324 158 ACLDYMNVMAKQDLV-ENTPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 158 ~~l~~~~~~~~~~~~-~~~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
+.+.++...+ ..+. ..+|+|++|+++|.++|++++++...
T Consensus 163 ~~~~~~~~~~-~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~ 203 (211)
T PRK09481 163 PLLWRLPVLG-IELSGPGAKELKGYMTRVFERDSFLASLTEA 203 (211)
T ss_pred HHHHHHHhcC-CCCCCCCChhHHHHHHHHhccHHHHHHcCHH
Confidence 9998776543 3332 57999999999999999999988654
No 2
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=3.8e-37 Score=226.20 Aligned_cols=196 Identities=23% Similarity=0.270 Sum_probs=157.1
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 76 (203)
|. ++||+++.|++++||+++|+++||+|+.+.++.. ..++++.+||.|+||+|++||.+|+||.+|++||+++++
T Consensus 1 ~~-~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 1 MV-VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYA 79 (214)
T ss_pred Cc-eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcC
Confidence 53 8999999999999999999999999999998875 457888899999999999999999999999999999983
Q ss_pred -----CCCCChHHHHHHHHHHhHHHHHHHHhh-----hhccCC-ChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCccc
Q psy14324 77 -----LNGKDAWEDLQIDIAFETFNDFRAAVS-----SYHYDH-HEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLA 145 (203)
Q Consensus 77 -----l~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~ 145 (203)
++|.++.++++++.|+.+..+...... ...+.. .....+....+...+++.+.++.||++|+++ +|++
T Consensus 80 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~ 158 (214)
T PLN02473 80 DQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATN-RYLG 158 (214)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccC-Cccc
Confidence 889999999999999988876443211 111111 0111111122223477889999999999876 9999
Q ss_pred CCcchHHHHHHHHHHHHHhhhhc-ccccccCchHHHHHHHHhcCchHHHHHHhC
Q psy14324 146 NGKLSWADIYFVACLDYMNVMAK-QDLVENTPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 146 G~~~s~aD~~l~~~l~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
|+++|+||+++++.+.+...... ....+++|+|++|++++.++|+++++++..
T Consensus 159 Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~~ 212 (214)
T PLN02473 159 GDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMELA 212 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHHh
Confidence 99999999999999987654321 234688999999999999999999998753
No 3
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=216.79 Aligned_cols=193 Identities=27% Similarity=0.488 Sum_probs=151.0
Q ss_pred CC-ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhh------c--CCCCCCCCceEEECCeEeecHHHHHHHH
Q psy14324 1 MP-TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEI------K--PKMPFGKVPVLEVDGKQLHQSAAICRYL 71 (203)
Q Consensus 1 M~-~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~------~--~~~p~~~vP~l~~~g~~l~es~~I~~yL 71 (203)
|+ +++||+++.++++++||++|+++|++|+.+.++... +++ . ..||+|+||+|++||.+|+||.||++||
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 55 689999999999999999999999999999775322 222 2 4799999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcch
Q psy14324 72 AKQCGLNGKDAWEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLS 150 (203)
Q Consensus 72 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s 150 (203)
++++|+.+.+..++..++.+...+.++...+..... .. +...+...+.+.+.+..||++|.++ |+|++|+++|
T Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T 153 (205)
T PTZ00057 80 SKKYKICGESELNEFYADMIFCGVQDIHYKFNNTNL-----FK-QNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLT 153 (205)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCccc
Confidence 999998887766665555544433343322211110 00 1112334478899999999999865 4899999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCCCC
Q psy14324 151 WADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQS 201 (203)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~ 201 (203)
+||+++++.+.++.... ...++.+|+|++|++++.++|++++++++++.|
T Consensus 154 ~AD~~l~~~~~~~~~~~-~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~~~ 203 (205)
T PTZ00057 154 YADLAVFNLYDDIETKY-PNSLKNFPLLKAHNEFISNLPNIKNYISNRKES 203 (205)
T ss_pred HHHHHHHHHHHHHHHhC-hhhhccChhHHHHHHHHHhChHHHHHHHhCCCc
Confidence 99999999988876432 345689999999999999999999999999976
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-36 Score=221.78 Aligned_cols=194 Identities=17% Similarity=0.153 Sum_probs=150.9
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC----hhhhcCCCCCCCCceEEE-----CC--eEeecHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ----WPEIKPKMPFGKVPVLEV-----DG--KQLHQSAAICRYL 71 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~-----~g--~~l~es~~I~~yL 71 (203)
|++||+.+ +++|++|+++|+++||+|+.+.+++.+ .++++++||.|+||+|++ || .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999888 799999999999999999999998742 478999999999999997 45 4899999999999
Q ss_pred HHhcC-CCCCChHHHHHHHHHHhHHHHHHHHhhhh--ccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCc
Q psy14324 72 AKQCG-LNGKDAWEDLQIDIAFETFNDFRAAVSSY--HYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGK 148 (203)
Q Consensus 72 ~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~ 148 (203)
+++++ +.|.++.+++++.+|+.|........... .+.......++...+...+++.+.+..||++|.++ +|++|++
T Consensus 80 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~Gd~ 158 (215)
T PRK13972 80 AEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS-PWLGGEN 158 (215)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC-ccccCCC
Confidence 99997 56778999999999999886533322211 11110000111112223367889999999999876 9999999
Q ss_pred chHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCCC
Q psy14324 149 LSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQ 200 (203)
Q Consensus 149 ~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 200 (203)
+|+|||++++.+....... . ....+|+|++|+++|.++|++++++.+..-
T Consensus 159 ~t~ADi~l~~~~~~~~~~~-~-~~~~~P~l~~w~~r~~~rp~~~~~~~~~~~ 208 (215)
T PRK13972 159 YSIADIACWPWVNAWTRQR-I-DLAMYPAVKNWHERIRSRPATGQALLKAQL 208 (215)
T ss_pred CCHHHHHHHHHHHHHhhcC-C-cchhCHHHHHHHHHHHhCHHHHHHHHHhcc
Confidence 9999999988775443221 2 357899999999999999999999877543
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=8.2e-36 Score=218.90 Aligned_cols=190 Identities=16% Similarity=0.133 Sum_probs=152.6
Q ss_pred CccEEEecC--CCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 2 PTYKLIYFP--VKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 2 ~~~~Ly~~~--~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
|+++||+.+ .|++|++++++|.++||+|+.+.++.. ..++++++||.|+||+|++||.+|+||.+|++||++++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 479999976 799999999999999999999999975 24789999999999999999999999999999999999
Q ss_pred C------CCCCChHHHHHHHHHHhHHH-HHHHHhhhh----ccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcc
Q psy14324 76 G------LNGKDAWEDLQIDIAFETFN-DFRAAVSSY----HYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYL 144 (203)
Q Consensus 76 ~------l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl 144 (203)
+ ++|.++.+++++++|+.++. ++....... .+... ......+..++.+.+.++.+|++|+++++|+
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l 160 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGA---KKAPLSEAGKAAAEKLFAVAERLLAPGQPNL 160 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCC---CCCcccHHHHHHHHHHHHHHHHHHhcCCCEe
Confidence 5 89999999999999999986 343221110 11111 0111122233678899999999997644799
Q ss_pred cCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCC
Q psy14324 145 ANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRP 199 (203)
Q Consensus 145 ~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 199 (203)
+|+ +|+|||++++.+.++.... .. . .|+|.+|++|+.++|++++++++..
T Consensus 161 ~G~-~TlADi~l~~~l~~~~~~~-~~-~--~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 161 FGE-WCIADTDLALMLNRLVLHG-DE-V--PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred eCC-ccHHHHHHHHHHHHHHHcC-CC-C--CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 996 9999999999998776543 22 2 2999999999999999999998754
No 6
>KOG0406|consensus
Probab=100.00 E-value=1.4e-35 Score=212.73 Aligned_cols=189 Identities=19% Similarity=0.176 Sum_probs=158.6
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC-ChhhhcCCC-CCCCCceEEECCeEeecHHHHHHHHHHhcC----C
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE-QWPEIKPKM-PFGKVPVLEVDGKQLHQSAAICRYLAKQCG----L 77 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~-p~~~vP~l~~~g~~l~es~~I~~yL~~~~~----l 77 (203)
++||++..|||++|++++|.++||+|+.++.++. +++.++..| +.++||+|+++|..|.||..|++||++.++ +
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~i 89 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPI 89 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCC
Confidence 8999999999999999999999999999999996 778899999 899999999999999999999999999985 9
Q ss_pred CCCChHHHHHHHHHHhHHHHHHHHhhhhccC-CChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHH
Q psy14324 78 NGKDAWEDLQIDIAFETFNDFRAAVSSYHYD-HHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYF 156 (203)
Q Consensus 78 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l 156 (203)
+|+|+.+|++++.|.+++++........... ...+.++... +.+.+.|..||+.|...++|++|+++|++|+++
T Consensus 90 LP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~-----~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~ 164 (231)
T KOG0406|consen 90 LPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAK-----EELREALKVLEEELGKGKDFFGGETIGFVDIAI 164 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHH-----HHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhH
Confidence 9999999999999999999754443333332 2223332222 667799999999999434999999999999999
Q ss_pred HHHHHHHhhhhc------ccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 157 VACLDYMNVMAK------QDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 157 ~~~l~~~~~~~~------~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
++.+.++..... ....+.+|+|.+|.++|.+++.|++++..
T Consensus 165 ~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~ 211 (231)
T KOG0406|consen 165 GPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPD 211 (231)
T ss_pred HhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCC
Confidence 977776554431 23458999999999999999999987653
No 7
>KOG1695|consensus
Probab=100.00 E-value=7.3e-35 Score=207.82 Aligned_cols=203 Identities=41% Similarity=0.733 Sum_probs=176.0
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcCCCC
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCGLNG 79 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~l~p 79 (203)
|+.++|++++..+++..+|+++++.|++|+.+.+...+ |++.+...|+|++|+|..||..|.+|.||++||++++|+.+
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl~G 80 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGLAG 80 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCcCC
Confidence 88999999999999999999999999999999999987 88888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhHHHHHHHHhhhhccCCC-hHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcchHHHHHHH
Q psy14324 80 KDAWEDLQIDIAFETFNDFRAAVSSYHYDHH-EESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLSWADIYFV 157 (203)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s~aD~~l~ 157 (203)
+++.+.+.++.+.+.+.++...+....+... ........++.......+.+..+++.|..+ ..||+||++|+||+.++
T Consensus 81 kt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~ 160 (206)
T KOG1695|consen 81 KTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIA 160 (206)
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHH
Confidence 9999999999999999998887555444321 111111111133367788999999999865 37999999999999999
Q ss_pred HHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCCCCCC
Q psy14324 158 ACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQSEV 203 (203)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~ 203 (203)
..+..+...........+|+|+++.+++.++|.++++++.++.|++
T Consensus 161 e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~t~~ 206 (206)
T KOG1695|consen 161 EHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPVTKV 206 (206)
T ss_pred HHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCCCCC
Confidence 9999888854466778899999999999999999999999999875
No 8
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=3e-35 Score=216.25 Aligned_cols=196 Identities=21% Similarity=0.204 Sum_probs=154.4
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 76 (203)
|+ ++||+.+. ++++|++++|.++|++|+.+.++.. ..++++++||.|+||+|+++|.+|+||.+|++||+++++
T Consensus 1 ~~-~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 1 MV-LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred Ce-EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcC
Confidence 75 89999765 5699999999999999999998873 357899999999999999999999999999999999973
Q ss_pred -----CCCCChHHHHHHHHHHhHHHHHH-----HHhhhhccCC--ChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcc
Q psy14324 77 -----LNGKDAWEDLQIDIAFETFNDFR-----AAVSSYHYDH--HEESKKLKWEPLSKETIPYYQANFEELAKNNGGYL 144 (203)
Q Consensus 77 -----l~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl 144 (203)
++|.++.++++++.|+.+.+... .......+.. .......... ..++++.+.++.||++|+++ +|+
T Consensus 79 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~~-~~l 156 (215)
T PLN02395 79 SQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIK-ESEEKLAKVLDVYEARLSKS-KYL 156 (215)
T ss_pred CCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHH-HHHHHHHHHHHHHHHHhcCC-ccc
Confidence 89999999999999999876421 1111111110 0000111122 23477889999999999876 999
Q ss_pred cCCcchHHHHHHHHHHHHHhhhh-cccccccCchHHHHHHHHhcCchHHHHHHhCCC
Q psy14324 145 ANGKLSWADIYFVACLDYMNVMA-KQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQ 200 (203)
Q Consensus 145 ~G~~~s~aD~~l~~~l~~~~~~~-~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 200 (203)
+|+++|+||+++++++.++.... .......+|+|++|++++.++|+++++++..+.
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~~~ 213 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKYSL 213 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHhcC
Confidence 99999999999999887764322 123467899999999999999999999988764
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=5.9e-35 Score=213.96 Aligned_cols=192 Identities=20% Similarity=0.237 Sum_probs=153.6
Q ss_pred EEEecCCCCCchHHHHHHHhCCCcceeeccCCC-----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC---
Q psy14324 5 KLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE-----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG--- 76 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~--- 76 (203)
+||+++.|++++++|++|+++||+|+.+.++.. ..+++.++||+|+||+|++||.+|+||.+|++||+++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999998862 246789999999999999999999999999999999984
Q ss_pred CCCCChHHHHHHHHHHhHHHH-HHH----HhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcch
Q psy14324 77 LNGKDAWEDLQIDIAFETFND-FRA----AVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLS 150 (203)
Q Consensus 77 l~p~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s 150 (203)
+.|.+..+++++++|+.++.. +.. .....+..... ..+....+...+.+.+.|+.||++|.++ |+|++|+++|
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLG-VEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 999999999999999988753 221 11111111100 0111223333466889999999999864 5799999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCC
Q psy14324 151 WADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRP 199 (203)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 199 (203)
+|||++++.+.+..... . ..+.+|+|++|+++|.++|+++++.+.-+
T Consensus 160 ~ADi~~~~~l~~~~~~~-~-~~~~~p~l~~~~~~~~~rp~~~~~~~~~~ 206 (210)
T TIGR01262 160 LADLCLVPQVYNAERFG-V-DLTPYPTLRRIAAALAALPAFQRAHPENQ 206 (210)
T ss_pred HHHHHHHHHHHHHHHcC-C-CcccchHHHHHHHHHhcCHHHHHhCcccC
Confidence 99999999998875432 2 35789999999999999999999987653
No 10
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=1.4e-34 Score=210.57 Aligned_cols=187 Identities=16% Similarity=0.224 Sum_probs=151.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC-----ChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHHHhcC-
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE-----QWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLAKQCG- 76 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-----~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~~~~~- 76 (203)
|+||+.+.| ++++++++|+++||+|+.+.+++. +.+++.++||.|+||+|++ ||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589999865 799999999999999999999874 2367999999999999986 88999999999999999996
Q ss_pred --CC-CCChHHHHHHHHHHhHHHH-HHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHH
Q psy14324 77 --LN-GKDAWEDLQIDIAFETFND-FRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWA 152 (203)
Q Consensus 77 --l~-p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~a 152 (203)
++ |.++.+++++..|+.+..+ +...+...+..... +...+...+.+.+.++.||+.|+++ +|++|+++|+|
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~s~A 154 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTP----EEYKPTVRAQLEKKFQYVDEALADE-QWICGQRFTIA 154 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCCh----HHHHHHHHHHHHHHHHHHHHHhcCC-CeeeCCCCcHH
Confidence 44 6678899999999988764 33333332222211 1122233477889999999999876 99999999999
Q ss_pred HHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhC
Q psy14324 153 DIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 153 D~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
|+++++.+.+..... .. ...+|+|.+|++++.++|++++++++.
T Consensus 155 Di~l~~~~~~~~~~~-~~-~~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 155 DAYLFTVLRWAYAVK-LN-LEGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred hHHHHHHHHHhhccC-CC-cccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 999999998876543 32 578999999999999999999999864
No 11
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.9e-34 Score=215.58 Aligned_cols=195 Identities=13% Similarity=0.095 Sum_probs=152.8
Q ss_pred ccEEEecCCCCCchHHHHHHHhC------CCcceeeccCCCC----hhhhcCCCCCCCCceEEEC----CeEeecHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYM------EQDFEDYRFEREQ----WPEIKPKMPFGKVPVLEVD----GKQLHQSAAIC 68 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~------gi~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~~----g~~l~es~~I~ 68 (203)
.++||+.+ |++|+||+++|+++ |++|+.+.+++.+ .++++++||.|+||+|+++ |.+|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 48999976 99999999999997 8999999988742 5789999999999999994 36999999999
Q ss_pred HHHHHhcC-CCCCChHHHHHHHHHHhHHHHHHHHh---hhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcc
Q psy14324 69 RYLAKQCG-LNGKDAWEDLQIDIAFETFNDFRAAV---SSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYL 144 (203)
Q Consensus 69 ~yL~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl 144 (203)
+||+++++ ++|.++.+++++++|+.+........ ...++...+........+ ..+++.+.|+.||++|.++ +||
T Consensus 123 ~YL~~~~~~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~le~~L~~~-~fl 200 (264)
T PRK11752 123 LYLAEKFGAFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINR-FTMEAKRQLDVLDKQLAEH-EYI 200 (264)
T ss_pred HHHHHhcCCcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHH-HHHHHHHHHHHHHHHhccC-CCC
Confidence 99999997 99999999999999999876432211 111111111111112222 3367889999999999876 999
Q ss_pred cCCcchHHHHHHHHHHHHHhhh---h--cccccccCchHHHHHHHHhcCchHHHHHHhCCC
Q psy14324 145 ANGKLSWADIYFVACLDYMNVM---A--KQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQ 200 (203)
Q Consensus 145 ~G~~~s~aD~~l~~~l~~~~~~---~--~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 200 (203)
+|+++|+|||++++.+.++... . +......+|+|++|+++|.++|+++++++.+..
T Consensus 201 ~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~~ 261 (264)
T PRK11752 201 AGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNRT 261 (264)
T ss_pred CCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcccc
Confidence 9999999999999988766432 1 011357899999999999999999999988753
No 12
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=2.8e-33 Score=203.88 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=149.3
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC-ChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHHHhcC---CC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE-QWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLAKQCG---LN 78 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~~~~~---l~ 78 (203)
++||+++.||++++||++|+++||+|+.+.++.. ..+++.+.||.|+||+|++ +|.+++||.+|++||+++++ ++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999999999999888864 4456778899999999985 78999999999999999984 89
Q ss_pred CCChHHHHHHHHHHhHHHHHHHHhhhhcc---CCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHH
Q psy14324 79 GKDAWEDLQIDIAFETFNDFRAAVSSYHY---DHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIY 155 (203)
Q Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~ 155 (203)
|.++.+++++++|..+..+.......... ........+.. +..++.+.+.|+.||++|.++ + ++|+++|+||++
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~le~~L~~~-~-l~Gd~~t~ADi~ 157 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDEL-LRQREKINRSLDALEGYLVDG-T-LKTDTVNLATIA 157 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHH-HHHHHHHHHHHHHHHHhhccC-c-ccCCCcCHHHHH
Confidence 99999999999998876654433221111 11111111112 223378899999999999875 7 999999999999
Q ss_pred HHHHHHHHhhhh-cccccccCchHHHHHHHHhcCchHHHHH
Q psy14324 156 FVACLDYMNVMA-KQDLVENTPTLKKLRDEVLAIPTIKKWV 195 (203)
Q Consensus 156 l~~~l~~~~~~~-~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 195 (203)
+++.+.++.... +......+|+|++|++++.++|+++++.
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~ 198 (202)
T PRK10357 158 IACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTE 198 (202)
T ss_pred HHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcC
Confidence 999998775532 1223468999999999999999999864
No 13
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-33 Score=202.82 Aligned_cols=186 Identities=23% Similarity=0.263 Sum_probs=150.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC---ChhhhcCCCCCCCCceEEECCe-EeecHHHHHHHHHHhcC---
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE---QWPEIKPKMPFGKVPVLEVDGK-QLHQSAAICRYLAKQCG--- 76 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~p~~~vP~l~~~g~-~l~es~~I~~yL~~~~~--- 76 (203)
++||+.+.||+|++|+++|.++|++|+.+.++.. ..++++.+||.|+||+|+++|. +|+||.+|++||+++++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 5899999999999999999999999999999986 4678999999999999999654 99999999999999997
Q ss_pred CCCCChH---HHHHHHHHHhHHHH-HHHHhhhhccCC--ChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcch
Q psy14324 77 LNGKDAW---EDLQIDIAFETFND-FRAAVSSYHYDH--HEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLS 150 (203)
Q Consensus 77 l~p~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s 150 (203)
++|.++. .+++...|..+... +...+....... ..........+...+.+...++.+|+.|+++ +|++|+++|
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~t 159 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADG-PYLAGDRFT 159 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccC-CcccCCCCC
Confidence 9998885 77888888888753 333322222111 1111022333344478899999999999985 999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHH
Q psy14324 151 WADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIK 192 (203)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 192 (203)
+||+++++.+.++.... ... ..+|++.+|++|+.++|+.+
T Consensus 160 iAD~~~~~~~~~~~~~~-~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLALLG-EEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhhhcC-ccc-ccChHHHHHHHHHHcCCchh
Confidence 99999999999866654 222 88999999999999999954
No 14
>KOG0868|consensus
Probab=100.00 E-value=1.1e-33 Score=191.36 Aligned_cols=193 Identities=19% Similarity=0.205 Sum_probs=160.0
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-----hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC-
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-----WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG- 76 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-----~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~- 76 (203)
+++||.+..|..++|||++|..+||+|+.+.+++-+ ..+|.++||.++||+|++||.+++||.||+.||+++++
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ 84 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPD 84 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCC
Confidence 789999999999999999999999999999999842 35799999999999999999999999999999999995
Q ss_pred --CCCCChHHHHHHHHHHhHHHHHHHHhhhh----ccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcc
Q psy14324 77 --LNGKDAWEDLQIDIAFETFNDFRAAVSSY----HYDHHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKL 149 (203)
Q Consensus 77 --l~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~ 149 (203)
++|+++..|+.++.+...+.+....+... +......... ....+.-+.+.+..||+.|... |.|-+||++
T Consensus 85 ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~---~~W~q~~ItkGF~ALEklL~~~aGkycvGDev 161 (217)
T KOG0868|consen 85 PPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYG---DQWAQHFITKGFTALEKLLKSHAGKYCVGDEV 161 (217)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchh---hHHHHHHHHHhHHHHHHHHHHccCCcccCcee
Confidence 99999999999999988876644332211 1111111111 2233466789999999999886 899999999
Q ss_pred hHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCCC
Q psy14324 150 SWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQ 200 (203)
Q Consensus 150 s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 200 (203)
|+||+++.+.+..... + .-.+..||.+.+..+.+...|.++....++++
T Consensus 162 tiADl~L~pqv~nA~r-f-~vdl~PYPti~ri~e~l~elpaFq~ahP~nQP 210 (217)
T KOG0868|consen 162 TIADLCLPPQVYNANR-F-HVDLTPYPTITRINEELAELPAFQAAHPDNQP 210 (217)
T ss_pred ehhhhccchhhhhhhh-c-cccCCcCchHHHHHHHHHhCHHHHhcCCCCCC
Confidence 9999999999998833 3 34689999999999999999999988776654
No 15
>KOG0867|consensus
Probab=99.98 E-value=2.7e-31 Score=195.47 Aligned_cols=191 Identities=24% Similarity=0.218 Sum_probs=157.9
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC---
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG--- 76 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~--- 76 (203)
++||+++.|+.++++.+++.++|++|+.+.++.. ..++|+++||.++||+|+++|..++||.||+.||.++|+
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~ 82 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLG 82 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCC
Confidence 8999999999999999999999999999988874 468999999999999999999999999999999999885
Q ss_pred --CCCCChHHHHHHHHHHhHHHHHHHHh--hhhccCC-C-hHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcch
Q psy14324 77 --LNGKDAWEDLQIDIAFETFNDFRAAV--SSYHYDH-H-EESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLS 150 (203)
Q Consensus 77 --l~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s 150 (203)
++|.+..+++.+++|+.+.++..... ....... . .........+....++.+.++.+|..|.++ .|+.|+++|
T Consensus 83 ~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~-~yl~g~~~t 161 (226)
T KOG0867|consen 83 GILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ-VYLAGDQLT 161 (226)
T ss_pred cccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC-CcccCCccc
Confidence 89999999999999998877644433 1211111 0 000011122223388899999999999997 999999999
Q ss_pred HHHHHHHHHHHHHh--hhhcccccccCchHHHHHHHHhcCchHHHHHH
Q psy14324 151 WADIYFVACLDYMN--VMAKQDLVENTPTLKKLRDEVLAIPTIKKWVE 196 (203)
Q Consensus 151 ~aD~~l~~~l~~~~--~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 196 (203)
+||+.+.+.+..+. .. ......++|++.+|++++.++|++++...
