Query psy14325
Match_columns 103
No_of_seqs 162 out of 1147
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 16:58:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 99.9 2.1E-26 4.6E-31 147.0 10.9 95 3-97 10-108 (211)
2 PRK15113 glutathione S-transfe 99.9 7.5E-26 1.6E-30 144.8 11.8 95 2-96 4-110 (214)
3 KOG1695|consensus 99.9 1.4E-25 3E-30 142.1 11.1 101 1-101 1-102 (206)
4 PLN02473 glutathione S-transfe 99.9 2.9E-25 6.4E-30 141.7 11.1 97 3-99 2-107 (214)
5 PRK13972 GSH-dependent disulfi 99.9 3.2E-24 7E-29 137.2 10.5 95 3-98 1-107 (215)
6 PLN02395 glutathione S-transfe 99.9 1.3E-23 2.9E-28 134.1 10.6 95 1-97 1-104 (215)
7 COG0625 Gst Glutathione S-tran 99.9 2.4E-23 5.1E-28 132.8 10.1 93 4-96 1-103 (211)
8 KOG0406|consensus 99.9 2.5E-23 5.4E-28 133.1 9.9 95 4-98 10-110 (231)
9 cd03041 GST_N_2GST_N GST_N fam 99.9 1.3E-23 2.7E-28 115.2 6.6 73 3-75 1-77 (77)
10 PTZ00057 glutathione s-transfe 99.9 1.6E-22 3.5E-27 128.7 12.5 99 1-99 1-107 (205)
11 KOG0868|consensus 99.9 1.5E-23 3.3E-28 128.5 7.4 96 3-98 5-108 (217)
12 cd03059 GST_N_SspA GST_N famil 99.9 3.3E-23 7.2E-28 112.1 7.7 72 4-75 1-73 (73)
13 PRK10357 putative glutathione 99.9 1E-22 2.2E-27 129.0 11.1 96 4-99 1-101 (202)
14 cd03076 GST_N_Pi GST_N family, 99.9 3.2E-23 7E-28 112.5 7.4 72 3-74 1-73 (73)
15 cd03052 GST_N_GDAP1 GST_N fami 99.9 2.4E-23 5.1E-28 113.1 6.7 69 4-72 1-73 (73)
16 cd03045 GST_N_Delta_Epsilon GS 99.9 5.6E-23 1.2E-27 111.6 7.7 70 4-73 1-74 (74)
17 TIGR01262 maiA maleylacetoacet 99.9 1.3E-22 2.9E-27 129.0 10.4 92 5-96 1-100 (210)
18 PF13417 GST_N_3: Glutathione 99.9 2.3E-23 4.9E-28 113.7 4.9 71 6-76 1-72 (75)
19 cd03039 GST_N_Sigma_like GST_N 99.9 1.3E-22 2.9E-27 109.7 7.7 70 4-73 1-72 (72)
20 PRK11752 putative S-transferas 99.9 2.9E-22 6.4E-27 131.9 10.7 94 3-97 44-152 (264)
21 PRK10542 glutathionine S-trans 99.9 2E-22 4.3E-27 127.5 9.3 93 4-97 1-103 (201)
22 cd03050 GST_N_Theta GST_N fami 99.9 1.6E-22 3.5E-27 110.4 7.7 72 4-75 1-76 (76)
23 cd03058 GST_N_Tau GST_N family 99.9 1.5E-22 3.3E-27 110.0 7.6 72 4-75 1-74 (74)
24 cd03077 GST_N_Alpha GST_N fami 99.9 3E-22 6.6E-27 110.2 8.2 76 3-78 1-79 (79)
25 cd03053 GST_N_Phi GST_N family 99.9 2.1E-22 4.5E-27 109.8 7.4 71 4-74 2-76 (76)
26 cd03048 GST_N_Ure2p_like GST_N 99.9 3.4E-22 7.4E-27 110.3 7.9 73 3-76 1-80 (81)
27 cd03075 GST_N_Mu GST_N family, 99.9 5.7E-22 1.2E-26 109.9 8.6 72 4-75 1-82 (82)
28 cd03037 GST_N_GRX2 GST_N famil 99.9 1.4E-22 2.9E-27 109.4 5.8 70 4-73 1-71 (71)
29 KOG0867|consensus 99.9 7.8E-22 1.7E-26 127.4 10.2 98 3-100 2-108 (226)
30 PRK10387 glutaredoxin 2; Provi 99.9 8.6E-22 1.9E-26 125.3 9.5 93 4-98 1-96 (210)
31 cd03056 GST_N_4 GST_N family, 99.9 5.2E-22 1.1E-26 107.3 7.1 69 4-72 1-73 (73)
32 cd03046 GST_N_GTT1_like GST_N 99.9 1.7E-21 3.8E-26 106.1 8.8 72 4-76 1-76 (76)
33 cd03060 GST_N_Omega_like GST_N 99.9 5.6E-22 1.2E-26 107.0 6.8 68 4-71 1-70 (71)
34 cd03044 GST_N_EF1Bgamma GST_N 99.9 5.3E-22 1.2E-26 108.2 6.5 70 4-73 1-74 (75)
35 cd03057 GST_N_Beta GST_N famil 99.9 1.3E-21 2.9E-26 107.0 7.7 72 4-76 1-77 (77)
36 cd03047 GST_N_2 GST_N family, 99.9 1.2E-21 2.5E-26 106.3 7.2 69 4-72 1-73 (73)
37 PF02798 GST_N: Glutathione S- 99.9 1.4E-21 3.1E-26 106.8 7.1 70 4-73 1-76 (76)
38 TIGR02182 GRXB Glutaredoxin, G 99.9 2.9E-21 6.4E-26 123.3 8.9 93 5-99 1-96 (209)
39 cd03042 GST_N_Zeta GST_N famil 99.9 2.6E-21 5.5E-26 104.6 7.0 69 4-72 1-73 (73)
40 cd03051 GST_N_GTT2_like GST_N 99.9 1.7E-21 3.7E-26 105.4 6.3 69 4-72 1-74 (74)
41 cd03080 GST_N_Metaxin_like GST 99.9 4.3E-21 9.4E-26 104.6 7.8 68 3-76 1-75 (75)
42 cd03040 GST_N_mPGES2 GST_N fam 99.9 1.9E-21 4.1E-26 106.4 5.9 73 3-76 1-77 (77)
43 cd03061 GST_N_CLIC GST_N famil 99.9 3.1E-21 6.8E-26 108.3 6.8 67 10-76 20-87 (91)
44 cd03055 GST_N_Omega GST_N fami 99.8 4E-21 8.8E-26 107.9 6.7 70 3-72 18-89 (89)
45 cd03049 GST_N_3 GST_N family, 99.8 3.9E-21 8.5E-26 104.1 5.7 69 4-72 1-73 (73)
46 cd03038 GST_N_etherase_LigE GS 99.8 1.1E-19 2.3E-24 101.0 8.4 66 10-76 14-84 (84)
47 PLN02378 glutathione S-transfe 99.8 1.9E-19 4.1E-24 115.2 10.2 84 8-91 16-101 (213)
48 cd00570 GST_N_family Glutathio 99.8 2.4E-19 5.2E-24 95.2 7.9 69 4-72 1-71 (71)
49 TIGR00862 O-ClC intracellular 99.8 1.2E-18 2.7E-23 113.0 10.0 67 10-76 17-84 (236)
50 cd03043 GST_N_1 GST_N family, 99.8 2.7E-19 5.9E-24 97.0 5.7 65 8-72 6-73 (73)
51 PF13409 GST_N_2: Glutathione 99.8 1.6E-19 3.5E-24 97.2 4.5 64 11-74 1-70 (70)
52 PLN02817 glutathione dehydroge 99.8 1.7E-18 3.7E-23 114.1 8.9 83 10-92 71-155 (265)
53 cd03054 GST_N_Metaxin GST_N fa 99.8 2.1E-18 4.7E-23 93.1 7.4 65 4-74 1-72 (72)
54 cd03079 GST_N_Metaxin2 GST_N f 99.6 1.5E-15 3.3E-20 82.2 7.5 60 10-74 15-74 (74)
55 COG2999 GrxB Glutaredoxin 2 [P 99.6 6.8E-16 1.5E-20 94.9 5.3 98 4-101 1-99 (215)
56 KOG4420|consensus 99.6 1.5E-15 3.3E-20 98.3 4.5 73 3-75 26-102 (325)
57 PLN02907 glutamate-tRNA ligase 99.6 6.8E-14 1.5E-18 102.5 10.8 84 1-97 1-88 (722)
58 PRK10638 glutaredoxin 3; Provi 99.5 2E-13 4.3E-18 75.6 6.0 73 1-73 1-75 (83)
59 TIGR02190 GlrX-dom Glutaredoxi 99.4 1.9E-13 4.1E-18 75.1 4.5 70 3-72 9-79 (79)
60 KOG3029|consensus 99.4 2.9E-12 6.3E-17 84.1 7.3 70 3-73 90-159 (370)
61 cd03078 GST_N_Metaxin1_like GS 99.4 7.2E-12 1.6E-16 67.8 7.3 58 11-74 15-72 (73)
62 cd03029 GRX_hybridPRX5 Glutare 99.3 4.2E-12 9.1E-17 68.4 5.4 70 3-72 2-72 (72)
63 KOG4244|consensus 99.2 1.3E-10 2.9E-15 75.6 9.8 88 4-97 46-141 (281)
64 KOG1422|consensus 99.2 4.7E-11 1E-15 75.4 7.0 66 11-76 20-86 (221)
65 TIGR02196 GlrX_YruB Glutaredox 99.2 3.6E-11 7.9E-16 64.2 5.1 69 3-71 1-73 (74)
66 cd03027 GRX_DEP Glutaredoxin ( 99.2 4.6E-11 1E-15 64.5 5.1 66 3-68 2-69 (73)
67 cd02066 GRX_family Glutaredoxi 99.1 1.7E-10 3.7E-15 61.2 5.1 68 3-70 1-70 (72)
68 PRK10329 glutaredoxin-like pro 99.1 1.6E-10 3.4E-15 63.7 4.7 59 3-61 2-61 (81)
69 cd02976 NrdH NrdH-redoxin (Nrd 99.1 1.6E-10 3.5E-15 61.6 4.5 62 3-64 1-64 (73)
70 cd03418 GRX_GRXb_1_3_like Glut 99.1 5.1E-10 1.1E-14 60.4 5.1 70 3-72 1-73 (75)
71 PRK11200 grxA glutaredoxin 1; 99.0 1E-09 2.2E-14 60.8 6.0 75 3-77 2-85 (85)
72 TIGR02181 GRX_bact Glutaredoxi 99.0 1.8E-09 3.9E-14 59.0 5.4 70 4-73 1-72 (79)
73 COG0695 GrxC Glutaredoxin and 99.0 3.4E-09 7.3E-14 58.3 6.4 65 3-67 2-70 (80)
74 TIGR02183 GRXA Glutaredoxin, G 99.0 2.3E-09 5E-14 59.7 5.8 73 4-76 2-83 (86)
75 TIGR02194 GlrX_NrdH Glutaredox 98.9 2.5E-09 5.4E-14 57.5 3.8 56 4-59 1-57 (72)
76 TIGR02200 GlrX_actino Glutared 98.9 2.4E-09 5.1E-14 57.8 3.7 63 3-65 1-67 (77)
77 PF00462 Glutaredoxin: Glutare 98.8 2E-09 4.3E-14 55.9 1.5 58 4-61 1-60 (60)
78 cd03419 GRX_GRXh_1_2_like Glut 98.8 2.9E-08 6.4E-13 54.2 6.2 71 3-73 1-76 (82)
79 TIGR02189 GlrX-like_plant Glut 98.7 5.1E-08 1.1E-12 55.6 6.1 68 3-70 9-81 (99)
80 PHA03050 glutaredoxin; Provisi 98.7 7.5E-08 1.6E-12 55.8 5.9 67 3-69 14-88 (108)
81 TIGR02180 GRX_euk Glutaredoxin 98.7 1.4E-07 3E-12 51.6 6.6 70 4-73 1-77 (84)
82 TIGR00365 monothiol glutaredox 98.5 3.3E-07 7.2E-12 52.1 5.6 69 3-71 13-88 (97)
83 cd03028 GRX_PICOT_like Glutare 98.5 5.1E-07 1.1E-11 50.6 5.4 69 3-71 9-84 (90)
84 PF10568 Tom37: Outer mitochon 98.4 1.3E-06 2.7E-11 47.1 6.0 55 11-71 13-71 (72)
85 PRK12759 bifunctional gluaredo 98.3 2.2E-06 4.8E-11 60.0 6.7 69 1-69 1-79 (410)
86 cd03031 GRX_GRX_like Glutaredo 98.3 3.5E-06 7.5E-11 51.4 5.5 68 4-71 2-81 (147)
87 COG4545 Glutaredoxin-related p 98.1 1.6E-05 3.5E-10 42.7 5.1 62 1-62 1-77 (85)
88 cd02973 TRX_GRX_like Thioredox 98.0 3.6E-05 7.7E-10 40.3 5.7 58 3-62 2-64 (67)
89 PRK10824 glutaredoxin-4; Provi 97.9 3.4E-05 7.4E-10 45.1 5.4 68 4-71 17-91 (115)
90 KOG3027|consensus 97.9 0.00019 4.2E-09 45.9 8.4 85 11-100 33-119 (257)
91 PRK10026 arsenate reductase; P 97.8 3.4E-05 7.5E-10 46.7 3.7 36 1-36 1-36 (141)
92 cd03036 ArsC_like Arsenate Red 97.8 3.2E-05 7E-10 44.9 3.1 34 4-37 1-34 (111)
93 cd02977 ArsC_family Arsenate R 97.7 4.5E-05 9.8E-10 43.7 3.6 33 4-36 1-33 (105)
94 PRK01655 spxA transcriptional 97.7 3.9E-05 8.5E-10 45.9 3.4 33 4-36 2-34 (131)
95 cd03032 ArsC_Spx Arsenate Redu 97.7 4.9E-05 1.1E-09 44.4 3.5 33 4-36 2-34 (115)
96 PTZ00062 glutaredoxin; Provisi 97.6 0.00017 3.7E-09 46.2 5.4 66 4-69 115-187 (204)
97 TIGR01617 arsC_related transcr 97.5 0.00012 2.6E-09 42.9 3.4 33 4-36 1-33 (117)
98 PRK12559 transcriptional regul 97.5 0.00013 2.8E-09 43.7 3.5 34 3-36 1-34 (131)
99 PRK13344 spxA transcriptional 97.5 0.00014 3E-09 43.6 3.3 33 4-36 2-34 (132)
100 KOG1752|consensus 97.4 0.0011 2.4E-08 38.2 6.3 69 3-71 15-88 (104)
101 cd03030 GRX_SH3BGR Glutaredoxi 97.4 0.00073 1.6E-08 38.0 5.5 66 4-69 2-79 (92)
102 cd03035 ArsC_Yffb Arsenate Red 97.4 0.00024 5.3E-09 40.9 3.3 33 4-36 1-33 (105)
103 PF05768 DUF836: Glutaredoxin- 97.3 0.00067 1.5E-08 37.1 4.7 55 3-58 1-57 (81)
104 TIGR00411 redox_disulf_1 small 97.3 0.00077 1.7E-08 36.3 4.9 57 3-59 2-62 (82)
105 cd03033 ArsC_15kD Arsenate Red 97.3 0.00029 6.4E-09 41.1 3.3 34 3-36 1-34 (113)
106 COG1393 ArsC Arsenate reductas 97.3 0.00036 7.8E-09 41.0 3.6 34 3-36 2-35 (117)
107 PRK10853 putative reductase; P 97.2 0.00051 1.1E-08 40.4 3.1 33 4-36 2-34 (118)
108 TIGR01616 nitro_assoc nitrogen 97.1 0.00079 1.7E-08 40.0 3.6 34 3-36 2-35 (126)
109 PHA02125 thioredoxin-like prot 97.1 0.001 2.2E-08 35.8 3.6 51 4-56 2-52 (75)
110 TIGR00412 redox_disulf_2 small 97.0 0.0033 7.2E-08 33.9 5.5 55 4-62 3-61 (76)
111 cd03034 ArsC_ArsC Arsenate Red 96.9 0.0014 3.1E-08 38.0 3.4 33 4-36 1-33 (112)
112 TIGR00014 arsC arsenate reduct 96.9 0.0015 3.3E-08 38.1 3.5 33 4-36 1-33 (114)
113 cd03026 AhpF_NTD_C TRX-GRX-lik 96.7 0.0029 6.3E-08 35.3 3.6 60 3-62 15-77 (89)
114 KOG3028|consensus 96.5 0.08 1.7E-06 36.0 9.5 83 11-99 16-103 (313)
115 PF13192 Thioredoxin_3: Thiore 96.4 0.0093 2E-07 32.1 4.3 57 4-64 3-63 (76)
116 cd01659 TRX_superfamily Thiore 96.2 0.019 4E-07 28.1 4.5 53 4-56 1-59 (69)
117 KOG2903|consensus 96.2 0.028 6.1E-07 37.5 6.1 92 4-97 38-183 (319)
118 COG0278 Glutaredoxin-related p 96.2 0.045 9.8E-07 31.2 6.1 62 9-70 27-91 (105)
119 PF11287 DUF3088: Protein of u 96.1 0.02 4.2E-07 33.3 4.5 67 11-77 23-109 (112)
120 COG0435 ECM4 Predicted glutath 96.0 0.094 2E-06 35.4 7.9 94 3-98 51-186 (324)
121 PF09635 MetRS-N: MetRS-N bind 95.8 0.035 7.6E-07 32.7 4.8 28 48-75 33-62 (122)
122 cd03200 GST_C_JTV1 GST_C famil 95.8 0.015 3.3E-07 32.7 3.2 31 68-98 1-32 (96)
123 PF04908 SH3BGR: SH3-binding, 95.2 0.2 4.4E-06 28.6 6.5 68 1-69 1-85 (99)
124 PF03960 ArsC: ArsC family; I 94.6 0.028 6E-07 32.4 2.0 30 7-36 1-30 (110)
125 PRK15317 alkyl hydroperoxide r 94.1 0.1 2.3E-06 37.8 4.4 71 3-73 119-196 (517)
126 TIGR03140 AhpF alkyl hydropero 93.6 0.14 3E-06 37.2 4.3 61 3-63 120-183 (515)
127 PF00085 Thioredoxin: Thioredo 93.4 0.43 9.3E-06 26.2 5.4 70 4-73 21-102 (103)
128 cd02989 Phd_like_TxnDC9 Phosdu 92.7 0.69 1.5E-05 26.7 5.6 60 4-63 26-90 (113)
129 TIGR03143 AhpF_homolog putativ 92.2 0.31 6.7E-06 35.8 4.4 58 3-62 479-541 (555)
130 cd02975 PfPDO_like_N Pyrococcu 92.0 0.32 6.9E-06 28.1 3.6 53 4-56 25-81 (113)
131 TIGR02187 GlrX_arch Glutaredox 91.7 0.62 1.3E-05 29.9 5.0 53 4-56 137-192 (215)
132 cd02947 TRX_family TRX family; 91.5 1.2 2.6E-05 23.4 6.1 55 4-60 14-75 (93)
133 TIGR01295 PedC_BrcD bacterioci 91.4 1.8 3.9E-05 25.4 6.7 58 4-61 27-103 (122)
134 cd02949 TRX_NTR TRX domain, no 91.2 0.76 1.6E-05 25.4 4.5 58 4-61 17-80 (97)
135 cd02984 TRX_PICOT TRX domain, 90.8 1.3 2.8E-05 24.2 5.2 58 4-61 18-81 (97)
136 KOG0911|consensus 88.5 1.7 3.7E-05 28.4 5.0 61 9-69 151-213 (227)
137 PRK09381 trxA thioredoxin; Pro 88.1 3.2 6.9E-05 23.3 5.8 57 5-61 26-88 (109)
138 KOG2824|consensus 87.5 1.3 2.7E-05 29.9 4.0 58 14-71 149-212 (281)
139 cd02963 TRX_DnaJ TRX domain, D 87.2 2.1 4.6E-05 24.4 4.5 57 4-60 28-91 (111)
140 PTZ00051 thioredoxin; Provisio 87.1 1.8 3.9E-05 23.7 4.1 58 4-61 22-84 (98)
141 TIGR02187 GlrX_arch Glutaredox 87.1 1.9 4.1E-05 27.7 4.7 57 4-60 23-89 (215)
142 PHA02278 thioredoxin-like prot 85.0 3 6.4E-05 23.7 4.3 56 6-61 20-85 (103)
143 TIGR01068 thioredoxin thioredo 84.8 4.5 9.8E-05 21.8 6.6 55 5-59 19-79 (101)
144 cd02954 DIM1 Dim1 family; Dim1 84.4 2.1 4.6E-05 25.0 3.6 56 6-61 20-81 (114)
145 PRK10996 thioredoxin 2; Provis 82.7 7.9 0.00017 23.1 7.1 58 4-61 56-119 (139)
146 cd02959 ERp19 Endoplasmic reti 82.6 5.9 0.00013 22.9 5.0 57 4-60 23-89 (117)
147 cd02957 Phd_like Phosducin (Ph 82.3 5.1 0.00011 22.8 4.6 59 5-64 29-92 (113)
148 cd02956 ybbN ybbN protein fami 82.3 6.1 0.00013 21.4 5.2 57 4-60 16-78 (96)
149 TIGR02681 phage_pRha phage reg 81.3 2.4 5.2E-05 24.5 2.9 26 51-76 2-28 (108)
150 cd03003 PDI_a_ERdj5_N PDIa fam 80.2 5.2 0.00011 22.1 4.1 56 4-59 22-83 (101)
151 cd02953 DsbDgamma DsbD gamma f 79.8 2.5 5.5E-05 23.5 2.7 52 4-56 15-78 (104)
152 COG3019 Predicted metal-bindin 79.2 4.4 9.5E-05 24.7 3.6 71 3-75 27-104 (149)
153 cd02962 TMX2 TMX2 family; comp 78.3 8.3 0.00018 23.6 4.8 74 4-80 51-137 (152)
154 cd02994 PDI_a_TMX PDIa family, 77.8 7.2 0.00016 21.4 4.2 53 4-56 20-77 (101)
155 cd02965 HyaE HyaE family; HyaE 77.6 3.5 7.6E-05 24.0 2.8 60 4-63 31-98 (111)
156 cd03004 PDI_a_ERdj5_C PDIa fam 75.9 3.6 7.7E-05 22.8 2.6 53 4-56 23-79 (104)
157 KOG0190|consensus 75.8 14 0.00031 27.2 6.0 73 4-76 46-133 (493)
158 COG3011 Predicted thiol-disulf 74.2 17 0.00037 22.1 5.7 73 3-75 9-87 (137)
159 cd02955 SSP411 TRX domain, SSP 74.1 13 0.00028 21.9 4.7 59 6-64 21-97 (124)
160 cd03021 DsbA_GSTK DsbA family, 73.2 6.1 0.00013 25.2 3.4 35 2-36 1-39 (209)
161 cd02951 SoxW SoxW family; SoxW 73.2 7.9 0.00017 22.3 3.7 17 4-20 18-34 (125)
162 cd02961 PDI_a_family Protein D 73.0 10 0.00022 20.2 3.9 53 4-56 19-77 (101)
163 COG5494 Predicted thioredoxin/ 72.7 9.1 0.0002 25.1 4.0 59 3-61 12-70 (265)