T Consensus 162 lADl~~~~~~~~~~~~~~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~ 208 (226)
T KOG0867|consen 162 LADLSLASTLSQFQGKFA-TEKDFEKYPKVARWYERIQKRPAYEEANE 208 (226)
T ss_pred HHHHHHhhHHHHHhHhhh-hhhhhhhChHHHHHHHHHHhCccHHHHHH
Confidence 99999999999884 33 25577899999999999999999988654
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=99.98 E-value=2.3e-31 Score=195.08 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=134.1
Q ss_pred ecCCCCCchHHHHHHHhCCCcceeeccCCC-ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcCCC-CCChHHH
Q psy14324 8 YFPVKALAEPIRFLLSYMEQDFEDYRFERE-QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCGLN-GKDAWED 85 (203)
Q Consensus 8 ~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~l~-p~~~~~~ 85 (203)
++..||+|+||+++|+++|++|+.+.+++. +.++|+++||.|+||+|++||.+|+||.+|++||+++++-. ..++.++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~~~~~~ 95 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEF 95 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCCCHHHH
Confidence 345699999999999999999999999986 44579999999999999999999999999999999998621 1355666
Q ss_pred HHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhh-cCCcccCCcchHHHHHHHHHHHHHh
Q psy14324 86 LQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKN-NGGYLANGKLSWADIYFVACLDYMN 164 (203)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~-~g~fl~G~~~s~aD~~l~~~l~~~~ 164 (203)
+.+...+. ..+.......... + ...+.+.+.|..||++|.. +|+|++|+++|+||+++++.+.++.
T Consensus 96 a~i~~~~~------~~~~~~~~~~~~~--~-----~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~ 162 (213)
T PLN02378 96 ASVGSNIF------GTFGTFLKSKDSN--D-----GSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQ 162 (213)
T ss_pred HHHHHHHH------HHHHHHHhcCChh--h-----HHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHH
Confidence 65544321 1111111111111 1 1114667889999999984 2599999999999999999988765
Q ss_pred hhhc----ccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 165 VMAK----QDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 165 ~~~~----~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
...+ ......+|+|++|+++|.++|++++++.+
T Consensus 163 ~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~ 199 (213)
T PLN02378 163 VALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTE 199 (213)
T ss_pred HHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCC
Confidence 4321 22357899999999999999999977654
No 17
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.97 E-value=6.1e-31 Score=193.32 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=136.0
Q ss_pred cCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC--CCC----CC
Q psy14324 9 FPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG--LNG----KD 81 (203)
Q Consensus 9 ~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~--l~p----~~ 81 (203)
.+.||+|++|+++|.++||+|+.+.+++.. .++|+++||.|+||+|+++|.+|+||.+|++||+++++ ++| .+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 367899999999999999999999999864 57899999999999999999999999999999999984 333 34
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhh-----------------cCCcc
Q psy14324 82 AWEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKN-----------------NGGYL 144 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~-----------------~g~fl 144 (203)
+..++... +++..+..++........ +...+.+.+.+..||+.|.+ +++|+
T Consensus 96 ~~~~~~~~-------~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~ 163 (236)
T TIGR00862 96 PESNTAGL-------DIFAKFSAYIKNSNPEAN-----DNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFL 163 (236)
T ss_pred HHHHHHHH-------HHHHHHHHHHHcCCHHHH-----HHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcc
Confidence 44433221 122222221211211111 12235688999999999973 24999
Q ss_pred cCCcchHHHHHHHHHHHHHhhhh----cccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 145 ANGKLSWADIYFVACLDYMNVMA----KQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 145 ~G~~~s~aD~~l~~~l~~~~~~~----~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
.|+++|+|||++++.+.++.... +.++.+++|+|.+|++++.++|++++.+..
T Consensus 164 ~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~ 220 (236)
T TIGR00862 164 DGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPD 220 (236)
T ss_pred cCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCC
Confidence 99999999999999999888642 355679999999999999999999987543
No 18
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=1.9e-30 Score=194.63 Aligned_cols=175 Identities=14% Similarity=0.151 Sum_probs=135.2
Q ss_pred cCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcCC-CCCChHHHH
Q psy14324 9 FPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCGL-NGKDAWEDL 86 (203)
Q Consensus 9 ~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~l-~p~~~~~~~ 86 (203)
...||+|++++++|+++||+|+.+.+++.. .++++++||.|+||+|+++|.+|+||.+|++||+++++- ...++.+++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~~~~era 149 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPPEKA 149 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 345999999999999999999999999864 567999999999999999989999999999999999962 113567777
Q ss_pred HHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhh
Q psy14324 87 QIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVM 166 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~ 166 (203)
++..++.. .+...+....... . ..+.+.+.+..||++|+++|+|++|+++|+|||++++.+.++...
T Consensus 150 ~i~~~l~~------~~~~~~~~~~~~~--~-----~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~ 216 (265)
T PLN02817 150 SVGSKIFS------TFIGFLKSKDPGD--G-----TEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIA 216 (265)
T ss_pred HHHHHHHH------HHHHHhccCCcch--H-----HHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 76654321 1111122111111 0 114566789999999986569999999999999999999877653
Q ss_pred hc----ccccccCchHHHHHHHHhcCchHHHHHH
Q psy14324 167 AK----QDLVENTPTLKKLRDEVLAIPTIKKWVE 196 (203)
Q Consensus 167 ~~----~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 196 (203)
.+ ..+.+.+|+|++|++++.++|++++...
T Consensus 217 ~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~ 250 (265)
T PLN02817 217 LGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRA 250 (265)
T ss_pred HHHhcCCCccccCHHHHHHHHHHhcchhHhhcCC
Confidence 21 2345789999999999999999998754
No 19
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=1.1e-30 Score=191.35 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=135.6
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEE-ECCeEeecHHHHHHHHHHhcC--CCCC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLE-VDGKQLHQSAAICRYLAKQCG--LNGK 80 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~l~es~~I~~yL~~~~~--l~p~ 80 (203)
++||+++.||+|+++|++|+++||+|+.+.++..+.....+.||.++||+|+ +||.+++||.+|++||+++|+ +++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~- 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT- 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-
Confidence 6899999999999999999999999999988765433335689999999995 689999999999999999996 333
Q ss_pred ChHHHHHHHHHHhHHHHHHH-HhhhhccCC------ChHhHHh----------------hhhhhhhcchhhhHHHHHHHH
Q psy14324 81 DAWEDLQIDIAFETFNDFRA-AVSSYHYDH------HEESKKL----------------KWEPLSKETIPYYQANFEELA 137 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~----------------~~~~~~~~~l~~~l~~le~~l 137 (203)
...++.+..|+.+...... .+...+... ....... ...+...+++.+.|+.+|++|
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 158 (210)
T PRK10387 80 -GKRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLI 158 (210)
T ss_pred -CcccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 2356778888877754332 222211110 0000000 000122367889999999999
Q ss_pred hhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchH
Q psy14324 138 KNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTI 191 (203)
Q Consensus 138 ~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 191 (203)
+ + +|++|+++|+||+++++++.++....+ .+.+|+|.+|++||.++|++
T Consensus 159 ~-~-~~l~G~~~s~ADi~l~~~l~~~~~~~~---~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 159 V-K-PNAVNGELSTDDIHLFPILRNLTLVKG---IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred c-C-ccccCCCCCHHHHHHHHHHhcceeecC---CCCCHHHHHHHHHHHHHhCC
Confidence 5 4 999999999999999999998876532 23469999999999999875
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=7.2e-29 Score=181.26 Aligned_cols=178 Identities=16% Similarity=0.176 Sum_probs=132.0
Q ss_pred EEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEE-ECCeEeecHHHHHHHHHHhcC--CCCCC
Q psy14324 5 KLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLE-VDGKQLHQSAAICRYLAKQCG--LNGKD 81 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~l~es~~I~~yL~~~~~--l~p~~ 81 (203)
+||++..||+|+|||++|.++|++|+.+.++..+.....+.||.|+||+|+ +||.+++||.+|++||+++|+ +++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~-- 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT-- 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC--
Confidence 689999999999999999999999999887665444457889999999998 689999999999999999986 332
Q ss_pred hHHHHHHHHHHhHHHHHHHH-hhhhccCCC-h-----H-------hHHhh----------hhhhhhcchhhhHHHHHHHH
Q psy14324 82 AWEDLQIDIAFETFNDFRAA-VSSYHYDHH-E-----E-------SKKLK----------WEPLSKETIPYYQANFEELA 137 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-----~-------~~~~~----------~~~~~~~~l~~~l~~le~~l 137 (203)
+..+.++..|+.++...... +...+.... . . ..... ..+ ..+.+++.|+.+|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~le~~L 157 (209)
T TIGR02182 79 GKVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPG-LLEEINADLEELDKLI 157 (209)
T ss_pred CCChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHH-HHHHHHHHHHHHHHHH
Confidence 22456677788776654432 222221100 0 0 00000 012 2367889999999999
Q ss_pred hhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCc-hHHHHHHHHhcCchH
Q psy14324 138 KNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTP-TLKKLRDEVLAIPTI 191 (203)
Q Consensus 138 ~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p-~l~~w~~~~~~~~~~ 191 (203)
+++ +|++| ++|+||+++++.+.++....+. .+| +|.+|++||++++.+
T Consensus 158 ~~~-~~l~g-~~TiADi~l~~~l~~~~~~~~~----~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 158 DGP-NAVNG-ELSEDDILVFPLLRNLTLVAGI----NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred hCc-cccCC-CCCHHHHHHHHHhcCeeeecCC----CCChHHHHHHHHHHHHhCC
Confidence 886 99855 6999999999999887764311 256 999999999998764
No 21
>KOG4420|consensus
Probab=99.94 E-value=1.1e-25 Score=161.30 Aligned_cols=195 Identities=15% Similarity=0.188 Sum_probs=139.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhc-C-
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC-G- 76 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~-~- 76 (203)
.++||++|.|..+|+||+++.++||+|+...|++. ..|.|.+.||.|.||++++|..+|.|+..|++|++++| |
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 38999999999999999999999999999999985 35889999999999999999999999999999999988 3
Q ss_pred --CCCC-ChHHHHHHHHHHhHHHH-----HHH---------------Hhh---hh-----------ccCCChHhHH----
Q psy14324 77 --LNGK-DAWEDLQIDIAFETFND-----FRA---------------AVS---SY-----------HYDHHEESKK---- 115 (203)
Q Consensus 77 --l~p~-~~~~~~~~~~~~~~~~~-----~~~---------------~~~---~~-----------~~~~~~~~~~---- 115 (203)
+.|. +..+..++..+...... +.. .+. .. .....++..+
T Consensus 106 r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~a 185 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLA 185 (325)
T ss_pred ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 5663 22222222222111110 000 000 00 0000000000
Q ss_pred ---------------hhhhhhhhcchhhhHHHHHHHHhhc---CCcccCCcchHHHHHHHHHHHHHhhhhcc-ccc--cc
Q psy14324 116 ---------------LKWEPLSKETIPYYQANFEELAKNN---GGYLANGKLSWADIYFVACLDYMNVMAKQ-DLV--EN 174 (203)
Q Consensus 116 ---------------~~~~~~~~~~l~~~l~~le~~l~~~---g~fl~G~~~s~aD~~l~~~l~~~~~~~~~-~~~--~~ 174 (203)
....+. .+.+...|+..|+.|..+ -.||+|+.+|+||+.+.+.++++..++-. ... ..
T Consensus 186 kqkkl~~kl~~hdd~s~lkki-ld~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gs 264 (325)
T KOG4420|consen 186 KQKKLMAKLLEHDDVSYLKKI-LDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGS 264 (325)
T ss_pred HHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCC
Confidence 011111 155667777888888763 28999999999999999999999988621 223 47
Q ss_pred CchHHHHHHHHhcCchHHHHHHhC
Q psy14324 175 TPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 175 ~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
.|+|..|++|++.|+++++++.+-
T Consensus 265 rpnle~Yf~rvrrR~sf~kvlg~~ 288 (325)
T KOG4420|consen 265 RPNLESYFERVRRRFSFRKVLGDI 288 (325)
T ss_pred CccHHHHHHHHHhhhHHHHhhhhH
Confidence 999999999999999999998653
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.92 E-value=6.3e-24 Score=177.33 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=132.0
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHHHhcC---
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLAKQCG--- 76 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~~~~~--- 76 (203)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|.|+||+|++ +|..++||.||++||++.++
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~-----------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~ 67 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP-----------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPG 67 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEee-----------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcC
Confidence 77 8999999764 7789999999999999975 268999999997 88999999999999999974
Q ss_pred CCCCChHHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHH
Q psy14324 77 LNGKDAWEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYF 156 (203)
Q Consensus 77 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l 156 (203)
++|.++.+++++++|+.+...... . ..+...++.||++|..+ +||+|+++|+||+++
T Consensus 68 L~p~d~~erAqV~qWL~~~~~~~~----------~------------~~l~~~L~~LE~~L~~r-tYLvGd~lTLADIaL 124 (722)
T PLN02907 68 FYGQDAFESSQVDEWLDYAPTFSS----------G------------SEFENACEYVDGYLASR-TFLVGYSLTIADIAI 124 (722)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccc----------H------------HHHHHHHHHHHHHhccC-CeecCCCCCHHHHHH
Confidence 889999999999999998754210 0 12446789999999886 999999999999999
Q ss_pred HHHHHHHh-hhhcccccccCchHHHHHHHHhcCch------HHHHHHh
Q psy14324 157 VACLDYMN-VMAKQDLVENTPTLKKLRDEVLAIPT------IKKWVEK 197 (203)
Q Consensus 157 ~~~l~~~~-~~~~~~~~~~~p~l~~w~~~~~~~~~------~~~~~~~ 197 (203)
++.+.... ..........+|+|.+|+++|.++|+ ++++.+.
T Consensus 125 ~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs~~~~~~~~a~~~~ 172 (722)
T PLN02907 125 WSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILNEVTAAYVGK 172 (722)
T ss_pred HHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 99886542 11112235789999999999999999 5666553
No 23
>KOG1422|consensus
Probab=99.85 E-value=2e-20 Score=130.69 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=134.7
Q ss_pred CCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC--CCCC-ChHHHH
Q psy14324 11 VKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG--LNGK-DAWEDL 86 (203)
Q Consensus 11 ~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~--l~p~-~~~~~~ 86 (203)
.||+||++.+.|.++|++|..+.||+.. .++++++.|.+++|+|..|+.+++||..|-++|+++++ -+|. ++.+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E-- 97 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE-- 97 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH--
Confidence 5899999999999999999999999985 45688999999999999999999999999999999995 3333 1222
Q ss_pred HHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhh-c-CCcccCCcchHHHHHHHHHHHHHh
Q psy14324 87 QIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKN-N-GGYLANGKLSWADIYFVACLDYMN 164 (203)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~-~-g~fl~G~~~s~aD~~l~~~l~~~~ 164 (203)
......+++..+..++....+... +..++.+.+.|..|+++|+. + |+|+.||++|.|||.+.+=|..++
T Consensus 98 ----~asag~diF~kF~~fi~ksk~~~n-----~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~ 168 (221)
T KOG1422|consen 98 ----SASAGSDIFAKFSAFIKKSKDAAN-----DGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIK 168 (221)
T ss_pred ----HHhhHHHHHHHHHHHHhCchhhcc-----chHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHH
Confidence 122234455555554443322111 11225677888999999986 4 799999999999999999999888
Q ss_pred hhh----cccccccCchHHHHHHHHhcCchHHH
Q psy14324 165 VMA----KQDLVENTPTLKKLRDEVLAIPTIKK 193 (203)
Q Consensus 165 ~~~----~~~~~~~~p~l~~w~~~~~~~~~~~~ 193 (203)
... +....+..+.+.+|++.+-++.++..
T Consensus 169 va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~ 201 (221)
T KOG1422|consen 169 VAAKHYKNFEIPASLTGVWRYLKNAYARDEFTN 201 (221)
T ss_pred HHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhc
Confidence 765 35677899999999999999887654
No 24
>KOG3029|consensus
Probab=99.82 E-value=7.2e-20 Score=133.03 Aligned_cols=182 Identities=17% Similarity=0.136 Sum_probs=128.7
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhc-------
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC------- 75 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~------- 75 (203)
+++||.+..||||-+||.+|.++||+|+.++|++-...+.+ -+.+.+||+|...|+.+.||.+|+.-|+.-.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~l 168 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQDL 168 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhcc-ccccccccEEEeccceechhHHHHHHHHHHhccCCCCH
Confidence 58999999999999999999999999999999986544433 3478899999998878999999998774422
Q ss_pred ----CCCCC-----------------------------ChHHHHHHHHHHhHHHHHHH-HhhhhccCCChH---------
Q psy14324 76 ----GLNGK-----------------------------DAWEDLQIDIAFETFNDFRA-AVSSYHYDHHEE--------- 112 (203)
Q Consensus 76 ----~l~p~-----------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------- 112 (203)
..+|. +...+.....|..|+++... -+.+..+....+
T Consensus 169 ~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~ 248 (370)
T KOG3029|consen 169 GEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFS 248 (370)
T ss_pred HHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHH
Confidence 03331 11223344556666654321 111111100000
Q ss_pred ---------------------------------hHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHH
Q psy14324 113 ---------------------------------SKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 113 ---------------------------------~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~ 159 (203)
.+.... + .++.+....+.+-..++.+.+|+.|++|++||+++++.