164 cd02987 Phd_like_Phd Phosducin 71.4 22 0.00048 22.2 6.3 57 6-63 89-150 (175)
165 PLN00064 photosystem II protei 70.4 8.5 0.00018 24.0 3.3 52 52-103 57-109 (166)
166 PF09098 Dehyd-heme_bind: Quin 70.1 3.1 6.7E-05 26.0 1.5 19 62-80 54-72 (167)
167 cd02996 PDI_a_ERp44 PDIa famil 69.4 8.3 0.00018 21.6 3.1 56 4-59 22-89 (108)
168 TIGR01130 ER_PDI_fam protein d 69.1 30 0.00064 24.4 6.4 73 4-76 22-110 (462)
169 cd03005 PDI_a_ERp46 PDIa famil 68.0 17 0.00038 19.7 4.7 56 4-59 20-84 (102)
170 cd02997 PDI_a_PDIR PDIa family 67.9 18 0.00038 19.7 4.5 56 4-59 21-86 (104)
171 PF01323 DSBA: DSBA-like thior 66.9 6.9 0.00015 24.1 2.6 36 3-38 1-41 (193)
172 cd02952 TRP14_like Human TRX-r 66.6 24 0.00052 20.7 5.9 54 10-63 38-105 (119)
173 TIGR01764 excise DNA binding d 66.3 12 0.00027 17.3 3.4 26 47-72 23-48 (49)
174 PTZ00443 Thioredoxin domain-co 64.9 37 0.00079 22.3 8.2 72 4-75 56-139 (224)
175 PTZ00102 disulphide isomerase; 64.8 41 0.00088 24.0 6.4 73 4-76 53-139 (477)
176 PRK09266 hypothetical protein; 64.5 12 0.00025 24.9 3.4 55 21-75 200-258 (266)
177 cd03000 PDI_a_TMX3 PDIa family 64.4 20 0.00044 19.8 4.0 53 4-56 19-78 (104)
178 PF09413 DUF2007: Domain of un 64.3 4.6 9.9E-05 20.8 1.2 31 5-35 2-32 (67)
179 PHA03075 glutaredoxin-like pro 64.1 10 0.00022 22.4 2.6 34 3-36 4-37 (123)
180 cd03006 PDI_a_EFP1_N PDIa fami 63.2 9.3 0.0002 22.1 2.5 53 4-56 33-90 (113)
181 cd03002 PDI_a_MPD1_like PDI fa 63.1 18 0.00038 20.0 3.6 53 4-56 22-80 (109)
182 cd02950 TxlA TRX-like protein 63.0 23 0.00049 21.2 4.3 58 4-61 24-90 (142)
183 PF04564 U-box: U-box domain; 62.2 22 0.00047 18.7 4.1 26 49-75 14-39 (73)
184 PF09314 DUF1972: Domain of un 62.2 11 0.00023 24.0 2.8 20 57-76 154-173 (185)
185 cd02948 TRX_NDPK TRX domain, T 62.2 25 0.00055 19.5 6.2 57 4-61 21-84 (102)
186 cd03001 PDI_a_P5 PDIa family, 62.1 19 0.00041 19.5 3.6 53 4-56 22-78 (103)
187 COG3118 Thioredoxin domain-con 61.4 23 0.00049 24.4 4.3 73 4-76 47-131 (304)
188 cd02988 Phd_like_VIAF Phosduci 61.2 10 0.00022 24.1 2.6 56 6-64 108-168 (192)
189 cd03020 DsbA_DsbC_DsbG DsbA fa 60.9 15 0.00033 23.1 3.4 32 4-35 81-114 (197)
190 TIGR03044 PS_II_psb27 photosys 60.7 17 0.00037 22.0 3.3 46 57-102 34-79 (135)
191 cd02998 PDI_a_ERp38 PDIa famil 60.6 19 0.00041 19.5 3.5 53 4-56 22-81 (105)
192 PF04134 DUF393: Protein of un 60.4 27 0.00058 19.7 4.1 68 6-74 1-77 (114)
193 cd03065 PDI_b_Calsequestrin_N 59.4 27 0.00059 20.5 4.0 34 28-61 65-100 (120)
194 TIGR01126 pdi_dom protein disu 59.1 25 0.00055 18.9 3.8 52 4-55 17-74 (102)
195 cd02972 DsbA_family DsbA famil 58.9 13 0.00029 19.5 2.6 22 4-25 1-22 (98)
196 cd04911 ACT_AKiii-YclM-BS_1 AC 58.5 12 0.00026 20.2 2.2 25 12-36 15-39 (76)
197 cd02993 PDI_a_APS_reductase PD 57.5 32 0.0007 19.2 4.4 53 4-56 25-84 (109)
198 PF12728 HTH_17: Helix-turn-he 56.0 23 0.00049 16.9 3.8 28 47-74 23-50 (51)
199 cd03024 DsbA_FrnE DsbA family, 55.8 21 0.00045 22.2 3.4 33 4-36 1-41 (201)
200 KOG0907|consensus 55.0 29 0.00063 19.9 3.6 58 7-64 28-90 (106)
201 PRK13947 shikimate kinase; Pro 52.9 18 0.00039 21.9 2.7 32 1-32 1-32 (171)
202 PRK11657 dsbG disulfide isomer 52.8 22 0.00049 23.5 3.3 31 4-34 121-155 (251)
203 KOG0910|consensus 51.8 55 0.0012 20.2 4.7 58 4-61 65-128 (150)
204 PF11734 TilS_C: TilS substrat 51.8 15 0.00032 19.5 1.9 34 12-61 17-50 (74)
205 cd02978 KaiB_like KaiB-like fa 51.6 25 0.00054 18.9 2.7 52 4-55 4-60 (72)
206 cd03022 DsbA_HCCA_Iso DsbA fam 51.6 25 0.00055 21.6 3.2 32 4-35 1-36 (192)
207 cd00449 PLPDE_IV PyridoxaL 5'- 51.0 22 0.00048 23.1 3.0 53 21-73 196-254 (256)
208 KOG3425|consensus 50.8 53 0.0011 19.6 6.0 63 10-72 43-120 (128)
209 PF11823 DUF3343: Protein of u 49.7 27 0.00059 18.3 2.7 32 5-36 4-35 (73)
210 PF15608 PELOTA_1: PELOTA RNA 49.4 39 0.00084 19.4 3.4 29 5-33 59-87 (100)
211 PF14420 Clr5: Clr5 domain 48.9 34 0.00074 17.0 3.0 27 65-91 24-50 (54)
212 cd01557 BCAT_beta_family BCAT_ 48.4 16 0.00035 24.5 2.1 54 21-74 211-272 (279)
213 PF10757 YbaJ: Biofilm formati 48.4 29 0.00063 20.5 2.8 36 65-100 74-109 (122)
214 PRK06092 4-amino-4-deoxychoris 47.6 42 0.00091 22.2 4.0 53 21-74 208-264 (268)
215 PF13728 TraF: F plasmid trans 47.3 52 0.0011 21.3 4.2 53 4-56 124-189 (215)
216 PF14595 Thioredoxin_9: Thiore 47.2 19 0.00041 21.4 2.1 52 4-56 45-103 (129)
217 PRK13356 aminotransferase; Pro 47.0 31 0.00066 23.2 3.3 52 21-73 221-276 (286)
218 COG2761 FrnE Predicted dithiol 46.9 59 0.0013 21.5 4.4 27 3-29 7-37 (225)
219 PRK06606 branched-chain amino 45.7 29 0.00062 23.6 3.0 54 21-74 228-287 (306)
220 cd02995 PDI_a_PDI_a'_C PDIa fa 45.1 50 0.0011 17.8 3.8 52 4-56 22-79 (104)
221 PF13098 Thioredoxin_2: Thiore 44.5 14 0.0003 20.6 1.2 20 4-23 9-28 (112)
222 cd03025 DsbA_FrnE_like DsbA fa 43.9 46 0.001 20.4 3.6 32 4-35 3-40 (193)
223 cd02985 TRX_CDSP32 TRX family, 43.9 57 0.0012 18.0 5.3 57 5-61 20-84 (103)
224 COG3453 Uncharacterized protei 43.6 55 0.0012 19.6 3.5 60 10-74 42-108 (130)
225 PRK10667 Hha toxicity attenuat 43.6 39 0.00086 19.9 2.9 36 65-100 74-109 (122)
226 TIGR01122 ilvE_I branched-chai 43.5 34 0.00073 23.1 3.1 54 21-74 220-279 (298)
227 PRK13949 shikimate kinase; Pro 43.3 32 0.00068 21.2 2.7 32 1-32 1-32 (169)
228 PF03852 Vsr: DNA mismatch end 41.7 19 0.00041 19.5 1.3 41 16-58 25-65 (75)
229 cd02999 PDI_a_ERp44_like PDIa 41.7 23 0.00051 19.7 1.8 53 4-56 22-78 (100)
230 PRK07650 4-amino-4-deoxychoris 41.0 52 0.0011 22.0 3.6 52 21-72 212-268 (283)
231 PRK07544 branched-chain amino 40.6 42 0.00091 22.6 3.2 52 21-73 225-280 (292)
232 PF09868 DUF2095: Uncharacteri 40.2 18 0.00039 21.4 1.2 65 15-79 25-95 (128)
233 COG4408 Uncharacterized protei 39.5 20 0.00044 25.3 1.5 26 9-34 178-203 (431)
234 PRK08118 topology modulation p 39.4 38 0.00083 20.8 2.6 29 1-29 1-29 (167)
235 COG0041 PurE Phosphoribosylcar 39.4 41 0.00089 21.0 2.6 27 14-40 17-43 (162)
236 COG3150 Predicted esterase [Ge 38.9 37 0.0008 21.7 2.4 33 4-36 3-35 (191)
237 PRK10877 protein disulfide iso 37.9 32 0.00068 22.6 2.2 22 4-25 111-132 (232)
238 PF06053 DUF929: Domain of unk 37.5 32 0.0007 23.1 2.1 21 4-24 62-82 (249)
239 cd02982 PDI_b'_family Protein 37.4 27 0.00059 19.0 1.6 53 4-56 16-74 (103)
240 PRK05568 flavodoxin; Provision 36.9 81 0.0018 18.4 3.7 35 1-35 1-39 (142)
241 PF06110 DUF953: Eukaryotic pr 36.1 32 0.00068 20.3 1.8 56 10-65 36-106 (119)
242 TIGR01121 D_amino_aminoT D-ami 36.0 53 0.0012 21.9 3.1 56 18-73 208-269 (276)
243 TIGR01162 purE phosphoribosyla 35.6 36 0.00079 21.1 2.0 26 13-38 12-37 (156)
244 KOG2501|consensus 35.2 92 0.002 19.4 3.8 35 4-38 36-78 (157)
245 PF13326 PSII_Pbs27: Photosyst 34.7 53 0.0012 20.1 2.7 46 57-102 46-91 (145)
246 cd03019 DsbA_DsbA DsbA family, 34.3 62 0.0013 19.5 3.0 21 3-23 18-38 (178)
247 PF10850 DUF2653: Protein of u 34.1 46 0.001 18.7 2.1 16 64-79 11-26 (91)
248 PF07739 TipAS: TipAS antibiot 34.0 91 0.002 17.5 3.6 37 62-98 35-73 (118)
249 PF06953 ArsD: Arsenical resis 34.0 32 0.0007 20.4 1.6 41 21-61 35-83 (123)
250 PF00004 AAA: ATPase family as 34.0 61 0.0013 18.2 2.8 30 4-33 1-30 (132)
251 PF00731 AIRC: AIR carboxylase 33.8 28 0.0006 21.5 1.3 26 13-38 14-39 (150)
252 cd03023 DsbA_Com1_like DsbA fa 33.3 46 0.001 19.3 2.3 22 3-24 8-29 (154)
253 COG3384 Aromatic ring-opening 33.1 51 0.0011 22.4 2.6 59 15-73 95-158 (268)
254 TIGR02654 circ_KaiB circadian 33.0 64 0.0014 18.0 2.6 52 4-55 6-62 (87)
255 PRK08227 autoinducer 2 aldolas 32.6 37 0.00079 22.9 1.9 48 23-74 168-215 (264)
256 PRK09301 circadian clock prote 32.5 66 0.0014 18.5 2.6 53 4-56 9-66 (103)
257 TIGR01282 nifD nitrogenase mol 32.0 1.5E+02 0.0033 21.7 5.0 62 10-76 217-278 (466)
258 COG1102 Cmk Cytidylate kinase 31.0 60 0.0013 20.6 2.5 28 4-31 3-30 (179)
259 cd03008 TryX_like_RdCVF Trypar 31.0 1.3E+02 0.0028 18.3 4.4 31 8-38 33-75 (146)
260 COG2256 MGS1 ATPase related to 30.7 76 0.0017 23.1 3.2 35 2-36 49-83 (436)
261 COG4073 Uncharacterized protei 30.4 1.3E+02 0.0027 19.2 3.8 54 12-65 69-125 (198)
262 PF12062 HSNSD: heparan sulfat 30.3 1.7E+02 0.0037 21.7 4.9 48 6-64 65-117 (487)
263 PRK06217 hypothetical protein; 30.3 59 0.0013 20.1 2.4 29 1-29 1-29 (183)
264 PF01063 Aminotran_4: Aminotra 30.3 40 0.00088 21.4 1.8 56 18-74 171-230 (231)
265 COG0112 GlyA Glycine/serine hy 30.1 1E+02 0.0022 22.3 3.8 63 14-76 327-389 (413)
266 PRK07849 4-amino-4-deoxychoris 30.0 87 0.0019 21.2 3.4 50 21-71 227-280 (292)
267 cd01558 D-AAT_like D-Alanine a 29.9 77 0.0017 20.9 3.1 52 21-72 210-267 (270)
268 PF07689 KaiB: KaiB domain; I 29.7 10 0.00022 20.8 -0.9 50 6-55 2-56 (82)
269 KOG4023|consensus 29.4 1.2E+02 0.0026 17.5 4.2 60 1-60 1-76 (108)
270 COG3098 Uncharacterized protei 29.1 44 0.00096 19.3 1.5 45 54-101 62-106 (109)
271 cd08540 SAM_PNT-ERG Sterile al 28.8 1E+02 0.0022 16.6 2.9 16 84-99 9-24 (75)
272 PF12949 HeH: HeH/LEM domain; 28.7 59 0.0013 14.8 1.7 18 13-30 4-21 (35)
273 PRK12400 D-amino acid aminotra 28.5 1E+02 0.0022 20.8 3.5 55 20-74 217-277 (290)
274 PRK05569 flavodoxin; Provision 28.3 1.3E+02 0.0028 17.5 3.6 34 1-34 1-38 (141)
275 cd01976 Nitrogenase_MoFe_alpha 27.6 1.9E+02 0.0042 20.8 4.9 60 12-76 184-243 (421)
276 PF07511 DUF1525: Protein of u 27.5 1E+02 0.0023 18.1 3.0 28 46-73 79-107 (114)
277 COG5515 Uncharacterized conser 27.2 43 0.00094 17.4 1.2 21 4-24 3-27 (70)
278 TIGR00632 vsr DNA mismatch end 26.9 1.4E+02 0.003 17.6 3.4 42 16-59 25-66 (117)
279 KOG3131|consensus 26.3 37 0.0008 22.9 1.0 21 3-23 155-175 (281)
280 PF14427 Pput2613-deam: Pput_2 25.9 1.5E+02 0.0032 17.5 3.3 29 8-36 74-103 (118)
281 PRK03600 nrdI ribonucleotide r 25.7 1.2E+02 0.0025 18.2 3.0 20 3-22 2-21 (134)
282 PRK11509 hydrogenase-1 operon 25.4 1.6E+02 0.0035 17.7 4.1 49 13-61 49-104 (132)
283 PRK06852 aldolase; Validated 25.3 74 0.0016 22.0 2.4 51 22-73 197-252 (304)
284 cd01559 ADCL_like ADCL_like: 4 25.1 1.2E+02 0.0026 19.8 3.3 52 21-73 192-247 (249)
285 COG0716 FldA Flavodoxins [Ener 25.1 1.1E+02 0.0025 18.2 3.0 28 1-28 1-29 (151)
286 cd02986 DLP Dim1 family, Dim1- 25.1 1E+02 0.0022 18.1 2.6 54 7-60 21-80 (114)
287 KOG0742|consensus 25.0 79 0.0017 23.4 2.5 29 3-31 386-414 (630)
288 CHL00076 chlB photochlorophyll 24.9 3E+02 0.0064 20.5 5.6 60 12-76 179-238 (513)
289 PRK03731 aroL shikimate kinase 24.8 93 0.002 18.8 2.6 30 2-31 3-32 (171)
290 TIGR03461 pabC_Proteo aminodeo 24.7 1.6E+02 0.0034 19.4 3.8 49 21-70 206-258 (261)
291 PRK10222 PTS system L-ascorbat 24.1 1.3E+02 0.0028 16.4 2.8 22 16-37 5-26 (85)
292 COG4221 Short-chain alcohol de 24.0 2.3E+02 0.0051 19.1 4.5 92 4-96 8-110 (246)
293 KOG0737|consensus 23.9 83 0.0018 22.6 2.4 34 3-36 129-162 (386)
294 PRK14528 adenylate kinase; Pro 23.8 96 0.0021 19.3 2.6 29 1-29 1-29 (186)
295 PRK10954 periplasmic protein d 23.8 1.3E+02 0.0028 19.1 3.2 18 46-63 163-180 (207)
296 PF07728 AAA_5: AAA domain (dy 23.7 1.2E+02 0.0027 17.4 2.9 34 4-37 2-35 (139)
297 COG0703 AroK Shikimate kinase 23.6 1.2E+02 0.0027 19.1 3.0 32 2-33 3-34 (172)
298 PRK14478 nitrogenase molybdenu 23.4 2.8E+02 0.0061 20.3 5.1 20 12-31 203-222 (475)
299 PF04185 Phosphoesterase: Phos 23.4 1.1E+02 0.0024 21.5 3.0 29 49-77 339-375 (376)
300 PRK06680 D-amino acid aminotra 23.3 1.2E+02 0.0025 20.4 3.0 46 17-62 213-262 (286)
301 PRK13703 conjugal pilus assemb 23.3 2.2E+02 0.0049 19.1 4.3 33 4-36 147-183 (248)
302 cd08531 SAM_PNT-ERG_FLI-1 Ster 23.2 1.4E+02 0.003 16.1 2.8 16 84-99 9-24 (75)
303 PRK08320 branched-chain amino 22.9 1.2E+02 0.0027 20.2 3.1 41 21-61 219-263 (288)
304 KOG0730|consensus 22.8 89 0.0019 24.2 2.5 30 3-32 470-499 (693)
305 PRK12479 branched-chain amino 22.2 1.5E+02 0.0033 20.0 3.4 42 21-62 220-265 (299)
306 PLN02309 5'-adenylylsulfate re 22.2 2.2E+02 0.0047 21.0 4.3 53 4-56 369-428 (457)
307 TIGR03759 conj_TIGR03759 integ 22.1 2.4E+02 0.0051 18.4 4.7 52 5-56 138-193 (200)
308 KOG3039|consensus 22.0 95 0.002 21.1 2.3 25 50-75 54-78 (303)
309 PF13462 Thioredoxin_4: Thiore 22.0 63 0.0014 19.1 1.4 20 3-22 15-34 (162)
310 PF05496 RuvB_N: Holliday junc 22.0 1.3E+02 0.0028 20.1 2.9 32 3-34 52-83 (233)
311 KOG2454|consensus 21.9 1.4E+02 0.0031 21.8 3.3 30 6-35 226-255 (583)
312 PRK08105 flavodoxin; Provision 21.6 1.7E+02 0.0037 17.6 3.3 34 1-34 1-38 (149)
313 PF09633 DUF2023: Protein of u 21.1 1.8E+02 0.0039 16.7 3.1 32 4-36 17-48 (101)
314 KOG0623|consensus 20.9 1.5E+02 0.0034 21.2 3.2 33 1-34 1-33 (541)
315 PF05046 Img2: Mitochondrial l 20.9 1.3E+02 0.0028 16.5 2.4 33 43-75 6-49 (87)
316 TIGR01278 DPOR_BchB light-inde 20.6 3.1E+02 0.0067 20.3 4.9 79 13-98 175-257 (511)
317 cd08541 SAM_PNT-FLI-1 Sterile 20.6 1.7E+02 0.0038 16.4 2.9 22 78-99 13-36 (91)
318 PRK13600 putative ribosomal pr 20.3 1.3E+02 0.0028 16.6 2.3 19 15-33 44-62 (84)
319 KOG0335|consensus 20.1 1.1E+02 0.0023 22.8 2.4 69 6-74 341-425 (482)
320 KOG0733|consensus 20.1 1.2E+02 0.0025 23.7 2.6 31 4-34 226-256 (802)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.94 E-value=2.1e-26 Score=147.03 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=87.1
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC---CC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG---LN 78 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~---l~ 78 (103)
++|||+++.|++|++||++|+++|++|+.+.++..+ .++|++.||.|+||+|+++|.+|+||.||++||+++++ +.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~ 89 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLM 89 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCC
Confidence 589999999999999999999999999999999865 45899999999999999999999999999999999985 78
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy14325 79 GKDAWEDLQIDIAFETFND 97 (103)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~ 97 (103)
|.++.++++++.|+.++..
T Consensus 90 p~~~~~ra~~~~~~~~~~~ 108 (211)
T PRK09481 90 PVYPVARGESRLMMHRIEK 108 (211)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8889999999999877653
No 2
>PRK15113 glutathione S-transferase; Provisional
Probab=99.94 E-value=7.5e-26 Score=144.78 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=87.4
Q ss_pred CccEEEeeC--CCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 2 PSYKLYYFP--IKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 2 ~~~~Ly~~~--~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
|+++||+.+ .|++|++|+++|+++|++|+.+.++... .++|++.||.|+||+|++||.+|+||.||++||++++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 479999976 6999999999999999999999998743 4689999999999999999999999999999999998
Q ss_pred C------CCCCCHHHHHHHHHHHHHHH
Q psy14325 76 G------LNGKDAWEDLQIDIAFETFN 96 (103)
Q Consensus 76 ~------l~~~~~~~~~~~~~~~~~~~ 96 (103)
+ ++|.++.+++++++|+.+++
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~ 110 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLR 110 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 5 88999999999999999885
No 3
>KOG1695|consensus
Probab=99.93 E-value=1.4e-25 Score=142.12 Aligned_cols=101 Identities=55% Similarity=0.971 Sum_probs=97.6
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcCCCC
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCGLNG 79 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~l~~ 79 (103)
|+.++|+||+.++++..+|++++.+|++|+++.++.++ |.+.+...|+||+|+|..||..|.||.||+|||++++|+.|
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl~G 80 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGLAG 80 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCcCC
Confidence 88999999999999999999999999999999999988 88888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q psy14325 80 KDAWEDLQIDIAFETFNDFRQR 101 (103)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~ 101 (103)
+++.+++.++.+.+.+.|++.+
T Consensus 81 kt~~E~a~vD~i~d~~~D~~~~ 102 (206)
T KOG1695|consen 81 KTEEEEAWVDMIVDQFKDFRWE 102 (206)
T ss_pred CCHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999998876
No 4
>PLN02473 glutathione S-transferase
Probab=99.93 E-value=2.9e-25 Score=141.74 Aligned_cols=97 Identities=26% Similarity=0.325 Sum_probs=87.7
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC--
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG-- 76 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~-- 76 (103)
.+|||+++.|+++++|+++|+++|++|+.+.++..+ .+++++.||.|+||+|+++|.+|+||.||++||+++++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 489999999999999999999999999999998742 45788899999999999999999999999999999973
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHH
Q psy14325 77 ---LNGKDAWEDLQIDIAFETFNDFR 99 (103)
Q Consensus 77 ---l~~~~~~~~~~~~~~~~~~~~~~ 99 (103)
+.|.++.+++++++|+.++.+.+
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~ 107 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYF 107 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 78888899999999998887654
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.92 E-value=3.2e-24 Score=137.20 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=83.2
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEE-----CC--EEEeehHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEV-----DG--KQLHQSAAICRYL 71 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~-----~~--~~l~eS~aI~~yL 71 (103)
|+|||+.+ +++|++|+++|+++|++|+.+.++... .++|++.||.|+||+|++ || .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 37999888 799999999999999999999998743 468999999999999997 45 5799999999999
Q ss_pred HHhcC-CCCCCHHHHHHHHHHHHHHHHH
Q psy14325 72 AKQCG-LNGKDAWEDLQIDIAFETFNDF 98 (103)
Q Consensus 72 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 98 (103)
+++++ +.|.++.++++++.|+.+....
T Consensus 80 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~ 107 (215)
T PRK13972 80 AEKTGLFLSHETRERAATLQWLFWQVGG 107 (215)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99997 4577889999999999887643
No 6
>PLN02395 glutathione S-transferase
Probab=99.91 E-value=1.3e-23 Score=134.11 Aligned_cols=95 Identities=24% Similarity=0.280 Sum_probs=84.1
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhc-
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQC- 75 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~- 75 (103)
|+ +|||+.+ +++++||+++|+++|++|+.+.++.. ..+++++.||.|+||+|+++|.+|+||.||++||++++
T Consensus 1 ~~-~~ly~~~-~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 1 MV-LKVYGPA-FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred Ce-EEEEcCC-cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcC
Confidence 65 8999976 46799999999999999999999863 24689999999999999999999999999999999987
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHH
Q psy14325 76 ----GLNGKDAWEDLQIDIAFETFND 97 (103)
Q Consensus 76 ----~l~~~~~~~~~~~~~~~~~~~~ 97 (103)
++.|.++.+++++++|+.+.+.
T Consensus 79 ~~~~~l~p~~~~~~~~~~~~~~~~~~ 104 (215)
T PLN02395 79 SQGPDLLGKTIEERGQVEQWLDVEAT 104 (215)
T ss_pred CCCcCcCCCChhHHHHHHHHHHHHHH
Confidence 3888899999999999987653
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-23 Score=132.84 Aligned_cols=93 Identities=26% Similarity=0.284 Sum_probs=83.0
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC---CccccCCCCCCCCCceEEECCE-EEeehHHHHHHHHHhcC---
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD---NWPALKPKMPFGKMPVLEVDGK-QLHQSAAICRYLAKQCG--- 76 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~p~~~vP~l~~~~~-~l~eS~aI~~yL~~~~~--- 76 (103)
++||+.+.||+|.+|++++.++|++|+.+.++.. ..++|++.||.|+||+|+++|. +|+||.||++||+++++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 5899999999999999999999999999999986 3567999999999999998665 99999999999999996
Q ss_pred CCCCCHH---HHHHHHHHHHHHH
Q psy14325 77 LNGKDAW---EDLQIDIAFETFN 96 (103)
Q Consensus 77 l~~~~~~---~~~~~~~~~~~~~ 96 (103)
+.|.++. +++++..|+.+..
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~ 103 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAA 103 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHH
Confidence 8998874 7777778887764
No 8
>KOG0406|consensus
Probab=99.90 E-value=2.5e-23 Score=133.10 Aligned_cols=95 Identities=23% Similarity=0.244 Sum_probs=88.8
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC-CccccCCCC-CCCCCceEEECCEEEeehHHHHHHHHHhcC----C
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD-NWPALKPKM-PFGKMPVLEVDGKQLHQSAAICRYLAKQCG----L 77 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~-p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~----l 77 (103)
++||++..||+++|++++|++|||+|+.++++.. +.+.+++.| +.++||||+++|..|.||..|++||++.++ +
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~i 89 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPI 89 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCC
Confidence 8999999999999999999999999999999986 455678899 899999999999999999999999999984 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy14325 78 NGKDAWEDLQIDIAFETFNDF 98 (103)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ 98 (103)
+|.||.++++++.|++.+++.
T Consensus 90 LP~DPy~Ra~arfwa~~id~~ 110 (231)
T KOG0406|consen 90 LPSDPYERAQARFWAEYIDKK 110 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHhH
Confidence 999999999999999999863
No 9
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.90 E-value=1.3e-23 Score=115.21 Aligned_cols=73 Identities=26% Similarity=0.265 Sum_probs=65.6
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEE--CCEEEeehHHHHHHHHHhc
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEV--DGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 75 (103)
+++||+++.||+|++|+++|.++|++|+.+.++... .+++++.||.|+||+|++ +|..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 479999999999999999999999999999887542 457889999999999997 4689999999999999875
No 10
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.90 E-value=1.6e-22 Score=128.70 Aligned_cols=99 Identities=33% Similarity=0.608 Sum_probs=80.8
Q ss_pred CC-ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCc-----cccC--CCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 1 MP-SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW-----PALK--PKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 1 m~-~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~-----~~~~--~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
|+ +++|||++.++++++||++|+++|++|+.+.++.... ++++ +.||+|+||+|++||.+|+||.||++||+
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLS 80 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 44 6899999999999999999999999999997753221 1223 47999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy14325 73 KQCGLNGKDAWEDLQIDIAFETFNDFR 99 (103)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (103)
+++++.+.+..++..++.+...+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (205)
T PTZ00057 81 KKYKICGESELNEFYADMIFCGVQDIH 107 (205)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999988877766666666555554544
No 11
>KOG0868|consensus
Probab=99.90 E-value=1.5e-23 Score=128.47 Aligned_cols=96 Identities=23% Similarity=0.213 Sum_probs=87.0
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC-
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG- 76 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~- 76 (103)
++.||.+-.|.+++|||++|+.+||+|+.+.|+..+ ..+|++.||.++||+|++||.+|.||.||+.||++.++
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ 84 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPD 84 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCC
Confidence 678998888999999999999999999999999733 23799999999999999999999999999999999995
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHH
Q psy14325 77 --LNGKDAWEDLQIDIAFETFNDF 98 (103)
Q Consensus 77 --l~~~~~~~~~~~~~~~~~~~~~ 98 (103)
|.|+++..++.++++...+..-
T Consensus 85 ppLLP~d~~KRA~~r~i~~~i~sg 108 (217)
T KOG0868|consen 85 PPLLPKDPHKRAKARAISLLIASG 108 (217)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhC
Confidence 8999999999999988876543
No 12
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.90 E-value=3.3e-23 Score=112.12 Aligned_cols=72 Identities=26% Similarity=0.338 Sum_probs=66.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
++||+.+.||+|++++++|+++|++|+.+.++..+ .+++++.||.|++|+|+++|..++||.||++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 68999999999999999999999999999998754 4578899999999999999999999999999999874
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.90 E-value=1e-22 Score=129.02 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=84.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC-CccccCCCCCCCCCceEE-ECCEEEeehHHHHHHHHHhcC---CC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD-NWPALKPKMPFGKMPVLE-VDGKQLHQSAAICRYLAKQCG---LN 78 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~p~~~vP~l~-~~~~~l~eS~aI~~yL~~~~~---l~ 78 (103)
++||+++.||++++||++|+++|++|+.+.++.. ..+++.+.||.|+||+|+ ++|.+|+||.+|++||+++++ +.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999999999999988863 345677889999999998 588999999999999999874 78
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy14325 79 GKDAWEDLQIDIAFETFNDFR 99 (103)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ 99 (103)
|.++.+++++++|..+.++.+
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~ 101 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIM 101 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 889889999999987776544
No 14
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.89 E-value=3.2e-23 Score=112.52 Aligned_cols=72 Identities=39% Similarity=0.661 Sum_probs=65.7
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
.++||+++.|++|+++|++|+++|++|+.+.++.+. .+++++.||.|++|+|+++|..++||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 379999999999999999999999999999998643 346889999999999999999999999999999864
No 15
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.89 E-value=2.4e-23 Score=113.11 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=63.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
.+||+++.|++|++||++|+++|++|+.+.++.. ..+++++.||.|+||+|+++|.+++||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998863 24569999999999999999999999999999984
No 16
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.89 E-value=5.6e-23 Score=111.55 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=64.6
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
++||+++.|++|++++++|+++|++|+.+.++..+ .+++++.||.|++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999998632 46889999999999999999999999999999974
No 17
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.89 E-value=1.3e-22 Score=129.02 Aligned_cols=92 Identities=25% Similarity=0.339 Sum_probs=83.5
Q ss_pred EEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC-C----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC---
Q psy14325 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK-D----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG--- 76 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~-~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~--- 76 (103)
+||++..|+++++||++|+++|++|+.+.++. . ..+++++.||.|+||+|+++|.+|+||.+|++||+++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 58988889999999999999999999999886 2 245789999999999999999999999999999999983
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy14325 77 LNGKDAWEDLQIDIAFETFN 96 (103)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~ 96 (103)
+.|.++.+++++++|+.++.
T Consensus 81 l~p~~~~~~a~~~~~~~~~~ 100 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIA 100 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 88989999999999988875
No 18
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.89 E-value=2.3e-23 Score=113.65 Aligned_cols=71 Identities=32% Similarity=0.495 Sum_probs=66.8
Q ss_pred EEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 6 LYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
||+++.||+|+|+|++|+++|++|+.+.++..+ .+++.+.+|.|+||+|+++|..++||.+|++||+++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999765 46788899999999999999999999999999999986
No 19
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.89 E-value=1.3e-22 Score=109.68 Aligned_cols=70 Identities=54% Similarity=0.955 Sum_probs=63.8
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
++||+++.|++|++||++|+++|++|+.+.++... .+++.+.||.|++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 68999999999999999999999999999988743 34588899999999999999999999999999974
No 20
>PRK11752 putative S-transferase; Provisional
Probab=99.88 E-value=2.9e-22 Score=131.90 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=83.5
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhc------CCCcEEEEecCCC----ccccCCCCCCCCCceEEEC----CEEEeehHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYM------EQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVD----GKQLHQSAAIC 68 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~------gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~----~~~l~eS~aI~ 68 (103)
+++||+.+ |++|++|+++|+++ |++|+.+.++... .++|++.||.|+||+|+++ |.+|+||.||+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 58999976 99999999999997 8999999988632 4689999999999999984 37999999999
Q ss_pred HHHHHhcC-CCCCCHHHHHHHHHHHHHHHH
Q psy14325 69 RYLAKQCG-LNGKDAWEDLQIDIAFETFND 97 (103)
Q Consensus 69 ~yL~~~~~-l~~~~~~~~~~~~~~~~~~~~ 97 (103)
+||+++++ +.|.++.++++++.|+.+...
T Consensus 123 ~YL~~~~~~L~P~~~~era~v~~wl~~~~~ 152 (264)
T PRK11752 123 LYLAEKFGAFLPKDLAARTETLNWLFWQQG 152 (264)
T ss_pred HHHHHhcCCcCCCCHHHHHHHHHHHHHHhh
Confidence 99999997 889999999999999887653
No 21
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.88 E-value=2e-22 Score=127.49 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=80.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-----ccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHHHhcC-
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-----WPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLAKQCG- 76 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-----~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~~~~~- 76 (103)
|+||+.+.+ ++++++++|+++|++|+.+.++..+ .++|++.||.|+||+|++ ||.+|+||.||++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589998855 7999999999999999999998742 357999999999999985 88999999999999999985
Q ss_pred --CC-CCCHHHHHHHHHHHHHHHH
Q psy14325 77 --LN-GKDAWEDLQIDIAFETFND 97 (103)
Q Consensus 77 --l~-~~~~~~~~~~~~~~~~~~~ 97 (103)
+. |.++.+++++++|+.++..
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~ 103 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIAT 103 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHh
Confidence 44 6677889999999887643
No 22
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.88 E-value=1.6e-22 Score=110.42 Aligned_cols=72 Identities=32% Similarity=0.486 Sum_probs=65.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
++||+++.|++|++++++|+++|++|+.+.++..+ .+++.+.||.|++|+|+++|..++||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999998643 2467889999999999999999999999999999875
No 23
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.88 E-value=1.5e-22 Score=110.00 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=65.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCC-CCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPF-GKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~-~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
++||+++.||+|+++|++|+++|++|+.+.++... .+++++.||. |++|+|+++|..++||.||++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 68999999999999999999999999999888643 4578889995 999999999999999999999999864
No 24
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.88 E-value=3e-22 Score=110.23 Aligned_cols=76 Identities=34% Similarity=0.528 Sum_probs=63.9
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccC--CCCCCCCCceEEECCEEEeehHHHHHHHHHhcCCC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALK--PKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCGLN 78 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~--~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~l~ 78 (103)
+++||+++.+++|+++|++|+++|++|+.+.++..+ +.+.. ...|.|+||+|++||..|+||.||++||+++++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~~~ 79 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYNLY 79 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcCCC
Confidence 368999999999999999999999999999887532 11111 13479999999999999999999999999998864
No 25
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.88 E-value=2.1e-22 Score=109.84 Aligned_cols=71 Identities=30% Similarity=0.458 Sum_probs=65.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
++||+++.|++|+++|++|+++|++|+.+.++... .+++.+.||.|++|+|+++|..++||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999999888642 457889999999999999999999999999999874
No 26
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.88 E-value=3.4e-22 Score=110.32 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=65.8
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEEC---CEEEeehHHHHHHHHHhc
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVD---GKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~---~~~l~eS~aI~~yL~~~~ 75 (103)
+++||+++. |+|+++|++|+++|++|+.+.++.. ..+++++.||.|+||+|+++ |..|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999995 9999999999999999999999863 24578899999999999996 899999999999999987
Q ss_pred C
Q psy14325 76 G 76 (103)
Q Consensus 76 ~ 76 (103)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 27
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.88 E-value=5.7e-22 Score=109.86 Aligned_cols=72 Identities=33% Similarity=0.555 Sum_probs=62.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-----ccccCC-----CCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-----WPALKP-----KMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-----~~~~~~-----~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
.+|||+..+++|+++|++|+++|++|+.+.++..+ .++++. .+|+|+||+|++||..++||.||++||++
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 48999999999999999999999999999998743 133432 23999999999999999999999999998
Q ss_pred hc
Q psy14325 74 QC 75 (103)
Q Consensus 74 ~~ 75 (103)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 74
No 28
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.88 E-value=1.4e-22 Score=109.39 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=61.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEEC-CEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVD-GKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~-~~~l~eS~aI~~yL~~ 73 (103)
++||+++.||+|+++|++|+++|++|+.+.++.......++.+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 579999999999999999999999999998886543344567899999999985 8999999999999974
No 29
>KOG0867|consensus
Probab=99.88 E-value=7.8e-22 Score=127.36 Aligned_cols=98 Identities=30% Similarity=0.293 Sum_probs=89.4
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC--
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG-- 76 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~-- 76 (103)
.++||+.+.+++|++|.++++++|++++.+.++.. ..++|+++||.|+||+|+|+|..++||.||++||.++|+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 38999999999999999999999999999988863 267899999999999999999999999999999999885
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHh
Q psy14325 77 ---LNGKDAWEDLQIDIAFETFNDFRQ 100 (103)
Q Consensus 77 ---l~~~~~~~~~~~~~~~~~~~~~~~ 100 (103)
++|.+..+++.+++|+.+-++.+.
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~ 108 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLD 108 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhcccc
Confidence 888999999999999988776554
No 30
>PRK10387 glutaredoxin 2; Provisional
Probab=99.87 E-value=8.6e-22 Score=125.31 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=76.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEE-ECCEEEeehHHHHHHHHHhcC--CCCC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLE-VDGKQLHQSAAICRYLAKQCG--LNGK 80 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~-~~~~~l~eS~aI~~yL~~~~~--l~~~ 80 (103)
+|||+++.||+|++||++|+++|++|+.+.++........+.+|.|+||+|+ ++|..|+||.||++||+++|+ +.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~- 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT- 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-
Confidence 6899999999999999999999999999888654322235688999999995 789999999999999999996 332
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14325 81 DAWEDLQIDIAFETFNDF 98 (103)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (103)
..+++.+++|+.++...
T Consensus 80 -~~~~~~~~~~~~~~~~~ 96 (210)
T PRK10387 80 -GKRSPAIEEWLRKVFGY 96 (210)
T ss_pred -CcccHHHHHHHHHHHHH
Confidence 12567888888776543
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.87 E-value=5.2e-22 Score=107.29 Aligned_cols=69 Identities=36% Similarity=0.599 Sum_probs=63.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
++||+++.||+|+++|++|+++|++|+.+.++.. ..+++++.||.|++|+|+++|..++||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999863 24578889999999999999999999999999984
No 32
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.87 E-value=1.7e-21 Score=106.07 Aligned_cols=72 Identities=31% Similarity=0.420 Sum_probs=65.1
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
++||+++. ++++++|++|+++|++|+.+.++.. ..+++++.||.+++|+|+++|..++||.||++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999985 7899999999999999999999863 346788999999999999999999999999999999864
No 33
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.87 E-value=5.6e-22 Score=107.03 Aligned_cols=68 Identities=26% Similarity=0.291 Sum_probs=62.6
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEE-CCEEEeehHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYL 71 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL 71 (103)
++||+++.||+|++++++|+++|++|+.+.++..+ .+++++.||.|+||+|++ +|..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 48999999999999999999999999999998754 457889999999999998 599999999999997
No 34
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.87 E-value=5.3e-22 Score=108.18 Aligned_cols=70 Identities=31% Similarity=0.431 Sum_probs=64.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC---CccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD---NWPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~~ 73 (103)
.+||+++.|++|+++|++|+++|++|+.+.++.. ..+++++.||.|++|+|++ +|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 3799999999999999999999999999999874 3567899999999999997 68999999999999986
No 35
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.86 E-value=1.3e-21 Score=106.95 Aligned_cols=72 Identities=32% Similarity=0.420 Sum_probs=64.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEEC-CEEEeehHHHHHHHHHhcC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVD-GKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~-~~~l~eS~aI~~yL~~~~~ 76 (103)
++||+++.+ ++++||++|+++|++|+.+.++..+ .+++++.||.|++|+|+++ |..++||.+|++||+++++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999965 6899999999999999999998743 5688899999999999986 8999999999999999864
No 36
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.86 E-value=1.2e-21 Score=106.26 Aligned_cols=69 Identities=26% Similarity=0.340 Sum_probs=62.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
++||+++.|+++++||++|+++|++|+.+.++.. ..+++++.||.|++|+|+++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988752 24578899999999999999999999999999984
No 37
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.86 E-value=1.4e-21 Score=106.83 Aligned_cols=70 Identities=36% Similarity=0.589 Sum_probs=61.1
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCC-CCCceEEEC-CEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPF-GKMPVLEVD-GKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~-~~vP~l~~~-~~~l~eS~aI~~yL~~ 73 (103)
++|++|..++++.++|++|+++|++|+.+.+++.. .+++++.+|. |++|+|+++ |..++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 46777777779999999999999999999999743 3788999999 999999998 9999999999999986
No 38
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.86 E-value=2.9e-21 Score=123.32 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=76.1
Q ss_pred EEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEE-ECCEEEeehHHHHHHHHHhcC--CCCCC
Q psy14325 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLE-VDGKQLHQSAAICRYLAKQCG--LNGKD 81 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~-~~~~~l~eS~aI~~yL~~~~~--l~~~~ 81 (103)
+||++..||+|+|||++|+++|++|+.+.+.........+.||.|+||+|+ ++|..++||.+|++||+++++ +.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~-- 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT-- 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC--
Confidence 689999999999999999999999999877654433457889999999998 799999999999999999986 222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14325 82 AWEDLQIDIAFETFNDFR 99 (103)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (103)
+..+.++..|+.++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~ 96 (209)
T TIGR02182 79 GKVSPEIEAWLRKVTGYA 96 (209)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 224567778887766554
No 39
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.86 E-value=2.6e-21 Score=104.62 Aligned_cols=69 Identities=30% Similarity=0.396 Sum_probs=63.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC----CccccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD----NWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
++||+++.|++|+++|++|+++|++|+.+.++.. ..+++++.+|.|++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999863 24578889999999999999999999999999984
No 40
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.86 E-value=1.7e-21 Score=105.38 Aligned_cols=69 Identities=35% Similarity=0.560 Sum_probs=62.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLA 72 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~ 72 (103)
++||+++.||+|+++|++|+++|++|+.+.++... .+++.+.||.+++|+|++ +|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999988632 457889999999999995 8889999999999985
No 41
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.85 E-value=4.3e-21 Score=104.59 Aligned_cols=68 Identities=24% Similarity=0.417 Sum_probs=61.7
Q ss_pred ccEEEeeC-------CCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 3 SYKLYYFP-------IKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 3 ~~~Ly~~~-------~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
+++||+++ .||+|++|+++|+++|++|+.+.++. .+.+|.|++|+|+++|..++||.+|++||++++
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~ 74 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL------AKRSPKGKLPFIELNGEKIADSELIIDHLEEKY 74 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHHc
Confidence 36899998 58999999999999999999987753 368999999999999999999999999999987
Q ss_pred C
Q psy14325 76 G 76 (103)
Q Consensus 76 ~ 76 (103)
|
T Consensus 75 ~ 75 (75)
T cd03080 75 G 75 (75)
T ss_pred C
Confidence 5
No 42
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.85 E-value=1.9e-21 Score=106.36 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=63.6
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEEC----CEEEeehHHHHHHHHHhcC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVD----GKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~----~~~l~eS~aI~~yL~~~~~ 76 (103)
+++||+++.||+|+++|++|+++|++|+.+.++....+++ +.+|.++||+|+++ |.+++||.+|++||+++.|
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 4799999999999999999999999999998876443343 56999999999965 7899999999999998754
No 43
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.85 E-value=3.1e-21 Score=108.26 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 10 PIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 10 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
..||+|+++|++|+++|++|+.+.++... .++|++.||.|+||+|+++|.+++||.+|++||++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 45899999999999999999999999865 45789999999999999999999999999999999864
No 44
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.85 E-value=4e-21 Score=107.91 Aligned_cols=70 Identities=33% Similarity=0.473 Sum_probs=64.2
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCc-cccCCCCCCCCCceEEEC-CEEEeehHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW-PALKPKMPFGKMPVLEVD-GKQLHQSAAICRYLA 72 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~-~~~~~~~p~~~vP~l~~~-~~~l~eS~aI~~yL~ 72 (103)
+++||+++.||+|++++++|+++|++|+.+.++.... +++.+.||.+++|+|+++ |..++||.||++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 5899999999999999999999999999999987554 458889999999999986 899999999999985
No 45
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.84 E-value=3.9e-21 Score=104.12 Aligned_cols=69 Identities=30% Similarity=0.496 Sum_probs=62.8
Q ss_pred cEEEeeCCCCCcHHHHHHHHh--cCCCcEEEEecCC-CccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY--MEQDFEDIRIEKD-NWPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLA 72 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~--~gi~~~~~~v~~~-~~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~ 72 (103)
++||+++.||+|+++|++|++ +|++|+.+.++.. ..+++++.+|.+++|+|++ +|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999864 3568889999999999985 8899999999999984
No 46
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.82 E-value=1.1e-19 Score=101.00 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=58.0
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEecCCCc----cccCCCCCCCCCceEEEC-CEEEeehHHHHHHHHHhcC
Q psy14325 10 PIKGLAEPIRFILSYMEQDFEDIRIEKDNW----PALKPKMPFGKMPVLEVD-GKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 10 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~----~~~~~~~p~~~vP~l~~~-~~~l~eS~aI~~yL~~~~~ 76 (103)
+.|++|+++|++|+++|++|+.+.++..+. +++ +.||.|++|+|+++ |..++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 568999999999999999999999886432 233 78999999999998 8999999999999999863
No 47
>PLN02378 glutathione S-transferase DHAR1
Probab=99.82 E-value=1.9e-19 Score=115.24 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=70.6
Q ss_pred eeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcCCC-CCCHHHH
Q psy14325 8 YFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCGLN-GKDAWED 85 (103)
Q Consensus 8 ~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~l~-~~~~~~~ 85 (103)
++..||+|++|+++|+++|++|+.+.++... .++|++.||.|+||+|+++|.+|+||.+|++||+++++.. ..++.++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~~~~~~ 95 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEF 95 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCCCHHHH
Confidence 3456999999999999999999999999854 4479999999999999999999999999999999998522 2456666
Q ss_pred HHHHHH
Q psy14325 86 LQIDIA 91 (103)
Q Consensus 86 ~~~~~~ 91 (103)
+.+...