T Consensus 249 q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~-D-~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 249 QAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNIS-D-EREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccc-h-HHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 000011 1 23667788888888887667999999999999999999
Q ss_pred HHHHhhhhcccccccCchHHHHHHHHhc
Q psy14324 160 LDYMNVMAKQDLVENTPTLKKLRDEVLA 187 (203)
Q Consensus 160 l~~~~~~~~~~~~~~~p~l~~w~~~~~~ 187 (203)
+.-+.....+...-...++..|+-+|++
T Consensus 327 l~sm~gc~afkd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 327 LRSMEGCQAFKDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhHhhhhhHHHHHHhcchHHHHHHHHHH
Confidence 9988887655556677899999999987
No 25
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=3.9e-20 Score=113.85 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=66.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEE--CCeEeecHHHHHHHHHHhc
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEV--DGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~--~g~~l~es~~I~~yL~~~~ 75 (203)
|++||+++.||+|++++++|.++||+|+.+.++... .+++.+.||.++||+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 489999999999999999999999999999887543 567889999999999998 4689999999999999875
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.82 E-value=3.3e-20 Score=112.72 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=63.9
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
++||+++.|++|+++|++|+++|++|+.+.++.. ..+++.++||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998873 34679999999999999999999999999999984
No 27
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.81 E-value=1.1e-19 Score=110.79 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=66.9
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
++||+.+.||+|++++++|+++|++|+.+.++... .+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 68999999999999999999999999999988763 4688999999999999999999999999999999875
No 28
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.81 E-value=2.4e-20 Score=114.19 Aligned_cols=71 Identities=35% Similarity=0.461 Sum_probs=67.2
Q ss_pred EEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC
Q psy14324 6 LIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 6 Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 76 (203)
||+++.||+|+|+|++|+++||+|+.+.++..+ .+++...||.++||+|++||.+++||.+|++||+++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999865 57788899999999999999999999999999999985
No 29
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.80 E-value=2.1e-19 Score=109.83 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=64.9
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
++||+++.|++|++++++|+++|++|+.+.++.. ..+++.+.||.|++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 6899999999999999999999999999999864 247899999999999999999999999999999974
No 30
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=2.5e-19 Score=109.46 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=65.8
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC-ChhhhcCCCCC-CCCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE-QWPEIKPKMPF-GKVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~p~-~~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
++||+++.||+|+++|++|+++|++|+.+.++.. +.+++.+.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988875 34678889995 999999999999999999999999864
No 31
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.79 E-value=4.1e-19 Score=108.14 Aligned_cols=71 Identities=41% Similarity=0.634 Sum_probs=65.1
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHh
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~ 74 (203)
++||+++.|++|+++|++|.++|++|+.+.++... .+++...||.|++|+|++||.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 79999999999999999999999999999998753 346888999999999999999999999999999863
No 32
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.79 E-value=6.4e-19 Score=109.60 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=66.3
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEEC---CeEeecHHHHHHHHHHhc
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVD---GKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~---g~~l~es~~I~~yL~~~~ 75 (203)
|++||+++. |+|++++++|+++|++|+.+.++.. ..+++.+.||.++||+|+++ |..|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999996 9999999999999999999999863 34788999999999999996 899999999999999987
Q ss_pred C
Q psy14324 76 G 76 (203)
Q Consensus 76 ~ 76 (203)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 33
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.79 E-value=6.1e-19 Score=108.32 Aligned_cols=72 Identities=32% Similarity=0.466 Sum_probs=66.1
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC----hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ----WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
++||+++.|++|++++++|+++|++|+.+.++..+ .+++.+.||.|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999998742 3578889999999999999999999999999999875
No 34
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.79 E-value=3.6e-19 Score=107.91 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=62.6
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEEC-CeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVD-GKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~-g~~l~es~~I~~yL~~ 73 (203)
++||+++.||+|+|+|++|.++|++|+.+.++........+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 579999999999999999999999999998886544445678999999999985 8999999999999974
No 35
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.78 E-value=6.1e-19 Score=108.35 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=65.4
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHh
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~ 74 (203)
++||+++.|++|+++|++|+++|++|+.+.++.. ..+++.+.||.|++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988864 2467889999999999999999999999999999863
No 36
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.78 E-value=6.1e-19 Score=107.19 Aligned_cols=70 Identities=51% Similarity=0.913 Sum_probs=63.8
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
++||+++.|++|+++|++|+++|++|+.+.++..+ .+++.+.||.+++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988753 24578899999999999999999999999999974
No 37
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.77 E-value=1.2e-18 Score=105.51 Aligned_cols=68 Identities=26% Similarity=0.259 Sum_probs=62.8
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYL 71 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL 71 (203)
++||+++.||+|+|++++|+++|++|+.+.++... .+++++.||.|+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 48999999999999999999999999999998763 467889999999999999 599999999999997
No 38
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.77 E-value=1.2e-18 Score=108.87 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=62.1
Q ss_pred CCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC
Q psy14324 10 PVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 10 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 76 (203)
..||+|+|+|++|.++||+|+.+.+++.. .+++++.||.|++|+|+++|.+++||.+|++||++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 56899999999999999999999999864 56799999999999999999999999999999999863
No 39
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=1.6e-18 Score=105.59 Aligned_cols=69 Identities=38% Similarity=0.526 Sum_probs=63.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
++||+++.||+|++++++|+++|++|+.+.++.. ..+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998863 35678899999999999999999999999999984
No 40
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.77 E-value=2.7e-18 Score=106.04 Aligned_cols=76 Identities=33% Similarity=0.492 Sum_probs=64.0
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCCh-hhhc--CCCCCCCCceEEECCeEeecHHHHHHHHHHhcCCC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQW-PEIK--PKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCGLN 78 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~-~~~~--~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~l~ 78 (203)
+++||+++.|+.+++++++|+++|++|+.+.++..+. .+.. ...|+|+||+|++||.+++||.||++||++++|++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~~~ 79 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYNLY 79 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999999998876321 1111 13479999999999999999999999999998864
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.77 E-value=1.5e-18 Score=106.26 Aligned_cols=70 Identities=34% Similarity=0.431 Sum_probs=64.8
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC---ChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE---QWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~~ 73 (203)
.+||+++.|++|++++++|+++|++|+.+.++.. ..+++++.||.|++|+|++ +|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 3799999999999999999999999999999975 4678999999999999998 58999999999999986
No 42
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.76 E-value=2.2e-18 Score=105.01 Aligned_cols=69 Identities=29% Similarity=0.328 Sum_probs=63.3
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
++||+++.|+++++++++|+++|++|+.+.++.. ..+++.+.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 34778999999999999999999999999999984
No 43
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.76 E-value=5.2e-18 Score=104.19 Aligned_cols=72 Identities=35% Similarity=0.426 Sum_probs=65.5
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 76 (203)
++||+++. +++++++++|+++|++|+.+.++.. +.+++.+.||.+++|+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999986 6899999999999999999998863 457899999999999999999999999999999999874
No 44
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.76 E-value=3.9e-18 Score=104.36 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=62.1
Q ss_pred ccEEEecC-------CCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 3 TYKLIYFP-------VKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 3 ~~~Ly~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
+++||+++ .||+|++++++|+++|++|+.+.++. .+.+|.|++|+|+++|.+++||.+|++||+++|
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~ 74 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL------AKRSPKGKLPFIELNGEKIADSELIIDHLEEKY 74 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHHc
Confidence 46999998 68999999999999999999988764 267999999999999999999999999999987
Q ss_pred C
Q psy14324 76 G 76 (203)
Q Consensus 76 ~ 76 (203)
|
T Consensus 75 ~ 75 (75)
T cd03080 75 G 75 (75)
T ss_pred C
Confidence 5
No 45
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.76 E-value=5.3e-18 Score=105.36 Aligned_cols=72 Identities=32% Similarity=0.541 Sum_probs=62.5
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-----hhhhcC-----CCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-----WPEIKP-----KMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-----~~~~~~-----~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
.+||+++.++.|+++|++|+++|++|+.+.+++.+ .+++.. .+|+++||+|++||.+++||.||++||++
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 47999999999999999999999999999998753 234432 23999999999999999999999999998
Q ss_pred hc
Q psy14324 74 QC 75 (203)
Q Consensus 74 ~~ 75 (203)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 46
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.75 E-value=4.8e-18 Score=104.59 Aligned_cols=72 Identities=32% Similarity=0.370 Sum_probs=64.8
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC----hhhhcCCCCCCCCceEEEC-CeEeecHHHHHHHHHHhcC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ----WPEIKPKMPFGKVPVLEVD-GKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~~-g~~l~es~~I~~yL~~~~~ 76 (203)
++||+++.+ .+++++++|.++|++|+.+.++..+ .+++++.||.+++|+|+++ |..++||.+|++||+++++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999965 5899999999999999999988753 5789999999999999996 8999999999999999874
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.75 E-value=3.6e-18 Score=104.34 Aligned_cols=69 Identities=36% Similarity=0.532 Sum_probs=62.9
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLA 72 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~ 72 (203)
++||+++.||+|+++|++|.++|++|+.+.++.. ..+++.+.||.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998863 2467899999999999996 7889999999999985
No 48
>KOG4244|consensus
Probab=99.75 E-value=4.3e-17 Score=118.00 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=127.0
Q ss_pred cEEEecC-------CCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcC
Q psy14324 4 YKLIYFP-------VKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 4 ~~Ly~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 76 (203)
+-||+++ .||+|.++..+|...+||||.+...+ ...+..|++|.++.+|+.+.||.-|..+|.++++
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~------~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~ 119 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL------KRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFK 119 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc------eeeccCCCcceEEeCCeeccccHHHHHHHHHHcC
Confidence 5677774 68999999999999999999987543 2457899999999999999999999999999997
Q ss_pred CCC-CChHHHHHHHHHHhHHHH-HHHHhh--------------------------------hhccCCChHhHH------h
Q psy14324 77 LNG-KDAWEDLQIDIAFETFND-FRAAVS--------------------------------SYHYDHHEESKK------L 116 (203)
Q Consensus 77 l~p-~~~~~~~~~~~~~~~~~~-~~~~~~--------------------------------~~~~~~~~~~~~------~ 116 (203)
+-. -++.++++.......++. ++-.+. ...+.+..-... =
T Consensus 120 ~~~~L~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f 199 (281)
T KOG4244|consen 120 IPDDLSAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDF 199 (281)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 443 456677777665555442 111000 000000000000 0
Q ss_pred hhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcc----cccccCchHHHHHHHHhc
Q psy14324 117 KWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQ----DLVENTPTLKKLRDEVLA 187 (203)
Q Consensus 117 ~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~----~~~~~~p~l~~w~~~~~~ 187 (203)
..+| ..+.+.+.|+.++..|+++ +||+|+++|-+|+++++.+..+..-... -+..++|+|..|++||++
T Consensus 200 ~~~E-i~ell~rDlr~i~~~Lg~K-kflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 200 ESAE-IDELLHRDLRAISDYLGDK-KFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred CHHH-HHHHHHHHHHHHHHHhCCC-ccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 0112 2256688899999999998 9999999999999999999987772111 134789999999999986
No 49
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.75 E-value=2.9e-17 Score=109.90 Aligned_cols=114 Identities=19% Similarity=0.351 Sum_probs=94.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYM 163 (203)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~ 163 (203)
++++++.+++.+.++...+...++....+ ...+...+.+.+.+..||++|+++ +|++|+++|+||+++++.+.++
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~T~aDi~l~~~~~~~ 76 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFE----KLKPDYLAKLPDKLKLFSDFLGDR-PWFAGDKITYVDFLLYEALDQH 76 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchH----HHHHHHHHHHHHHHHHHHHHhCCC-CCcCCCCccHHHHHHHHHHHHH
Confidence 57889999999999888887776643221 233334478899999999999876 9999999999999999999988
Q ss_pred hhhhcccccccCchHHHHHHHHhcCchHHHHHHhCCCCCC
Q psy14324 164 NVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQSEV 203 (203)
Q Consensus 164 ~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~ 203 (203)
.... ......+|+|.+|++++.++|++++++++++.|++
T Consensus 77 ~~~~-~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~~~~ 115 (121)
T cd03209 77 RIFE-PDCLDAFPNLKDFLERFEALPKISAYMKSDRFIKW 115 (121)
T ss_pred HHhC-ccccccChHHHHHHHHHHHCHHHHHHHhcccCcCC
Confidence 7643 34568999999999999999999999999998864
No 50
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=4.5e-18 Score=107.50 Aligned_cols=70 Identities=30% Similarity=0.397 Sum_probs=64.5
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCCh-hhhcCCCCCCCCceEEEC-CeEeecHHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQW-PEIKPKMPFGKVPVLEVD-GKQLHQSAAICRYLA 72 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~~-g~~l~es~~I~~yL~ 72 (203)
+++||+++.||+|++++++|+++|++|+.+.++.... +++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 6899999999999999999999999999999987643 468899999999999996 899999999999985
No 51
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.75 E-value=4.9e-18 Score=103.48 Aligned_cols=69 Identities=29% Similarity=0.329 Sum_probs=63.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCC----ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE----QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
++||+++.|++|+++|++|+++|++|+.+.++.. ..+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998863 34678899999999999999999999999999984
No 52
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.74 E-value=4.5e-18 Score=104.73 Aligned_cols=73 Identities=26% Similarity=0.356 Sum_probs=64.3
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEEC----CeEeecHHHHHHHHHHhcC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVD----GKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~----g~~l~es~~I~~yL~~~~~ 76 (203)
+++||+++.||+|++++++|.++||+|+.+.++....++. ..+|.++||+|+++ |.+++||.+|++||+++.|
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 4799999999999999999999999999999876544443 56999999999975 7899999999999998754
No 53
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=5.4e-18 Score=103.29 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=63.4
Q ss_pred cEEEecCCCCCchHHHHHHHh--CCCcceeeccCCC-ChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY--MEQDFEDYRFERE-QWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLA 72 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~--~gi~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~ 72 (203)
++||+++.||+|+++|++|.+ +|++|+.+.++.. +.+++.+.||.+++|+|++ ||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999864 4578899999999999996 8899999999999985
No 54
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.74 E-value=8.8e-17 Score=109.68 Aligned_cols=118 Identities=23% Similarity=0.347 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcchHHHHHHHHHHH
Q psy14324 83 WEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLSWADIYFVACLD 161 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s~aD~~l~~~l~ 161 (203)
.+.+.++.+++.+.++...+....+.... .+.+...++..+.+.+.++.||++|.++ ++|++|+++|+||+++++.+.
T Consensus 2 ~e~a~iD~i~~~v~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~ 80 (137)
T cd03208 2 KERALIDMYVEGTADLMEMILMLPFLPPE-EKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAIL 80 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHH
Confidence 36788999999999988888777764433 3333444555567889999999999842 489999999999999999999
Q ss_pred HHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCCCCC
Q psy14324 162 YMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQSE 202 (203)
Q Consensus 162 ~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~ 202 (203)
++.... ...+..+|+|++|++++.++|++++++++.+.++
T Consensus 81 ~~~~~~-~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~~~~ 120 (137)
T cd03208 81 MVEELD-PSLLSDFPLLQAFKTRISNLPTIKKFLQPGSPRK 120 (137)
T ss_pred HHHHhc-hhhhccChHHHHHHHHHHcCHHHHHHHhcCCCCC
Confidence 887643 4457899999999999999999999999877654
No 55
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.72 E-value=1.8e-16 Score=106.85 Aligned_cols=115 Identities=24% Similarity=0.348 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc--CCcccCCcchHHHHHHHHHH
Q psy14324 83 WEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNN--GGYLANGKLSWADIYFVACL 160 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~--g~fl~G~~~s~aD~~l~~~l 160 (203)
.+.+.++.+++.+.+++..+...++...... .+...+.+.+.+..||+.|+++ |+|++|+++|+||+++++.+
T Consensus 2 ~e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~ 76 (126)
T cd03210 2 KEAALIDMVNDGVEDLRLKYVRMIYQNYEAG-----KDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLL 76 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHH
Confidence 3678888888888898888877666432211 1223366889999999999863 48999999999999999999
Q ss_pred HHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhCCCCCC
Q psy14324 161 DYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKRPQSEV 203 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~ 203 (203)
.++.... ......+|+|.+|+++|.++|+++++++.++.++|
T Consensus 77 ~~~~~~~-~~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~~~~~ 118 (126)
T cd03210 77 DIHLVLA-PGCLDAFPLLKAFVERLSARPKLKAYLESDAFKNR 118 (126)
T ss_pred HHHHHhC-hHhhhcChHHHHHHHHHHhCcHHHHHHhCcCCCCC
Confidence 8887543 33578999999999999999999999999988765
No 56
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.71 E-value=2.9e-17 Score=100.65 Aligned_cols=69 Identities=41% Similarity=0.582 Sum_probs=58.7
Q ss_pred EEEecCCCCCchHHHHHHHhCCCcceeeccCCCC----hhhhcCCCCC-CCCceEEEC-CeEeecHHHHHHHHHH
Q psy14324 5 KLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ----WPEIKPKMPF-GKVPVLEVD-GKQLHQSAAICRYLAK 73 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~----~~~~~~~~p~-~~vP~l~~~-g~~l~es~~I~~yL~~ 73 (203)
+|++++..+++.++|++|+++|++|+.+.++..+ .+++.+.||. |++|+|+++ |..++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 4555555559999999999999999999999742 3889999999 999999998 9999999999999985
No 57
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9e-17 Score=109.45 Aligned_cols=183 Identities=17% Similarity=0.182 Sum_probs=126.4
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHHHhcCCCCCCh
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLAKQCGLNGKDA 82 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~~~~~l~p~~~ 82 (203)
|+||-+..||||.|+|++...+|||++.+....++.+.-.+.-...+||+|+- +|..+.||..|++|+++..|---.+.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 68999999999999999999999999999988876665666677889999997 89999999999999999987211112
Q ss_pred HHHHHHHHHHhHHHHHHHHhh-----h-------------hccCCChHh---HH---hhhhhhhhcchhhhHHHHHHHHh
Q psy14324 83 WEDLQIDIAFETFNDFRAAVS-----S-------------YHYDHHEES---KK---LKWEPLSKETIPYYQANFEELAK 138 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~---~~---~~~~~~~~~~l~~~l~~le~~l~ 138 (203)
.-+-.+..|+.-++...+.+. . +|..+.+.. .+ ....... +++...|+.+++++.
T Consensus 81 ~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~-~~i~~dl~~l~~Li~ 159 (215)
T COG2999 81 KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYL-KRIQADLRALDKLIV 159 (215)
T ss_pred CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHH-HHHHHHHHHHHHHhc
Confidence 223334445544444332211 1 111110000 00 0111222 677888889999886
Q ss_pred hcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHH
Q psy14324 139 NNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIK 192 (203)
Q Consensus 139 ~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 192 (203)
.. . -....+|+-|+.+|+.++++....+-.+ -.+++.|..+|.+...+.
T Consensus 160 ~~-s-~~n~~l~~ddi~vFplLRnlt~v~gi~w---ps~v~dy~~~msektqV~ 208 (215)
T COG2999 160 GP-S-AVNGELSEDDILVFPLLRNLTLVAGIQW---PSRVADYRDNMSEKTQVN 208 (215)
T ss_pred Cc-c-hhccccchhhhhhhHHhccceecccCCC---cHHHHHHHHHHHHhhCcc
Confidence 64 3 2334799999999999999888763322 236999999998866554
No 58
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.70 E-value=9.2e-17 Score=100.48 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=58.2
Q ss_pred CCCCCchHHHHHHHhCCCcceeeccCCCCh----hhhcCCCCCCCCceEEEC-CeEeecHHHHHHHHHHhcC
Q psy14324 10 PVKALAEPIRFLLSYMEQDFEDYRFEREQW----PEIKPKMPFGKVPVLEVD-GKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 10 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~----~~~~~~~p~~~vP~l~~~-g~~l~es~~I~~yL~~~~~ 76 (203)
+.||+|+++|++|.++|++|+.+.++..+. +++ +.||.+++|+|+++ |..++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 678999999999999999999999886532 233 68999999999998 8999999999999999874
No 59
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=2.1e-16 Score=96.05 Aligned_cols=65 Identities=31% Similarity=0.304 Sum_probs=59.0
Q ss_pred ecCCCCCchHHHHHHHhCCCcceeeccCCC---ChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 8 YFPVKALAEPIRFLLSYMEQDFEDYRFERE---QWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 8 ~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
....|+++++++++|+++|++|+.+.++.. ..+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 456899999999999999999999998875 34788899999999999999999999999999984
No 60
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.66 E-value=9.1e-17 Score=96.82 Aligned_cols=64 Identities=34% Similarity=0.412 Sum_probs=55.0
Q ss_pred CCCCchHHHHHHHhCCCcceeeccCC----C-ChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHHHh
Q psy14324 11 VKALAEPIRFLLSYMEQDFEDYRFER----E-QWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 11 ~s~~~~~v~~~L~~~gi~~~~~~~~~----~-~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~~~ 74 (203)
.|||++|++++|+++|++|+...+.. . ..+++.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999988843 1 2368999999999999999 899999999999999874
No 61
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.66 E-value=5.5e-16 Score=93.35 Aligned_cols=69 Identities=36% Similarity=0.448 Sum_probs=62.6
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChh--hhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWP--EIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~--~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
++||+++.||+|++++++|+++|++|+.+.++..... ++.+.+|.+++|+|.++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998875322 47788999999999999999999999999984
No 62
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.65 E-value=6.1e-16 Score=93.88 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=58.9
Q ss_pred cEEEecC-------CCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHh
Q psy14324 4 YKLIYFP-------VKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 4 ~~Ly~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~ 74 (203)
++||.++ .||+|++++++|+++|++|+.+.++... .+|.|++|+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~------~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW------RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc------cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 4688887 8999999999999999999999987532 789999999999999999999999999874
No 63
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.2e-15 Score=111.10 Aligned_cols=184 Identities=18% Similarity=0.155 Sum_probs=138.6
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcc--eeeccCC--CC--h---hh------------------hcCC----CCCCCCc
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDF--EDYRFER--EQ--W---PE------------------IKPK----MPFGKVP 52 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~--~~~~~~~--~~--~---~~------------------~~~~----~p~~~vP 52 (203)
+.||..-.||+++|..++=.++|++- ....+++ .+ | ++ |... +..-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 68999999999999999999999742 1222221 10 0 11 1111 2345799
Q ss_pred eEEEC---CeEeecHHHHHHHHHHhcC--------CCCCChHHHHHHHHHHhHHHH-HHHHhhhhccCCChHhHHhhhhh
Q psy14324 53 VLEVD---GKQLHQSAAICRYLAKQCG--------LNGKDAWEDLQIDIAFETFND-FRAAVSSYHYDHHEESKKLKWEP 120 (203)
Q Consensus 53 ~l~~~---g~~l~es~~I~~yL~~~~~--------l~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (203)
+|.+. -.+-.||..|++.+...+. ++| ...+.+++.+.+++.+ +.....+.-+....+..++..
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP--~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~-- 207 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYP--EALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV-- 207 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCC--HHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHH--
Confidence 99993 3677899999999987662 788 6688999999999875 556666666666666555555
Q ss_pred hhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhh----cc--cccccCchHHHHHHHHhcCchHHHH
Q psy14324 121 LSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMA----KQ--DLVENTPTLKKLRDEVLAIPTIKKW 194 (203)
Q Consensus 121 ~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~----~~--~~~~~~p~l~~w~~~~~~~~~~~~~ 194 (203)
+.+-+.|+.||+.|+++ .|++|+++|.||+-+++.+.++..+- .. .-...||+|..|+..+-+.|++++.
T Consensus 208 ---~~lF~~Ld~lE~~L~~~-ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T 283 (324)
T COG0435 208 ---KKLFEALDKLEQILSER-RYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAET 283 (324)
T ss_pred ---HHHHHHHHHHHHHhhcC-eeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccc
Confidence 56668999999999997 99999999999999999999887543 12 2346799999999999999998764
Q ss_pred H
Q psy14324 195 V 195 (203)
Q Consensus 195 ~ 195 (203)
.
T Consensus 284 ~ 284 (324)
T COG0435 284 V 284 (324)
T ss_pred c
Confidence 3
No 64
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.61 E-value=7.8e-15 Score=95.99 Aligned_cols=105 Identities=10% Similarity=0.146 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhHHHH-HHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHH
Q psy14324 82 AWEDLQIDIAFETFND-FRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACL 160 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l 160 (203)
+.+++++..|+.++.. +...+...... .. +. .+...+.+.+.+..||++|+++ +|++|+++|+|||++++.+
T Consensus 1 p~~ra~~r~w~~~~~~~~~~~~~~~~~~-~~----~~-~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~t~aDi~~~~~~ 73 (107)
T cd03186 1 PVARARSRLLMHRIEQDWYPLVDTIEKG-RK----KE-AEKARKELRESLLALAPVFAHK-PYFMSEEFSLVDCALAPLL 73 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhC-cH----HH-HHHHHHHHHHHHHHHHHHHcCC-CcccCCCCcHHHHHHHHHH
Confidence 3578999999999886 44443333322 21 11 2233478889999999999875 9999999999999999998
Q ss_pred HHHhhhhcccccccCchHHHHHHHHhcCchHHHH
Q psy14324 161 DYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKW 194 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~ 194 (203)
.+....+ ..+...+|++++|++++.++|++++.
T Consensus 74 ~~~~~~~-~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 74 WRLPALG-IELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHcC-CCCcccchHHHHHHHHHHCCHHHHHh
Confidence 6554332 33446899999999999999999875
No 65
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.61 E-value=4.2e-15 Score=98.43 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=83.0
Q ss_pred CChHHHHHHHHHHhHHHH-HHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHH
Q psy14324 80 KDAWEDLQIDIAFETFND-FRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVA 158 (203)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~ 158 (203)
.++..++++++|+.+... +...+....+....+.. . .+...+++.+.++.||++|+++ +|++|+++|+|||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~i~~~l~~le~~L~~~-~yl~Gd~~tlADi~l~~ 77 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEE--S-EEEYRQQAEAFLKDLEARLQQH-SYLLGDKPSLADWAIFP 77 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcc--c-HHHHHHHHHHHHHHHHHHHccC-CccCCCCccHHHHHHHH
Confidence 368899999999999875 44444443333222211 1 2233478999999999999986 99999999999999999
Q ss_pred HHHHHhhhhc-ccccccCchHHHHHHHHhcCchHHHH
Q psy14324 159 CLDYMNVMAK-QDLVENTPTLKKLRDEVLAIPTIKKW 194 (203)
Q Consensus 159 ~l~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~~~~~ 194 (203)
.+.++..... .....++|+|.+|++++.++|+++++
T Consensus 78 ~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 78 FVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 8877654321 12358999999999999999999985
No 66
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.61 E-value=4.6e-15 Score=98.08 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=80.4
Q ss_pred HHHHHHHHHhHHHH-HHHHhhhhccCCC---hHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFND-FRAAVSSYHYDHH---EESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~ 159 (203)
+++++++|+.|..+ +...+........ .....+...+...+++.+.++.||+.|+++ +|++|+++|+|||++++.
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~-~~l~G~~~t~aDi~~~~~ 80 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGG-PYLLGDRFSVADAYLFVV 80 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCC-CeeeCCCcchHHHHHHHH
Confidence 57889999999875 3333333332211 112222333445588999999999999875 999999999999999999
Q ss_pred HHHHhhhhcccccccCchHHHHHHHHhcCchHHHHH
Q psy14324 160 LDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWV 195 (203)
Q Consensus 160 l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 195 (203)
+.++.... . ...++|++.+|+++|.++|++++++
T Consensus 81 ~~~~~~~~-~-~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 81 LRWAPGVG-L-DLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHhhcC-C-ChhhChHHHHHHHHHHhCHHhHhhC
Confidence 98776542 2 3568999999999999999999863
No 67
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.60 E-value=8.1e-15 Score=98.49 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=84.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcchHHHHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLSWADIYFVACLDY 162 (203)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s~aD~~l~~~l~~ 162 (203)
++++.+.|+++++.+...+...+.. ++ ...+. .+.+.+.++.+|+.|.++ |+|++|+++|+||+++++++.+
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~--~~----~~~~~-~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~ 74 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGA--PS----DREEK-KAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFER 74 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhc--cc----cchhh-HHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHH
Confidence 5788899999988777666665553 11 11222 267888999999999862 5999999999999999999988
Q ss_pred Hhhhhcc----cccccCchHHHHHHHHhcCchHHHHHHhC
Q psy14324 163 MNVMAKQ----DLVENTPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 163 ~~~~~~~----~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
+...... ...+.+|+|++|+++|.++|++++++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~ 114 (124)
T cd03184 75 LEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDT 114 (124)
T ss_pred HHHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCH
Confidence 7655311 24688999999999999999999998764
No 68
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.59 E-value=1.5e-14 Score=99.41 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhHHHHHH-HHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHH
Q psy14324 83 WEDLQIDIAFETFNDFR-AAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLD 161 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~ 161 (203)
..+++++.|++|..+.. ..+.........+. ..+ ..+++.+.|+.||+.|+++ +|++|+++|+||+++++.+.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~l~~~l~~LE~~L~~~-~yl~Gd~~TlADi~l~~~l~ 76 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEA----YDE-AVDELFEALDRLEELLSDR-RYLLGDRLTEADIRLFTTLI 76 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHH----HHH-HHHHHHHHHHHHHHHHccC-CeeeCCCccHHHHHHHHHHH
Confidence 46788999999998644 33333222222221 122 2378889999999999876 99999999999999999988
Q ss_pred HHhhhh------cccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 162 YMNVMA------KQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 162 ~~~~~~------~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
++.... +......+|+|.+|+++|.++|++++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 77 RFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred HHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCH
Confidence 764321 112356899999999999999999987754
No 69
>KOG2903|consensus
Probab=99.59 E-value=2.3e-15 Score=108.63 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=135.0
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCc----ceeecc-CCC------C-------h------h----------h-hcCC---
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQD----FEDYRF-ERE------Q-------W------P----------E-IKPK--- 45 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~----~~~~~~-~~~------~-------~------~----------~-~~~~--- 45 (203)
+-||..-.||+++|+.+++.++|+. +..+.- .-+ + . + + |...
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 6799999999999999999999973 332222 100 0 0 0 0 0001
Q ss_pred -CCCCCCceEEE---CCeEeecHHHHHHHHHHhc------------CCCCCChHHHHHHHHHHhHHHH-HHHHhhhhccC
Q psy14324 46 -MPFGKVPVLEV---DGKQLHQSAAICRYLAKQC------------GLNGKDAWEDLQIDIAFETFND-FRAAVSSYHYD 108 (203)
Q Consensus 46 -~p~~~vP~l~~---~g~~l~es~~I~~yL~~~~------------~l~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 108 (203)
...-+||+|.| ...+-.||..|++.+.+.+ .|+| +..+++++.+.+|+.+ +-......-+.
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~~INNGVYk~GFA 195 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYDKINNGVYKCGFA 195 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecccccCceeeeccc
Confidence 22447999999 3467889999999999433 1677 6688999999999875 55566666665
Q ss_pred CChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcchHHHHHHHHHHHHHhhhhc-------ccccccCchHHH
Q psy14324 109 HHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLSWADIYFVACLDYMNVMAK-------QDLVENTPTLKK 180 (203)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s~aD~~l~~~l~~~~~~~~-------~~~~~~~p~l~~ 180 (203)
...+..+... ..+-+.|+.+|+.|+++ +.|++|+++|.||+.+++.+.++..+-- ..+..+||+|..
T Consensus 196 ~~~e~Ye~~V-----~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~ 270 (319)
T KOG2903|consen 196 EKQEAYEEEV-----NQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHN 270 (319)
T ss_pred cccchHHHHH-----HHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHH
Confidence 5555554444 66779999999999998 3599999999999999999988876541 234569999999
Q ss_pred HHHHHhc-CchHHHH
Q psy14324 181 LRDEVLA-IPTIKKW 194 (203)
Q Consensus 181 w~~~~~~-~~~~~~~ 194 (203)
|.+.+-. .|+++..