T Consensus 96 a~i~~~ 101 (213)
T PLN02378 96 ASVGSN 101 (213)
T ss_pred HHHHHH
Confidence 666554
No 48
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.81 E-value=2.4e-19 Score=95.21 Aligned_cols=69 Identities=35% Similarity=0.490 Sum_probs=62.6
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCcc--ccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWP--ALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~--~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
++||+++.||+|+++|++|+++|++|+.+.++..... ++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999875432 37788999999999999999999999999984
No 49
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.79 E-value=1.2e-18 Score=112.98 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=62.7
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 10 PIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 10 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
..||+|++|+++|.++|++|+.+.++... .++|++.||.|+||+|+++|.+|+||.+|++||+++++
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~ 84 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLC 84 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcC
Confidence 56899999999999999999999999865 47899999999999999999999999999999999984
No 50
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.79 E-value=2.7e-19 Score=97.03 Aligned_cols=65 Identities=28% Similarity=0.318 Sum_probs=58.7
Q ss_pred eeCCCCCcHHHHHHHHhcCCCcEEEEecCCC---ccccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 8 YFPIKGLAEPIRFILSYMEQDFEDIRIEKDN---WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 8 ~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~---~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
....|++|+++|++|+++|++|+.+.++..+ .+++++.||.|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 3467999999999999999999999998743 4678899999999999999999999999999984
No 51
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.79 E-value=1.6e-19 Score=97.21 Aligned_cols=64 Identities=30% Similarity=0.393 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHhcCCCcEEEEecC----C-CccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHHHh
Q psy14325 11 IKGLAEPIRFILSYMEQDFEDIRIEK----D-NWPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 11 ~~~~~~~vr~~l~~~gi~~~~~~v~~----~-~~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~~~ 74 (103)
.||+|+|++++|+++|++++...+.. . ..+++.+.||.|+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999988843 1 2357889999999999998 899999999999999975
No 52
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.78 E-value=1.7e-18 Score=114.12 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=71.0
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcCC-CCCCHHHHHH
Q psy14325 10 PIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCGL-NGKDAWEDLQ 87 (103)
Q Consensus 10 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~l-~~~~~~~~~~ 87 (103)
..||+|++|+++|+++|++|+.+.++... .++|++.||.|+||+|+++|..|+||.+|++||+++++- ...++.++++
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~~~~era~ 150 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPPEKAS 150 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 34999999999999999999999998854 557999999999999999999999999999999999862 1245677777
Q ss_pred HHHHH
Q psy14325 88 IDIAF 92 (103)
Q Consensus 88 ~~~~~ 92 (103)
+..++
T Consensus 151 i~~~l 155 (265)
T PLN02817 151 VGSKI 155 (265)
T ss_pred HHHHH
Confidence 76654
No 53
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.77 E-value=2.1e-18 Score=93.13 Aligned_cols=65 Identities=25% Similarity=0.412 Sum_probs=58.3
Q ss_pred cEEEeeC-------CCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 4 YKLYYFP-------IKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 4 ~~Ly~~~-------~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
++||.++ .||+|++++++|+++|++|+.+.++.. ..+|.|++|+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3678776 899999999999999999999988753 2789999999999999999999999999875
No 54
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.64 E-value=1.5e-15 Score=82.23 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=50.2
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 10 PIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 10 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
+.+++|.+++++|++.|++|+.+... . . ...+|.|+||+|++||.+++||.||+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~-~--~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N-A--EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C-c--cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 45789999999999999999987421 1 1 12667899999999999999999999999864
No 55
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.8e-16 Score=94.93 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=78.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHHHhcCCCCCCH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLAKQCGLNGKDA 82 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~~~~~l~~~~~ 82 (103)
|+||-+.+||+|.|+|+++..+|||++.+...-++.+--.++....+||+|+- +|..+.||..|++|+++..|-.-...
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 68999999999999999999999999998887766544567788889999995 99999999999999999987211112
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy14325 83 WEDLQIDIAFETFNDFRQR 101 (103)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (103)
.-+..++.|+..+....+|
T Consensus 81 ~~~pai~~wlrkv~~y~nk 99 (215)
T COG2999 81 KVRPAIEAWLRKVNGYLNK 99 (215)
T ss_pred CcCHHHHHHHHHhcchHhh
Confidence 2345677888877666554
No 56
>KOG4420|consensus
Probab=99.59 E-value=1.5e-15 Score=98.27 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=68.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
.+.||+++.|-.++|||++++++||+++...|+..+ .+.|.+.||.|.||||++|..+|.|+..|+.|+++++
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf 102 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTF 102 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhh
Confidence 378999999999999999999999999999999743 4689999999999999999999999999999999987
No 57
>PLN02907 glutamate-tRNA ligase
Probab=99.55 E-value=6.8e-14 Score=102.49 Aligned_cols=84 Identities=21% Similarity=0.276 Sum_probs=73.6
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHHHhcC---
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLAKQCG--- 76 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~~~~~--- 76 (103)
|+ ++||+.+. +.+.++.++|++.|++|+.+. .+|.|+||+|++ +|..|+||.||++||++.++
T Consensus 1 ~~-~kLy~~~~-S~~~~v~~~L~~lgv~~e~~~-----------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~ 67 (722)
T PLN02907 1 ME-AKLSFPPD-SPPLAVIAAAKVAGVPLTIDP-----------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPG 67 (722)
T ss_pred Ce-EEEEECCC-CChHHHHHHHHHcCCCcEEee-----------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcC
Confidence 66 89999885 458889999999999999864 368999999995 88999999999999999974
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy14325 77 LNGKDAWEDLQIDIAFETFND 97 (103)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~ 97 (103)
++|.++.+++++++|+.++..
T Consensus 68 L~p~d~~erAqV~qWL~~~~~ 88 (722)
T PLN02907 68 FYGQDAFESSQVDEWLDYAPT 88 (722)
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 788899999999999988754
No 58
>PRK10638 glutaredoxin 3; Provisional
Probab=99.47 E-value=2e-13 Score=75.59 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
|+.+++|..+.||+|.+++.+|+++|++|+.+.++... .+++.+.++..++|++..+|..+.....+..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 78899999999999999999999999999999987643 44677889999999999999999998887776543
No 59
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.44 E-value=1.9e-13 Score=75.06 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=61.5
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
+++||+-+.||+|.+++.+|+..|++|+.+.++.+. ..++...++..++|++..+|..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 589999999999999999999999999998887542 2345556788999999999999999999999984
No 60
>KOG3029|consensus
Probab=99.37 E-value=2.9e-12 Score=84.14 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=60.6
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
.++||.+..||+|-|||.+|.+.|++|+.++|++-...+. +-+...+||+|..+|+.+.||.+|+.-|+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eI-k~SsykKVPil~~~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEI-KWSSYKKVPILLIRGEQMVDSSVIISLLAT 159 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhc-cccccccccEEEeccceechhHHHHHHHHH
Confidence 4789999999999999999999999999999998554333 334788999999988889999999988855
No 61
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.36 E-value=7.2e-12 Score=67.83 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=50.0
Q ss_pred CCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 11 IKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 11 ~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
.||+|.++.++|+.+|++|+.+.... -...|.|++|+|+++|+.+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 47999999999999999998764321 24578999999999999999999999999875
No 62
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.33 E-value=4.2e-12 Score=68.38 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=60.0
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
+++||..+.||+|.+++.+|...|++|+.+.++.+. ..++.......++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 579999999999999999999999999999887543 2234445677899999999999999999999984
No 63
>KOG4244|consensus
Probab=99.24 E-value=1.3e-10 Score=75.64 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=74.0
Q ss_pred cEEEeeC-------CCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 4 YKLYYFP-------IKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 4 ~~Ly~~~-------~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
+-||.|+ .||+|.+|..+|+..+|||+.+.. .+...+..|++|.++.+|+.+.||.-|...|.++++
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~------~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~ 119 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC------SLKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFK 119 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc------cceeeccCCCcceEEeCCeeccccHHHHHHHHHHcC
Confidence 4577774 689999999999999999998763 344678999999999999999999999999999987
Q ss_pred CCC-CCHHHHHHHHHHHHHHHH
Q psy14325 77 LNG-KDAWEDLQIDIAFETFND 97 (103)
Q Consensus 77 l~~-~~~~~~~~~~~~~~~~~~ 97 (103)
+.. -++.++++..++...++.
T Consensus 120 ~~~~L~~e~~a~s~Al~rm~dn 141 (281)
T KOG4244|consen 120 IPDDLSAEQRAQSRALSRMADN 141 (281)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 544 567788888888777763
No 64
>KOG1422|consensus
Probab=99.23 E-value=4.7e-11 Score=75.37 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCCcHHHHHHHHhcCCCcEEEEecCCCcc-ccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 11 IKGLAEPIRFILSYMEQDFEDIRIEKDNWP-ALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 11 ~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~-~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
.||+|+++.+.|.++|++|+.+-|+..+.+ +|+...|.+++|+|..++..++||..|.++|+++++
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcC
Confidence 489999999999999999999999997655 677999999999999999999999999999999985
No 65
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.21 E-value=3.6e-11 Score=64.21 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=56.4
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEE--eehHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQL--HQSAAICRYL 71 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l--~eS~aI~~yL 71 (103)
+++||+.+.||+|.+++.+|++.|++|..+.++... .+++.+.++...+|+++.+|..+ +++.+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 479999999999999999999999999988776543 23466778999999999988777 5666666654
No 66
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.20 E-value=4.6e-11 Score=64.46 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=56.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAIC 68 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~ 68 (103)
.++||+.+.||+|.+++.+|++.|++|+.+.+.... .+++.+.++..++|++..+|..+..-....
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHH
Confidence 479999999999999999999999999999887543 456778889999999999998887665544
No 67
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.12 E-value=1.7e-10 Score=61.20 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=58.1
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRY 70 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~y 70 (103)
++++|+.+.||+|++++.+|+.+|++|+.+.+.... .+++.+.++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 378999999999999999999999999988877543 34566678889999999999999999887653
No 68
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.11 E-value=1.6e-10 Score=63.75 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=48.4
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCEEE
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGKQL 61 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~~l 61 (103)
+++||..+.||+|.++|.+|.++||+|+.+.++.+. ..+.....+..++|+++.++..+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~ 61 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSW 61 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEE
Confidence 489999999999999999999999999999988543 22223346888999999987654
No 69
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.11 E-value=1.6e-10 Score=61.59 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=52.0
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeeh
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQS 64 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS 64 (103)
.+++|+.+.||+|.+++.+|.++|++|..+.++.+. .+++.+.++.+++|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 378999999999999999999999999998887642 34566778999999999988766543
No 70
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.05 E-value=5.1e-10 Score=60.39 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=56.8
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCC-CCceEEECCEEEeehHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFG-KMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~-~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
+++||+.+.||+|.+++.+|+..|++|+.+.++... .+++.+..... ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 378999999999999999999999999999887642 23344444444 89999999999999888877643
No 71
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.04 E-value=1e-09 Score=60.84 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=61.8
Q ss_pred ccEEEeeCCCCCcHHHHHHHHh-----cCCCcEEEEecCCC--ccccCCCC--CCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSY-----MEQDFEDIRIEKDN--WPALKPKM--PFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~--~~~~~~~~--p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
.+++|+.+.||+|.+++-+|.. .|++|+.+.++.+. .+++.... +...+|.+..+|..+.....|..++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4899999999999999999999 89999999887542 22333322 336899999999999999999999998
Q ss_pred hcCC
Q psy14325 74 QCGL 77 (103)
Q Consensus 74 ~~~l 77 (103)
.+++
T Consensus 82 ~~~~ 85 (85)
T PRK11200 82 NLGL 85 (85)
T ss_pred hccC
Confidence 8763
No 72
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.98 E-value=1.8e-09 Score=58.96 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=58.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
+++|+.+.||+|.+++-+|+..|++|+.+.++.+. .+++.+......+|++..+|..+.+...+...-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999987642 33555666788999999999999888777766543
No 73
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.4e-09 Score=58.30 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=52.7
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCc---cccCC-CCCCCCCceEEECCEEEeehHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW---PALKP-KMPFGKMPVLEVDGKQLHQSAAI 67 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~---~~~~~-~~p~~~vP~l~~~~~~l~eS~aI 67 (103)
++++|..+.||||.+++-+|..+|++|+.+.++.... .++.+ .++..+||++..+|..+.....+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~ 70 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDL 70 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccH
Confidence 4899999999999999999999999999999887542 24444 45899999999999777644333
No 74
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.97 E-value=2.3e-09 Score=59.66 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=57.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcC-----CCcEEEEecCCC--ccccCCCCC--CCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYME-----QDFEDIRIEKDN--WPALKPKMP--FGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~g-----i~~~~~~v~~~~--~~~~~~~~p--~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
+++|+.++||+|.+++-+|...+ ++|+.+.++.+. .+++.+... ...||++..+|..+.++..|..++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 58999999999999999999984 567777766432 223433333 368999999999999999999999887
Q ss_pred cC
Q psy14325 75 CG 76 (103)
Q Consensus 75 ~~ 76 (103)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 65
No 75
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.89 E-value=2.5e-09 Score=57.53 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=44.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccccCCCCCCCCCceEEECCE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPALKPKMPFGKMPVLEVDGK 59 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~~~~ 59 (103)
++||+.+.||+|.+++-+|+++|++|+.+.++.+. ..+.+...+...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 58999999999999999999999999999887543 122233457779999998653
No 76
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.89 E-value=2.4e-09 Score=57.82 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCC-CCCCCceEEE-CCEEEeehH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKM-PFGKMPVLEV-DGKQLHQSA 65 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~-p~~~vP~l~~-~~~~l~eS~ 65 (103)
.++||+.+.||+|++++.+|...|++|+.+.++.+. .+.+.+.+ +...+|+++. +|..+.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 378999999999999999999999999987776432 22344555 8899999975 777776653
No 77
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.80 E-value=2e-09 Score=55.87 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=49.0
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l 61 (103)
+++|+.+.||+|.+++-+|+..|++|+.+.++... .+++.+.....++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999998753 33455556888999999988764
No 78
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.80 E-value=2.9e-08 Score=54.22 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=59.6
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCc-----cccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW-----PALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~-----~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
++++|+.+.||+|.+++-+|...+++|+...++.... ..+.+.....++|++..+|..+.++..|..+..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 3789999999999999999999999999999887542 1344556778999999999999999988887654
No 79
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.74 E-value=5.1e-08 Score=55.63 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=56.1
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCc-c----ccCCCCCCCCCceEEECCEEEeehHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW-P----ALKPKMPFGKMPVLEVDGKQLHQSAAICRY 70 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~-~----~~~~~~p~~~vP~l~~~~~~l~eS~aI~~y 70 (103)
++++|.-+.||+|.+++-+|...|++|+.+.++.... . ++.+.....++|.+..+|..+.....+...
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 5899999999999999999999999999999985421 1 344556788999999999988887766653
No 80
>PHA03050 glutaredoxin; Provisional
Probab=98.69 E-value=7.5e-08 Score=55.79 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=55.4
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCC---CcEEEEecCC-C----ccccCCCCCCCCCceEEECCEEEeehHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKD-N----WPALKPKMPFGKMPVLEVDGKQLHQSAAICR 69 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~-~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~ 69 (103)
++++|..+.||||.+++-+|...|+ +|+.+.++.. . .+++.+.....+||.+..+|..+.....+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 5899999999999999999999999 7888888752 1 2345666777899999999998877766655
No 81
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.68 E-value=1.4e-07 Score=51.64 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=57.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCC--cEEEEecCCCcc-----ccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQD--FEDIRIEKDNWP-----ALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~--~~~~~v~~~~~~-----~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
+++|+.+.||+|.+++-+|...+++ |+...++..... .+.+.....++|.+..+|..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 888888865322 244456677899999999999999888877654
No 82
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.54 E-value=3.3e-07 Score=52.07 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred ccEEEee-----CCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHHH
Q psy14325 3 SYKLYYF-----PIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYL 71 (103)
Q Consensus 3 ~~~Ly~~-----~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL 71 (103)
++.+|.- +.||+|.+++-+|...|++|+.+.+.... ..++.+.....++|.+..+|..+.....+....
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 4567754 78999999999999999999988875332 224445567779999999999888777766543
No 83
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.49 E-value=5.1e-07 Score=50.57 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=54.1
Q ss_pred ccEEEee-----CCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHHH
Q psy14325 3 SYKLYYF-----PIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYL 71 (103)
Q Consensus 3 ~~~Ly~~-----~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL 71 (103)
++.+|.- +.||+|.+++-+|...|++|+.+.+..+. ..++.+.....++|.+..+|..+.....+....
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 3567754 68999999999999999999999886542 224445567779999999999998887777643
No 84
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.45 E-value=1.3e-06 Score=47.11 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=47.1
Q ss_pred CCCCcHHHHHHHHhcCCC---cEEEEecCCCccccCCCCCCCCCceEEE-CCEEEeehHHHHHHH
Q psy14325 11 IKGLAEPIRFILSYMEQD---FEDIRIEKDNWPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYL 71 (103)
Q Consensus 11 ~~~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL 71 (103)
.++.|.++.++|+..+.+ ++.+..+-. .+.|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 578999999999999999 665553321 3789999999999 999999999999998
No 85
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.33 E-value=2.2e-06 Score=60.05 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-ccc---------cCCCCCCCCCceEEECCEEEeehHHHHH
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WPA---------LKPKMPFGKMPVLEVDGKQLHQSAAICR 69 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~---------~~~~~p~~~vP~l~~~~~~l~eS~aI~~ 69 (103)
|..+++|.-+.||+|.+++-+|...||+|+.+.++-+. ..+ +.......+||++..||..+..-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 77899999999999999999999999999999987432 112 2233567789999999988877766655
No 86
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.25 E-value=3.5e-06 Score=51.35 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=54.6
Q ss_pred cEEEeeC------CCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCC----CCCCceEEECCEEEeehHHHHHHH
Q psy14325 4 YKLYYFP------IKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMP----FGKMPVLEVDGKQLHQSAAICRYL 71 (103)
Q Consensus 4 ~~Ly~~~------~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p----~~~vP~l~~~~~~l~eS~aI~~yL 71 (103)
+.||..+ ++|+|.+++.+|+..|++|+++.++.+. .+++.+... ...+|.+..+|..|.....+.+.-
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L~ 81 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLN 81 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 6789888 8999999999999999999999887642 234433332 478999999999999888877743
No 87
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.6e-05 Score=42.69 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=49.7
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC------------CccccC--CCCCCCCCceEEE-CCEEEe
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD------------NWPALK--PKMPFGKMPVLEV-DGKQLH 62 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~------------~~~~~~--~~~p~~~vP~l~~-~~~~l~ 62 (103)
|++.+||+...||-|....-.|+-.+++|+.+.+... ..++|- +.+.+-.+|+|.. +|.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 7888999999999999999999999999999998642 133442 3577778999875 666654
No 88
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.00 E-value=3.6e-05 Score=40.35 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=41.8
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhc-----CCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEe
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYM-----EQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLH 62 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 62 (103)
++++|+.+.||+|.+++-+|++. ++++.. ++.++.++..+......+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~--id~~~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEM--IDAAEFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEE--EEcccCHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999998865 444444 44444344445555667999999887664
No 89
>PRK10824 glutaredoxin-4; Provisional
Probab=97.95 E-value=3.4e-05 Score=45.15 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=53.2
Q ss_pred cEEEee-----CCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHHH
Q psy14325 4 YKLYYF-----PIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYL 71 (103)
Q Consensus 4 ~~Ly~~-----~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL 71 (103)
+.+|.- +.||||.+++-+|...|++|..+.++.+. ...+.+.....+||-+-.+|..+.....+....