T Consensus 271 ~lk~iY~~~~~~~~T 285 (319)
T KOG2903|consen 271 WLKNIYWNIPGFSST 285 (319)
T ss_pred HHHHHHhhccchhhc
Confidence 9999887 7777653
No 70
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.58 E-value=1.7e-14 Score=96.17 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=80.2
Q ss_pred CCChHHHHHHHHHHhHHHH-HHHHhhhhc-cC--CCh------HhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCc
Q psy14324 79 GKDAWEDLQIDIAFETFND-FRAAVSSYH-YD--HHE------ESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGK 148 (203)
Q Consensus 79 p~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--~~~------~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~ 148 (203)
|.++.+++++++|+.+... +...+.... .. ... +...+...+...+++.+.++.||++|+++ +|++|++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~Gd~ 80 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKK-GYFVGDK 80 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccC-CCCCCCC
Confidence 5688999999999999865 444332221 11 110 11223333444478999999999999886 9999999
Q ss_pred chHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCc
Q psy14324 149 LSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIP 189 (203)
Q Consensus 149 ~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 189 (203)
+|+|||++++.+.++.... . ....+|+|++|++++.++|
T Consensus 81 ~t~ADi~l~~~~~~~~~~~-~-~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 81 LTAADIMMSFPLEAALARG-P-LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCHHHHHHHHHHHHHHHcC-c-ccccCchHHHHHHHHhcCC
Confidence 9999999999998876543 2 4689999999999999886
No 71
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.58 E-value=1.7e-14 Score=97.14 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhHHHH-HHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHH
Q psy14324 83 WEDLQIDIAFETFND-FRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLD 161 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~ 161 (203)
.+++++..|+.+++. +...+...+.. .. ... +...+.+.+.++.||++|.++ +|++|+++|+|||++++.+.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~-~~----~~~-~~~~~~~~~~l~~le~~L~~~-~~l~G~~~t~ADi~l~~~~~ 74 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAA-KG----EER-EKAKEEALEALKVLEEELGGK-PFFGGDTIGYVDIALGSFLG 74 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcc-ch----HHH-HHHHHHHHHHHHHHHHHhcCC-CCCCCCCcchHHHHHHHHHH
Confidence 478889999999875 33333333322 11 111 223378889999999999875 99999999999999999998
Q ss_pred HHhhhh---ccc--ccccCchHHHHHHHHhcCchHHHHHHhC
Q psy14324 162 YMNVMA---KQD--LVENTPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 162 ~~~~~~---~~~--~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
++.... +.. ....+|++++|+++|.++|++++++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 75 WFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 875432 222 2477999999999999999999987653
No 72
>KOG3027|consensus
Probab=99.56 E-value=2.7e-13 Score=94.81 Aligned_cols=171 Identities=12% Similarity=0.126 Sum_probs=125.4
Q ss_pred CCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhcCCCC--CChHHHHH
Q psy14324 10 PVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQCGLNG--KDAWEDLQ 87 (203)
Q Consensus 10 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~~l~p--~~~~~~~~ 87 (203)
|...-|..|..+|+.+++||..+--+.. ++ .+|.|+||.|..|...++|-.+|+.++.++---.. .+..+++.
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Na---ef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkad 106 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANA---EF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKAD 106 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCc---cc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHHH
Confidence 3446689999999999999998764332 22 48999999999999999999999999999853222 25678888
Q ss_pred HHHHHhHHHHHHHHhhhhccCCChH-----------------------------h---------HHhhhhhhhhcchhhh
Q psy14324 88 IDIAFETFNDFRAAVSSYHYDHHEE-----------------------------S---------KKLKWEPLSKETIPYY 129 (203)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~---------~~~~~~~~~~~~l~~~ 129 (203)
++.+++.++.++.....+....++. . .+....+.. +++.++
T Consensus 107 mra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVi-e~vdkc 185 (257)
T KOG3027|consen 107 MRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVI-EQVDKC 185 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHH-HHHHHH
Confidence 8888888776553221111000000 0 001222333 778899
Q ss_pred HHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhc-----ccccccCchHHHHHHHHhc
Q psy14324 130 QANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAK-----QDLVENTPTLKKLRDEVLA 187 (203)
Q Consensus 130 l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~-----~~~~~~~p~l~~w~~~~~~ 187 (203)
.+.|+..|+.+ +||.|++||-+|..+++++.-+....- .....+|++|-++++|+.+
T Consensus 186 ~~aLsa~L~~q-~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 186 CRALSAQLGSQ-PYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHHHhcCC-CccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999988 999999999999999999987765431 2345789999999999985
No 73
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.56 E-value=9.6e-15 Score=97.17 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=61.5
Q ss_pred hcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHH
Q psy14324 123 KETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWV 195 (203)
Q Consensus 123 ~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 195 (203)
.+.+.+.++.||++|+++ +|++|+++|+|||++++++.++.........+++|+|++|++++.++|++++++
T Consensus 47 ~~~~~~~l~~le~~L~~~-~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 47 EEKLKKVLDVYEARLSKS-KYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHHHHHHcccC-cccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 478999999999999875 999999999999999999987764322234578999999999999999998763
No 74
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.56 E-value=7.3e-14 Score=93.22 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhh--cCCcccCCcchHHHHHHHH
Q psy14324 81 DAWEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKN--NGGYLANGKLSWADIYFVA 158 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~--~g~fl~G~~~s~aD~~l~~ 158 (203)
|+..|+.+++++.|...+...+......+... +.+.+.++.||+.|++ +++|++| ++|+|||++++
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~ 68 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDPS-----------AEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVP 68 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHH
Confidence 46789999999998433433333333322211 3456778889998874 2499999 99999999999
Q ss_pred HHHHHhh----hhcccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 159 CLDYMNV----MAKQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 159 ~l~~~~~----~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
.+.++.. ..+.+...++|+|.+|+++|.++|+++++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 69 FIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 9987653 12244457899999999999999999987653
No 75
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.56 E-value=3.2e-14 Score=94.56 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHhHHHH-HHHHhhhhccC----CC---hHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHH
Q psy14324 81 DAWEDLQIDIAFETFND-FRAAVSSYHYD----HH---EESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWA 152 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~a 152 (203)
|+.+++++++|+.|+.. +...+...+.. .. .....+...+...+++.+.+..||++|+++ +|++|+++|+|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~-~~l~gd~~t~a 79 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGS-PYVAGDRFTIA 79 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCC-CcccCCCCCHH
Confidence 46789999999999764 44443322211 01 011222233344478999999999999876 89999999999
Q ss_pred HHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchH
Q psy14324 153 DIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTI 191 (203)
Q Consensus 153 D~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 191 (203)
||++++.+.++...+ .++...+|+|.+|++++.++|++
T Consensus 80 Di~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 80 DITAFVGLDFAKVVK-LRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHhHHHHhcC-CCCccccHHHHHHHHHHHhccCC
Confidence 999999999877653 44457899999999999999974
No 76
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.55 E-value=6.3e-14 Score=89.63 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=76.3
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHhHHH-HHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccC
Q psy14324 68 CRYLAKQCGLNGKDAWEDLQIDIAFETFN-DFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLAN 146 (203)
Q Consensus 68 ~~yL~~~~~l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G 146 (203)
+|||++..|++|.+..+.++++.|++... ++.. +. .+++.+.++.+|++|+++ +|++|
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~vd~~~d~~~~~l~~--------~~------------~~~~~~~l~~le~~L~~~-~fl~G 59 (96)
T cd03200 1 ARFLYRLLGPAPNAPNAATNIDSWVDTAIFQLAE--------GS------------SKEKAAVLRALNSALGRS-PWLVG 59 (96)
T ss_pred CchHHHHhcccCCCchHHHHHHHHHHHHHHHHhc--------CC------------HHHHHHHHHHHHHHHcCC-CccCC
Confidence 47898888899999999999999999765 4331 11 145557888999999886 99999
Q ss_pred CcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcC
Q psy14324 147 GKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAI 188 (203)
Q Consensus 147 ~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 188 (203)
+++|+|||++++.+.+. . .....+|+|.+|++||.++
T Consensus 60 d~~tiADi~l~~~l~~~---~--~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 60 SEFTVADIVSWCALLQT---G--LASAAPANVQRWLKSCENL 96 (96)
T ss_pred CCCCHHHHHHHHHHHHc---c--cccccChHHHHHHHHHHhC
Confidence 99999999999988653 1 1236899999999999863
No 77
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.55 E-value=2e-14 Score=96.19 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhHHHH-HHHHhhhhcc---CCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcchHHHHHHH
Q psy14324 83 WEDLQIDIAFETFND-FRAAVSSYHY---DHHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLSWADIYFV 157 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s~aD~~l~ 157 (203)
.+++++++|+.++.+ +.......+. .......++...+...+.+.+.|..||++|.++ ++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 578899999999874 3322111111 000000011222333366889999999999852 48999999999999999
Q ss_pred HHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHhC
Q psy14324 158 ACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
+.+.+..... . ....+|+|++|++++.++|+++++...+
T Consensus 82 ~~~~~~~~~~-~-~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNARRFG-V-DLSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHhC-C-CcccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 9998766432 2 2588999999999999999999987654
No 78
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.52 E-value=1.4e-13 Score=88.04 Aligned_cols=68 Identities=31% Similarity=0.526 Sum_probs=59.5
Q ss_pred hhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhccccc-ccCchHHHHHHHHhcCc
Q psy14324 120 PLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLV-ENTPTLKKLRDEVLAIP 189 (203)
Q Consensus 120 ~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~-~~~p~l~~w~~~~~~~~ 189 (203)
+....++.+.|+.+|+.|+++ +|++|+++|+||+++++.+.++.... .... +++|+|++|+++|.++|
T Consensus 27 ~~~~~~~~~~l~~le~~l~~~-~~l~G~~~t~ADi~~~~~~~~~~~~~-~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 27 EEARAKVPRYLEVLEKRLKGG-PYLVGDKLTIADIALFPMLDWLERLG-PDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-SSSSBSS-CHHHHHHHHHHHHHHHHT-TTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CeeeccCCchhHHHHHHHHHHHHHhC-CCcccccCHHHHHHHHHHHcCC
Confidence 333488999999999999975 99999999999999999999998886 4444 99999999999999987
No 79
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.52 E-value=4.9e-14 Score=94.92 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=62.0
Q ss_pred hhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhc--CchHHHHHHh
Q psy14324 122 SKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLA--IPTIKKWVEK 197 (203)
Q Consensus 122 ~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~--~~~~~~~~~~ 197 (203)
..+.+.+.++.+|+++.++++|++|+++|+|||++++.+.+..... .....++|+|.+|++++.+ +|+++++.+.
T Consensus 46 ~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~ 122 (126)
T cd03183 46 AEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAG-YDVFEGRPKLAAWRKRVKEAGNPLFDEAHKI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcC-CcccccCchHHHHHHHHHHhcchhHHHHHHH
Confidence 4478899999999985432489999999999999999887776543 3346899999999999999 9999997653
No 80
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.51 E-value=6e-14 Score=93.41 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=77.9
Q ss_pred HHHHHHHHHhHHHH-HHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFND-FRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDY 162 (203)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~ 162 (203)
+++++++|+.|... +...+...+...... .....+...+++.+.++.||++|+++ +|++|+++|+||+++++.+.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~s~aDi~l~~~~~~ 78 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFG--GAEPPEEKLDKLEEALDFLETFLEGS-DYVAGDQLTIADLSLVATVST 78 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHccC-CeeCCCCcCHHHHHHHHHHHH
Confidence 46788888888753 433332222110000 00112233478899999999999876 999999999999999999998
Q ss_pred HhhhhcccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 163 MNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
+.... ......+|+|.+|+++|.++|++++....
T Consensus 79 ~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 112 (118)
T cd03177 79 LEALL-PLDLSKYPNVRAWLERLKALPPYEEANGK 112 (118)
T ss_pred HHHhc-CCChhhCchHHHHHHHHHcccchHHHHHH
Confidence 86522 22256799999999999999999986643
No 81
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.50 E-value=2.5e-13 Score=88.34 Aligned_cols=100 Identities=37% Similarity=0.658 Sum_probs=80.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhh--cCCcccCCcchHHHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKN--NGGYLANGKLSWADIYFVACLD 161 (203)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~--~g~fl~G~~~s~aD~~l~~~l~ 161 (203)
++++++.+++..+++...+...++........+.......+.+.+.++.||+.|.+ + +|++|+++|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~-~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGG-GYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-CeeeCCCccHHHHHHHHHHH
Confidence 56788999999989998888887754432223344444558899999999999987 5 99999999999999999999
Q ss_pred HHhhhhcccc-cccCchHHHHHHHH
Q psy14324 162 YMNVMAKQDL-VENTPTLKKLRDEV 185 (203)
Q Consensus 162 ~~~~~~~~~~-~~~~p~l~~w~~~~ 185 (203)
++.... ... ...+|+|++|++++
T Consensus 81 ~~~~~~-~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLD-PKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHhhC-chhhHHhChhHHHHHHhC
Confidence 887664 333 77899999999875
No 82
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.50 E-value=2.1e-13 Score=91.68 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=73.0
Q ss_pred HHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhh--------------c-CCcccCCcchHHHHHHHHH
Q psy14324 95 FNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKN--------------N-GGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~--------------~-g~fl~G~~~s~aD~~l~~~ 159 (203)
..+++.++..++....++ ..+..++++.+.|+.||++|.+ . ++|++|+++|+|||++++.
T Consensus 8 ~~~~f~~~~~~~~~~~~~-----~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~ 82 (134)
T cd03198 8 GEDIFAKFSAYIKNSNPA-----LNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPK 82 (134)
T ss_pred HHHHHHHHHHHHcCCChh-----hhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHH
Confidence 344555555555443322 2233447888999999999986 1 3899999999999999999
Q ss_pred HHHHhhhh----cccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 160 LDYMNVMA----KQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 160 l~~~~~~~----~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
+.++.... +....+.+|+|.+|++++.++|++++.+..
T Consensus 83 L~~~~~~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~ 124 (134)
T cd03198 83 LHIVKVVAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPA 124 (134)
T ss_pred HHHHHHHHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCC
Confidence 98775431 233458899999999999999999987654
No 83
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.50 E-value=1.2e-14 Score=96.04 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=77.4
Q ss_pred HHHHHHHHHhHHHH-HHHHhhhhc-c--CCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFND-FRAAVSSYH-Y--DHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~ 159 (203)
+++++++|+.|.+. +...+...+ . ... ... +...+...+++.+.++.+|+.|+++ +|++|+++|+|||++++.
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~le~~L~~~-~~l~G~~~t~aDi~l~~~ 77 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAP-EKI-PYAIERYTNEAKRLYGVLDKRLAGR-DYLAGDEYSIADIAIFPW 77 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCC-CCC-hHHHHHHHHHHHHHHHHHHHHHccC-CcccCCCCCeeeeeHHHH
Confidence 36778888888764 222222111 1 011 111 1122233478899999999999875 999999999999999999
Q ss_pred HHHHhhhhcccccccCchHHHHHHHHhcCchHHHHH
Q psy14324 160 LDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWV 195 (203)
Q Consensus 160 l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 195 (203)
+.+..... ......+|++.+|++++.++|++++++
T Consensus 78 ~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 78 VRRLEWIG-IDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHhcc-ccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 98886553 334678999999999999999999875
No 84
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.48 E-value=1.2e-13 Score=92.62 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHHHHhHHHH-HHHHhhhhccC--CChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHH
Q psy14324 85 DLQIDIAFETFND-FRAAVSSYHYD--HHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLD 161 (203)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~ 161 (203)
+++++.|+.+... +...+...+.. ..... +....+...+++.+.++.||+.|+.+ +|++|+++|+||+++++.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~l~~~-~~l~G~~~siaDi~l~~~~~ 79 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPY-NKKSVEAALEELDRVLGVLEERLLKR-TYLVGERLTLADIFVAGALL 79 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCC-CHHHHHHHHHHHHHHHHHHHHHHccC-ceeccCCccHHHHHHHHHHH
Confidence 5678888888764 33333222211 10001 11223334478899999999999886 99999999999999999998
Q ss_pred HHhhhh-cccccccCchHHHHHHHHhcCchHHHHHHhC
Q psy14324 162 YMNVMA-KQDLVENTPTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 162 ~~~~~~-~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
+..... +......+|++.+|++++.++|++++++++-
T Consensus 80 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 80 LGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 875432 1223478999999999999999999987754
No 85
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.48 E-value=1.7e-13 Score=89.95 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=72.9
Q ss_pred HHHHHHHHHhHHHH-HHHHhhhhcc---CCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFND-FRAAVSSYHY---DHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~ 159 (203)
+++++++|+.+..+ +...+...+. ....+...+...+...+++.+.++.+|++|+++ +|++|+++|+||+++++.
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~-~~l~g~~~t~aDi~~~~~ 80 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGR-PYLAGDRFTLADIPLGCS 80 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCC-CcccCCCCCHHHHHHHHH
Confidence 46788889888754 3333322111 111112222222334478999999999999876 999999999999999998
Q ss_pred HHHHhhhhcccccccCchHHHHHHHHhcCchH
Q psy14324 160 LDYMNVMAKQDLVENTPTLKKLRDEVLAIPTI 191 (203)
Q Consensus 160 l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 191 (203)
+...... .....++|+|++|+++|.++|++
T Consensus 81 ~~~~~~~--~~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 81 AYRWFEL--PIERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHc--ccccccCchHHHHHHHHHhCCCC
Confidence 8543322 12468899999999999999974
No 86
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.47 E-value=2.7e-13 Score=81.50 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=50.4
Q ss_pred CCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHh
Q psy14324 10 PVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 10 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~ 74 (203)
+.+++|.+++++|++.|+||+.+.+... -..+|.|+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~-----~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANA-----EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCc-----cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 4578899999999999999998843211 12578899999999999999999999999864
No 87
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=8e-13 Score=87.38 Aligned_cols=111 Identities=10% Similarity=0.071 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhh-hccCC-ChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHH
Q psy14324 82 AWEDLQIDIAFETFNDFRAAVSS-YHYDH-HEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~ 159 (203)
+.+++++..|+.|+.+-...... ..+.. -.........+..++.+.+.+..+|.++.++++||+| ++|+||+++++.
T Consensus 1 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~ 79 (114)
T cd03195 1 PRQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALM 79 (114)
T ss_pred CHhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHH
Confidence 35789999999999854433211 11000 0000011122334467788899999999642389999 599999999999
Q ss_pred HHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 160 LDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 160 l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
+.+....+ .++ + |++.+|++||.++|+++++++.
T Consensus 80 ~~~~~~~g-~~l-~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 80 LNRLVLNG-DPV-P--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHcC-CCC-C--HHHHHHHHHHHCCHHHHHHHhc
Confidence 99998874 333 3 9999999999999999999864
No 88
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.45 E-value=6.8e-13 Score=88.51 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=61.0
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhc----ccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAK----QDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~----~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
+.+.+.|..||+.|+++|+|++|+++|+||+++++.+.++....+ ....+.+|+|.+|+++|.++|++++.+..
T Consensus 33 ~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~~~ 110 (121)
T cd03201 33 QALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTKAE 110 (121)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcCCC
Confidence 668889999999998534999999999999999998877764321 22347999999999999999999987653
No 89
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.43 E-value=5.5e-13 Score=86.58 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=63.0
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
+++.+.++.||++|+++ +|++|+++|+|||++++.+.+..... ....+|+|++|++++.++|+++++.++
T Consensus 33 ~~~~~~l~~le~~l~~~-~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 33 GSYDDVLAALEQALAKG-PYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhHHHHHHHHHHHHccC-CcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 77999999999999886 99999999999999999999877542 357899999999999999999998765
No 90
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.39 E-value=1.5e-12 Score=78.23 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=53.0
Q ss_pred hhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhc-ccccccCchHHHHHHH
Q psy14324 122 SKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAK-QDLVENTPTLKKLRDE 184 (203)
Q Consensus 122 ~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~-~~~~~~~p~l~~w~~~ 184 (203)
.++++.+.++.||++|+++ +|++|++||+||+++++.+.++..... ......+|+|.+|++|
T Consensus 7 ~~~~~~~~l~~le~~L~~~-~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 7 ARAQLEAALDALEDHLADG-PFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 4488899999999999997 899999999999999999999998863 2456899999999986
No 91
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.36 E-value=7.8e-12 Score=82.62 Aligned_cols=71 Identities=21% Similarity=0.408 Sum_probs=56.3
Q ss_pred hhhcchhhhHHHHHHHHhh--cCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHH
Q psy14324 121 LSKETIPYYQANFEELAKN--NGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVE 196 (203)
Q Consensus 121 ~~~~~l~~~l~~le~~l~~--~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 196 (203)
...+.+.+.+..+|.++.. +|+|++|+ +|+||+++++.+.+....+ .+ ..|+|++|++++.++|+++++++
T Consensus 41 ~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~-~~---~~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 41 AVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYG-LP---LSPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHHCCHHHHHHHh
Confidence 3345666777777777752 24899999 9999999999999886542 22 23999999999999999999986
No 92
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.34 E-value=4.4e-12 Score=82.71 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=57.3
Q ss_pred hcchhhhHHHHHHHHhhcC---------CcccCCcchHHHHHHHHHHHHHhhhhcccc----cccCchHHHHHHHHhcCc
Q psy14324 123 KETIPYYQANFEELAKNNG---------GYLANGKLSWADIYFVACLDYMNVMAKQDL----VENTPTLKKLRDEVLAIP 189 (203)
Q Consensus 123 ~~~l~~~l~~le~~l~~~g---------~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~----~~~~p~l~~w~~~~~~~~ 189 (203)
..++...++.||++|.++. +|++|+++|+|||++++.+.++.... ... ...+|+|.+|++||.++|
T Consensus 31 ~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~-~~~~~~~~~~~P~l~~w~~rv~aRp 109 (111)
T cd03204 31 LDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLG-LSRRYWGNGKRPNLEAYFERVLQRE 109 (111)
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcC-ccccccccccChHHHHHHHHHHcCC
Confidence 3788999999999997641 59999999999999999999887643 222 368999999999999999
Q ss_pred hH
Q psy14324 190 TI 191 (203)
Q Consensus 190 ~~ 191 (203)
++
T Consensus 110 sf 111 (111)
T cd03204 110 SF 111 (111)
T ss_pred CC
Confidence 75
No 93
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.33 E-value=6.6e-12 Score=80.88 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhc-CCcccCCcchHHHHHHHHHH
Q psy14324 82 AWEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNN-GGYLANGKLSWADIYFVACL 160 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~-g~fl~G~~~s~aD~~l~~~l 160 (203)
+...+.+++|+++- . ................+...+.+.+.+..++++|+++ |+|++|++||+||+++++.+
T Consensus 3 ~~~~a~i~~W~~f~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l 75 (99)
T PF14497_consen 3 PYWRALIDRWLDFS-----V--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFL 75 (99)
T ss_dssp -TTHHHHHHHHH-G-----H--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHH
T ss_pred hHHHHHHHHHHhcc-----c--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHH
Confidence 45566777777743 1 1111222333444455666689999999999999997 34999999999999999999
Q ss_pred HHHhhhhcccccccCchHHHHHHHHhc
Q psy14324 161 DYMNVMAKQDLVENTPTLKKLRDEVLA 187 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~w~~~~~~ 187 (203)
..+... ....++|+|.+|++||++
T Consensus 76 ~~~~~~---~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 76 ASLRWA---DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHCC---HHTTTCHHHHHHHHHHHT
T ss_pred HHHhhc---ccccccHHHHHHHHhhcC
Confidence 666532 112699999999999974
No 94
>PRK10638 glutaredoxin 3; Provisional
Probab=99.31 E-value=8.2e-12 Score=77.74 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=64.7
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
|+.+++|+.+.||+|++++.+|+.+|++|+.++++... .+++.+.++..++|++..||..+.+...+..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 88899999999999999999999999999999998653 45677889999999999999999999888776543
No 95
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.31 E-value=2.2e-12 Score=83.94 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=69.3
Q ss_pred HHHHHHHHHhHHHHHHH-HhhhhccC---CChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHH
Q psy14324 84 EDLQIDIAFETFNDFRA-AVSSYHYD---HHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~ 159 (203)
+++++++|+.+...... .+...... ......++...+...+++.+.++.||+.|+++ +|++|+++|+||+++++.
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~l~g~~~slaDi~~~~~ 80 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGR-DFLVGDALTIADIALAAY 80 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccC-ccccCCCCCHHHHHHHHH
Confidence 57888999988754332 22211110 01111112223334588999999999999776 899999999999999999
Q ss_pred HHHHhhhhcccccccCchHHHHHHHHh
Q psy14324 160 LDYMNVMAKQDLVENTPTLKKLRDEVL 186 (203)
Q Consensus 160 l~~~~~~~~~~~~~~~p~l~~w~~~~~ 186 (203)
+.++.... .+ ..++|+|.+|+++++
T Consensus 81 ~~~~~~~~-~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 81 THVADEGG-FD-LADYPAIRAWLARIE 105 (105)
T ss_pred HHhccccC-CC-hHhCccHHHHHHhhC
Confidence 99886543 33 678999999999874
No 96
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.27 E-value=1.1e-11 Score=79.94 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=56.5
Q ss_pred hcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchH
Q psy14324 123 KETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTI 191 (203)
Q Consensus 123 ~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 191 (203)
.+++.+.++.+|++|+++ +|++|+++|+||+++++++.+.... ......+|+|++|++++.++|++
T Consensus 35 ~~~~~~~l~~le~~L~~~-~~l~G~~~t~aDi~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 35 IARAHRLLRLLEEHLAGR-DWLAGDRPTIADVAVYPYVALAPEG--GVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHccC-CccCCCCCCHHHHHHHHHHHHHhcc--CCChhhCcHHHHHHHHHHhCcCC
Confidence 478999999999999886 9999999999999999998764432 22357899999999999999974
No 97
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.25 E-value=3.6e-11 Score=80.64 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=56.5
Q ss_pred hcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcC
Q psy14324 123 KETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAI 188 (203)
Q Consensus 123 ~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 188 (203)
.+.+.+.++.+|++|+++ +|+.|+++|+||+++++.+.+.....+....+.+|+|.+|++||.++
T Consensus 60 ~~~~~~~l~~l~~~L~~~-~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 60 LANFRAALEPLRATLKGQ-PFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred HHHHHHHHHHHHHHHcCC-CccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 378899999999999885 99999999999999999999887754344568999999999999863
No 98
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.22 E-value=2.6e-11 Score=74.66 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=61.6
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
+++||+.+.||+|.+++.+|+..|++|+.++++-.. ..++...++..++|++..||..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 589999999999999999999999999999887552 2345556788999999999999999999999984
No 99
>KOG3028|consensus
Probab=99.20 E-value=1.9e-09 Score=80.59 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=113.6
Q ss_pred CCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHHHHh---cCCCCC-ChHHH
Q psy14324 11 VKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYLAKQ---CGLNGK-DAWED 85 (203)
Q Consensus 11 ~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL~~~---~~l~p~-~~~~~ 85 (203)
.++.|.++.+++...+-|-+++...... ..|.|++|+|++ +|..+++-..|..+|... |.+-+. ...+.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~------~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~ 89 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPW------RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQL 89 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCC------CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHH
Confidence 4577889999999999555544332211 368999999999 569999999999999883 333332 35677
Q ss_pred HHHHHHHhHHHHHHHHhhhhc-c-C-------------------------CChHhHHh-----------hhhhhhhcchh
Q psy14324 86 LQIDIAFETFNDFRAAVSSYH-Y-D-------------------------HHEESKKL-----------KWEPLSKETIP 127 (203)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~-~-------------------------~~~~~~~~-----------~~~~~~~~~l~ 127 (203)
++...++.+++.....+..+. + . .....+.. ..+........
T Consensus 90 a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~As 169 (313)
T KOG3028|consen 90 ADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDAS 169 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 777788887765332221111 0 0 00000000 01122225567
Q ss_pred hhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhh-ccc----ccccCchHHHHHHHHhc
Q psy14324 128 YYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMA-KQD----LVENTPTLKKLRDEVLA 187 (203)
Q Consensus 128 ~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~-~~~----~~~~~p~l~~w~~~~~~ 187 (203)
+++..|++.|+++ .|++|++||--|+.+++.+..+.... +.. -...+++|.++++++++
T Consensus 170 ka~~~LS~~Lgs~-kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 170 KALNLLSTLLGSK-KFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHhcCc-eEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 8899999999998 99999999999999999999844332 111 12349999999999886
No 100
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.14 E-value=2.5e-10 Score=69.00 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=53.8
Q ss_pred cEEEecC-------CCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHh
Q psy14324 4 YKLIYFP-------VKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 4 ~~Ly~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~ 74 (203)
++||.++ .||+|.++.++|+..|+||+.+.... ....|.|++|+|+++|..+.||..|++||.++
T Consensus 1 ~~L~~~~~~~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~n------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 1 MELHVWGGDWGLPSVDPECLAVLAYLKFAGAPLKVVPSNN------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CEEEEECCCCCCCcCCHHHHHHHHHHHcCCCCEEEEecCC------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 3566553 56999999999999999998874332 23468999999999999999999999999875
No 101
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.13 E-value=9.5e-11 Score=75.20 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=53.2
Q ss_pred hcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhccc-ccccCchHHHHHHHH
Q psy14324 123 KETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQD-LVENTPTLKKLRDEV 185 (203)
Q Consensus 123 ~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~-~~~~~p~l~~w~~~~ 185 (203)
.+++.+.++.||++|+++ +|++|+++|+||+++++.+.++....... ....+|++.+|++++
T Consensus 38 ~~~~~~~~~~l~~~L~~~-~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 38 REELAAALAALEKLLAGR-PYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHccC-CCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 478899999999999886 99999999999999999999988765211 357899999999875
No 102
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.12 E-value=1.3e-10 Score=73.21 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=52.0
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhh-cc----cccccCchHHHHHHHHh
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMA-KQ----DLVENTPTLKKLRDEVL 186 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~-~~----~~~~~~p~l~~w~~~~~ 186 (203)
+++.+.++.+|+.|+++ +|++|+++|+|||++++.+.++.... .. .....+|+|++|++++.
T Consensus 22 ~~~~~~l~~le~~L~~~-~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 22 SLAKKDLKALSDLLGDK-KFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHhCCC-CccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 77889999999999986 99999999999999999998876431 11 23578999999999974
No 103
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.10 E-value=3.1e-10 Score=68.63 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=60.3
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
+++||+.+.||+|.+++.+|...|++|+.++++... ...+.......++|.+..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 589999999999999999999999999999887653 2334445677899999999999999999999974
No 104
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.08 E-value=5.2e-10 Score=71.85 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=54.9
Q ss_pred HhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhh-cccccccCchHHHHHHHH
Q psy14324 112 ESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMA-KQDLVENTPTLKKLRDEV 185 (203)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~-~~~~~~~~p~l~~w~~~~ 185 (203)
+.......+....++.+.+..+|++|+++ +| +++|+|||++++.+.+..... +....+++|+|.+|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAKL-PL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhhC-CC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 33344444555589999999999999876 88 899999999999999887542 223358899999999985
No 105
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=99.04 E-value=5.1e-10 Score=76.07 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=53.1
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhc
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLA 187 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~ 187 (203)
+.|...++.+-+.+..+++|++|++||+||+++++.+..+....+...+..+|+|.+|++||.+
T Consensus 82 ~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 82 EWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHH
Confidence 5667777777677665558999999999999999999988877545357799999999999986
No 106
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.98 E-value=7.8e-10 Score=74.26 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=51.8
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhh----c-ccccccCchHHHHHHHHh
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMA----K-QDLVENTPTLKKLRDEVL 186 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~----~-~~~~~~~p~l~~w~~~~~ 186 (203)
+.+.+.++.|++.|+++ +||+|++||.+|+++++++..+.... . ......+|+|.+|++||.
T Consensus 60 ~~~~~~l~aLs~~Lg~~-~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 60 EEVDQCCQALSQRLGTQ-PYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHCCC-CCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 67789999999999997 99999999999999999998776431 0 123578999999999974
No 107
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.95 E-value=7.2e-09 Score=66.42 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHhHHHHHHHHhhhh------ccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHH
Q psy14324 81 DAWEDLQIDIAFETFNDFRAAVSSY------HYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGYLANGKLSWADI 154 (203)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~ 154 (203)
|..++++.+++..|+.+-+.++..- +..... ....+..+..+.+++...+.+|..+++||+| +.|+||.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~----~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~ 75 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARK----PPLSEAAQAAAQKLIAVAERLLADGGPNLFG-EWSIADA 75 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS------------HHHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCC----CCCCHHHHHHHHHHHHHHHHHhccCCCCccc-cchHHHH
Confidence 4578999999999988644333221 121111 1112222366677888899999886799999 5999999
Q ss_pred HHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHHHHHHh
Q psy14324 155 YFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 197 (203)
.+++++.++...+ .+--++++.|.++.-++|++++|+.-
T Consensus 76 dlA~ml~Rl~~~g----d~vP~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 76 DLALMLNRLVTYG----DPVPERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp HHHHHHHHHHTTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcC----CCCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 9999999998875 22234799999999999999999863
No 108
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.95 E-value=2.3e-09 Score=64.90 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=57.9
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICR 69 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~ 69 (203)
.++||+.+.||+|++++.+|+.+||+|+.+++.-.. .+++.+.++..++|++..||..+.+.....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 479999999999999999999999999999887643 4567778899999999999999887766544
No 109
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.89 E-value=4.5e-09 Score=71.53 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=52.8
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcc-----cccccCchHHHHHHHHhc
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQ-----DLVENTPTLKKLRDEVLA 187 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~-----~~~~~~p~l~~w~~~~~~ 187 (203)
+.+.+.++.|++.|+++ +||+|+++|.+|+.+++++..+....-. .....+|+|.+|++||.+
T Consensus 67 ~~a~~~l~~l~~~L~~~-~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 67 RDAKECLNLLSQRLGES-QFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHCCC-CcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 67788999999999997 9999999999999999998877542211 235789999999999985
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.87 E-value=6.6e-09 Score=62.76 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=56.0
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEe--ecHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQL--HQSAAICRYL 71 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l--~es~~I~~yL 71 (203)
+++||+.+.||+|++++.+|...|++|..++++... .+++.+.++...+|++.++|..+ .+...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 479999999999999999999999999998877542 24466678899999999988777 5555555554
No 111
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.85 E-value=6.1e-09 Score=64.22 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=50.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCeEeec
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGKQLHQ 63 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~~l~e 63 (203)
+++||+.+.||+|.+++-+|..+||+|+.++++-+. ..+....++...+|+++.++..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEec
Confidence 489999999999999999999999999999998653 2233344688999999998866553
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.82 E-value=1.4e-08 Score=60.94 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=58.5
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRY 70 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~y 70 (203)
+++|+.+.||+|++++.+|..++++|+.+++.... .+++.+.++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 78999999999999999999999999988887653 35566678899999999999999999887753
No 113
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.82 E-value=2.1e-08 Score=62.59 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=62.3
Q ss_pred ccEEEecCCCCCchHHHHHHHh-----CCCcceeeccCCCC--hhhhcCCC--CCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSY-----MEQDFEDYRFEREQ--WPEIKPKM--PFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~--~~~~~~~~--p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
.+++|+.+.||+|.+++-+|+. .|++|+.++++-.. .+++.... +...+|.+..||..+.+...|..++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4899999999999999999999 89999999988642 23333322 336899999999999999999999998
Q ss_pred hcCC
Q psy14324 74 QCGL 77 (203)
Q Consensus 74 ~~~l 77 (203)
.+|+
T Consensus 82 ~~~~ 85 (85)
T PRK11200 82 NLGL 85 (85)
T ss_pred hccC
Confidence 8763
No 114
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.79 E-value=1.9e-08 Score=61.18 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=57.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCC-CCceEEECCeEeecHHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFG-KVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~-~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
+++||+.+.||+|.+++-+|+.+|++|+.++++... ..++....... .+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 378999999999999999999999999999988642 23344444444 89999999999999988887643
No 115
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.77 E-value=1.7e-08 Score=60.75 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=52.4
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQS 64 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es 64 (203)
+++|+.+.||+|.+++.+|...|++|+.+.++... .+++.+.+|.+++|++.++|..+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 78999999999999999999999999999887642 34677788999999999988776653
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.74 E-value=3.8e-08 Score=60.49 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=59.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
+++|+.+.||+|.+++-+|+.+|++|+.++++... ..++.+......+|++..+|..+.+...+..+..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999988652 34566666788999999999999998888876554
No 117
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.8e-08 Score=59.38 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=55.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC---hhhhc-CCCCCCCCceEEECCeEeecHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ---WPEIK-PKMPFGKVPVLEVDGKQLHQSAAICRY 70 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~---~~~~~-~~~p~~~vP~l~~~g~~l~es~~I~~y 70 (203)
++++|+.+.||||.++.-+|..+|++|+.+.++... ..+.. ..++..+||++.+||..+.....+..+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999988765 22333 345899999999999877765444443
No 118
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.70 E-value=7.1e-08 Score=60.26 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=58.3
Q ss_pred cEEEecCCCCCchHHHHHHHhCC-----CcceeeccCCCC--hhhhcCCCC--CCCCceEEECCeEeecHHHHHHHHHHh
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYME-----QDFEDYRFEREQ--WPEIKPKMP--FGKVPVLEVDGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~g-----i~~~~~~~~~~~--~~~~~~~~p--~~~vP~l~~~g~~l~es~~I~~yL~~~ 74 (203)
+++|+.+.||+|.+++-+|+..+ ++|+.++++... ..++..... ...||++..||..+.++..|..++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 58999999999999999999984 667777776432 233333332 368999999999999999999999987
Q ss_pred cC
Q psy14324 75 CG 76 (203)
Q Consensus 75 ~~ 76 (203)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 75
No 119
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.61 E-value=9.6e-08 Score=58.24 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=50.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCC-CCCCCceEEE-CCeEeecH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKM-PFGKVPVLEV-DGKQLHQS 64 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~-p~~~vP~l~~-~g~~l~es 64 (203)
+++||+.+.||+|++++.+|...|++|+.++++-.. ...+...+ +...+|++.. +|..+.+.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 478999999999999999999999999988876542 23455565 8899999976 67776654
No 120
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.58 E-value=1.1e-07 Score=57.33 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=45.2
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhhcCCCCCCCCceEEECCe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEIKPKMPFGKVPVLEVDGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~g~ 59 (203)
++||+.+.||+|++++-+|+.+|++|+.++++-+. ..+.+...+...+|++..+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 58999999999999999999999999999988653 222223347779999999654
No 121
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.53 E-value=5.6e-08 Score=56.42 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=49.4
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l 61 (203)
+++|+.+.||+|.+++-+|+..|++|+.++++... .+++.+.....++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 58999999999999999999999999999998762 34455555788999999998764
No 122
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.47 E-value=7.2e-07 Score=57.18 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=57.7
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCCh-----hhhcCCCCCCCCceEEECCeEeecHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQW-----PEIKPKMPFGKVPVLEVDGKQLHQSAAICRYL 71 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~-----~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL 71 (203)
.+++|+-+.||+|.+++-+|...|++|+.++++.... ..+...+...++|.+..+|..+.+...+....
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 5899999999999999999999999999999986421 23445567889999999999999887777643
No 123
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.46 E-value=7.3e-07 Score=55.03 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=59.9
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCCCCh-----hhhcCCCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQW-----PEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~-----~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
+++|+.+.||+|.+++-+|...+++|+..+++..+. ..+.+.+....+|++..+|..+.++..|..+..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 789999999999999999999999999999887642 2344556778999999999999999999887654
No 124
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.38 E-value=1.9e-06 Score=53.39 Aligned_cols=70 Identities=9% Similarity=0.086 Sum_probs=58.1
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCc--ceeeccCCCChh-----hhcCCCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQD--FEDYRFEREQWP-----EIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~--~~~~~~~~~~~~-----~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
+++|+.+.||+|.+++-+|...+++ |+..+++..+.. .+.+......+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 888888875322 244456677899999999999999888887654
No 125
>PHA03050 glutaredoxin; Provisional
Probab=98.38 E-value=1.7e-06 Score=56.30 Aligned_cols=67 Identities=6% Similarity=-0.057 Sum_probs=56.4
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCC---cceeeccCCC-C----hhhhcCCCCCCCCceEEECCeEeecHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQ---DFEDYRFERE-Q----WPEIKPKMPFGKVPVLEVDGKQLHQSAAICR 69 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~-~----~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~ 69 (203)
.+++|..+.||||.+++-+|...|+ +|+.++++-. + ..++.+.+...+||.+..+|..+.+...+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 6899999999999999999999999 7888888752 1 2456666777899999999999988877666
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.22 E-value=5.9e-06 Score=52.76 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=54.3
Q ss_pred ccEEEec-----CCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHH
Q psy14324 3 TYKLIYF-----PVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYL 71 (203)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL 71 (203)
.+.+|.- +.||+|.+++-+|..+|++|+.+.+.-.. ..++...+...++|.+..+|..+.+...+....
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 4677854 88999999999999999999988875331 233444566779999999999998887777644
No 127
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.18 E-value=6.9e-06 Score=49.20 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCCCchHHHHHHHhCCCc---ceeeccCCCChhhhcCCCCCCCCceEEE-CCeEeecHHHHHHHH
Q psy14324 11 VKALAEPIRFLLSYMEQD---FEDYRFEREQWPEIKPKMPFGKVPVLEV-DGKQLHQSAAICRYL 71 (203)
Q Consensus 11 ~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~l~es~~I~~yL 71 (203)
.+|.|.++.++|+..+.| |+.+..+.. ..+|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 568899999999999999 777764422 2579999999999 999999999999998
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.14 E-value=1e-05 Score=50.94 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=54.7
Q ss_pred cEEEec-----CCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHH
Q psy14324 4 YKLIYF-----PVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYL 71 (203)
Q Consensus 4 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL 71 (203)
+++|.- +.||+|.+++-+|...|++|+.+++.-+. ..+..+.+...++|.+..+|..+.+...+....
T Consensus 10 vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 10 VVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred EEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 677754 68999999999999999999999987542 234445566779999999999999988887744
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.95 E-value=3.1e-05 Score=62.29 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=56.3
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCC-hhhh---------cCCCCCCCCceEEECCeEeecHHHHHH
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQ-WPEI---------KPKMPFGKVPVLEVDGKQLHQSAAICR 69 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~---------~~~~p~~~vP~l~~~g~~l~es~~I~~ 69 (203)
|.++++|+.+.||+|.++.-+|...||+|+.++++-.. ..++ ........||.+..||..+.+......
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 78899999999999999999999999999999988432 1121 223467789999999999988877765
No 130
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.2e-05 Score=44.31 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=50.7
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccCCC------------ChhhhcC--CCCCCCCceEEE-CCeEee
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFERE------------QWPEIKP--KMPFGKVPVLEV-DGKQLH 62 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~------------~~~~~~~--~~p~~~vP~l~~-~g~~l~ 62 (203)
|++.+||+...||-|....-.|+-.++.|+.+++.-. +.++|-+ .|.+-.+|+|.. ||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 8899999999999999999999999999999998742 3344433 466778999998 676665
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.85 E-value=6.6e-05 Score=51.48 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=56.1
Q ss_pred ccEEEecC------CCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCC----CCCCceEEECCeEeecHHHHHHH
Q psy14324 3 TYKLIYFP------VKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMP----FGKVPVLEVDGKQLHQSAAICRY 70 (203)
Q Consensus 3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p----~~~vP~l~~~g~~l~es~~I~~y 70 (203)
.++||..+ .+|+|.+++.+|+.++|+|+.++++.+. .+++.+... ...+|.+..+|..|.+...+.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 36899999 8999999999999999999999887652 334444322 47899999999999998888774
Q ss_pred HH
Q psy14324 71 LA 72 (203)
Q Consensus 71 L~ 72 (203)
-+
T Consensus 81 ~e 82 (147)
T cd03031 81 NE 82 (147)
T ss_pred HH
Confidence 33
No 132
>PRK10824 glutaredoxin-4; Provisional
Probab=97.55 E-value=0.00033 Score=45.96 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=53.7
Q ss_pred cEEEec-----CCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHH
Q psy14324 4 YKLIYF-----PVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYL 71 (203)
Q Consensus 4 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL 71 (203)
+.+|.- |.||||.++.-+|...|++|..++++-+. ...+...+...+||-+..+|..|.++..+....
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 566654 58999999999999999999988776542 233445567789999999999999987777643
No 133
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.45 E-value=0.00037 Score=41.00 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=42.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhC-----CCcceeeccCCCChhhhcCCCCCCCCceEEECCeEee
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYM-----EQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLH 62 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~ 62 (203)
++++|+.+.||+|.++.-+|+.. +++|..+++ .+.++.........+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~--~~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDA--AEFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEc--ccCHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999998765 455555544 44444444445567999999887654
No 134
>KOG1752|consensus
Probab=97.32 E-value=0.0018 Score=41.61 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=57.9
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCCh-----hhhcCCCCCCCCceEEECCeEeecHHHHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQW-----PEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAK 73 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~-----~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~ 73 (203)
.+.+|.=+.||+|.++.-+|...|+++..+++|-.+. ..+.+..-..++|.+..+|..+.++..+..+-..
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~ 90 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKS 90 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHc
Confidence 4678888999999999999999999999999997632 2233456667999999999999999988876443
No 135
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.28 E-value=0.00065 Score=45.61 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=45.8
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchH
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTI 191 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 191 (203)
++++..|..||.++... .. .++++|+-||.+|+.|+.+..+.+. .=-|+++.|+++|.+...+
T Consensus 62 ~~l~~~L~~Le~ll~~~-~~-~n~~LS~dDi~lFp~LR~Ltivkgi---~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 62 AELNADLEELEPLLASP-NA-VNGELSIDDIILFPILRSLTIVKGI---QWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHH-SCT-TB-TTSS--HHHHHHHHHHHHHCTCTTS------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhccc-cc-cCCCCCHHHHHHHHHHhhhhhccCC---cCCHHHHHHHHHHHHHcCC
Confidence 78888999999998753 44 4449999999999999999988633 3345799999999876554
No 136
>PRK10026 arsenate reductase; Provisional
Probab=97.26 E-value=0.0003 Score=47.84 Aligned_cols=35 Identities=6% Similarity=-0.013 Sum_probs=33.1
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
|+++++|+.|.|.-|++++-.|+.+|++|+++++.
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 88899999999999999999999999999998864
No 137
>KOG1147|consensus
Probab=97.17 E-value=0.00051 Score=55.80 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=79.4
Q ss_pred ECCeEeecHHHHHHHHHHhc---C-CCCCChHHHHHHHHHHhHHHHHHHHhhhhccCCChHhHHhhhhhhhhcchhhhHH
Q psy14324 56 VDGKQLHQSAAICRYLAKQC---G-LNGKDAWEDLQIDIAFETFNDFRAAVSSYHYDHHEESKKLKWEPLSKETIPYYQA 131 (203)
Q Consensus 56 ~~g~~l~es~~I~~yL~~~~---~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 131 (203)
.+|..+.++..+..|..+.. + +++.+ .++.+++.|+++... ... ..+...+.
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~-----------~~~------------~~~s~~~~ 98 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST-----------FSF------------DEISSSLS 98 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh-----------cch------------HHHHHHHH
Confidence 35666777777777765433 2 77777 899999999988644 000 44556777
Q ss_pred HHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhc-ccccccCchHHHHHHHHhcCchHHHHH
Q psy14324 132 NFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAK-QDLVENTPTLKKLRDEVLAIPTIKKWV 195 (203)
Q Consensus 132 ~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~~~~~~~ 195 (203)
.|...|.-. .||+|.++|+||+++|+.+..--...+ ......+.++.+|++-....+..++++
T Consensus 99 ~ld~~l~~~-t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 99 ELDKFLVLR-TFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred HHHhhhhHH-HHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 788888776 899999999999999999985322221 112346778999999555555555554
No 138
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.17 E-value=0.00043 Score=46.73 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=31.3
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 36 (203)
|+++|+.+.|++|++++-+|+.+||+|+.+.+.-
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 3899999999999999999999999999998753
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.16 E-value=0.00044 Score=45.27 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=30.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 36 (203)
++||+.+.|++|++++-+|+.+|++|+.+++.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998764
No 140
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.13 E-value=0.00052 Score=45.21 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=30.8
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
|+++|+.+.|+.|++++-+|+.+|++|+.+++.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 389999999999999999999999999999875
No 141
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.05 E-value=0.00068 Score=43.87 Aligned_cols=32 Identities=9% Similarity=-0.025 Sum_probs=30.2
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
+++|+.+.|++|++++-+|+.+|++|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999999875
No 142
>PTZ00062 glutaredoxin; Provisional
Probab=97.05 E-value=0.0023 Score=46.51 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=52.9
Q ss_pred ccEEEec-----CCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHH
Q psy14324 3 TYKLIYF-----PVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYL 71 (203)
Q Consensus 3 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL 71 (203)
.+.||.- |.||+|+++.-+|...|++|+..++.-+. ...+.+.+...++|.+..+|..+.+...+....