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 556654 48999999999999999999988776432 234555678889999999999998887776643
No 90
>KOG3027|consensus
Probab=97.89 E-value=0.00019 Score=45.93 Aligned_cols=85 Identities=9% Similarity=0.070 Sum_probs=68.0
Q ss_pred CCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcCCC--CCCHHHHHHH
Q psy14325 11 IKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCGLN--GKDAWEDLQI 88 (103)
Q Consensus 11 ~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~l~--~~~~~~~~~~ 88 (103)
....|..|..+|+..++||..+...- .+ -++|.|+||.|..|.+.++|=.+|..+...+..-. ..+..+++.+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~N---ae--fmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadm 107 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRAN---AE--FMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADM 107 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecCC---cc--ccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHH
Confidence 35679999999999999999765321 22 36899999999999999999999999999986322 2456678888
Q ss_pred HHHHHHHHHHHh
Q psy14325 89 DIAFETFNDFRQ 100 (103)
Q Consensus 89 ~~~~~~~~~~~~ 100 (103)
+..++.++.++.
T Consensus 108 ra~vslVen~~t 119 (257)
T KOG3027|consen 108 RAYVSLVENLLT 119 (257)
T ss_pred HHHHHHHHHHHH
Confidence 888888877664
No 91
>PRK10026 arsenate reductase; Provisional
Probab=97.79 E-value=3.4e-05 Score=46.67 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=33.6
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
|+++++|+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~ 36 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLE 36 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeC
Confidence 788999999999999999999999999999998743
No 92
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.76 E-value=3.2e-05 Score=44.91 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD 37 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~ 37 (103)
++||+.+.|++|.+++-.|++.|++|+.+.+..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999988653
No 93
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.74 E-value=4.5e-05 Score=43.72 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=30.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|++|++++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 589999999999999999999999999998864
No 94
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.74 E-value=3.9e-05 Score=45.87 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=31.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|++|++++-+|...|++|+.+.+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 899999999999999999999999999998864
No 95
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.72 E-value=4.9e-05 Score=44.39 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=31.1
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|+.|++++-.|+..|++|+.+.+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 799999999999999999999999999998854
No 96
>PTZ00062 glutaredoxin; Provisional
Probab=97.64 E-value=0.00017 Score=46.21 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=50.9
Q ss_pred cEEEee-----CCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHH
Q psy14325 4 YKLYYF-----PIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICR 69 (103)
Q Consensus 4 ~~Ly~~-----~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~ 69 (103)
+.||.- +.||+|.+++-+|+..|++|+...+..+. ...+.+.....++|.+..+|+.+.....+.+
T Consensus 115 Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 115 ILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred EEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 556643 57999999999999999999988776432 2244556677899999999998877766665
No 97
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.54 E-value=0.00012 Score=42.87 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=30.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|+.|++++-+|++.|++|+.+.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 589999999999999999999999999998864
No 98
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.53 E-value=0.00013 Score=43.67 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=31.6
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
|+++|+.+.|+.|++++-.|...|++|+.+.+..
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 3899999999999999999999999999998864
No 99
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.49 E-value=0.00014 Score=43.62 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=31.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|+.|++++-.|...|++|+.+.+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 899999999999999999999999999998864
No 100
>KOG1752|consensus
Probab=97.42 E-value=0.0011 Score=38.17 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=55.1
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC-cc----ccCCCCCCCCCceEEECCEEEeehHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN-WP----ALKPKMPFGKMPVLEVDGKQLHQSAAICRYL 71 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-~~----~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL 71 (103)
++.+|.-..||+|.+++-+|...|+++..+++|... .. .+.+.....+||.+-.+|..+..+..+..+-
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 366788889999999999999999999999998743 22 2334566679999999999988887776654
No 101
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.42 E-value=0.00073 Score=38.03 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=49.8
Q ss_pred cEEEeeCCCC------CcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCC----CCCCCceEEECCEEEeehHHHHH
Q psy14325 4 YKLYYFPIKG------LAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKM----PFGKMPVLEVDGKQLHQSAAICR 69 (103)
Q Consensus 4 ~~Ly~~~~~~------~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~----p~~~vP~l~~~~~~l~eS~aI~~ 69 (103)
+++|+...++ .|+.|+.+|..+||+|+.+.++.+. ..++.+.. +...+|-+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6788877665 4678899999999999999998743 23444443 45789999899999888766554
No 102
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.38 E-value=0.00024 Score=40.88 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=30.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|+.|++++-.|.+.|++|+.+.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999999999999998764
No 103
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.34 E-value=0.00067 Score=37.11 Aligned_cols=55 Identities=31% Similarity=0.445 Sum_probs=41.7
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcC--CCcEEEEecCCCccccCCCCCCCCCceEEECC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYME--QDFEDIRIEKDNWPALKPKMPFGKMPVLEVDG 58 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~g--i~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~ 58 (103)
+++||+-++|+.|..++.+|+... .+++...++..+.+++.+.... .+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcC-CCCEEEEcC
Confidence 478999999999999999999644 5577778887765665555553 799999866
No 104
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.33 E-value=0.00077 Score=36.33 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=42.0
Q ss_pred ccEEEeeCCCCCcHHHHHHHHh----cCCCcEEEEecCCCccccCCCCCCCCCceEEECCE
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSY----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGK 59 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~ 59 (103)
++++|+.+.|++|..+.-.++. .+..+....++.++.++..+......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCE
Confidence 4689999999999998888764 34446666777655555555566678999988775
No 105
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.33 E-value=0.00029 Score=41.09 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=31.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
.++||+.+.|+.|++++-.|++.|++|+.+.+.-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~ 34 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLT 34 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhc
Confidence 3789999999999999999999999999988754
No 106
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00036 Score=41.00 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=31.4
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
++++|+.+.|.-|++++-.|+..|++|+.+.+.-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~ 35 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLK 35 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeec
Confidence 5899999999999999999999999999887753
No 107
>PRK10853 putative reductase; Provisional
Probab=97.16 E-value=0.00051 Score=40.39 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=30.8
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehcc
Confidence 899999999999999999999999999988753
No 108
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.10 E-value=0.00079 Score=40.03 Aligned_cols=34 Identities=21% Similarity=0.055 Sum_probs=31.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
.++||+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~ 35 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILK 35 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC
Confidence 4799999999999999999999999999998753
No 109
>PHA02125 thioredoxin-like protein
Probab=97.08 E-value=0.001 Score=35.75 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=40.0
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+.+|+.+.|+.|..+.-.|+. +.++...++.+...+..+.+.-..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDEGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCCCHHHHHHcCCceeCeEEC
Confidence 788999999999999888864 567777777666556666677778999984
No 110
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.05 E-value=0.0033 Score=33.87 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=40.6
Q ss_pred cEEEeeCCCCCcHHH----HHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEe
Q psy14325 4 YKLYYFPIKGLAEPI----RFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLH 62 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 62 (103)
+++|. +.||.|..+ .-++++.|.+++.+.++. .++ ........+|++..+|..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~--~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD--MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC--HHH-HHHcCCCcCCEEEECCEEEE
Confidence 66766 899999998 668888999888887772 112 23356778999998886553
No 111
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.91 E-value=0.0014 Score=38.05 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=30.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLK 33 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccc
Confidence 589999999999999999999999999987743
No 112
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.90 E-value=0.0015 Score=38.06 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=30.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+++|+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLK 33 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccC
Confidence 589999999999999999999999999988754
No 113
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.73 E-value=0.0029 Score=35.27 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=41.4
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCC---CcEEEEecCCCccccCCCCCCCCCceEEECCEEEe
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLH 62 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 62 (103)
.+.+|..++|++|..++-++..... .++...++.++.++......-..+|.++.+|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEECCEEEE
Confidence 4788999999999998887765422 23444444444455556666778999998876554
No 114
>KOG3028|consensus
Probab=96.45 E-value=0.08 Score=36.04 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEE-CCEEEeehHHHHHHHHHh---cCCCCC-CHHHH
Q psy14325 11 IKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLAKQ---CGLNGK-DAWED 85 (103)
Q Consensus 11 ~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~-~~~~l~eS~aI~~yL~~~---~~l~~~-~~~~~ 85 (103)
.++.|.++.++++..+-|.+.+..+-. -+.|.|++|+|+. +|..++.-..|..+|... |.+... ...+.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~------~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~ 89 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNP------WRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQL 89 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCC------CCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHH
Confidence 468899999999999966554443211 2578999999997 569999999999999983 333332 25667
Q ss_pred HHHHHHHHHHHHHH
Q psy14325 86 LQIDIAFETFNDFR 99 (103)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (103)
+....|+.++.+..
T Consensus 90 a~~~a~~sll~~~l 103 (313)
T KOG3028|consen 90 ADTLAFMSLLEENL 103 (313)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888776654
No 115
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.42 E-value=0.0093 Score=32.07 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=38.3
Q ss_pred cEEEeeCCCCCcHHHHH----HHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeeh
Q psy14325 4 YKLYYFPIKGLAEPIRF----ILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQS 64 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~----~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS 64 (103)
+++ ..+.||+|..+.- ++...|+.++.+.+ .+.++. .......+|+++.||...+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 667 5667999996665 55566766655443 444444 667788999999998766544
No 116
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.18 E-value=0.019 Score=28.14 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=35.7
Q ss_pred cEEEeeCCCCCcHHHHHHHH-----hcCCCcEEEEecCCCc-cccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILS-----YMEQDFEDIRIEKDNW-PALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~-----~~gi~~~~~~v~~~~~-~~~~~~~p~~~vP~l~~ 56 (103)
+.+|+...|+.|.+++..+. ..++.+..+.++.... .......+...+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 35778888999999999999 4455555555443321 11123678889999886
No 117
>KOG2903|consensus
Probab=96.16 E-value=0.028 Score=37.50 Aligned_cols=92 Identities=18% Similarity=0.071 Sum_probs=60.1
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCC----cEEEEe-cCC------C-------c------cc-----------cCCC---
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQD----FEDIRI-EKD------N-------W------PA-----------LKPK--- 45 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~----~~~~~v-~~~------~-------~------~~-----------~~~~--- 45 (103)
+-||..-.||++.|..++.+.||++ +..+.. ..+ + . .+ |...
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 6688888899999999999999986 222222 100 0 0 00 0001
Q ss_pred -CCCCCCceEEE---CCEEEeehHHHHHHHHHhc------------CCCCCCHHHHHHHHHHHHHHHH
Q psy14325 46 -MPFGKMPVLEV---DGKQLHQSAAICRYLAKQC------------GLNGKDAWEDLQIDIAFETFND 97 (103)
Q Consensus 46 -~p~~~vP~l~~---~~~~l~eS~aI~~yL~~~~------------~l~~~~~~~~~~~~~~~~~~~~ 97 (103)
....+||||.| ...+--||..|++.+..-+ .|+| +..+++++++.+|+.+
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~ 183 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYD 183 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecc
Confidence 22447999998 3356689999999999433 1445 4457888888887754
No 118
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.045 Score=31.23 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=46.6
Q ss_pred eCCCCCcHHHHHHHHhcC-CCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHHH
Q psy14325 9 FPIKGLAEPIRFILSYME-QDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICRY 70 (103)
Q Consensus 9 ~~~~~~~~~vr~~l~~~g-i~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~y 70 (103)
+|-|+++.++--+|...| ++|..+.|-.+. ....++.+...+.|-|-.+|+-+..|.-|.+-
T Consensus 27 ~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 27 FPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred CCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHH
Confidence 578999999999999999 566655554432 33455667888999999999988888655543
No 119
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.06 E-value=0.02 Score=33.29 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=44.1
Q ss_pred CCCCcHHHHHHHHh---cCCCcEEEEecCCCc-cccCCC--CCCCCCceEEE-CCE-------------EEeehHHHHHH
Q psy14325 11 IKGLAEPIRFILSY---MEQDFEDIRIEKDNW-PALKPK--MPFGKMPVLEV-DGK-------------QLHQSAAICRY 70 (103)
Q Consensus 11 ~~~~~~~vr~~l~~---~gi~~~~~~v~~~~~-~~~~~~--~p~~~vP~l~~-~~~-------------~l~eS~aI~~y 70 (103)
.||.|..+.=+|.. ..-..+.+.|++.+. .+..+. -.+..+|+|+. +|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 37888888777763 223345556666442 122221 23557899996 433 68999999999
Q ss_pred HHHhcCC
Q psy14325 71 LAKQCGL 77 (103)
Q Consensus 71 L~~~~~l 77 (103)
|+++||+
T Consensus 103 La~r~g~ 109 (112)
T PF11287_consen 103 LAERHGF 109 (112)
T ss_pred HHHHcCC
Confidence 9999985
No 120
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.094 Score=35.35 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=62.8
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCC-c-EEEEecC--CC--c---cc------------------cCCC----CCCCCC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQD-F-EDIRIEK--DN--W---PA------------------LKPK----MPFGKM 51 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~-~-~~~~v~~--~~--~---~~------------------~~~~----~p~~~v 51 (103)
.+.||..-.||++.+..++=+.||++ . ....+.. .. | ++ |.+. +..-+|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 47899999999999999999999987 2 2222222 11 1 01 1111 234479
Q ss_pred ceEEEC--C-EEEeehHHHHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHH
Q psy14325 52 PVLEVD--G-KQLHQSAAICRYLAKQCG--------LNGKDAWEDLQIDIAFETFNDF 98 (103)
Q Consensus 52 P~l~~~--~-~~l~eS~aI~~yL~~~~~--------l~~~~~~~~~~~~~~~~~~~~~ 98 (103)
|||.|. . .+--||..|++-+...+. ++|. ..+.+++.|.+++-+-
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~ 186 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDT 186 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhccc
Confidence 999992 2 344799999999987662 6664 3477888888877543
No 121
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=95.78 E-value=0.035 Score=32.74 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=13.9
Q ss_pred CCCCceEEE--CCEEEeehHHHHHHHHHhc
Q psy14325 48 FGKMPVLEV--DGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 48 ~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 75 (103)
...-|-|.+ +|+.++|+.||+||+...+
T Consensus 33 d~~~~~L~~~~~gF~L~e~NAIvrYl~nDF 62 (122)
T PF09635_consen 33 DESGPLLKDKKSGFELFEPNAIVRYLANDF 62 (122)
T ss_dssp S--S--EEE-S--S----HHHHHHHHTT--
T ss_pred ccccceeeecCCceEEecccHHHHHHHhhc
Confidence 335588866 7899999999999999976
No 122
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=95.76 E-value=0.015 Score=32.69 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHH-HH
Q psy14325 68 CRYLAKQCGLNGKDAWEDLQIDIAFETFN-DF 98 (103)
Q Consensus 68 ~~yL~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 98 (103)
+|||++..|++|.++.+.+++++|++.+. ++
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~vd~~~d~~~~~l 32 (96)
T cd03200 1 ARFLYRLLGPAPNAPNAATNIDSWVDTAIFQL 32 (96)
T ss_pred CchHHHHhcccCCCchHHHHHHHHHHHHHHHH
Confidence 48999998899999999999999999775 54
No 123
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.22 E-value=0.2 Score=28.56 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=40.3
Q ss_pred CCccEEEeeCCCCC------cHHHHHHHHhcCCCcEEEEecCCC--ccccCC---------CCCCCCCceEEECCEEEee
Q psy14325 1 MPSYKLYYFPIKGL------AEPIRFILSYMEQDFEDIRIEKDN--WPALKP---------KMPFGKMPVLEVDGKQLHQ 63 (103)
Q Consensus 1 m~~~~Ly~~~~~~~------~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~---------~~p~~~vP~l~~~~~~l~e 63 (103)
|+ +++|....++. .+++..+|+.++|+|+.+.+..+. ...+++ .++..-.|-+..|+..+.+
T Consensus 1 m~-I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 1 MV-IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp -S-EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred CE-EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 45 88998877664 458999999999999998887742 112222 2334445778888888776
Q ss_pred hHHHHH
Q psy14325 64 SAAICR 69 (103)
Q Consensus 64 S~aI~~ 69 (103)
=..+..
T Consensus 80 ye~f~e 85 (99)
T PF04908_consen 80 YEDFEE 85 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 124
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=94.60 E-value=0.028 Score=32.40 Aligned_cols=30 Identities=20% Similarity=0.057 Sum_probs=23.5
Q ss_pred EeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 7 YYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 7 y~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
|+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhh
Confidence 788999999999999999999999987753
No 125
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.09 E-value=0.1 Score=37.79 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=49.0
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCC---CcEEEEecCCCccccCCCCCCCCCceEEECCEEEeeh----HHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQS----AAICRYLAK 73 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS----~aI~~yL~~ 73 (103)
.+++|..+.||+|-.+.-++....+ .++...++....+++........||.+..+|..+.+. ..++..+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 3789999999999987777654433 3455555655667777777888999999877665542 234555543
No 126
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.61 E-value=0.14 Score=37.19 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=44.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCC---cEEEEecCCCccccCCCCCCCCCceEEECCEEEee
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQD---FEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQ 63 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 63 (103)
.+++|..+.||||-.+.-++....+. ++...++....+++........||.+..+|..+++
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEe
Confidence 37899999999999887777654433 44444555556677777777899999987766655
No 127
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=93.44 E-value=0.43 Score=26.23 Aligned_cols=70 Identities=16% Similarity=0.310 Sum_probs=46.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHh----cCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE------eehHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL------HQSAAICRYL 71 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l------~eS~aI~~yL 71 (103)
+..++.+.|+.|...+-.+.. .+-++....++.+..+++.+...-..+|.+.. +|... .+...|..+|
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 100 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFI 100 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHH
Confidence 456777889999988755532 22267777777776666667777888998875 66543 2344566655
Q ss_pred HH
Q psy14325 72 AK 73 (103)
Q Consensus 72 ~~ 73 (103)
.+
T Consensus 101 ~~ 102 (103)
T PF00085_consen 101 EK 102 (103)
T ss_dssp HH
T ss_pred Hc
Confidence 44
No 128
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=92.75 E-value=0.69 Score=26.69 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=41.1
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCC---CcEEEEecCCCccccCCCCCCCCCceEEE--CCEEEee
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQLHQ 63 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l~e 63 (103)
+-.++.+.|+.|+.+.-.++...- ......++.++.++..+...-..+|++.. +|..+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 345667889999988877754221 24666777766666666677778999885 7876553
No 129
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.17 E-value=0.31 Score=35.79 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=40.1
Q ss_pred ccEEEeeCCCCCcHHHHHHH----Hhc-CCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEe
Q psy14325 3 SYKLYYFPIKGLAEPIRFIL----SYM-EQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLH 62 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l----~~~-gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 62 (103)
.+++|..++||+|-.+.-++ .+. +|..+.+. ....++..+...-..||.++.+|..++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~--~~~~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMID--VSHFPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEE--CcccHHHHHhCCceecCEEEECCEEEE
Confidence 37888999999998766544 344 45555444 444456666778889999998886543
No 130
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.95 E-value=0.32 Score=28.07 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=35.9
Q ss_pred cEEE-eeCCCCCcHHHHHHHHhcCCC---cEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLY-YFPIKGLAEPIRFILSYMEQD---FEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly-~~~~~~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+.++ +.++|++|..++-++++..-. .+...++.+..++......-..+|.+..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEE
Confidence 3444 457899999888888754432 3445555555556666677788998875
No 131
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.73 E-value=0.62 Score=29.94 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=37.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCC---CcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+++|+.++||+|..+..+++.... ......++.+..++..+...-..+|.++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEE
Confidence 567889999999988887765322 24444566666566666667778999886
No 132
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=91.47 E-value=1.2 Score=23.42 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=36.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHh-----cCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY-----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQ 60 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~ 60 (103)
+..++.+.|+.|....-.++. .++. ...++..+..++........+|+++. +|..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVK--FVKVDVDENPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCce--EEEEECCCChhHHHhcCcccccEEEEEECCEE
Confidence 456777889999988888876 4444 44445544445555566677998774 6653
No 133
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=91.44 E-value=1.8 Score=25.36 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=34.1
Q ss_pred cEEEeeCCCCCcHHHHHHH----HhcCCCcEEEEecCCCcc---------ccCCC----CCCCCCceEEE--CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFIL----SYMEQDFEDIRIEKDNWP---------ALKPK----MPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l----~~~gi~~~~~~v~~~~~~---------~~~~~----~p~~~vP~l~~--~~~~l 61 (103)
+..++.+.||+|+.+.=.| +..++++-.+.++.+... ++... .....+|.++. +|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 3456778999999865555 444566666666543211 22222 33456999885 77544
No 134
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=91.21 E-value=0.76 Score=25.45 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=37.0
Q ss_pred cEEEeeCCCCCcHHHHHHHHh----cCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
+.+|+.+.|+.|....-.++. .+-.+....++.++.+++.....-..+|++.. +|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 456677899999988777754 22235555666655555555555578998764 66544
No 135
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=90.82 E-value=1.3 Score=24.18 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=38.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc----CCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM----EQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
+..++.+.|+.|++..-.++.. +..+....++.+..+++.+...-..+|++.. +|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 3456778899999887766542 3456666677665555555555667998774 66544
No 136
>KOG0911|consensus
Probab=88.46 E-value=1.7 Score=28.44 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=46.8
Q ss_pred eCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEECCEEEeehHHHHH
Q psy14325 9 FPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVDGKQLHQSAAICR 69 (103)
Q Consensus 9 ~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~ 69 (103)
.|-|++++.+--+|+..|++|....|-.+. ....+..+-..+.|-|-.+|+-+....-|..
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~ 213 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKE 213 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHH
Confidence 567999999999999999999887776543 2344566778899999888887776654443
No 137
>PRK09381 trxA thioredoxin; Provisional
Probab=88.07 E-value=3.2 Score=23.27 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=36.4
Q ss_pred EEEeeCCCCCcHHHHHHHHh----cCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 5 KLYYFPIKGLAEPIRFILSY----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
..++.+.||.|+...-.++. .+-.+....++.+..+...+...-..+|.++. +|..+
T Consensus 26 v~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 26 VDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 45566789999977644432 22235666677766555555566778998774 66554
No 138
>KOG2824|consensus
Probab=87.45 E-value=1.3 Score=29.93 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=44.3
Q ss_pred CcHHHHHHHHhcCCCcEEEEecCCC--ccccC----CCCCCCCCceEEECCEEEeehHHHHHHH
Q psy14325 14 LAEPIRFILSYMEQDFEDIRIEKDN--WPALK----PKMPFGKMPVLEVDGKQLHQSAAICRYL 71 (103)
Q Consensus 14 ~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~----~~~p~~~vP~l~~~~~~l~eS~aI~~yL 71 (103)
.|..||.+|+-.++.|+++.|.++. .+|+. ...-.-.+|.+-.+|..|.....|.+--
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~Ln 212 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLN 212 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhh
Confidence 4789999999999999999999865 22322 2234668997777999998888777643
No 139
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=87.20 E-value=2.1 Score=24.41 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=34.5
Q ss_pred cEEEeeCCCCCcHHHHHHHH-----hcCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILS-----YMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQ 60 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~ 60 (103)
+..++.+.|+.|+...-.++ ..+..+....++.+..++......-..+|.+.. +|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEE
Confidence 45567788999986654432 233334555666555445555556678998773 6654
No 140
>PTZ00051 thioredoxin; Provisional
Probab=87.14 E-value=1.8 Score=23.68 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=35.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc---CCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM---EQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~---gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
+..++.+.|+.|+...-.++.. ...+....++.++..++.+...-..+|.++. +|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 3466778899999876665542 2234455556555445555556678998764 66443
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=87.09 E-value=1.9 Score=27.68 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=37.3
Q ss_pred cEEEee---CCCCCcHHHHHHHHhcC-----CCcEEEEecCCCccccCCCCCCCCCceEEE--CCEE
Q psy14325 4 YKLYYF---PIKGLAEPIRFILSYME-----QDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQ 60 (103)
Q Consensus 4 ~~Ly~~---~~~~~~~~vr~~l~~~g-----i~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~ 60 (103)
+.+|+. ++|+.|..+.-++++.. +.+....++.++.++..+...-..+|.+.. +|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCee
Confidence 556766 78999998888776553 233344444445556666677788998875 5543
No 142
>PHA02278 thioredoxin-like protein
Probab=85.04 E-value=3 Score=23.74 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=33.2
Q ss_pred EEeeCCCCCcHHHHHHHHhc----CCCcEEEEecCCCc----cccCCCCCCCCCceEEE--CCEEE
Q psy14325 6 LYYFPIKGLAEPIRFILSYM----EQDFEDIRIEKDNW----PALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~----gi~~~~~~v~~~~~----~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
-|+.+.|+.|+...=.++.. +.......++.+.. ++..+...-..+|++.. +|..+
T Consensus 20 ~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 20 MITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 45667899999777555432 22223444444332 34555666778999885 77655
No 143
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=84.80 E-value=4.5 Score=21.84 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=33.8
Q ss_pred EEEeeCCCCCcHHHHHHHHh----cCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCE
Q psy14325 5 KLYYFPIKGLAEPIRFILSY----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGK 59 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~ 59 (103)
-.++.+.|+.|+...-.++. .+-.+....++.+..+++.+...-..+|.+.. +|.