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 3566743 68999999999999999999988776432 233444566678999999999998887777633
No 143
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.96 E-value=0.0023 Score=42.62 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=48.6
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCch
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPT 190 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 190 (203)
+++...|+.++..+... .. .++++|+-|+.+|+.|+.+..+.+. .=-|+++.|+++|.+...
T Consensus 63 ~~l~~~L~~l~~ll~~~-~~-~n~~ls~DDi~lFp~LR~Lt~vkgi---~~P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 63 AALNALLEELDPLILSS-EA-VNGQLSTDDIILFPILRNLTLVKGL---VFPPKVKAYLERMSALTK 124 (128)
T ss_pred HHHHHHHHHHHHHHcCc-cc-cCCcCCHHHHHHHHHHhhhhhhcCC---CCCHHHHHHHHHHHHHhC
Confidence 67888888999998542 33 5568999999999999999887632 334579999999987644
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.83 E-value=0.0013 Score=44.47 Aligned_cols=34 Identities=6% Similarity=0.118 Sum_probs=31.4
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 36 (203)
|+++|+.+.|+.|++++-.|+.+||+|+++.+.-
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 3899999999999999999999999999998763
No 145
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.79 E-value=0.0014 Score=44.27 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=31.3
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 36 (203)
|+++|+.+.|+.|++++-.|+.+|++|+.+.+.-
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 3899999999999999999999999999998753
No 146
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.75 E-value=0.0016 Score=43.00 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=30.0
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
+++|+.+.|++|++++-+|+.+|++|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999998875
No 147
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.61 E-value=0.0023 Score=41.96 Aligned_cols=33 Identities=15% Similarity=-0.028 Sum_probs=30.5
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
.++||+.|.|+.|++++-.|+.+|++|+++.+.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 378999999999999999999999999998764
No 148
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.55 E-value=0.01 Score=37.36 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=49.9
Q ss_pred cEEEecCCCC------CchHHHHHHHhCCCcceeeccCCCC--hhhhcCCC----CCCCCceEEECCeEeecHHHHHH
Q psy14324 4 YKLIYFPVKA------LAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKM----PFGKVPVLEVDGKQLHQSAAICR 69 (203)
Q Consensus 4 ~~Ly~~~~s~------~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~----p~~~vP~l~~~g~~l~es~~I~~ 69 (203)
+++|....++ .|++++.+|+-+||+|+.+.++.++ ..+..... +...+|-+..+|..+.+.-.+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 5788877664 4568899999999999999998752 23333332 45789999999999988766555
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.50 E-value=0.003 Score=40.84 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=30.0
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
+++|+.|.|+.|++++-.|+.+|++|+++++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999998865
No 150
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0033 Score=41.47 Aligned_cols=33 Identities=6% Similarity=-0.073 Sum_probs=30.8
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
++++|+.|.|.-|++++-.|+.+||+|+++.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 589999999999999999999999999988754
No 151
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.36 E-value=0.0096 Score=36.24 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=41.3
Q ss_pred ccEEEecCCCCCchHHHHHHHh----CCCcceeeccCCCChhhhcCCCCCCCCceEEECCe
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSY----MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGK 59 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~ 59 (203)
++++|+.+.|++|..+.-.++. .+..+....++..+.++.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988888753 34445666666655555555556667999999775
No 152
>PRK10853 putative reductase; Provisional
Probab=96.33 E-value=0.0041 Score=41.15 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=30.0
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
+++|+.+.|.-|++++-.|+.+|++|+++.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999998754
No 153
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.24 E-value=0.0055 Score=37.59 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=40.7
Q ss_pred ccEEEecCCCCCchHHHHHHHhCC--CcceeeccCCCChhhhcCCCCCCCCceEEECC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYME--QDFEDYRFEREQWPEIKPKMPFGKVPVLEVDG 58 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~g--i~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g 58 (203)
+++||+-++|+.|..+.-.|.... .+++...+|..+.+++....- ..||+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc-CCCCEEEEcC
Confidence 479999999999999999998654 466777777766565554433 3799999976
No 154
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.17 E-value=0.0062 Score=40.74 Aligned_cols=33 Identities=18% Similarity=-0.052 Sum_probs=30.6
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
.+++|+.|.|.-|++++-.|+.+|++|+++.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 579999999999999999999999999998754
No 155
>PHA02125 thioredoxin-like protein
Probab=96.14 E-value=0.0088 Score=36.05 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=40.4
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
|+++|+.++|+.|.++.-.|+ ++.++...++.++.++......-..+|++..
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDEGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCCCHHHHHHcCCceeCeEEC
Confidence 378999999999999988886 4567777777666666666666678999984
No 156
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.08 E-value=0.023 Score=34.32 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=40.5
Q ss_pred cEEEecCCCCCchHH----HHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEee
Q psy14324 4 YKLIYFPVKALAEPI----RFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLH 62 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v----~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~ 62 (203)
+.+|. ++||.|..+ .-++++.|+.++++.++ +.++.. ..-...+|++..+|..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~a~-~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNEIL-EAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HcCCCcCCEEEECCEEEE
Confidence 66776 999999988 66888899988888887 222222 235668999999886554
No 157
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.61 E-value=0.014 Score=38.15 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=29.5
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
+++|+.+.|.-|++++-.|+.+|++|+++++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998754
No 158
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.52 E-value=0.017 Score=38.00 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=29.6
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
+++|+.+.|.-|++++-.|+.+|++|+++++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988754
No 159
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.51 E-value=0.018 Score=35.96 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=40.8
Q ss_pred ccEEEecCCCCCchHHHHHHHhC-----CCcceeeccCCCChhhhcCCCCCCCCceEEECCeEee
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYM-----EQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLH 62 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~ 62 (203)
.+.+|..+.|++|..+.-+++.. ++.++.+. ..+.++......-..+|++..||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd--~~~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMID--GALFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEE--hHhCHHHHHHcCCccCCEEEECCEEEE
Confidence 47899999999999888777544 45444444 334455555556668999999886554
No 160
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.1 Score=32.97 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=48.2
Q ss_pred ecCCCCCchHHHHHHHhCC-CcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 8 YFPVKALAEPIRFLLSYME-QDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 8 ~~~~s~~~~~v~~~L~~~g-i~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
.+|-|+||.++--+|..+| ++|..++|-.+. +..+.+.+-.-++|=|-.+|+.+.+|-.|.+...
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHH
Confidence 4688999999999999999 566666554431 2334445666789999999999999877766543
No 161
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.00 E-value=0.054 Score=32.67 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=38.7
Q ss_pred cEEEecCCCCCchHHHH----HHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeec
Q psy14324 4 YKLIYFPVKALAEPIRF----LLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQ 63 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~----~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~e 63 (203)
+++ ..+.||+|..+.- ++...|+.++.+.+ .+.++. ....-..+|++..||...+.
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 566 4666999985554 56677887877765 444445 55667889999999876554
No 162
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.51 E-value=0.16 Score=28.21 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=37.1
Q ss_pred cEEEecCCCCCchHHHHHHH-----hCCCcceeeccCCCCh-hhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLS-----YMEQDFEDYRFEREQW-PEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~ 56 (203)
+.+|+...|+.|++.+..+. ..++.+..+.++.... .......+...+|++..
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 46788889999999999998 4556665555554321 11123567889999988
No 163
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=93.20 E-value=0.61 Score=29.74 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=40.9
Q ss_pred CCccEEEecCCCCC------chHHHHHHHhCCCcceeeccCCCC--hhhhc---------CCCCCCCCceEEECCeEeec
Q psy14324 1 MPTYKLIYFPVKAL------AEPIRFLLSYMEQDFEDYRFEREQ--WPEIK---------PKMPFGKVPVLEVDGKQLHQ 63 (203)
Q Consensus 1 M~~~~Ly~~~~s~~------~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~---------~~~p~~~vP~l~~~g~~l~e 63 (203)
|+ +++|....++. .+++..+|+.++|+|+.+.+..++ ..... ..++....|-+..|+..+.+
T Consensus 1 m~-I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 1 MV-IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp -S-EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred CE-EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 66 88999887764 358999999999999999888752 11111 12344455778888888877
Q ss_pred HHHHHH
Q psy14324 64 SAAICR 69 (203)
Q Consensus 64 s~~I~~ 69 (203)
--.+-.
T Consensus 80 ye~f~e 85 (99)
T PF04908_consen 80 YEDFEE 85 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 164
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.62 E-value=0.64 Score=30.12 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=43.6
Q ss_pred CCCCchHHHHHHHhCCC---cceeeccCCCC-hhhhcC-C-CCCCCCceEEE-CCe-------------EeecHHHHHHH
Q psy14324 11 VKALAEPIRFLLSYMEQ---DFEDYRFEREQ-WPEIKP-K-MPFGKVPVLEV-DGK-------------QLHQSAAICRY 70 (203)
Q Consensus 11 ~s~~~~~v~~~L~~~gi---~~~~~~~~~~~-~~~~~~-~-~p~~~vP~l~~-~g~-------------~l~es~~I~~y 70 (203)
.||.|..+.-+|...-- ..+.+.|+... ...... + .....+|+|+. +|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 57888888877753321 23444444432 222332 1 24677899998 443 89999999999
Q ss_pred HHHhcCC
Q psy14324 71 LAKQCGL 77 (203)
Q Consensus 71 L~~~~~l 77 (203)
|.++||+
T Consensus 103 La~r~g~ 109 (112)
T PF11287_consen 103 LAERHGF 109 (112)
T ss_pred HHHHcCC
Confidence 9999974
No 165
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=91.77 E-value=0.46 Score=33.54 Aligned_cols=41 Identities=22% Similarity=0.085 Sum_probs=33.2
Q ss_pred chhhhHHHHHHHHhhc--CCcccCCc-chHHHHHHHHHHHHHhh
Q psy14324 125 TIPYYQANFEELAKNN--GGYLANGK-LSWADIYFVACLDYMNV 165 (203)
Q Consensus 125 ~l~~~l~~le~~l~~~--g~fl~G~~-~s~aD~~l~~~l~~~~~ 165 (203)
.-.+++..|++.|+.. +.|++|+. +|-+||.+++.+.-+..
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~ 155 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLV 155 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 4567788889999775 37788876 99999999999987653
No 166
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=89.94 E-value=1.4 Score=27.54 Aligned_cols=69 Identities=16% Similarity=0.335 Sum_probs=46.1
Q ss_pred cEEEecCCCCCchHHHHHH-----HhCCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe------ecHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLL-----SYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL------HQSAAICRY 70 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L-----~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l------~es~~I~~y 70 (203)
+..++.+.|+.|+...-.+ .+.+ ++.+..++..+.+++.+...-..+|++.. +|..+ .+...|..+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence 5677889999998877544 3333 56677777766666666666778999998 66433 244556666
Q ss_pred HHH
Q psy14324 71 LAK 73 (203)
Q Consensus 71 L~~ 73 (203)
|.+
T Consensus 100 i~~ 102 (103)
T PF00085_consen 100 IEK 102 (103)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.80 E-value=0.25 Score=32.15 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=22.9
Q ss_pred EecCCCCCchHHHHHHHhCCCcceeeccC
Q psy14324 7 IYFPVKALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 7 y~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
|+.+.|.-|++++-.|+.+|++|+++.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999998754
No 168
>KOG0911|consensus
Probab=87.95 E-value=1.8 Score=31.84 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=50.3
Q ss_pred ecCCCCCchHHHHHHHhCCCcceeeccCCCC--hhhhcCCCCCCCCceEEECCeEeecHHHHHHHHH
Q psy14324 8 YFPVKALAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 8 ~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
..|-|++++.+--+|+..|++|+..+|-.++ +...+..+---+.|=|-.+|..+.++-.|...+.
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhh
Confidence 3578999999999999999999888877653 2334455666788999999999888766665443
No 169
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=87.54 E-value=1.9 Score=28.07 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=40.5
Q ss_pred cEEEecCCCCCchHHHHHHHhCCC---cceeeccCCCChhhhcCCCCCCCCceEEE--CCeEee
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQ---DFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLH 62 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~ 62 (203)
+..|+.+.|+.|+.+.-.++...= ...+..+|.++.++..+...-..+|++.. +|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 456777899999988777744211 23566677666666666666778999998 776654
No 170
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=87.39 E-value=0.96 Score=29.50 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=35.4
Q ss_pred cEEE-ecCCCCCchHHHHHHHhCCCc---ceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLI-YFPVKALAEPIRFLLSYMEQD---FEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly-~~~~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
++++ +.++|++|+.++-+++...-. .+...++.++.++......-..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEE
Confidence 3344 568999999888877644322 2444455555566666666778999998
No 171
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=86.78 E-value=0.35 Score=31.83 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=13.9
Q ss_pred CCCCceEEE--CCeEeecHHHHHHHHHHhc
Q psy14324 48 FGKVPVLEV--DGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 48 ~~~vP~l~~--~g~~l~es~~I~~yL~~~~ 75 (203)
-..-|-|++ +|..++|+.||++|+..-|
T Consensus 33 d~~~~~L~~~~~gF~L~e~NAIvrYl~nDF 62 (122)
T PF09635_consen 33 DESGPLLKDKKSGFELFEPNAIVRYLANDF 62 (122)
T ss_dssp S--S--EEE-S--S----HHHHHHHHTT--
T ss_pred ccccceeeecCCceEEecccHHHHHHHhhc
Confidence 334588876 7899999999999999866
No 172
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=86.29 E-value=3.9 Score=27.07 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=35.3
Q ss_pred cEEEecCCCCCchHHHHHH----HhCCCcceeeccCCCCh---------hhhcCC----CCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLL----SYMEQDFEDYRFEREQW---------PEIKPK----MPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L----~~~gi~~~~~~~~~~~~---------~~~~~~----~p~~~vP~l~~--~g~~l 61 (203)
+.-|+.++||+|+.+.-.| +..++++-.++++..+. .++.+. .....+|++.. +|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 4567889999999865554 44456666666653221 122222 23556999998 77443
No 173
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.26 E-value=0.96 Score=37.95 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=43.4
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCC---cceeeccCCCChhhhcCCCCCCCCceEEECCeEeec
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQ---DFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQ 63 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~e 63 (203)
.+++|..+.||+|..+.-+++..-+ ..+...++-...+++........||.+..+|..+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~ 182 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQ 182 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEe
Confidence 4789999999999887766644333 234444455566777777778899999997755544
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.21 E-value=0.88 Score=38.16 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=43.6
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCc---ceeeccCCCChhhhcCCCCCCCCceEEECCeEeec
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQD---FEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQ 63 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~e 63 (203)
.+++|..+.||||..+.-+++..-+. .+...++-...++.........||.+..+|..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEe
Confidence 37899999999999877776554432 33444555566777777778899999998765554
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.09 E-value=2.3 Score=36.09 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=40.7
Q ss_pred ccEEEecCCCCCchHHHH----HHHhC-CCcceeeccCCCChhhhcCCCCCCCCceEEECCeEee
Q psy14324 3 TYKLIYFPVKALAEPIRF----LLSYM-EQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLH 62 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~----~L~~~-gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~ 62 (203)
.+++|..+.||+|..+.- ++.+. +|..+.+.+ ...++..+...-+.||.+..||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~--~~~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDV--SHFPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEEC--cccHHHHHhCCceecCEEEECCEEEE
Confidence 378899999999986555 34444 566555544 34566666667888999999886544
No 176
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=82.50 E-value=3.3 Score=25.88 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=36.2
Q ss_pred cEEEecCCCCCchHHHHHHHh----CCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY----MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+.+|+.+.|+.|....-.++. .+-.+....++.++.+++....--..+|++.. +|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 567778899999887766644 11124455555555555544434467898887 66554
No 177
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=81.98 E-value=4.1 Score=29.86 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=37.3
Q ss_pred cEEEecCCCCCchHHHHHHHhCCC---cceeeccCCCChhhhcCCCCCCCCceEEEC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQ---DFEDYRFEREQWPEIKPKMPFGKVPVLEVD 57 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~ 57 (203)
+++|+.++|++|..+..+++...- ......+|....++......-..+|++..+
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe
Confidence 567899999999988877764321 233344666565666665666679999983
No 178
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=81.08 E-value=2.4 Score=26.30 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=37.8
Q ss_pred cEEEecCCCCCchHHHHHHHhC----CCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYM----EQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+..|+.+.|+.|++..-.++.. +..+....++..+.+++.+...-..+|++.. +|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 4567788999998887666532 3345666666665555555444566998887 66543
No 179
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=80.94 E-value=6.8 Score=23.36 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=35.9
Q ss_pred cEEEecCCCCCchHHHHHHHh-----CCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY-----MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+..|+.+.|+.|+...-.+.. .++.+-.+ +..+.+++........+|++.. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKV--DVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE--ECCCChhHHHhcCcccccEEEEEECCE
Confidence 567888899999988877766 55554444 3334444544455567899887 564
No 180
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=78.32 E-value=5.5 Score=25.69 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=34.0
Q ss_pred cEEEecCCCCCchHHHHHH-----HhCCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeE
Q psy14324 4 YKLIYFPVKALAEPIRFLL-----SYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQ 60 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L-----~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~ 60 (203)
+..++.++|+.|+...-.+ .+.+.......++.+..+.......-..+|++.. +|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEE
Confidence 5667888999997655433 2223234445555554444544445578898886 6643
No 181
>PTZ00051 thioredoxin; Provisional
Probab=75.64 E-value=6.5 Score=24.36 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=34.9
Q ss_pred cEEEecCCCCCchHHHHHHHhC---CCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYM---EQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~---gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+..|+.+.|+.|+...-.++.. ...+.+..++.++...+.+...-..+|++.. +|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 4567788899998776555432 1123444555555455555555567898887 66443
No 182
>PRK09381 trxA thioredoxin; Provisional
Probab=74.60 E-value=11 Score=23.90 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=35.8
Q ss_pred cEEEecCCCCCchHHHHHHH----hCCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLS----YMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~----~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+..++.+.||.|+...-.++ ..+-.+.+..++.++.+.......-..+|++.. +|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 45667788999987754442 222235556666665555544445667999887 66544
No 183
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=74.17 E-value=8.1 Score=28.31 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=37.4
Q ss_pred cEEEec---CCCCCchHHHHHHHhC-----CCcceeeccCCCChhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYF---PVKALAEPIRFLLSYM-----EQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~---~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+.+|.. ++|+.|+.+.-.++.. ++.+..+.++.++.++.....--..+|++.. +|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence 567777 8899999877776444 2444455555545556666566778999988 553
No 184
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=72.26 E-value=9.3 Score=23.92 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=34.1
Q ss_pred cEEEecCCCCCchHHHHHHHhCCC----cceeeccCCCChhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQ----DFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi----~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+..|+.++|+.|+...-.++...- .+.+..++.++.++..+..--..+|++.. +|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 456778889988866555422221 24555566665555554445567899877 553
No 185
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=71.81 E-value=7.3 Score=25.55 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=37.9
Q ss_pred EEEecCCCCCchHHHHHHHhCCCc----ceeeccCCCChhhhcCCCCCCCCceEEE--CCeEee
Q psy14324 5 KLIYFPVKALAEPIRFLLSYMEQD----FEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLH 62 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~L~~~gi~----~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~ 62 (203)
.-|+.++|+.|+.+.-.++..--. ..+..+|.++.+++....--..+|++.. +|..+.
T Consensus 19 V~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 19 IRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 346778899898776666333222 3455667766666666555667999998 776543
No 186
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=69.40 E-value=6.2 Score=25.87 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=31.5
Q ss_pred cEEEecCCCCCchHHHHHHHh------CCCcceeeccCCCChhhhcCCCCCC-CCceEEE---CCeEee
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY------MEQDFEDYRFEREQWPEIKPKMPFG-KVPVLEV---DGKQLH 62 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~------~gi~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~---~g~~l~ 62 (203)
+.-|+.++|+.|+...-.+.. .+..|..+.++-.+.+.....+..| .+|++.. +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 455677889999877555543 2233444444432212112334444 4999887 455543
No 187
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=69.39 E-value=17 Score=22.33 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=36.3
Q ss_pred cEEEecCCCCCchHHHHHHHhCC----CcceeeccCCCChhhhcCCCCCCCCceEEE--CCeE
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYME----QDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQ 60 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~g----i~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~ 60 (203)
+..++.++|+.|+...-.++... -.+....++..+.+++.+...-..+|++.. +|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 45567788999987765554321 134556666666556655555667999987 6654
No 188
>KOG2824|consensus
Probab=69.03 E-value=11 Score=28.69 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=44.9
Q ss_pred CchHHHHHHHhCCCcceeeccCCCC--hhhhcC---C-CCCCCCceEEECCeEeecHHHHHHHH
Q psy14324 14 LAEPIRFLLSYMEQDFEDYRFEREQ--WPEIKP---K-MPFGKVPVLEVDGKQLHQSAAICRYL 71 (203)
Q Consensus 14 ~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~---~-~p~~~vP~l~~~g~~l~es~~I~~yL 71 (203)
.|..||.+|+-.+|.|+...|.++. ..++.. . .-.-.+|.+..+|..|.+...|.+--
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~Ln 212 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLN 212 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhh
Confidence 4679999999999999999999873 223322 2 34567998888999999988888743
No 189
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=67.46 E-value=13 Score=25.67 Aligned_cols=74 Identities=9% Similarity=0.166 Sum_probs=41.8
Q ss_pred cEEEecCCCCCchHHHHHHH-----hCCCcceeeccCCCChhhhcCCCC------CCCCceEEE--CCeEeecHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLS-----YMEQDFEDYRFEREQWPEIKPKMP------FGKVPVLEV--DGKQLHQSAAICRY 70 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~~~p------~~~vP~l~~--~g~~l~es~~I~~y 70 (203)
+..|+.++|+.|+...-.++ +.+-.+.+..++.++.++..+..- -.++|++.. +|+.+..-.- |
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G---~ 127 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPY---Y 127 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEec---c
Confidence 55677888998986664442 222235566666665544443222 234899987 7766553221 4
Q ss_pred HHHhcCCCCC
Q psy14324 71 LAKQCGLNGK 80 (203)
Q Consensus 71 L~~~~~l~p~ 80 (203)
..++-++.|.
T Consensus 128 ~~~~~~~~~~ 137 (152)
T cd02962 128 NDSKGRAVPF 137 (152)
T ss_pred ccCccccccc
Confidence 4444445554
No 190
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=67.06 E-value=8 Score=24.37 Aligned_cols=52 Identities=6% Similarity=-0.065 Sum_probs=31.6
Q ss_pred cEEEecCCCCCchHHHHHH--------HhCCCcceeeccCCCC----hhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLL--------SYMEQDFEDYRFEREQ----WPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L--------~~~gi~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~ 56 (203)
+..|+.++|+.|++..-.+ .+.+ .+....++..+ .+++.+...-..+|++..