T Consensus 19 i~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 19 VDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 34556778888877655543 23235666666665555555556668998774 554
No 144
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=84.42 E-value=2.1 Score=24.99 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=38.1
Q ss_pred EEeeCCCCCcHHHHHHHHhcCCC----cEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 6 LYYFPIKGLAEPIRFILSYMEQD----FEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
-++.+.|+.|+.+.-++++.--. .....|+.+..+++.....-..+|.+.. +|..+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 36677899999776666433322 3456677777677777777778999885 77654
No 145
>PRK10996 thioredoxin 2; Provisional
Probab=82.73 E-value=7.9 Score=23.06 Aligned_cols=58 Identities=10% Similarity=0.235 Sum_probs=37.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHh----cCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
+..++.+.|+.|+...-.+.. .+-.+....++.+..+++.+...-..+|.++. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 445667789999876544433 33346666677766666666666678998774 67654
No 146
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=82.59 E-value=5.9 Score=22.94 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=29.8
Q ss_pred cEEEeeCCCCCcHHHHHHHHh------cCCCcEEEEecCCCccccCCCCCCC-CCceEEE---CCEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY------MEQDFEDIRIEKDNWPALKPKMPFG-KMPVLEV---DGKQ 60 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~------~gi~~~~~~v~~~~~~~~~~~~p~~-~vP~l~~---~~~~ 60 (103)
+..++.+.|+.|+...-.+.. .+..|..+.++.+..+.-...+..| .+|.++. +|..
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 344667789999987665554 2223444444433211112233443 4998764 5544
No 147
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=82.35 E-value=5.1 Score=22.80 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=36.6
Q ss_pred EEEeeCCCCCcHHHHHHHHhcCCC---cEEEEecCCCccccCCCCCCCCCceEEE--CCEEEeeh
Q psy14325 5 KLYYFPIKGLAEPIRFILSYMEQD---FEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQLHQS 64 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l~eS 64 (103)
..++.+.|+.|..+.-.++...-. .....++.++. ++.....-..+|+++. +|..+..-
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 456778899999877666542222 34445555443 5555556678998875 77665443
No 148
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=82.27 E-value=6.1 Score=21.44 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=36.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcC----CCcEEEEecCCCccccCCCCCCCCCceEEE--CCEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYME----QDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQ 60 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~g----i~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~ 60 (103)
+..++.+.|+.|+...-.++... -.+....++.+..+++.+...-..+|+++. +|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 34456678999997766665322 235556666666556655566678998774 6654
No 149
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=81.29 E-value=2.4 Score=24.52 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=21.3
Q ss_pred CceEE-ECCEEEeehHHHHHHHHHhcC
Q psy14325 51 MPVLE-VDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 51 vP~l~-~~~~~l~eS~aI~~yL~~~~~ 76 (103)
.|.+. .+|.++++|..|+++.+.++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46555 499999999999999988763
No 150
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=80.20 E-value=5.2 Score=22.08 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=34.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCC----cEEEEecCCCccccCCCCCCCCCceEEE--CCE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQD----FEDIRIEKDNWPALKPKMPFGKMPVLEV--DGK 59 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~ 59 (103)
+..++.+.|+.|+...-.++...-. +....++.++.+++.+...-..+|.+.. +|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 3456778899998766555432222 4455666665555545556678898764 553
No 151
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=79.80 E-value=2.5 Score=23.51 Aligned_cols=52 Identities=10% Similarity=-0.017 Sum_probs=31.3
Q ss_pred cEEEeeCCCCCcHHHHHHH--------HhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFIL--------SYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l--------~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~ 56 (103)
+..|+.+.|+.|....-.+ ...+ .+....++.+. .+++.+...-..+|++..
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 4567778899999876433 1222 45555556543 234555556677997664
No 152
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=79.21 E-value=4.4 Score=24.72 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=46.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCC----CCCCCCceEEECCEEE---eehHHHHHHHHHhc
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPK----MPFGKMPVLEVDGKQL---HQSAAICRYLAKQC 75 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~----~p~~~vP~l~~~~~~l---~eS~aI~~yL~~~~ 75 (103)
.+..|+.|.|++|..=--.|+.+|..+..+..+. ....++. .-....=+.+.+|..+ .-..+|.+.|+++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d--~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD--FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc--HHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 4789999999999998889998888887766542 1111111 1112223445556444 34678999999986
No 153
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=78.32 E-value=8.3 Score=23.63 Aligned_cols=74 Identities=9% Similarity=0.165 Sum_probs=40.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc-----CCCcEEEEecCCCccccCCCCC------CCCCceEEE--CCEEEeehHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM-----EQDFEDIRIEKDNWPALKPKMP------FGKMPVLEV--DGKQLHQSAAICRY 70 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~p------~~~vP~l~~--~~~~l~eS~aI~~y 70 (103)
+..|+.+.|+.|....-.++.. +-.+....|+.++.++..+... -.++|+++. +|+.+..-.. |
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G---~ 127 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPY---Y 127 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEec---c
Confidence 4456777899998776555322 2335566677665444333222 245898775 7766543322 4
Q ss_pred HHHhcCCCCC
Q psy14325 71 LAKQCGLNGK 80 (103)
Q Consensus 71 L~~~~~l~~~ 80 (103)
...+.++.|.
T Consensus 128 ~~~~~~~~~~ 137 (152)
T cd02962 128 NDSKGRAVPF 137 (152)
T ss_pred ccCccccccc
Confidence 4444444443
No 154
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=77.84 E-value=7.2 Score=21.41 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=32.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc-----CCCcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM-----EQDFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+..++.+.|+.|....-.+... +..+....++.++.+++.+...-..+|.+..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 3456778899998766554322 3345555666555455555556677888774
No 155
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=77.65 E-value=3.5 Score=24.01 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=40.9
Q ss_pred cEEEeeC--CCCCcHHHHHHHHhcCCCc----EEEEecCCCccccCCCCCCCCCceEEE--CCEEEee
Q psy14325 4 YKLYYFP--IKGLAEPIRFILSYMEQDF----EDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQLHQ 63 (103)
Q Consensus 4 ~~Ly~~~--~~~~~~~vr~~l~~~gi~~----~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l~e 63 (103)
+.+|+.. .||-|..+.-+|.+.--.| ....++.++.++......-..+|.++. +|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3455555 3999998887776544444 344666666666777777888999885 8876644
No 156
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=75.88 E-value=3.6 Score=22.81 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=32.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCC----CcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQ----DFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi----~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+..|+.+.|+.|+...-.++...- .+....++.+..+++.+...-..+|.+..
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 445677889999876555543222 24555666665555555556678898774
No 157
>KOG0190|consensus
Probab=75.75 E-value=14 Score=27.16 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=49.4
Q ss_pred cEEEeeCCCCCcHH-------HHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEE------EeehHHHH
Q psy14325 4 YKLYYFPIKGLAEP-------IRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQ------LHQSAAIC 68 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~-------vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~------l~eS~aI~ 68 (103)
+.-||.|+|+.|.+ +--.|.+.|-+.....||.....++-...-....|+|.. +|.. --+...|+
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv 125 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIV 125 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHH
Confidence 35678899998874 445566666688888888755444444444555677665 4432 35678899
Q ss_pred HHHHHhcC
Q psy14325 69 RYLAKQCG 76 (103)
Q Consensus 69 ~yL~~~~~ 76 (103)
.||-.+.|
T Consensus 126 ~wl~kq~g 133 (493)
T KOG0190|consen 126 KWLKKQSG 133 (493)
T ss_pred HHHHhccC
Confidence 99999875
No 158
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=74.25 E-value=17 Score=22.07 Aligned_cols=73 Identities=18% Similarity=-0.007 Sum_probs=45.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC--CCccccCCCCCCC----CCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK--DNWPALKPKMPFG----KMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~--~~~~~~~~~~p~~----~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
++.++|.-.|+.|-..--+|......-..+..+. +...+.++..+.. ..=+++.+|..+.+|.|+++-+...-
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 4566777779988876666666666654444444 3322333332222 11233448999999999999887764
No 159
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=74.12 E-value=13 Score=21.91 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=36.9
Q ss_pred EEeeCCCCCcHHHHH-H------HHhcCCCcEEEEecCCCccccCC--------CCCCCCCceEEE---CCEEEeeh
Q psy14325 6 LYYFPIKGLAEPIRF-I------LSYMEQDFEDIRIEKDNWPALKP--------KMPFGKMPVLEV---DGKQLHQS 64 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~-~------l~~~gi~~~~~~v~~~~~~~~~~--------~~p~~~vP~l~~---~~~~l~eS 64 (103)
.++...|+.|++..- + ....+-.|..+.++.++.++..+ .+..+..|+++. +|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 356678999987742 2 22334467888888765443321 234667998774 67887776
No 160
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=73.24 E-value=6.1 Score=25.16 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=26.8
Q ss_pred CccEEEeeCCCCCcHH----HHHHHHhcCCCcEEEEecC
Q psy14325 2 PSYKLYYFPIKGLAEP----IRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 2 ~~~~Ly~~~~~~~~~~----vr~~l~~~gi~~~~~~v~~ 36 (103)
|.+.+|+...||+|.- ++-++...+++++.+++..
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 5688999999999985 4445566788888888754
No 161
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=73.15 E-value=7.9 Score=22.28 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=12.4
Q ss_pred cEEEeeCCCCCcHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRF 20 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~ 20 (103)
+..++.+.|++|++..-
T Consensus 18 lv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 18 LLLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 45567778999998753
No 162
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=73.03 E-value=10 Score=20.18 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=34.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc------CCCcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM------EQDFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~------gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+.+|+.+.|+.|....-.+... +-.+....++.+...++.+...-..+|.+..
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 4566777899999877766442 3345556666555455555556678998764
No 163
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.72 E-value=9.1 Score=25.15 Aligned_cols=59 Identities=14% Similarity=-0.024 Sum_probs=42.3
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEE
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQL 61 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l 61 (103)
++++|.+..|..|...--.|+.+|+--....++.+..+...-.+.--.+|.+-.||+.+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELV 70 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEE
Confidence 47899999999999999999999998766666655533222334455688777666543
No 164
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=71.40 E-value=22 Score=22.19 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=34.6
Q ss_pred EEeeCCCCCcHHHHHHHHhc---CCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEEee
Q psy14325 6 LYYFPIKGLAEPIRFILSYM---EQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQLHQ 63 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~---gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l~e 63 (103)
.+|.+.|+.|..+--.|... --.+....|+.+.. +.....+-..+|++.. +|..+..
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 45667899998665444322 12345555655543 4455667778998875 7766543
No 165
>PLN00064 photosystem II protein Psb27; Provisional
Probab=70.45 E-value=8.5 Score=23.97 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=41.8
Q ss_pred ceEEE-CCEEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy14325 52 PVLEV-DGKQLHQSAAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQRNN 103 (103)
Q Consensus 52 P~l~~-~~~~l~eS~aI~~yL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (103)
|..-. +|....|+.+++.-|.....+...++.....+.+.-+.++||..+|.
T Consensus 57 ~a~a~~~g~Y~~DT~aVi~~lr~tI~L~~ddp~~a~a~aeaR~~iNdyvSrYR 109 (166)
T PLN00064 57 PAFAASDEEYVKETKDVIGKVRSTINMDKTDPNVADAVAELRETSNSWVAKYR 109 (166)
T ss_pred chhhccCCChHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 44444 77889999999999999888777777767777888889999998883
No 166
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=70.13 E-value=3.1 Score=25.96 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=13.2
Q ss_pred eehHHHHHHHHHhcCCCCC
Q psy14325 62 HQSAAICRYLAKQCGLNGK 80 (103)
Q Consensus 62 ~eS~aI~~yL~~~~~l~~~ 80 (103)
-|-.+|++||++.+||.|.
T Consensus 54 eer~avVkYLAd~~GLap~ 72 (167)
T PF09098_consen 54 EERRAVVKYLADTQGLAPS 72 (167)
T ss_dssp HHHHHHHHHHHHHT---CG
T ss_pred HHHHHHHHHHHHccCCCch
Confidence 3568999999999987663
No 167
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=69.37 E-value=8.3 Score=21.56 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=34.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcC------C----CcEEEEecCCCccccCCCCCCCCCceEEE--CCE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYME------Q----DFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGK 59 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~g------i----~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~ 59 (103)
+..++.+.|+.|+...-.++... . .+....++.+..++..+...-..+|.+.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 34567788999997776664221 1 24445566555555555566678898774 554
No 168
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=69.13 E-value=30 Score=24.43 Aligned_cols=73 Identities=18% Similarity=0.333 Sum_probs=45.1
Q ss_pred cEEEeeCCCCCcHHHHHHHH-------hcCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEE-E------eehHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILS-------YMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQ-L------HQSAAI 67 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~-------~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~-l------~eS~aI 67 (103)
+.+++.+.|+.|....-.+. ..+-.+....++.++.++..+...-..+|.+.. +|.. + .+..+|
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 101 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGI 101 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHH
Confidence 45677788999997653332 223336666667665555555555566887764 4432 1 356778
Q ss_pred HHHHHHhcC
Q psy14325 68 CRYLAKQCG 76 (103)
Q Consensus 68 ~~yL~~~~~ 76 (103)
..++.+..+
T Consensus 102 ~~~i~~~~~ 110 (462)
T TIGR01130 102 VKYMKKQSG 110 (462)
T ss_pred HHHHHHhcC
Confidence 888887753
No 169
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=67.98 E-value=17 Score=19.66 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=32.6
Q ss_pred cEEEeeCCCCCcHHHHHHHH-----hcC--CCcEEEEecCCCccccCCCCCCCCCceEEE--CCE
Q psy14325 4 YKLYYFPIKGLAEPIRFILS-----YME--QDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGK 59 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~-----~~g--i~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~ 59 (103)
+..++.+.|+.|+...-.+. ..+ -.+....++.+..++..+...-..+|.+.. +|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 34566778998886644332 222 235556666655444444555677998663 553
No 170
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=67.92 E-value=18 Score=19.68 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=30.7
Q ss_pred cEEEeeCCCCCcHHHHHHH----HhcC--CCcEEEEecCCC--ccccCCCCCCCCCceEEE--CCE
Q psy14325 4 YKLYYFPIKGLAEPIRFIL----SYME--QDFEDIRIEKDN--WPALKPKMPFGKMPVLEV--DGK 59 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l----~~~g--i~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~--~~~ 59 (103)
+.+|+.+.|+.|+...-.+ +..+ -.+....++... .+++.+...-..+|.++. +|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 4466677899999774333 2211 223444445433 444544555567898764 554
No 171
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=66.92 E-value=6.9 Score=24.12 Aligned_cols=36 Identities=8% Similarity=-0.026 Sum_probs=26.6
Q ss_pred ccEEEeeCCCCCcHHH----HHHHHhc-CCCcEEEEecCCC
Q psy14325 3 SYKLYYFPIKGLAEPI----RFILSYM-EQDFEDIRIEKDN 38 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~v----r~~l~~~-gi~~~~~~v~~~~ 38 (103)
++++|+...||+|... +-+++.. ++.++.+++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 3678888999999844 4444455 8999998887643
No 172
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=66.56 E-value=24 Score=20.71 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=29.9
Q ss_pred CCCCCcHHHHHHH----HhcCCCcEEEEecCCCc-------cccCCCCCCC-CCceEEE--CCEEEee
Q psy14325 10 PIKGLAEPIRFIL----SYMEQDFEDIRIEKDNW-------PALKPKMPFG-KMPVLEV--DGKQLHQ 63 (103)
Q Consensus 10 ~~~~~~~~vr~~l----~~~gi~~~~~~v~~~~~-------~~~~~~~p~~-~vP~l~~--~~~~l~e 63 (103)
+.||.|+.+.-++ ...+-.+....|+.++. .++.....-. .+|++.. +|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 6799999665444 33332355566665432 2444433334 7998875 5554444
No 173
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=66.29 E-value=12 Score=17.27 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.1
Q ss_pred CCCCCceEEECCEEEeehHHHHHHHH
Q psy14325 47 PFGKMPVLEVDGKQLHQSAAICRYLA 72 (103)
Q Consensus 47 p~~~vP~l~~~~~~l~eS~aI~~yL~ 72 (103)
-.|.+|....++..++....|.+|+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 45778887778888999999988875
No 174
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=64.92 E-value=37 Score=22.27 Aligned_cols=72 Identities=10% Similarity=0.193 Sum_probs=44.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc----CCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE------eehHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM----EQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL------HQSAAICRYL 71 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l------~eS~aI~~yL 71 (103)
+..+|.+.|+.|+...-.++.. +-.+....++.++.++..+...-..+|.+.. +|..+ .....|.+++
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi 135 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFA 135 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHH
Confidence 3456778899998665554332 2124444555555555555556678898764 66543 2356788888
Q ss_pred HHhc
Q psy14325 72 AKQC 75 (103)
Q Consensus 72 ~~~~ 75 (103)
.+.+
T Consensus 136 ~~~~ 139 (224)
T PTZ00443 136 LGDF 139 (224)
T ss_pred HHHH
Confidence 8876
No 175
>PTZ00102 disulphide isomerase; Provisional
Probab=64.80 E-value=41 Score=24.05 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=45.4
Q ss_pred cEEEeeCCCCCcHHHHHHH-------HhcCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE-----eehHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFIL-------SYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL-----HQSAAICR 69 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l-------~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l-----~eS~aI~~ 69 (103)
+..++.+.|+.|.+..-.+ +..+-++....++.....+..+...-..+|.+.. +|..+ .....|..
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l~~ 132 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGIVS 132 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCHHHHHH
Confidence 4567788999998664322 2234456666677655555544555567887764 44322 34567889
Q ss_pred HHHHhcC
Q psy14325 70 YLAKQCG 76 (103)
Q Consensus 70 yL~~~~~ 76 (103)
|+.+..+
T Consensus 133 ~l~~~~~ 139 (477)
T PTZ00102 133 WIKKLTG 139 (477)
T ss_pred HHHHhhC
Confidence 9988754
No 176
>PRK09266 hypothetical protein; Provisional
Probab=64.46 E-value=12 Score=24.87 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=39.4
Q ss_pred HHHhcCCCcEEEEecCCC---cc-ccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 21 ILSYMEQDFEDIRIEKDN---WP-ALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~---~~-~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
.++..|+++++..++.++ .+ -|.-..-.|-+||-..++..+.+...+.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 456779999998888643 22 34555667899999988877765567777776655
No 177
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=64.39 E-value=20 Score=19.79 Aligned_cols=53 Identities=8% Similarity=0.206 Sum_probs=31.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHh-------cCCCcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY-------MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~-------~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+..|+.+.|+.|++..-.+.. .+..+....++....++..+...-..+|.+..
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 345666789999966544432 13344455555554455555555667898764
No 178
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=64.27 E-value=4.6 Score=20.77 Aligned_cols=31 Identities=23% Similarity=-0.124 Sum_probs=20.2
Q ss_pred EEEeeCCCCCcHHHHHHHHhcCCCcEEEEec
Q psy14325 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIRIE 35 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 35 (103)
++|.+....-+..++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6788887778999999999999999876543
No 179
>PHA03075 glutaredoxin-like protein; Provisional
Probab=64.11 E-value=10 Score=22.45 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=30.7
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
.+.|++=|.|+-|..+.-+|.+..-+|+...|+.
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 5789999999999999999999999999988875
No 180
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=63.18 E-value=9.3 Score=22.08 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=32.6
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCC----cEEEEecCCCccccC-CCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQD----FEDIRIEKDNWPALK-PKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~-~~~p~~~vP~l~~ 56 (103)
+..||.+.|+.|+...-.+++..-. .....|+.+..++.. +...-..+|.+..
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~l 90 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHL 90 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEE
Confidence 4467788999999887766654332 344555555444443 2444467888774
No 181
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=63.09 E-value=18 Score=20.00 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=30.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc----CCCcEEEEecCCC--ccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM----EQDFEDIRIEKDN--WPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~----gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~ 56 (103)
+..++.+.|+.|+...-.+... +-.+....++.+. .+++.....-..+|.+..
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 4566778899998765444332 2223444455443 444544556667898774
No 182
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=62.97 E-value=23 Score=21.19 Aligned_cols=58 Identities=10% Similarity=0.204 Sum_probs=31.6
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc----CCCcEEEEecCCC--ccccCCCCCCCCCceEEE---CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM----EQDFEDIRIEKDN--WPALKPKMPFGKMPVLEV---DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~----gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~---~~~~l 61 (103)
+..|+.+.|+.|....-.+... +-.+..+.++.+. ..++.....-..+|.++. +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 3445667899998766555432 2223444444432 234444555667997663 46544
No 183
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=62.24 E-value=22 Score=18.74 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 49 GKMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 49 ~~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
.+=||+.-+| ..+|-.+|.+||.+..