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 5678889999998775332 2232 34555555433 344444445567898876
No 191
>PRK10996 thioredoxin 2; Provisional
Probab=66.11 E-value=22 Score=23.96 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=37.5
Q ss_pred cEEEecCCCCCchHHHHHHHh----CCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY----MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+..|+.++|+.|+...-.+.. .+-.+.+..++.++.+++.+..--..+|++.. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 456777889999865444432 23345566667766666665555678999887 66544
No 192
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=65.75 E-value=14 Score=23.87 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=35.4
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCc---ceeeccCCCChhhhcCCCCCCCCceEEE--CCeEeec
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQD---FEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLHQ 63 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~e 63 (203)
+..|+.+.|+.|+.+.-.++...-. ..+..++..+. ++.+..--..+|++.. +|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 4567788999998776665432211 23344555443 4444445567899988 7765543
No 193
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=63.23 E-value=16 Score=22.78 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=34.0
Q ss_pred cEEEecCCCCCchHHHHHHHh-----CCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY-----MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+..|+.++|+.|+...-.++. .+..+.+..++..+.+.+.+...-..+|++.. +|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC
Confidence 456778889999866544432 23344555555555555554445667888887 553
No 194
>PHA02278 thioredoxin-like protein
Probab=62.59 E-value=21 Score=22.79 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=33.2
Q ss_pred cEEEecCCCCCchHHHHHHHhC----C--CcceeeccCCCC--hhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYM----E--QDFEDYRFEREQ--WPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~----g--i~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+.-|+.++|+.|+...-.++.. + +++-.++++-.+ .++..+..--..+|++.. +|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 3446678888898766554332 1 334444444322 244444455567899988 77654
No 195
>KOG0190|consensus
Probab=61.94 E-value=25 Score=29.39 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=50.9
Q ss_pred cEEEecCCCCCchH-------HHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeE------eecHHHHH
Q psy14324 4 YKLIYFPVKALAEP-------IRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQ------LHQSAAIC 68 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~-------v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~------l~es~~I~ 68 (203)
+..|+.|+|+.|.+ .--.|.+.|-+.....||-....++.........|+|.+ +|.. .-+.-.|+
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv 125 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIV 125 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHH
Confidence 56788899988874 334455555577777777665455555566667899998 6653 34567899
Q ss_pred HHHHHhcC
Q psy14324 69 RYLAKQCG 76 (203)
Q Consensus 69 ~yL~~~~~ 76 (203)
.||-++.|
T Consensus 126 ~wl~kq~g 133 (493)
T KOG0190|consen 126 KWLKKQSG 133 (493)
T ss_pred HHHHhccC
Confidence 99999876
No 196
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=61.69 E-value=10 Score=24.60 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=21.2
Q ss_pred CceEEE-CCeEeecHHHHHHHHHHhc
Q psy14324 51 VPVLEV-DGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 51 vP~l~~-~g~~l~es~~I~~yL~~~~ 75 (203)
.|.+.. +|.++++|..|+++...++
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H 27 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRH 27 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcch
Confidence 466665 9999999999999998865
No 197
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=61.67 E-value=12 Score=24.45 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=40.3
Q ss_pred cEEEecCC--CCCchHHHHHHHhCCCcc----eeeccCCCChhhhcCCCCCCCCceEEE--CCeEeec
Q psy14324 4 YKLIYFPV--KALAEPIRFLLSYMEQDF----EDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLHQ 63 (203)
Q Consensus 4 ~~Ly~~~~--s~~~~~v~~~L~~~gi~~----~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~e 63 (203)
+.+|+.++ ||-|+.+.-+|+..--.| .+..++.++.++.....--..+|++.. +|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 45666664 999998887775544433 344566666666666666778999998 7876654
No 198
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=61.54 E-value=35 Score=20.82 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=32.5
Q ss_pred cEEEecCCCCCchHHHHHHHh----CCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY----MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+..++.+.|+.|+...-.++. .+-...+..++..+.+++.+..--..+|++.. +|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 445667788888866544432 22235555566555555444444457898887 554
No 199
>KOG1668|consensus
Probab=61.13 E-value=6.3 Score=29.15 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHhcCchHH
Q psy14324 127 PYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVLAIPTIK 192 (203)
Q Consensus 127 ~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 192 (203)
...+..++..|.++ +|..|.++|-+|+.++..+.. ......+++..+|+.++.+.-.+.
T Consensus 10 ~~glk~l~~sLA~k-s~~~g~~~s~edv~vf~al~~------ep~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEK-SYIEGYQLSKEDVVVFAALGV------EPQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcc-cCCCCCCcccccceeehhccc------CcchhhhhHHHHHHHHHHHHHHHH
Confidence 45678899999998 999999999999998877641 222345667788888777644443
No 200
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=60.80 E-value=14 Score=23.94 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHhHHHHHH-HHhhhhccCCChHhHHhhhhhhhhcchhhhHHHHHHHHhhcCCc
Q psy14324 65 AAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFR-AAVSSYHYDHHEESKKLKWEPLSKETIPYYQANFEELAKNNGGY 143 (203)
Q Consensus 65 ~~I~~yL~~~~~l~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~g~f 143 (203)
.+.+.||.+..+++-.+.....-...+.+.+.+.. ..+...+-.. ++.....+-... ........-||..|++-
T Consensus 9 ~~LI~yLte~L~lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qn-p~L~~~~R~~ii-rE~Daiv~DLeEVLa~V--- 83 (113)
T PF12290_consen 9 DALIEYLTENLSLFESSQSGDTGDETVEDVVEEQIASQIMAVCEQN-PELEFSQRFQII-READAIVYDLEEVLASV--- 83 (113)
T ss_pred HHHHHHHHHhHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHccC-CCCCHHHHHHHH-HHHHHHHHHHHHHHHHH---
Confidence 67899999998876643333444455566666533 3333333322 222212222223 56667788888888762
Q ss_pred ccCCcchHHHHHHHH
Q psy14324 144 LANGKLSWADIYFVA 158 (203)
Q Consensus 144 l~G~~~s~aD~~l~~ 158 (203)
.+..+|-.-+.+..
T Consensus 84 -~~~~aT~eQ~~Fi~ 97 (113)
T PF12290_consen 84 -WNQKATNEQIAFIE 97 (113)
T ss_pred -HcCCCCHHHHHHHH
Confidence 23456655554433
No 201
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=55.45 E-value=71 Score=23.77 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=33.8
Q ss_pred cEEEecCCCCCchHHHHHHHh-----CCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeE
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY-----MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQ 60 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~ 60 (203)
+..|+.++|+.|+...-.++. .| ...+..+|..+.++..+...-..+|++.. +|..
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~ 118 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKM 118 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEE
Confidence 456778889999866544432 22 23444455555555555445567898887 6654
No 202
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=55.21 E-value=9.2 Score=26.73 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHhcCCCCC
Q psy14324 63 QSAAICRYLAKQCGLNGK 80 (203)
Q Consensus 63 es~~I~~yL~~~~~l~p~ 80 (203)
|-.+|++||.+.+||.|.
T Consensus 55 er~avVkYLAd~~GLap~ 72 (167)
T PF09098_consen 55 ERRAVVKYLADTQGLAPS 72 (167)
T ss_dssp HHHHHHHHHHHHT---CG
T ss_pred HHHHHHHHHHHccCCCch
Confidence 558999999999998884
No 203
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=55.08 E-value=14 Score=23.19 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=33.0
Q ss_pred cEEEecCCCCCchHHHHHHHhC----CCcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYM----EQDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
+..|+.+.|+.|++..-.++.. +-...+..++..+.+++.+...-..+|++..
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 5567888899998765444322 2124455566666556555455667898887
No 204
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=54.86 E-value=21 Score=23.36 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=12.6
Q ss_pred cEEEecCCCCCchHHH
Q psy14324 4 YKLIYFPVKALAEPIR 19 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~ 19 (203)
+..|+.+.|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5667788899998765
No 205
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=53.99 E-value=15 Score=21.88 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=35.9
Q ss_pred ccEEEecCCCCCchHH----HHHH-HhCCCcceeeccCCCChhhhcCCCCCCCCceEE
Q psy14324 3 TYKLIYFPVKALAEPI----RFLL-SYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLE 55 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v----~~~L-~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 55 (203)
.++||-...+|.|++. +-+| ++.+-+|+...+|..+.|+.....----.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 3678888887888644 3334 445779999999998777766654444455554
No 206
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=53.32 E-value=35 Score=21.06 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=30.4
Q ss_pred cEEEecCCCCCchHHHHHH----HhCC--CcceeeccCCCC--hhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLL----SYME--QDFEDYRFEREQ--WPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L----~~~g--i~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+.+|+.++|+.|+...-.+ .... -.+....++... .+.+.....-..+|++.. +|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 5677888899998664222 2211 123333334333 444444444557898876 454
No 207
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=52.20 E-value=31 Score=20.86 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=30.8
Q ss_pred CcccCCcchHHHHHHHHHHHHHhhhhcccccccCchHHHHHHHHh
Q psy14324 142 GYLANGKLSWADIYFVACLDYMNVMAKQDLVENTPTLKKLRDEVL 186 (203)
Q Consensus 142 ~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~p~l~~w~~~~~ 186 (203)
+|+. .++ -|+..|+.+.++.........++--++..|++++.
T Consensus 35 ky~t--~l~-~DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 35 KYFT--DLG-YDVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred hhcc--hhh-HHHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 6763 344 49999999998886544555667788999999875
No 208
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=51.64 E-value=31 Score=24.43 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=34.2
Q ss_pred cEEEecCCCCCchHHHHHHHhCC---CcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEeec
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYME---QDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLHQ 63 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~g---i~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~e 63 (203)
+..|+.++|+.|+.+--.|...- -...+..++.+.. +.....+-..+|++.. +|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 34466688888875543332111 1234555555443 4444556678999998 7876653
No 209
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=51.62 E-value=35 Score=21.01 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=32.8
Q ss_pred cEEEecCCCCCchHHHHHH-----HhCC--CcceeeccCCCChhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLL-----SYME--QDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L-----~~~g--i~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+..|+.++|+.|+...-.+ ...+ -.+....++..+.++..+...-..+|++.. +|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 4567778888888654333 3333 235555666555444444444567898876 553
No 210
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=50.44 E-value=21 Score=22.56 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=34.1
Q ss_pred cEEEecCCCCCchHHHHHHHhCC------C----cceeeccCCCChhhhcCCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYME------Q----DFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~g------i----~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~ 59 (203)
+..|+.+.|+.|+...-.++..- . ...+..++....++.....--..+|++.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 45678889999987765553211 1 23444555555455555555567899886 554
No 211
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=49.86 E-value=29 Score=23.68 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=49.3
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcC---C-CCCCCCceEEECCeEeec---HHHHHHHHHHhc
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKP---K-MPFGKVPVLEVDGKQLHQ---SAAICRYLAKQC 75 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~---~-~p~~~vP~l~~~g~~l~e---s~~I~~yL~~~~ 75 (203)
+++.|..|.|+.|..-.-.++.+|.....+..+.- ...++ + ......=+.+++|..+-+ ..+|.+.|+++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~--~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF--LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH--HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 57899999999999999999999887776665432 11111 1 223445567778766554 367888888876
No 212
>PRK13947 shikimate kinase; Provisional
Probab=49.84 E-value=18 Score=25.03 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=28.4
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceee
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDY 32 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~ 32 (203)
|..+.|.|.++|+.+...+.+.+..|++|-..
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 77899999999999999999999999987443
No 213
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=49.46 E-value=41 Score=22.37 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=35.6
Q ss_pred EEEecCCCCCchHHHH-HH------HhCCCcceeeccCCCChhhhcC--------CCCCCCCceEEE---CCeEeecH
Q psy14324 5 KLIYFPVKALAEPIRF-LL------SYMEQDFEDYRFEREQWPEIKP--------KMPFGKVPVLEV---DGKQLHQS 64 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~-~L------~~~gi~~~~~~~~~~~~~~~~~--------~~p~~~vP~l~~---~g~~l~es 64 (203)
..++.+.|++|++.-- .+ ...+=.|..+.+|.++.++..+ .+-.+.+|+++. +|..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3466778888886632 22 2223357777777765443321 223557898887 67777654
No 214
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=48.95 E-value=73 Score=21.02 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=28.4
Q ss_pred CCCCCchHHHHHH----HhCCCcceeeccCCCCh-------hhhcCCCCCC-CCceEEE--CCeEeec
Q psy14324 10 PVKALAEPIRFLL----SYMEQDFEDYRFEREQW-------PEIKPKMPFG-KVPVLEV--DGKQLHQ 63 (203)
Q Consensus 10 ~~s~~~~~v~~~L----~~~gi~~~~~~~~~~~~-------~~~~~~~p~~-~vP~l~~--~g~~l~e 63 (203)
++|+.|+.+.-.+ ....-.+.+..++.++. .++....--. .+|++.. +|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 7889888654433 33332244555555432 2333222223 7999998 4554444
No 215
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=48.83 E-value=35 Score=21.79 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=26.9
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceeec
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDYR 33 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~ 33 (203)
+|.-.|...+..|...-++.+++++|||++...
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 355567777778889999999999999998865
No 216
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=48.53 E-value=45 Score=20.05 Aligned_cols=53 Identities=6% Similarity=0.052 Sum_probs=33.8
Q ss_pred cEEEecCCCCCchHHHHHHHh----C--CCcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY----M--EQDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~----~--gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
+.+|+.+.|+.|+...-.+.. . +-.+.+..++..+.+++.+...-..+|++..
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 567788889999876665532 2 3345555565555455555545567898876
No 217
>KOG3425|consensus
Probab=47.88 E-value=82 Score=20.99 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=40.3
Q ss_pred CCCCCchH----HHHHHHhCCCcceeeccCCCChhhhcC-CCCCC-------CCceEEE-C--CeEeecHHHHHHHHHH
Q psy14324 10 PVKALAEP----IRFLLSYMEQDFEDYRFEREQWPEIKP-KMPFG-------KVPVLEV-D--GKQLHQSAAICRYLAK 73 (203)
Q Consensus 10 ~~s~~~~~----v~~~L~~~gi~~~~~~~~~~~~~~~~~-~~p~~-------~vP~l~~-~--g~~l~es~~I~~yL~~ 73 (203)
++||.|.+ +.=+|++.+-...++.+.....+..+. -||+. -||+|.- + +..+.+...-...|.+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 57888874 456677788888888888765444333 23333 4777776 4 3556666555555544
No 218
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=46.36 E-value=67 Score=20.09 Aligned_cols=57 Identities=9% Similarity=-0.016 Sum_probs=30.9
Q ss_pred cEEEecCCCCCchHHHHHHHh----CC-CcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY----ME-QDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~----~g-i~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+..|+.++|+.|+...-.+.. .+ -...+..++.+ .++..+..--..+|++.. +|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 456777889999866544432 21 11233334443 233444344567788877 66543
No 219
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=46.35 E-value=12 Score=21.54 Aligned_cols=32 Identities=22% Similarity=-0.178 Sum_probs=20.5
Q ss_pred EEEecCCCCCchHHHHHHHhCCCcceeeccCC
Q psy14324 5 KLIYFPVKALAEPIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 36 (203)
++|......-+..++-+|+..||++...+...
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 67888877888999999999999998877554
No 220
>PTZ00102 disulphide isomerase; Provisional
Probab=46.17 E-value=79 Score=26.12 Aligned_cols=73 Identities=11% Similarity=0.161 Sum_probs=44.8
Q ss_pred cEEEecCCCCCchHHHHHH-------HhCCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe-----ecHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLL-------SYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL-----HQSAAICR 69 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L-------~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l-----~es~~I~~ 69 (203)
+..|+.++|+.|++..-.+ ...+-++.+..++.....+......-..+|++.. +|..+ .....|..
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l~~ 132 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGIVS 132 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCHHHHHH
Confidence 5678889999998664222 2223345666666555445544444456898876 44321 24567889
Q ss_pred HHHHhcC
Q psy14324 70 YLAKQCG 76 (203)
Q Consensus 70 yL~~~~~ 76 (203)
|+.+..+
T Consensus 133 ~l~~~~~ 139 (477)
T PTZ00102 133 WIKKLTG 139 (477)
T ss_pred HHHHhhC
Confidence 9988764
No 221
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=46.04 E-value=58 Score=22.05 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=30.9
Q ss_pred cEEEecCCCCCchHHHHHHHh----C--CCcceeeccCCCChhhhcCCCCCCCCceEEE---CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY----M--EQDFEDYRFEREQWPEIKPKMPFGKVPVLEV---DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~----~--gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~---~g~~l 61 (203)
+..|+.++|+.|+...-.+.. . ++.+-.+.++-....+.....--..+|++.. +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 455677788888766554432 2 2333333333323333444444557898876 35544
No 222
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=45.11 E-value=45 Score=17.18 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=20.4
Q ss_pred CCCCceEEECCeEeecHHHHHHHHH
Q psy14324 48 FGKVPVLEVDGKQLHQSAAICRYLA 72 (203)
Q Consensus 48 ~~~vP~l~~~g~~l~es~~I~~yL~ 72 (203)
.|.+|....++..+.....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4678888778888888888888875
No 223
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=43.76 E-value=22 Score=23.14 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=33.4
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCc----ceeeccCCCChhhhc-CCCCCCCCceEEE--CCe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQD----FEDYRFEREQWPEIK-PKMPFGKVPVLEV--DGK 59 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~----~~~~~~~~~~~~~~~-~~~p~~~vP~l~~--~g~ 59 (203)
+..|+.++|+.|+...-.++...-. ..+..+|.++.++.. +..--..+|++.. +|.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 5677889999998776666544322 334455555444443 2333356899887 553
No 224
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=43.37 E-value=25 Score=21.18 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=25.5
Q ss_pred chHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEEC
Q psy14324 15 AEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVD 57 (203)
Q Consensus 15 ~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~ 57 (203)
-..+|-+|...|+.|....-++...|++. .|..++-+.++|
T Consensus 24 E~~lr~~L~~~G~RyR~~~~~lpG~PDiv--~~~~k~aIFVdG 64 (75)
T PF03852_consen 24 ELALRRALHALGLRYRLNRKDLPGKPDIV--FPKYKIAIFVDG 64 (75)
T ss_dssp HHHHHHHHHHTT--EEES-TTSTT--SEE--EGGGTEEEEEE-
T ss_pred HHHHHHHHHhcCCEEEEccCcCCCCCCEE--ECCCCEEEEEec
Confidence 35789999999999999877776655544 455666666654
No 225
>PRK13949 shikimate kinase; Provisional
Probab=42.50 E-value=29 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=27.8
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcceee
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFEDY 32 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~ 32 (203)
|..+.|.|.++|+.+--.+.+.+..|++|-..
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 66789999999999999999999999876543
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.84 E-value=58 Score=25.38 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=51.2
Q ss_pred cEEEecCCCCCchHHHHHHH----hCCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeEeec------HHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLS----YMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLHQ------SAAICRYL 71 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~----~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~e------s~~I~~yL 71 (203)
+.+|+.|.|+.|....-.|+ +.+=.|....|+.+..+......--..+|++.. +|..|.+ -..|-++|
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~l 126 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFL 126 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHH
Confidence 55667778888876655553 334467777788887787777777788999887 7765543 34688888
Q ss_pred HHhcC
Q psy14324 72 AKQCG 76 (203)
Q Consensus 72 ~~~~~ 76 (203)
+...+
T Consensus 127 d~~~~ 131 (304)
T COG3118 127 DKVLP 131 (304)
T ss_pred HHhcC
Confidence 87654
No 227
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=40.40 E-value=97 Score=25.30 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=44.4
Q ss_pred cEEEecCCCCCchHHHHHHH-----h--CCCcceeeccCCCChhhhcCCCCCCCCceEEE--CCeE-------eecHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLS-----Y--MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQ-------LHQSAAI 67 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~-----~--~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~-------l~es~~I 67 (203)
+.+|+.++|+.|++..-.+. . .+-.+.+..++..+.++......-..+|++.. +|.. -.+...|
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 101 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGI 101 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHH
Confidence 56788899999987643222 2 23235566666655555544444556888876 4543 1245678
Q ss_pred HHHHHHhcC
Q psy14324 68 CRYLAKQCG 76 (203)
Q Consensus 68 ~~yL~~~~~ 76 (203)
..++.+..+
T Consensus 102 ~~~i~~~~~ 110 (462)
T TIGR01130 102 VKYMKKQSG 110 (462)
T ss_pred HHHHHHhcC
Confidence 888877653
No 228
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=40.40 E-value=59 Score=21.47 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=23.0
Q ss_pred cceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 28 DFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
.+.+..+|.++.+++....--..+|+|.. +|..+
T Consensus 65 ~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v 100 (120)
T cd03065 65 GIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVI 100 (120)
T ss_pred CCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEE
Confidence 34555566656666666666778999988 77643
No 229
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=39.30 E-value=34 Score=24.73 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=31.7
Q ss_pred EEEecCCCCCchHHHHHHHhCCC---cceeeccCCCChhhhcCCCCCCCCceEEE--CCeEeec
Q psy14324 5 KLIYFPVKALAEPIRFLLSYMEQ---DFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLHQ 63 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~e 63 (203)
..++.++|+.|+.+--.|...-- ...+..++... .....+-..+|++.. +|..+..
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPDKNLPTILVYRNGDIVKQ 167 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCCCCCCEEEEEECCEEEEE
Confidence 34566788888866544432221 12334443322 233456778999998 7765543
No 230
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=39.10 E-value=82 Score=19.15 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=31.8
Q ss_pred ccEEEecCCCCCchHHHHHH-----HhCCC-cceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 3 TYKLIYFPVKALAEPIRFLL-----SYMEQ-DFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L-----~~~gi-~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
.+.+|+.+.|+.|+...-.+ ...+- .+....++....++......-..+|++..
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEE
Confidence 36778889999998754433 22221 23444455545455544445567898865
No 231
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=38.18 E-value=69 Score=19.98 Aligned_cols=53 Identities=11% Similarity=0.059 Sum_probs=30.2
Q ss_pred cEEEecCCCCCchHHHHHHHhC----CCcceeeccCCCC--hhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYM----EQDFEDYRFEREQ--WPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~--~~~~~~~~p~~~vP~l~~ 56 (203)
+..|+.++|+.|+...-.+... +-...+..++.+. .+++.....-..+|++..
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 5677888899998654433222 2123334344433 444544445567898887
No 232
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=37.52 E-value=21 Score=20.34 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.3
Q ss_pred cEEEec----CCCCCchHHHHHHHh
Q psy14324 4 YKLIYF----PVKALAEPIRFLLSY 24 (203)
Q Consensus 4 ~~Ly~~----~~s~~~~~v~~~L~~ 24 (203)
++||.+ +.|.+|+||..+|+.
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 677766 467899999998863
No 233
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=37.39 E-value=45 Score=23.72 Aligned_cols=32 Identities=22% Similarity=0.046 Sum_probs=28.2
Q ss_pred CccEEEecCCCCCchHHHHHHHhCCCcceeec
Q psy14324 2 PTYKLIYFPVKALAEPIRFLLSYMEQDFEDYR 33 (203)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~ 33 (203)
..+.|.|+++++.+---+.+.+.+|++|-...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 35899999999999999999999999886554
No 234
>PF12728 HTH_17: Helix-turn-helix domain
Probab=37.04 E-value=69 Score=17.02 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCCCceEEECCeEeecHHHHHHHHHHh
Q psy14324 48 FGKVPVLEVDGKQLHQSAAICRYLAKQ 74 (203)
Q Consensus 48 ~~~vP~l~~~g~~l~es~~I~~yL~~~ 74 (203)
.|.+|....++.....-..|-+|+.++
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 24 QGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred cCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 568888888888999999999998764
No 235
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=35.48 E-value=69 Score=20.01 Aligned_cols=53 Identities=8% Similarity=0.139 Sum_probs=30.3
Q ss_pred cEEEecCCCCCchHHHHHHH-----h--CCCcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLS-----Y--MEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~-----~--~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
+..|+.++|+.|++..-.++ + .+..+....++....++..+..--..+|++..
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 45667788999986554442 2 13334444455544445544444456898877
No 236
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=35.36 E-value=47 Score=23.82 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=18.2
Q ss_pred ccEEEecCCCCCchHHHHHHHh
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSY 24 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~ 24 (203)
.+.+|..+.||+|++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3677888999999999888874
No 237
>PF13728 TraF: F plasmid transfer operon protein
Probab=33.59 E-value=1.3e+02 Score=22.24 Aligned_cols=33 Identities=3% Similarity=-0.040 Sum_probs=26.0
Q ss_pred cEEEecCCCCCch----HHHHHHHhCCCcceeeccCC
Q psy14324 4 YKLIYFPVKALAE----PIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 4 ~~Ly~~~~s~~~~----~v~~~L~~~gi~~~~~~~~~ 36 (203)
+.+++.+.|++|+ .++.+....|++...+.+|-
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG 160 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDG 160 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 5677778999997 56777788899887777773
No 238
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=33.46 E-value=84 Score=19.22 Aligned_cols=52 Identities=6% Similarity=0.088 Sum_probs=28.8
Q ss_pred cEEEecCCCCCchHHHHHHHhC-----C-CcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYM-----E-QDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~-----g-i~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
+.+|+.+.|+.|+...-.+... + ..+.+..++....+ ......-..+|++..
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-VPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-hhhhccCCCCCEEEE
Confidence 5678889999998765544322 2 12444445543322 222112268898887
No 239
>KOG0910|consensus
Probab=33.45 E-value=86 Score=21.72 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=40.0
Q ss_pred cEEEecCCCCCchHHHHHHHhCCC----cceeeccCCCChhhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQ----DFEDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi----~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+.=|+.++|+.|+.+.=.|++.-- .+.+..++.++..++....--.-+|++.. ||...
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 345677788888877666655443 34566667777777776666778999988 77665
No 240
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.26 E-value=40 Score=20.34 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.7
Q ss_pred CCCchHHHHHHHhCCCcceeeccC
Q psy14324 12 KALAEPIRFLLSYMEQDFEDYRFE 35 (203)
Q Consensus 12 s~~~~~v~~~L~~~gi~~~~~~~~ 35 (203)
-+|++|+.-.++..|++|+..+-.