T Consensus 14 M~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 14 MRDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp -SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hhCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 3568888777 8899999999999944
No 184
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=62.19 E-value=11 Score=24.03 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=17.8
Q ss_pred CCEEEeehHHHHHHHHHhcC
Q psy14325 57 DGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 57 ~~~~l~eS~aI~~yL~~~~~ 76 (103)
.+..|.||..|.+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45679999999999999987
No 185
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=62.19 E-value=25 Score=19.45 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=32.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHh----cC-CCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY----ME-QDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~----~g-i~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
+..|+.+.|+.|+...-.++. .+ -......++.+ .++..+...-..+|.+.. +|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 345667789999977655542 22 12334444444 334445555667897664 66544
No 186
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=62.12 E-value=19 Score=19.53 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=30.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHh----cCCCcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY----MEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+.+++.+.|+.|+...-.+.. ..-.+....++.++.++..+...-..+|.+..
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 345666788888876543322 22235555566655555544445567997764
No 187
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.39 E-value=23 Score=24.44 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=52.2
Q ss_pred cEEEeeCCCCCcHHHHHHHH----hcCCCcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE------eehHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILS----YMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL------HQSAAICRYL 71 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~----~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l------~eS~aI~~yL 71 (103)
+.+++.|.|+.|....-.|+ +.+=.|....|+.+..+.......-..+|+++- +|..+ ..-..|-++|
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~l 126 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFL 126 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHH
Confidence 45666778888886655553 445568888888888888888888889998774 77554 2335788888
Q ss_pred HHhcC
Q psy14325 72 AKQCG 76 (103)
Q Consensus 72 ~~~~~ 76 (103)
++..+
T Consensus 127 d~~~~ 131 (304)
T COG3118 127 DKVLP 131 (304)
T ss_pred HHhcC
Confidence 87653
No 188
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=61.18 E-value=10 Score=24.12 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=32.9
Q ss_pred EEeeCCCCCcHHHHHHHHhcCC---CcEEEEecCCCccccCCCCCCCCCceEEE--CCEEEeeh
Q psy14325 6 LYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQLHQS 64 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l~eS 64 (103)
-+|.++|+.|..+--.|...-- ...+..++.++ .....+-..+|++.. +|..+..-
T Consensus 108 ~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 108 HLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPDKNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCCCCCCEEEEEECCEEEEEE
Confidence 3556789999877555543322 23444444432 134567788999875 77655443
No 189
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=60.88 E-value=15 Score=23.06 Aligned_cols=32 Identities=6% Similarity=-0.109 Sum_probs=22.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHh--cCCCcEEEEec
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY--MEQDFEDIRIE 35 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~--~gi~~~~~~v~ 35 (103)
+.+|..+.||+|++..-.+.. .++.+....+.
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p 114 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVP 114 (197)
T ss_pred EEEEECCCCccHHHHHHHHhhccCceEEEEEEcC
Confidence 556777899999999988874 44444544444
No 190
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=60.70 E-value=17 Score=21.97 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=35.5
Q ss_pred CCEEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy14325 57 DGKQLHQSAAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQRN 102 (103)
Q Consensus 57 ~~~~l~eS~aI~~yL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (103)
.|....|+.+++.-|-....+...++.....+.+..+.++|+..+|
T Consensus 34 tg~Y~~DT~~Vi~tlr~~i~lpkd~p~~~~a~~~ar~~indyvsrY 79 (135)
T TIGR03044 34 TGDYVEDTLAVIQTLREAIDLPDDDPNKSEAQAEARQLINDYISRY 79 (135)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 5667788999999998887775555655666777788888888877
No 191
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=60.56 E-value=19 Score=19.50 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=33.4
Q ss_pred cEEEeeCCCCCcHHHHHHHHh----cC--CCcEEEEecCCC-ccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY----ME--QDFEDIRIEKDN-WPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~----~g--i~~~~~~v~~~~-~~~~~~~~p~~~vP~l~~ 56 (103)
+..++.+.|+.|+...-.+.. .+ -.+....++... .+++.+...-..+|.+..
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 456777889999855444432 22 235666666666 566666666678998764
No 192
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=60.44 E-value=27 Score=19.72 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=39.7
Q ss_pred EEeeCCCCCcHHHHHHHHhcCCC--cEEEEecCCCcccc---CCC---CCCCCCceEEECCE-EEeehHHHHHHHHHh
Q psy14325 6 LYYFPIKGLAEPIRFILSYMEQD--FEDIRIEKDNWPAL---KPK---MPFGKMPVLEVDGK-QLHQSAAICRYLAKQ 74 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~gi~--~~~~~v~~~~~~~~---~~~---~p~~~vP~l~~~~~-~l~eS~aI~~yL~~~ 74 (103)
|+|...||.|....-.++..+.. ++.+.+......+. ... .....+-+ ..+|. ....+.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 35566799999888888777653 44444422211111 111 12223333 44665 999999998886664
No 193
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=59.38 E-value=27 Score=20.46 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=24.5
Q ss_pred CcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 28 DFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 28 ~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
.+....|+.+..+++.+...-..+|+|.. +|..+
T Consensus 65 ~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v 100 (120)
T cd03065 65 GIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVI 100 (120)
T ss_pred CCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEE
Confidence 46666777766667777777888999875 77643
No 194
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=59.14 E-value=25 Score=18.85 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=30.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHh-----cCC-CcEEEEecCCCccccCCCCCCCCCceEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY-----MEQ-DFEDIRIEKDNWPALKPKMPFGKMPVLE 55 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~-----~gi-~~~~~~v~~~~~~~~~~~~p~~~vP~l~ 55 (103)
+..|+.+.|+.|+...-.++. .+- .+....++.+..+++.+...-..+|.+.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEE
Confidence 567788889999875444432 221 2444444544444454455566799775
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=58.93 E-value=13 Score=19.55 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=17.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM 25 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~ 25 (103)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4577888899999888777653
No 196
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.45 E-value=12 Score=20.24 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 12 KGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 12 ~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
-++++|+.-+|+..|++|+..+-..
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCCC
Confidence 4789999999999999999766443
No 197
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=57.54 E-value=32 Score=19.23 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=31.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHh-----cCCCcEEEEecCCC-ccccC-CCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY-----MEQDFEDIRIEKDN-WPALK-PKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~~-~~~~~-~~~p~~~vP~l~~ 56 (103)
+..|+.+.|+.|+...-.+.. ++..+....++.+. ...+. +...-..+|.+..
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 556778889999977654533 33345555555543 22332 2356667998763
No 198
>PF12728 HTH_17: Helix-turn-helix domain
Probab=55.98 E-value=23 Score=16.93 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 47 PFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 47 p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
-.|.+|.+..++...+.-..|.+|+.++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 4668888888888999999999998764
No 199
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.82 E-value=21 Score=22.22 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=22.0
Q ss_pred cEEEeeCCCCCcHHHH----HHHHhc----CCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIR----FILSYM----EQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr----~~l~~~----gi~~~~~~v~~ 36 (103)
+++|+...||+|.-.. -+++.. ++.++.+.+..
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4678888999999444 444444 56667666643
No 200
>KOG0907|consensus
Probab=55.01 E-value=29 Score=19.86 Aligned_cols=58 Identities=12% Similarity=0.310 Sum_probs=37.4
Q ss_pred EeeCCCCCcHHHHHHHHhcCCCc---EEEEecCCCccccCCCCCCCCCceEEE--CCEEEeeh
Q psy14325 7 YYFPIKGLAEPIRFILSYMEQDF---EDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQLHQS 64 (103)
Q Consensus 7 y~~~~~~~~~~vr~~l~~~gi~~---~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l~eS 64 (103)
|+...||.|..+.=.++..-..| ....++.+...++.....-..+|+++. +|..+.+.
T Consensus 28 F~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~ 90 (106)
T KOG0907|consen 28 FYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEV 90 (106)
T ss_pred EECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEE
Confidence 56678999998776666544444 334444444555666667778999885 77655443
No 201
>PRK13947 shikimate kinase; Provisional
Probab=52.94 E-value=18 Score=21.88 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=28.0
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEE
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDI 32 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~ 32 (103)
|..+.|.+.++|+-+.-.+.+.+..|.+|-..
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 77789999999999999999999999987443
No 202
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=52.82 E-value=22 Score=23.54 Aligned_cols=31 Identities=6% Similarity=-0.060 Sum_probs=20.5
Q ss_pred cEEEeeCCCCCcHHHHHHHHh---cC-CCcEEEEe
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY---ME-QDFEDIRI 34 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~---~g-i~~~~~~v 34 (103)
+..|..+.||||++..--+.. .| +.+....+
T Consensus 121 I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 556677889999998776642 33 55554443
No 203
>KOG0910|consensus
Probab=51.85 E-value=55 Score=20.21 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=40.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCC----cEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQD----FEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
+.=|+.+.|+.|+.+.=.|++.--+ ++.-.++.+...++.....-.-+|+++. +|+..
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 4456778899999887777765544 4555666666667766777778998774 77665
No 204
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=51.77 E-value=15 Score=19.45 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEE
Q psy14325 12 KGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQL 61 (103)
Q Consensus 12 ~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l 61 (103)
.....+++-++.+.+||.... .++|+|.+++..+
T Consensus 17 ~~~~k~lKk~~~e~kIP~~~R----------------~~~Pll~~~~~iv 50 (74)
T PF11734_consen 17 RGGSKKLKKLFQEAKIPPWQR----------------DRLPLLCDGGEIV 50 (74)
T ss_dssp SSSEEEHHHHHHHCT--HHHC----------------CCSEEEEETTEEE
T ss_pred CCCCchHHHHHHHcCCCHHHH----------------CcEEEEEECCEEE
Confidence 344577777888888875532 2678888877654
No 205
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=51.60 E-value=25 Score=18.85 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=34.5
Q ss_pred cEEEeeCCCCCcHHHH----HHH-HhcCCCcEEEEecCCCccccCCCCCCCCCceEE
Q psy14325 4 YKLYYFPIKGLAEPIR----FIL-SYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLE 55 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr----~~l-~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~ 55 (103)
.+||-...+|.+.+.- -++ ++.+-+|+...+|..+.++......---.|+|+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 5677777667776543 333 345778999999988777666555555556655
No 206
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=51.58 E-value=25 Score=21.58 Aligned_cols=32 Identities=6% Similarity=-0.108 Sum_probs=22.3
Q ss_pred cEEEeeCCCCCcHHH----HHHHHhcCCCcEEEEec
Q psy14325 4 YKLYYFPIKGLAEPI----RFILSYMEQDFEDIRIE 35 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~v----r~~l~~~gi~~~~~~v~ 35 (103)
+++|+...||+|... +-+....++.++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 467888899999864 34444557777777664
No 207
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=50.96 E-value=22 Score=23.14 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHhcCCCcEEEEecCCC---cc-ccCCCCCCCCCceEEECCEEE--eehHHHHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN---WP-ALKPKMPFGKMPVLEVDGKQL--HQSAAICRYLAK 73 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~---~~-~~~~~~p~~~vP~l~~~~~~l--~eS~aI~~yL~~ 73 (103)
.++..|+++++..+..++ .+ -|.--...|-+|+-..++..+ .....+.+.|.+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 567789999998887643 22 345555678899999887766 344566666644
No 208
>KOG3425|consensus
Probab=50.78 E-value=53 Score=19.65 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=37.6
Q ss_pred CCCCCcHHH----HHHHHhcCCCcEEEEecCCCccccCC-CCCC-------CCCceEEE-C--CEEEeehHHHHHHHH
Q psy14325 10 PIKGLAEPI----RFILSYMEQDFEDIRIEKDNWPALKP-KMPF-------GKMPVLEV-D--GKQLHQSAAICRYLA 72 (103)
Q Consensus 10 ~~~~~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~-~~p~-------~~vP~l~~-~--~~~l~eS~aI~~yL~ 72 (103)
+.||.|.++ +-+|++++-+...+.+..+..+.++. .||+ --||.|.- + +..+.+...--.+|.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 468888854 56677788888888888765443332 2232 45788774 4 244555544444443
No 209
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=49.75 E-value=27 Score=18.31 Aligned_cols=32 Identities=19% Similarity=0.037 Sum_probs=26.3
Q ss_pred EEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
-+..|+....+.++.-+|+..|++++.+++..
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 35567777889999999999999999887653
No 210
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=49.44 E-value=39 Score=19.38 Aligned_cols=29 Identities=10% Similarity=-0.137 Sum_probs=21.2
Q ss_pred EEEeeCCCCCcHHHHHHHHhcCCCcEEEE
Q psy14325 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIR 33 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~ 33 (103)
.|-..+..|...-++.+++++|+|++...
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 34444556788888888889999888654
No 211
>PF14420 Clr5: Clr5 domain
Probab=48.93 E-value=34 Score=16.95 Aligned_cols=27 Identities=4% Similarity=0.076 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH
Q psy14325 65 AAICRYLAKQCGLNGKDAWEDLQIDIA 91 (103)
Q Consensus 65 ~aI~~yL~~~~~l~~~~~~~~~~~~~~ 91 (103)
..|++++.+.+|+......-+.+...|
T Consensus 24 ~~v~~~M~~~~~F~at~rqy~~r~~~W 50 (54)
T PF14420_consen 24 EEVMEIMKEEHGFKATKRQYKRRFKKW 50 (54)
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 468889999999887655555555444
No 212
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=48.37 E-value=16 Score=24.47 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=36.4
Q ss_pred HHHhcCCCcEEEEecCCC---cc-ccCCCCCCCCCceEEECCEEE----eehHHHHHHHHHh
Q psy14325 21 ILSYMEQDFEDIRIEKDN---WP-ALKPKMPFGKMPVLEVDGKQL----HQSAAICRYLAKQ 74 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~---~~-~~~~~~p~~~vP~l~~~~~~l----~eS~aI~~yL~~~ 74 (103)
+++..|+++++..+..++ .+ -|.--...|-+||-..++..+ .....|.+.|.+.
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~ 272 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDL 272 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHH
Confidence 567889999999888743 22 355556678899999877665 3445555555443
No 213
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=48.37 E-value=29 Score=20.48 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy14325 65 AAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQ 100 (103)
Q Consensus 65 ~aI~~yL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (103)
.-|-+||++.|.|++...........|...-..++.
T Consensus 74 ~~ideYLDeTy~LFssy~In~~dL~~Wqk~~~~L~~ 109 (122)
T PF10757_consen 74 ELIDEYLDETYMLFSSYGINDSDLQKWQKSNQRLFR 109 (122)
T ss_pred HHHHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHHH
Confidence 446778888887766655555666777666555554
No 214
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=47.61 E-value=42 Score=22.19 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=35.7
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
.++..|+++++..+..++ .+-|.--...|-+||-..++..+. +..+.+.|.+.
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~-~g~~~~~l~~~ 264 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-SGTLTRYLQPL 264 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEcc-chHHHHHHHHH
Confidence 456789999999888643 223555566788999998887653 34565555443
No 215
>PF13728 TraF: F plasmid transfer operon protein
Probab=47.32 E-value=52 Score=21.34 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=32.4
Q ss_pred cEEEeeCCCCCcH----HHHHHHHhcCCCcEEEEecCCCc---------cccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAE----PIRFILSYMEQDFEDIRIEKDNW---------PALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~----~vr~~l~~~gi~~~~~~v~~~~~---------~~~~~~~p~~~vP~l~~ 56 (103)
+-+++-..|++|. .++.+....|+++..+.+|-... ....+...-..+|++..
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 4456667899997 45666677888877777763211 11222233458998664
No 216
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=47.22 E-value=19 Score=21.36 Aligned_cols=52 Identities=8% Similarity=-0.134 Sum_probs=25.0
Q ss_pred cEEEeeCCCCCcHHH----HHHHHhc-CCCcEEEEecCC--CccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPI----RFILSYM-EQDFEDIRIEKD--NWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~v----r~~l~~~-gi~~~~~~v~~~--~~~~~~~~~p~~~vP~l~~ 56 (103)
+.++.-+.||-|... .-+++.. +++++....+.. ..+.++. +....+|+++.
T Consensus 45 ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 45 ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEE
Confidence 445566778888743 3344444 555555444321 1334555 77889999885
No 217
>PRK13356 aminotransferase; Provisional
Probab=46.97 E-value=31 Score=23.16 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=35.3
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
+++..|+++++..+..++ .+-|+.-...+-+||-..++..+. ...+.+.|.+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~~~~-~g~~~~~l~~ 276 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSLQ-PGPVTRRARE 276 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCEEec-CChHHHHHHH
Confidence 567889999999888643 234555566788899998887663 2345444433
No 218
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.89 E-value=59 Score=21.51 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=17.4
Q ss_pred ccEEEeeCCCCCcH----HHHHHHHhcCCCc
Q psy14325 3 SYKLYYFPIKGLAE----PIRFILSYMEQDF 29 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~----~vr~~l~~~gi~~ 29 (103)
.+.+|.-..||+|. +.+-++...+-.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 46677778999998 4444555555333
No 219
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=45.71 E-value=29 Score=23.57 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEe--ehHHHHHHHHHh
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLH--QSAAICRYLAKQ 74 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~--eS~aI~~yL~~~ 74 (103)
+++..|+++++..+...+ .+-|+-....|-+||-..++..+. ....+.+-|.+.
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id~~~~~~g~~g~~~~~L~~~ 287 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQSA 287 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECcEECCCCCCCHHHHHHHHH
Confidence 567889999999888742 234555667788999998887764 334555544443
No 220
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=45.14 E-value=50 Score=17.75 Aligned_cols=52 Identities=10% Similarity=0.191 Sum_probs=29.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcC------CCcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYME------QDFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~g------i~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
+.+++.+.|+.|+...-.++... ..+....++.+.. +.........+|.+..
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 45677788999997665554332 2344445554432 2222222368898774
No 221
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=44.48 E-value=14 Score=20.57 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=13.1
Q ss_pred cEEEeeCCCCCcHHHHHHHH
Q psy14325 4 YKLYYFPIKGLAEPIRFILS 23 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~ 23 (103)
+.+++.+.||+|.+..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 45667789999998866554
No 222
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=43.92 E-value=46 Score=20.43 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=20.9
Q ss_pred cEEEeeCCCCCcHHHH----HHHHhc--CCCcEEEEec
Q psy14325 4 YKLYYFPIKGLAEPIR----FILSYM--EQDFEDIRIE 35 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr----~~l~~~--gi~~~~~~v~ 35 (103)
+.+|..+.||+|.... -+.+.. +++++.+...
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~ 40 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGG 40 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecc
Confidence 6788889999998444 344444 5666665443
No 223
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=43.87 E-value=57 Score=18.05 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=32.3
Q ss_pred EEEeeCCCCCcHHHHHHHHhcC---CCcEEEEecCCCcc---ccCCCCCCCCCceEEE--CCEEE
Q psy14325 5 KLYYFPIKGLAEPIRFILSYME---QDFEDIRIEKDNWP---ALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~g---i~~~~~~v~~~~~~---~~~~~~p~~~vP~l~~--~~~~l 61 (103)
..|+.+.|+.|+...-.++... -.+....++.++.+ ++.+...-..+|.++. +|..+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 4456678999987665554321 12344555544332 4444555667998774 66544
No 224
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.57 E-value=55 Score=19.60 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=41.0
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEecCCC-----ccccCCCCCCCCCceEEE--CCEEEeehHHHHHHHHHh
Q psy14325 10 PIKGLAEPIRFILSYMEQDFEDIRIEKDN-----WPALKPKMPFGKMPVLEV--DGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 10 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~-----~~~~~~~~p~~~vP~l~~--~~~~l~eS~aI~~yL~~~ 74 (103)
+..|-...++-.++.+|++|..++|...+ -+.|.+....-.=|||.+ +| +.++.-|.-.+
T Consensus 42 ~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrsG-----tRs~~ly~~~~ 108 (130)
T COG3453 42 PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRSG-----TRSLNLYGLGE 108 (130)
T ss_pred CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecCC-----chHHHHHHHHH
Confidence 45688889999999999999999998743 123444444455688887 55 34444454443
No 225
>PRK10667 Hha toxicity attenuator; Provisional
Probab=43.56 E-value=39 Score=19.93 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy14325 65 AAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQ 100 (103)
Q Consensus 65 ~aI~~yL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (103)
.-|-+||++.|.|++...........|......++.
T Consensus 74 ~~ideYLDeTy~LF~sy~I~~~dl~~W~k~~~~L~~ 109 (122)
T PRK10667 74 EQIDEYLDDTYMLFSSYGINDQDLQKWRKSGNRLFR 109 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 346678888887666555555566666665555443
No 226
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=43.51 E-value=34 Score=23.08 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=36.7
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEee--hHHHHHHHHHh
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQ--SAAICRYLAKQ 74 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~e--S~aI~~yL~~~ 74 (103)
+++..|+++++..+..++ .+-|......|-+||-..++..+.+ ...+.+.|.+.
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id~~~~~~~~~g~~~~~l~~~ 279 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQEA 279 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECCEECCCCCCChHHHHHHHH
Confidence 567889999999888743 2345656678899999988876632 34454444443
No 227
>PRK13949 shikimate kinase; Provisional
Probab=43.34 E-value=32 Score=21.22 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=27.7
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEE
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDI 32 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~ 32 (103)
|..+-|.+.++++-+.-.+.+.+..|.++-..
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 66788999999999999999999999886543
No 228
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=41.72 E-value=19 Score=19.52 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECC
Q psy14325 16 EPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDG 58 (103)
Q Consensus 16 ~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~ 58 (103)
..+|-+|..+|+-|....-+....|++ ..|..++-++++|-
T Consensus 25 ~~lr~~L~~~G~RyR~~~~~lpG~PDi--v~~~~k~aIFVdGC 65 (75)
T PF03852_consen 25 LALRRALHALGLRYRLNRKDLPGKPDI--VFPKYKIAIFVDGC 65 (75)
T ss_dssp HHHHHHHHHTT--EEES-TTSTT--SE--EEGGGTEEEEEE-T
T ss_pred HHHHHHHHhcCCEEEEccCcCCCCCCE--EECCCCEEEEEecc
Confidence 478899999999998766555554443 23455666666653
No 229
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=41.65 E-value=23 Score=19.65 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=30.0
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCC---cEEEEecCC-CccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQD---FEDIRIEKD-NWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~---~~~~~v~~~-~~~~~~~~~p~~~vP~l~~ 56 (103)
+..++.+.|+.|+...-.+++..-. .....++.+ +.++..+...-..+|++..
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEE
Confidence 3456677899998777555432221 233444544 3344444555667897664
No 230
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=41.02 E-value=52 Score=22.01 Aligned_cols=52 Identities=8% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEe-ehHHHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLH-QSAAICRYLA 72 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~-eS~aI~~yL~ 72 (103)
.++..|+++++..+...+ .+-|.--...|-+||-..++..+. ....+.+.|.