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCC
Confidence 478899999999999999988643
No 241
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=33.24 E-value=1.1e+02 Score=18.18 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHhhcCCcccCCcchHHHH
Q psy14324 126 IPYYQANFEELAKNNGGYLANGKLSWADI 154 (203)
Q Consensus 126 l~~~l~~le~~l~~~g~fl~G~~~s~aD~ 154 (203)
...+...+.+++..+ +| -||+||+
T Consensus 45 ye~v~~al~~~i~~~-kf----PPsiaei 68 (71)
T PF11417_consen 45 YEIVMKALKKHIATN-KF----PPSIAEI 68 (71)
T ss_dssp HHHHHHHHHHHHHH--SS-------GGGG
T ss_pred HHHHHHHHHHHHHhC-CC----CcCHHHH
Confidence 344555666677676 65 5777765
No 242
>PHA03075 glutaredoxin-like protein; Provisional
Probab=33.11 E-value=42 Score=22.11 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=45.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
.+.|+|=|.|+-|..+.-+|....=+|+...|+.-+ +. .-.|++=+|..++. +.=-..+..|+...+
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS---fF--sK~g~v~~lg~d~~-y~lInn~~~~lgne~ 70 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNILS---FF--SKDGQVKVLGMDKG-YTLINNFFKHLGNEY 70 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee---ee--ccCCceEEEecccc-eehHHHHHHhhcccE
Confidence 588999999999999999999888899999887643 12 22345555555321 111245566665544
No 243
>KOG0907|consensus
Probab=32.48 E-value=76 Score=20.42 Aligned_cols=57 Identities=9% Similarity=0.194 Sum_probs=35.4
Q ss_pred EEecCCCCCchHHHHHHHhCCCcc---eeeccCCCChhhhcCCCCCCCCceEEE--CCeEee
Q psy14324 6 LIYFPVKALAEPIRFLLSYMEQDF---EDYRFEREQWPEIKPKMPFGKVPVLEV--DGKQLH 62 (203)
Q Consensus 6 Ly~~~~s~~~~~v~~~L~~~gi~~---~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~ 62 (203)
-|+.++|+.|..+.=.+....-.| .+..+|.++..+..+..--..+|++.. +|..+.
T Consensus 27 dF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 27 DFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred EEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE
Confidence 356678888887766665554444 344455555555555555567899987 665444
No 244
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=32.32 E-value=65 Score=19.78 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=33.3
Q ss_pred ccEEEecCCCCCchHHHHHHH----hCC--CcceeeccCCCC-hhhhcCCCCCCCCceEEE
Q psy14324 3 TYKLIYFPVKALAEPIRFLLS----YME--QDFEDYRFEREQ-WPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~----~~g--i~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~ 56 (203)
.+..|+.+.|+.|+...-.+. ... -.+....++... .+++.....-..+|++..
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 356778889998875544332 222 235555666655 555555555667898886
No 245
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=32.07 E-value=48 Score=20.59 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=35.1
Q ss_pred cEEEecCCCCCchHH----HHHHH-hCCCcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPI----RFLLS-YMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v----~~~L~-~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
++||-...+|.|++. +-.|+ +.+=.|+...+|..+.|+.....----.|+|+-
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSK 63 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhh
Confidence 678888888888754 33333 444469999999987776666544444555543
No 246
>PRK08118 topology modulation protein; Reviewed
Probab=31.78 E-value=53 Score=22.98 Aligned_cols=31 Identities=16% Similarity=-0.046 Sum_probs=27.5
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCccee
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDFED 31 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~ 31 (203)
|..+.+.|.++|+.+-.++.+.+..|+++-.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 7788999999999999999999999998543
No 247
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=31.27 E-value=1.1e+02 Score=18.71 Aligned_cols=52 Identities=8% Similarity=0.028 Sum_probs=29.3
Q ss_pred cEEEecCCCCCchHHHHHHH-----hCCCcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLS-----YMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
+.+++.+.|+.|+...-.+. +.+ .+.+..++.++.++..+..--..+|++..
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 45667788888886543332 222 24445555555454444333456898876
No 248
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=31.21 E-value=90 Score=19.52 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=29.3
Q ss_pred cEEEecCCCCCchHHHHHHH-----hCCCcceeeccCCC-ChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPIRFLLS-----YMEQDFEDYRFERE-QWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~ 56 (203)
+..|+.++|+.|+...-.++ +.++. +..++.. +.++..+..--..+|++..
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~--~~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIR--HLAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCc--eEEEECCCCCHHHHHhcCCeecCEEEE
Confidence 45677788898887765553 33433 3334443 3344444344456898876
No 249
>PRK09301 circadian clock protein KaiB; Provisional
Probab=30.97 E-value=53 Score=21.14 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=36.2
Q ss_pred cEEEecCCCCCchHH----HHHHH-hCCCcceeeccCCCChhhhcCCCCCCCCceEEE
Q psy14324 4 YKLIYFPVKALAEPI----RFLLS-YMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEV 56 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v----~~~L~-~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (203)
++||-...+|.+++. +-+|+ +.+=.|+...+|..+.|+.....----.|+|+-
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAK 66 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhh
Confidence 788888888888754 33333 445569999999987777666554445566554
No 250
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.58 E-value=91 Score=23.04 Aligned_cols=60 Identities=13% Similarity=-0.045 Sum_probs=40.1
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCcceeeccCCCChhhhcCCCCCCCCceEEECCeEee
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQDFEDYRFEREQWPEIKPKMPFGKVPVLEVDGKQLH 62 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~ 62 (203)
++++|.+..|..|-...-.|+.+|+-=....++....+...-.+---.+|.+..||+.+.
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~ 71 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVY 71 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEE
Confidence 378899999999999999999999854444444332221111233446899988886554
No 251
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=30.00 E-value=57 Score=23.66 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=24.9
Q ss_pred CccEEEecCCCCCch----HHHHHHHhCCCcceeeccCC
Q psy14324 2 PTYKLIYFPVKALAE----PIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 2 ~~~~Ly~~~~s~~~~----~v~~~L~~~gi~~~~~~~~~ 36 (203)
|.+.+|+...||||. ++.-++...+++.+.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 578899999999996 44555566666666666554
No 252
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=29.76 E-value=40 Score=23.76 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=26.6
Q ss_pred ccEEEecCCCCCch----HHHHHHHhC-CCcceeeccCCCC
Q psy14324 3 TYKLIYFPVKALAE----PIRFLLSYM-EQDFEDYRFEREQ 38 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~----~v~~~L~~~-gi~~~~~~~~~~~ 38 (203)
++++|....||||. +++-+++.. ++.++..++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 47889999999996 445555555 8888888877653
No 253
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=29.70 E-value=55 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=18.1
Q ss_pred CCeEeecHHHHHHHHHHhcC
Q psy14324 57 DGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 57 ~g~~l~es~~I~~yL~~~~~ 76 (203)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45799999999999999997
No 254
>COG3150 Predicted esterase [General function prediction only]
Probab=29.69 E-value=59 Score=23.20 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=26.5
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCcceeeccCC
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 36 (203)
+-|+||+.||.+.+..++++..+-.+..+....
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~ 35 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYST 35 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeeec
Confidence 457899999999999999999887666655443
No 255
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=29.29 E-value=98 Score=18.20 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=22.3
Q ss_pred CCCCCceEEECCeEeecHHHHHHHHHHhcC
Q psy14324 47 PFGKVPVLEVDGKQLHQSAAICRYLAKQCG 76 (203)
Q Consensus 47 p~~~vP~l~~~g~~l~es~~I~~yL~~~~~ 76 (203)
-..+-|++.-+| ..+|-.+|.+||.+..+
T Consensus 12 ~lM~dPVi~~~G-~tyer~~I~~~l~~~~~ 40 (73)
T PF04564_consen 12 ELMRDPVILPSG-HTYERSAIERWLEQNGG 40 (73)
T ss_dssp SB-SSEEEETTS-EEEEHHHHHHHHCTTSS
T ss_pred cHhhCceeCCcC-CEEcHHHHHHHHHcCCC
Confidence 345668887777 88999999999999443
No 256
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=29.26 E-value=1.9e+02 Score=22.09 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHhhcC-CcccCCcchHHHH-HHHHHHHHHhhhh---cccccccCch-HHHHHHHHhcCchHHHHHHhCCC
Q psy14324 127 PYYQANFEELAKNNG-GYLANGKLSWADI-YFVACLDYMNVMA---KQDLVENTPT-LKKLRDEVLAIPTIKKWVEKRPQ 200 (203)
Q Consensus 127 ~~~l~~le~~l~~~g-~fl~G~~~s~aD~-~l~~~l~~~~~~~---~~~~~~~~p~-l~~w~~~~~~~~~~~~~~~~~~~ 200 (203)
.+.=...++.+.+.| +|+.|--+-..-+ .+..-+..+...+ ..+++..|+. +..|.++ +|.|...+.+.-.
T Consensus 55 ~~lk~~A~r~~~~~G~rFlgG~aVP~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~---~pew~~~Ir~~~~ 131 (257)
T PF11348_consen 55 SKLKKRAERLCLKVGVRFLGGYAVPEDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDR---HPEWADIIRRAAP 131 (257)
T ss_pred HHHHHHHHHHHHHcCCcccceeEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ChHHHHHHHhcCC
Confidence 344445566665555 7766532222222 1222333333222 1345667775 6888887 4888888776544
No 257
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=28.45 E-value=1.5e+02 Score=18.75 Aligned_cols=54 Identities=11% Similarity=0.237 Sum_probs=30.4
Q ss_pred ccEEEecCCCCCchHHHHHHH-----hCCCcceeeccCCCC-hhhhc-CCCCCCCCceEEE
Q psy14324 3 TYKLIYFPVKALAEPIRFLLS-----YMEQDFEDYRFEREQ-WPEIK-PKMPFGKVPVLEV 56 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~-~~~~~-~~~p~~~vP~l~~ 56 (203)
-+..|+.+.|+.|++..-.+. +.+-.+....++.+. ...+. +...-..+|++..
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 366788899999986654442 233234444444443 22222 2245567898875
No 258
>PRK00625 shikimate kinase; Provisional
Probab=27.52 E-value=60 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=25.0
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCccee
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFED 31 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~ 31 (203)
+.|.|+|+|+.+-..+.+.+..|++|-.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999987733
No 259
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=27.21 E-value=1.2e+02 Score=17.09 Aligned_cols=31 Identities=6% Similarity=-0.080 Sum_probs=20.6
Q ss_pred hhHHHHHHHHhhcCCcccCCcc-hHHHHHHHHH
Q psy14324 128 YYQANFEELAKNNGGYLANGKL-SWADIYFVAC 159 (203)
Q Consensus 128 ~~l~~le~~l~~~g~fl~G~~~-s~aD~~l~~~ 159 (203)
.+.+.|.+.+..+ .|-.|+.+ |.++++----
T Consensus 4 ~i~~~l~~~I~~g-~~~~g~~lps~~~la~~~~ 35 (64)
T PF00392_consen 4 QIYDQLRQAILSG-RLPPGDRLPSERELAERYG 35 (64)
T ss_dssp HHHHHHHHHHHTT-SS-TTSBE--HHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCCCCEeCCHHHHHHHhc
Confidence 4456677777774 89999988 9998865433
No 260
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.87 E-value=89 Score=18.33 Aligned_cols=32 Identities=25% Similarity=0.068 Sum_probs=26.8
Q ss_pred EEEecCCCCCchHHHHHHHhCCCcceeeccCC
Q psy14324 5 KLIYFPVKALAEPIRFLLSYMEQDFEDYRFER 36 (203)
Q Consensus 5 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 36 (203)
-+..|+....+.+..-.|...|++++.++++.
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 45667777889999999999999999988764
No 261
>PF10990 DUF2809: Protein of unknown function (DUF2809); InterPro: IPR021257 Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.
Probab=26.47 E-value=48 Score=20.75 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.9
Q ss_pred CCcccCCcchHHHHHHHHH
Q psy14324 141 GGYLANGKLSWADIYFVAC 159 (203)
Q Consensus 141 g~fl~G~~~s~aD~~l~~~ 159 (203)
|..+.|..++..|+..+..
T Consensus 70 g~lvLG~~F~w~Dll~Y~i 88 (91)
T PF10990_consen 70 GRLVLGSTFDWWDLLAYAI 88 (91)
T ss_pred hHhhcCCCCCHHHHHHHHH
Confidence 4678999999999988753
No 262
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=26.23 E-value=1.7e+02 Score=18.24 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=31.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCC---CcceeeccCCCCh---hhhcCCCCCCCCceEEE--CCeEe
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYME---QDFEDYRFEREQW---PEIKPKMPFGKVPVLEV--DGKQL 61 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~g---i~~~~~~~~~~~~---~~~~~~~p~~~vP~l~~--~g~~l 61 (203)
+..|+.++|+.|+...-.++... -...+..++.++. .++.+...-..+|++.. +|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 44566788888886655443211 1223444444432 24444444556898887 67544
No 263
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=25.97 E-value=67 Score=23.96 Aligned_cols=21 Identities=0% Similarity=-0.168 Sum_probs=17.3
Q ss_pred cEEEecCCCCCchHHHHHHHh
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY 24 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~ 24 (203)
+..|.-+.||||++..--+..
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 677888999999998777654
No 264
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=25.66 E-value=77 Score=20.96 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=26.9
Q ss_pred CCCCCchHHH----HHHHhCCCcceeeccCCCChhhhcC-CCC--------CCCCceEEE--CCeEeecHH
Q psy14324 10 PVKALAEPIR----FLLSYMEQDFEDYRFEREQWPEIKP-KMP--------FGKVPVLEV--DGKQLHQSA 65 (203)
Q Consensus 10 ~~s~~~~~v~----~~L~~~gi~~~~~~~~~~~~~~~~~-~~p--------~~~vP~l~~--~g~~l~es~ 65 (203)
++||.|.++. -++....-...++.+...+.++.++ .|| ...||+|.- ++..|.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 5677777555 3444433345555555554443332 123 345899987 455666654
No 265
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.37 E-value=1.2e+02 Score=22.66 Aligned_cols=24 Identities=8% Similarity=-0.111 Sum_probs=17.0
Q ss_pred ccEEEecCCCCCch----HHHHHHHhCC
Q psy14324 3 TYKLIYFPVKALAE----PIRFLLSYME 26 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~----~v~~~L~~~g 26 (203)
++.+|.-+.||+|. |..-++...+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 47788888999996 5555555555
No 266
>PRK15371 effector protein YopJ; Provisional
Probab=25.18 E-value=1.3e+02 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=36.9
Q ss_pred hhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhh
Q psy14324 121 LSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMA 167 (203)
Q Consensus 121 ~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~ 167 (203)
...++|...++.||..++++ .|+ -..++..|+-..+.+.......
T Consensus 23 ~~~~~L~~~i~~le~~~~~G-~~~-~~~~~~~Di~~lp~lv~~~N~r 67 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADG-SWI-HKNYARTDLEVMPALVAQANNK 67 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcC-CCC-CchhHHhhHHhhHHHHHHHhcc
Confidence 44578999999999999885 887 4568999999999998777554
No 267
>PRK06217 hypothetical protein; Validated
Probab=25.17 E-value=72 Score=22.49 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=25.8
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcc
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDF 29 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~ 29 (203)
|-.+.+.|.++|+.+-..+.+.+..|+++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 55688999999999999999999999875
No 268
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=25.13 E-value=73 Score=18.93 Aligned_cols=21 Identities=10% Similarity=-0.066 Sum_probs=16.5
Q ss_pred cEEEecCCCCCchHHHHHHHh
Q psy14324 4 YKLIYFPVKALAEPIRFLLSY 24 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~ 24 (203)
+.+|..+.||+|....-.+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~ 21 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEK 21 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHH
Confidence 467888999999877776654
No 269
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=25.05 E-value=40 Score=21.30 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=13.9
Q ss_pred ccEEEecCCCCCchHHHHHHH
Q psy14324 3 TYKLIYFPVKALAEPIRFLLS 23 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~ 23 (203)
.+.+|+.+.||+|++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 356778899999997755554
No 270
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.97 E-value=2.9e+02 Score=22.33 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=70.6
Q ss_pred CceEEECCeEeecHHHHHHHHHHhcC--CCCCChHHHHHHHHHHhHHHH---------HHHHhhhhccCCChHhHHhhhh
Q psy14324 51 VPVLEVDGKQLHQSAAICRYLAKQCG--LNGKDAWEDLQIDIAFETFND---------FRAAVSSYHYDHHEESKKLKWE 119 (203)
Q Consensus 51 vP~l~~~g~~l~es~~I~~yL~~~~~--l~p~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 119 (203)
.+-+.+.++.+.|+.+|+.-|...-. .-|-+..++.++..|+.-+.. ++..+...+..... .
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G-------~ 170 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVG-------E 170 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcC-------C
Confidence 34444556899999999998877543 455577888888877776443 11122222111100 0
Q ss_pred hhhhcchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHhhhhccccc-ccC-chHHHHHHHHhc
Q psy14324 120 PLSKETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACLDYMNVMAKQDLV-ENT-PTLKKLRDEVLA 187 (203)
Q Consensus 120 ~~~~~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~-~~~-p~l~~w~~~~~~ 187 (203)
+.-.+++...++.+|+...+. .|+..+.-.-.|.+..-.++.....- .... ... +...++.+|...
T Consensus 171 ~~d~~~i~~~l~~~e~~Y~Gd-GWY~DG~~~~~DYYns~aih~y~l~~-~~~~~~~~~~~~~~~~~Ra~~ 238 (361)
T PF10022_consen 171 EYDEERIDYDLERIEEWYLGD-GWYSDGPEFQFDYYNSWAIHPYLLLY-ARLMGDEDPERAARYRQRAQR 238 (361)
T ss_pred CCcHHHHHHHHHHHHHHhccC-CccccCCccCCcchHHHHHHHHHHHH-HHHhcccCHHHHHHHHHHHHH
Confidence 111267778888899887776 66665445566776643333222221 1111 111 146666666654
No 271
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=23.14 E-value=92 Score=21.51 Aligned_cols=30 Identities=13% Similarity=-0.113 Sum_probs=25.7
Q ss_pred CccEEEecCCCCCchHHHHHHHhCCCccee
Q psy14324 2 PTYKLIYFPVKALAEPIRFLLSYMEQDFED 31 (203)
Q Consensus 2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~ 31 (203)
..+.|.|.++|+.+...+.+.+..|++|-.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 357788999999999999999999998744
No 272
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=22.63 E-value=97 Score=23.41 Aligned_cols=20 Identities=5% Similarity=-0.145 Sum_probs=16.1
Q ss_pred cEEEecCCCCCchHHHHHHH
Q psy14324 4 YKLIYFPVKALAEPIRFLLS 23 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~ 23 (203)
+..|.-+.||||++..-.+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56778899999999877654
No 273
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=22.14 E-value=1.4e+02 Score=15.64 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=12.5
Q ss_pred HHHHHhcCchHHHHHHh
Q psy14324 181 LRDEVLAIPTIKKWVEK 197 (203)
Q Consensus 181 w~~~~~~~~~~~~~~~~ 197 (203)
=.+-+..+|+|++.+++
T Consensus 12 rReiLsRRPSYRKIlnd 28 (41)
T PF02173_consen 12 RREILSRRPSYRKILND 28 (41)
T ss_dssp HHHHHTTSTHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHH
Confidence 35567778998888775
No 274
>PRK14528 adenylate kinase; Provisional
Probab=21.87 E-value=96 Score=22.04 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=25.8
Q ss_pred CCccEEEecCCCCCchHHHHHHHhCCCcc
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSYMEQDF 29 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~ 29 (203)
|..+.+.|-|+|+.+..++.+.+..|+++
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 67788999999999999999998888765
No 275
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=21.38 E-value=63 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.2
Q ss_pred cCchHHHHHHHHhcCchHH
Q psy14324 174 NTPTLKKLRDEVLAIPTIK 192 (203)
Q Consensus 174 ~~p~l~~w~~~~~~~~~~~ 192 (203)
....|++|++|+.++|.+.
T Consensus 110 rr~~LqrfL~RV~~hP~L~ 128 (140)
T cd06891 110 LKANLQRWFNRVCSDPILI 128 (140)
T ss_pred HHHHHHHHHHHHhCChhhc
Confidence 3557999999999988653
No 276
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=21.20 E-value=1.3e+02 Score=19.32 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=23.7
Q ss_pred cEEEecCCCCCchHHHHHHHhCCCccee
Q psy14324 4 YKLIYFPVKALAEPIRFLLSYMEQDFED 31 (203)
Q Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~ 31 (203)
+-|+|-|+++.+.-++.+++..|.++-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 3588999999999999999999876533
No 277
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=21.16 E-value=3.3e+02 Score=20.81 Aligned_cols=34 Identities=6% Similarity=0.019 Sum_probs=25.4
Q ss_pred cEEEecCCCCCch----HHHHHHHhCCCcceeeccCCC
Q psy14324 4 YKLIYFPVKALAE----PIRFLLSYMEQDFEDYRFERE 37 (203)
Q Consensus 4 ~~Ly~~~~s~~~~----~v~~~L~~~gi~~~~~~~~~~ 37 (203)
+.+++...||+|+ .++.+.+..|++...+.+|-.
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 5567778899998 456677888988777777753
No 278
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=21.13 E-value=64 Score=24.75 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=19.8
Q ss_pred CCccEEEecCCCCCchHHHHHHHh---CCCcceee
Q psy14324 1 MPTYKLIYFPVKALAEPIRFLLSY---MEQDFEDY 32 (203)
Q Consensus 1 M~~~~Ly~~~~s~~~~~v~~~L~~---~gi~~~~~ 32 (203)
||=+.|.|.|.|+.+.+++.+... .+.....+
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 888999999999998877766654 55544333
No 279
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=21.03 E-value=1.9e+02 Score=17.62 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=20.3
Q ss_pred cchhhhHHHHHHHHhhcCCcccCCcchHHHHHHHHHH
Q psy14324 124 ETIPYYQANFEELAKNNGGYLANGKLSWADIYFVACL 160 (203)
Q Consensus 124 ~~l~~~l~~le~~l~~~g~fl~G~~~s~aD~~l~~~l 160 (203)
+++.+.|..|-++-.++ .+++.|++++..-
T Consensus 48 ~~V~~sl~kL~~La~~N-------~v~feeLc~YAL~ 77 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKEN-------NVSFEELCVYALG 77 (82)
T ss_pred HHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHH
Confidence 44555666666665555 7899999988753
No 280
>PRK09266 hypothetical protein; Provisional
Probab=20.58 E-value=1.5e+02 Score=22.40 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=38.3
Q ss_pred HHHhCCCcceeeccCCCC---hhhh-cCCCCCCCCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 21 LLSYMEQDFEDYRFEREQ---WPEI-KPKMPFGKVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 21 ~L~~~gi~~~~~~~~~~~---~~~~-~~~~p~~~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
.+...|++++...+.+.+ .++. +--+-.|-+|+-..|+..+.+...|.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 456678999888888642 3333 333456889999998887765567777776655
No 281
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=20.48 E-value=3e+02 Score=18.90 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=11.7
Q ss_pred EEecCCCCCchHHHHHHH
Q psy14324 6 LIYFPVKALAEPIRFLLS 23 (203)
Q Consensus 6 Ly~~~~s~~~~~v~~~L~ 23 (203)
.|..+.||.|++-.-.|.
T Consensus 31 ~FwAsWCppCr~e~P~L~ 48 (146)
T cd03008 31 FFGAVVSPQCQLFAPKLK 48 (146)
T ss_pred EEECCCChhHHHHHHHHH
Confidence 344567888887666664
No 282
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.22 E-value=1.5e+02 Score=15.76 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.4
Q ss_pred chHHHHHHHHhcCchHHHHHHhC
Q psy14324 176 PTLKKLRDEVLAIPTIKKWVEKR 198 (203)
Q Consensus 176 p~l~~w~~~~~~~~~~~~~~~~~ 198 (203)
..+.++++++.+.|.+++-++.-
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~ 26 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKAC 26 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhc
Confidence 35788888999899888887763
No 283
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=20.00 E-value=3e+02 Score=18.80 Aligned_cols=73 Identities=18% Similarity=0.051 Sum_probs=41.0
Q ss_pred ccEEEecCCCCCchHHHHHHHhCCCc--ceeeccCCCChhhhcCCCC---CC-CCceEEECCeEeecHHHHHHHHHHhc
Q psy14324 3 TYKLIYFPVKALAEPIRFLLSYMEQD--FEDYRFEREQWPEIKPKMP---FG-KVPVLEVDGKQLHQSAAICRYLAKQC 75 (203)
Q Consensus 3 ~~~Ly~~~~s~~~~~v~~~L~~~gi~--~~~~~~~~~~~~~~~~~~p---~~-~vP~l~~~g~~l~es~~I~~yL~~~~ 75 (203)
++++++--.|+.|-..--+|..+.-. +++..+..+.....++..+ .. ..=.++.+|..+.+|.|+++-+...-
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 56677777789986555555555443 3333333332222333222 21 11222338899999999999777754
Done!