T Consensus 212 ~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~~~~~~g~~g~~~~~l~ 268 (283)
T PRK07650 212 VLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIEERDFPGKVGMVTKRLQ 268 (283)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEECCEEeCCCCCHHHHHHH
Confidence 567789999998887643 234555566789999998887663 2234444443
No 231
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=40.65 E-value=42 Score=22.58 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=35.0
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
+++..|++++...+..++ .+-|......|-+||...++..+. ...+.+.|.+
T Consensus 225 ~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i~~~~~~-~g~~~~~l~~ 280 (292)
T PRK07544 225 LAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEIGEYRFT-PGAITRDLMD 280 (292)
T ss_pred HHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEEeeEEeC-CChHHHHHHH
Confidence 556789999999888743 234555667788999998876653 3344444433
No 232
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.19 E-value=18 Score=21.38 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=42.5
Q ss_pred cHHHHHHHHhcCCCcEEEEecCCC---ccccCCCCCCCCCceEEE---CCEEEeehHHHHHHHHHhcCCCC
Q psy14325 15 AEPIRFILSYMEQDFEDIRIEKDN---WPALKPKMPFGKMPVLEV---DGKQLHQSAAICRYLAKQCGLNG 79 (103)
Q Consensus 15 ~~~vr~~l~~~gi~~~~~~v~~~~---~~~~~~~~p~~~vP~l~~---~~~~l~eS~aI~~yL~~~~~l~~ 79 (103)
..-+|-+....|++.+-..++... .++--...-.|-+|.++| .-...-|...|+.||.++..+.+
T Consensus 25 P~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~GEIt~ 95 (128)
T PF09868_consen 25 PALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRGEITP 95 (128)
T ss_pred HHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 345666777888888765554321 111113445678898887 45677888999999999854443
No 233
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.51 E-value=20 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=20.7
Q ss_pred eCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy14325 9 FPIKGLAEPIRFILSYMEQDFEDIRI 34 (103)
Q Consensus 9 ~~~~~~~~~vr~~l~~~gi~~~~~~v 34 (103)
+..|+.|++.+.+++..||+.+...-
T Consensus 178 ~~ns~~~e~l~~v~aq~~I~v~~~es 203 (431)
T COG4408 178 HGNSGSAEMLTAVLAQHGIDVEPCES 203 (431)
T ss_pred CCCChHHHHHHHHHHhcCCceEEcCC
Confidence 34588899999999999998876543
No 234
>PRK08118 topology modulation protein; Reviewed
Probab=39.43 E-value=38 Score=20.80 Aligned_cols=29 Identities=14% Similarity=-0.070 Sum_probs=26.5
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCc
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDF 29 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~ 29 (103)
|..+.+.+.++|+-+-.++.+.+..|+++
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 77888999999999999999999999984
No 235
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=39.36 E-value=41 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=21.6
Q ss_pred CcHHHHHHHHhcCCCcEEEEecCCCcc
Q psy14325 14 LAEPIRFILSYMEQDFEDIRIEKDNWP 40 (103)
Q Consensus 14 ~~~~vr~~l~~~gi~~~~~~v~~~~~~ 40 (103)
....+--+|++.|++|+...++..++|
T Consensus 17 ~mk~Aa~~L~~fgi~ye~~VvSAHRTP 43 (162)
T COG0041 17 TMKKAAEILEEFGVPYEVRVVSAHRTP 43 (162)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccCCH
Confidence 456777899999999999999875533
No 236
>COG3150 Predicted esterase [General function prediction only]
Probab=38.90 E-value=37 Score=21.67 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=27.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+-|++|+.||.+.+..+.+...+-.+..+....
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~ 35 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYST 35 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeeec
Confidence 347889999999999999999888877766654
No 237
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=37.87 E-value=32 Score=22.56 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=17.6
Q ss_pred cEEEeeCCCCCcHHHHHHHHhc
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYM 25 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~ 25 (103)
+.+|..+.||||++..--+...
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 5677788999999988777653
No 238
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=37.46 E-value=32 Score=23.05 Aligned_cols=21 Identities=5% Similarity=-0.150 Sum_probs=16.9
Q ss_pred cEEEeeCCCCCcHHHHHHHHh
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY 24 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~ 24 (103)
+-+.++.+||+|..-||.|-.
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ 82 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYI 82 (249)
T ss_pred EEEEecccCccchhhHHHHHH
Confidence 445678899999999998854
No 239
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=37.36 E-value=27 Score=18.98 Aligned_cols=53 Identities=13% Similarity=0.242 Sum_probs=31.1
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCC----CcEEEEecCCCccccCCCCCCC--CCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQ----DFEDIRIEKDNWPALKPKMPFG--KMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi----~~~~~~v~~~~~~~~~~~~p~~--~vP~l~~ 56 (103)
+.+++.+.|+.|...+-.++...- .+....++.++.+++....... .+|++..
T Consensus 16 ~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 16 LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEE
Confidence 344555667778877776654332 3556666665544444444444 8998774
No 240
>PRK05568 flavodoxin; Provisional
Probab=36.94 E-value=81 Score=18.40 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=23.1
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHh----cCCCcEEEEec
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSY----MEQDFEDIRIE 35 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v~ 35 (103)
|..+.+.|+...++++++--.+.+ .|++++...+.
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 666777788889999876555543 46665555443
No 241
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=36.08 E-value=32 Score=20.29 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=27.2
Q ss_pred CCCCCcHHHH----HHHHhcCCCcEEEEecCCCccc-------cCC--CCCCCCCceEEE--CCEEEeehH
Q psy14325 10 PIKGLAEPIR----FILSYMEQDFEDIRIEKDNWPA-------LKP--KMPFGKMPVLEV--DGKQLHQSA 65 (103)
Q Consensus 10 ~~~~~~~~vr----~~l~~~gi~~~~~~v~~~~~~~-------~~~--~~p~~~vP~l~~--~~~~l~eS~ 65 (103)
+.||.|.++. -++....-....+.+..++.++ |+. ......||+|+- ++..|.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 3578888665 3444433345555555544332 332 344567999885 556666553
No 242
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=35.97 E-value=53 Score=21.89 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEee--hHHHHHHHHH
Q psy14325 18 IRFILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQ--SAAICRYLAK 73 (103)
Q Consensus 18 vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~e--S~aI~~yL~~ 73 (103)
+.-.++..|+++++..+...+ .+-|.--...+-+||-..++..+.. ...+.+.|.+
T Consensus 208 vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~id~~~~~~~~~g~~~~~L~~ 269 (276)
T TIGR01121 208 ILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEIDGQQIGDGKPGPWTRQLQK 269 (276)
T ss_pred HHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHH
Confidence 333677889999999888643 2335545567888999988765532 2345554443
No 243
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.63 E-value=36 Score=21.13 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHhcCCCcEEEEecCCC
Q psy14325 13 GLAEPIRFILSYMEQDFEDIRIEKDN 38 (103)
Q Consensus 13 ~~~~~vr~~l~~~gi~~~~~~v~~~~ 38 (103)
+.++++...|+..|++|+.......+
T Consensus 12 ~~~~~a~~~L~~~gi~~dv~V~SaHR 37 (156)
T TIGR01162 12 PTMKKAADILEEFGIPYELRVVSAHR 37 (156)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECccc
Confidence 56889999999999999999888754
No 244
>KOG2501|consensus
Probab=35.22 E-value=92 Score=19.40 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=23.0
Q ss_pred cEEEee-CCCCCcH-------HHHHHHHhcCCCcEEEEecCCC
Q psy14325 4 YKLYYF-PIKGLAE-------PIRFILSYMEQDFEDIRIEKDN 38 (103)
Q Consensus 4 ~~Ly~~-~~~~~~~-------~vr~~l~~~gi~~~~~~v~~~~ 38 (103)
+.||.. ..||.|+ .+.-.+...+-+++.+.|+.++
T Consensus 36 V~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 36 VGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 445544 3577776 3444566677789999998754
No 245
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=34.66 E-value=53 Score=20.07 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=34.9
Q ss_pred CCEEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy14325 57 DGKQLHQSAAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQRN 102 (103)
Q Consensus 57 ~~~~l~eS~aI~~yL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (103)
+|....|+.++++-|-+-..+...++.-...+...-+.++||..+|
T Consensus 46 ~~~Y~~dt~~vv~~lr~~l~l~~d~~~~~~~~~~ar~~in~~vs~Y 91 (145)
T PF13326_consen 46 TGDYVKDTRAVVKTLREALELDKDDPNRAEAAAEARELINDYVSRY 91 (145)
T ss_dssp -S-CHHHHHHHHHHHHHHHCS-TT-TTHHHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 4668889999999998887777667766777888888899998887
No 246
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=34.34 E-value=62 Score=19.48 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=15.4
Q ss_pred ccEEEeeCCCCCcHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILS 23 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~ 23 (103)
.+..|+...||+|.+..-.+.
T Consensus 18 ~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 18 EVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred EEEEEECCCCcchhhhhHHHH
Confidence 356677778999998776664
No 247
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=34.08 E-value=46 Score=18.72 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhcCCCC
Q psy14325 64 SAAICRYLAKQCGLNG 79 (103)
Q Consensus 64 S~aI~~yL~~~~~l~~ 79 (103)
..|||-|++++.+..|
T Consensus 11 iNAvCl~~A~~~~i~P 26 (91)
T PF10850_consen 11 INAVCLHIAERKGIQP 26 (91)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4789999999876444
No 248
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=34.00 E-value=91 Score=17.51 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=25.6
Q ss_pred eehHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHH
Q psy14325 62 HQSAAICRYLAKQC--GLNGKDAWEDLQIDIAFETFNDF 98 (103)
Q Consensus 62 ~eS~aI~~yL~~~~--~l~~~~~~~~~~~~~~~~~~~~~ 98 (103)
.+...|..-|.+.. |..|.++..+..+..|..++..+
T Consensus 35 ~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~~~ 73 (118)
T PF07739_consen 35 KEWDELFAELAALMEEGVDPDSPEVQELAERWMELINQF 73 (118)
T ss_dssp HHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 44566766666654 67899999999999999988744
No 249
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=33.98 E-value=32 Score=20.40 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=22.9
Q ss_pred HHHhcCCCcEEEEecCCC-----cc---ccCCCCCCCCCceEEECCEEE
Q psy14325 21 ILSYMEQDFEDIRIEKDN-----WP---ALKPKMPFGKMPVLEVDGKQL 61 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~-----~~---~~~~~~p~~~vP~l~~~~~~l 61 (103)
.|+.+|++++...+.... .+ +++.......+|+...||+.+
T Consensus 35 ~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv 83 (123)
T PF06953_consen 35 WLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIV 83 (123)
T ss_dssp HHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEE
T ss_pred HHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEE
Confidence 346777777766655432 11 344456677899988877654
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=33.98 E-value=61 Score=18.19 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=24.7
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIR 33 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~ 33 (103)
+-|++-++++-+.-++.+++..|.++-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 357889999999999999999987764443
No 251
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.82 E-value=28 Score=21.46 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=20.0
Q ss_pred CCcHHHHHHHHhcCCCcEEEEecCCC
Q psy14325 13 GLAEPIRFILSYMEQDFEDIRIEKDN 38 (103)
Q Consensus 13 ~~~~~vr~~l~~~gi~~~~~~v~~~~ 38 (103)
+.+++++..|++.|++|+.......+
T Consensus 14 ~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 14 PIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 57889999999999999988877654
No 252
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=33.26 E-value=46 Score=19.32 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=16.2
Q ss_pred ccEEEeeCCCCCcHHHHHHHHh
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSY 24 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~ 24 (103)
.++.|..+.||+|++..-.+..
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEECCCChhHHHhhHHHHH
Confidence 4667777889999987655543
No 253
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=33.13 E-value=51 Score=22.37 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=37.0
Q ss_pred cHHHHHHHHhcCCCcEE--EEecCCCccccCCCCCCCCCceEEE--CC-EEEeehHHHHHHHHH
Q psy14325 15 AEPIRFILSYMEQDFED--IRIEKDNWPALKPKMPFGKMPVLEV--DG-KQLHQSAAICRYLAK 73 (103)
Q Consensus 15 ~~~vr~~l~~~gi~~~~--~~v~~~~~~~~~~~~p~~~vP~l~~--~~-~~l~eS~aI~~yL~~ 73 (103)
++++.-.|...|++-+. ...+...|--++.++|...+||++. +. ....++..+=+-|..
T Consensus 95 a~~i~~~l~~~~v~a~~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~ 158 (268)
T COG3384 95 AQRIVELLAKLGVPADAPSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRK 158 (268)
T ss_pred HHHHHHHhcccCccccCCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 45666667777777654 3333345556778999999999996 33 234555555444443
No 254
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=32.99 E-value=64 Score=17.99 Aligned_cols=52 Identities=19% Similarity=0.070 Sum_probs=34.3
Q ss_pred cEEEeeCCCCCcHHHH----HHHH-hcCCCcEEEEecCCCccccCCCCCCCCCceEE
Q psy14325 4 YKLYYFPIKGLAEPIR----FILS-YMEQDFEDIRIEKDNWPALKPKMPFGKMPVLE 55 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr----~~l~-~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~ 55 (103)
.+||-...+|.+++.- -+++ +.+-.|+...+|..+.|+..+...---.|+|+
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence 5788777788887543 3333 44445999999987777666555555556655
No 255
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.62 E-value=37 Score=22.94 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=31.4
Q ss_pred HhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 23 SYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 23 ~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
.+.|.++-.+...- +.|.+..-.+.+||++-||... +...+++.+.+.
T Consensus 168 aELGADiVK~~y~~---~~f~~vv~a~~vPVviaGG~k~-~~~~~L~~v~~a 215 (264)
T PRK08227 168 AEMGAQIIKTYYVE---EGFERITAGCPVPIVIAGGKKL-PERDALEMCYQA 215 (264)
T ss_pred HHHcCCEEecCCCH---HHHHHHHHcCCCcEEEeCCCCC-CHHHHHHHHHHH
Confidence 46677766555432 4455555567799999988776 446677777664
No 256
>PRK09301 circadian clock protein KaiB; Provisional
Probab=32.48 E-value=66 Score=18.55 Aligned_cols=53 Identities=19% Similarity=0.053 Sum_probs=35.7
Q ss_pred cEEEeeCCCCCcHHHH----HHHH-hcCCCcEEEEecCCCccccCCCCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIR----FILS-YMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr----~~l~-~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~ 56 (103)
++||-...+|.+++.- -+++ +.+-.|+...+|..+.++..+...---.|+|+-
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAK 66 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhh
Confidence 6788777788887543 3333 445559999999887776666555555666663
No 257
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=32.04 E-value=1.5e+02 Score=21.66 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 10 PIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 10 ~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
...+..+-++-+|+..|+.+....-....-+++ +..+..++=++.... ....+++||.++||
T Consensus 217 ~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i-~~~~~A~lniv~~~~----~~~~~A~~Le~~fG 278 (466)
T TIGR01282 217 NIGGDAWESRILLEEIGLRVVAQWSGDGTLNEM-ENAPKAKLNLIHCYR----SMNYISRHMEEKYG 278 (466)
T ss_pred CCcccHHHHHHHHHHcCCeEEEEECCCCCHHHH-HhcccCCEEEEEChH----HHHHHHHHHHHHhC
Confidence 345667889999999999987433211111122 223333333222110 11357889988886
No 258
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=31.04 E-value=60 Score=20.63 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=25.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFED 31 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~ 31 (103)
+++-+-|+|+.+-..+.+.+..|+++-.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 7888999999999999999999999765
No 259
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=31.02 E-value=1.3e+02 Score=18.32 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=19.2
Q ss_pred eeCCCCCcHHHHHHHHh------------cCCCcEEEEecCCC
Q psy14325 8 YFPIKGLAEPIRFILSY------------MEQDFEDIRIEKDN 38 (103)
Q Consensus 8 ~~~~~~~~~~vr~~l~~------------~gi~~~~~~v~~~~ 38 (103)
....||.|.+-.-.|.. .+-.++.+.|+.+.
T Consensus 33 wAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~ 75 (146)
T cd03008 33 GAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ 75 (146)
T ss_pred ECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC
Confidence 34568999887766643 12247777777653
No 260
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.71 E-value=76 Score=23.10 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=30.4
Q ss_pred CccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 2 PSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 2 ~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+.+.||+-|+++-+--++++....+.+|+...-..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 46899999999999999999999999988765544
No 261
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.44 E-value=1.3e+02 Score=19.21 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhcCCC--cEEEEecCCCccccCCCCCCCCCceEEE-CCEEEeehH
Q psy14325 12 KGLAEPIRFILSYMEQD--FEDIRIEKDNWPALKPKMPFGKMPVLEV-DGKQLHQSA 65 (103)
Q Consensus 12 ~~~~~~vr~~l~~~gi~--~~~~~v~~~~~~~~~~~~p~~~vP~l~~-~~~~l~eS~ 65 (103)
|+-...++-+.+...-+ ++.+....+.-+.+-..+..+.||-|++ +..++-.|.
T Consensus 69 s~~G~~ilr~vek~rP~vY~ElH~Yr~eny~KLt~~~Rs~gVP~lidl~agVLlgSV 125 (198)
T COG4073 69 SEVGARILRVVEKLRPDVYVELHCYRPENYRKLTAERRSGGVPPLIDLGAGVLLGSV 125 (198)
T ss_pred chhhHHHHHHHHHhCCceEEEEeecCHhHHHHhccccccCCCCceeeecCCeEEeec
Confidence 45556666666666554 2333333333333333455777999998 666666663
No 262
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=30.35 E-value=1.7e+02 Score=21.74 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=35.2
Q ss_pred EEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECC-----EEEeeh
Q psy14325 6 LYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDG-----KQLHQS 64 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~-----~~l~eS 64 (103)
++..-.|...+.+..+|+...++|+...+. ..|.+|+|.+++ .+|+|.
T Consensus 65 FvES~YS~lGq~Iv~ILes~Rf~y~~ei~~-----------~kg~lP~LT~~~kGRy~lII~EN 117 (487)
T PF12062_consen 65 FVESQYSQLGQDIVAILESNRFKYKVEIAS-----------GKGDLPVLTDNDKGRYSLIIFEN 117 (487)
T ss_pred EEeeccchhhHHHHHHHHhceeeEEEEEcc-----------CCCCCCccccCCCCcEEEEEehh
Confidence 344456888999999999999998865532 346789999843 366776
No 263
>PRK06217 hypothetical protein; Validated
Probab=30.31 E-value=59 Score=20.09 Aligned_cols=29 Identities=7% Similarity=-0.100 Sum_probs=25.7
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCc
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDF 29 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~ 29 (103)
|..+.|.+.++|+-+-..+.+.+..|+++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 55688999999999999999999999875
No 264
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=30.28 E-value=40 Score=21.44 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCcEEEEecCCC---cc-ccCCCCCCCCCceEEECCEEEeehHHHHHHHHHh
Q psy14325 18 IRFILSYMEQDFEDIRIEKDN---WP-ALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74 (103)
Q Consensus 18 vr~~l~~~gi~~~~~~v~~~~---~~-~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~ 74 (103)
+.-+++..|+++++..+...+ .+ -|+--...|-.||-..++..+. ...|.+-|-+.
T Consensus 171 ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~~~~~-~~p~~~~L~~~ 230 (231)
T PF01063_consen 171 LLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDGRSFG-PGPITRRLQEA 230 (231)
T ss_dssp HHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETTEEST-THHHHHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEECCEECC-CCHHHHHHHHh
Confidence 335556789999998888643 33 3444556888999998988777 77777766554
No 265
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=30.12 E-value=1e+02 Score=22.31 Aligned_cols=63 Identities=11% Similarity=-0.030 Sum_probs=46.4
Q ss_pred CcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 14 LAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 14 ~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
-...+--+|...||..+.--+..+....+...--.-..|.+...|..-.|...|+.++.+-..
T Consensus 327 ~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~ 389 (413)
T COG0112 327 TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD 389 (413)
T ss_pred CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence 467888889999988887766666543444443344578888888778899999999999753
No 266
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=30.00 E-value=87 Score=21.16 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=34.2
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEeehHHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLHQSAAICRYL 71 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL 71 (103)
.++..|+++++..+..++ .+-|.--...|-+|+...+|..+... .+.+-|
T Consensus 227 ~~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~id~~~~~~~-~~~~~l 280 (292)
T PRK07849 227 VAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTLDGRPLPRD-PLADEL 280 (292)
T ss_pred HHHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEECCEECCCC-hHHHHH
Confidence 456789999999888743 23355556788999999888765443 444444
No 267
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=29.89 E-value=77 Score=20.91 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEe--ehHHHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLH--QSAAICRYLA 72 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~--eS~aI~~yL~ 72 (103)
.++..|+++++..+..++ .+-|+--...|-+||-..++..+. ....+.+.|.
T Consensus 210 ~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i~~~~~~~~~~~~~~~~l~ 267 (270)
T cd01558 210 LAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLR 267 (270)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEECCeECCCCCCCHHHHHHH
Confidence 456789999988887642 223555566788999988776542 2234444443
No 268
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=29.66 E-value=10 Score=20.82 Aligned_cols=50 Identities=22% Similarity=0.134 Sum_probs=29.9
Q ss_pred EEeeCCCCCcHHHHHHHH-----hcCCCcEEEEecCCCccccCCCCCCCCCceEE
Q psy14325 6 LYYFPIKGLAEPIRFILS-----YMEQDFEDIRIEKDNWPALKPKMPFGKMPVLE 55 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~ 55 (103)
||-...++.+.++.-.++ +.+-+|+...+|..+.++......---.|+|+
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 555555555555544443 57888999999987766554443333344443
No 269
>KOG4023|consensus
Probab=29.44 E-value=1.2e+02 Score=17.51 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCccEEEeeCCCCCc------HHHHHHHHhcCCCcEEEEecCCC----------ccccCCCCCCCCCceEEECCEE
Q psy14325 1 MPSYKLYYFPIKGLA------EPIRFILSYMEQDFEDIRIEKDN----------WPALKPKMPFGKMPVLEVDGKQ 60 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~------~~vr~~l~~~gi~~~~~~v~~~~----------~~~~~~~~p~~~vP~l~~~~~~ 60 (103)
|..++.|....++.. +.+-.+|....|+++.+.+.... .++.+..+....-|-+..++..
T Consensus 1 m~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y 76 (108)
T KOG4023|consen 1 MMVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQY 76 (108)
T ss_pred CCceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccc
Confidence 445778877655543 35678888889999988876521 2345555655566777765543
No 270
>COG3098 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.11 E-value=44 Score=19.32 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.3
Q ss_pred EEECCEEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy14325 54 LEVDGKQLHQSAAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQR 101 (103)
Q Consensus 54 l~~~~~~l~eS~aI~~yL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (103)
|.+.+..+-+..||.-|++.-+. .+..+.+.+...+..+++++++
T Consensus 62 lle~~~~lP~~fai~PY~EeAl~---~~~~~~a~lLa~l~~ld~L~~~ 106 (109)
T COG3098 62 LLESNQALPNAFAIAPYYEEALA---GDHPQRAALLAVLQELDALFAK 106 (109)
T ss_pred HHHcCCCCCcchhhhHHHHHHHh---ccchHHHHHHHHHHHHHHHHcC
Confidence 34456677788899999988743 2233577788888888888875
No 271
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=28.78 E-value=1e+02 Score=16.56 Aligned_cols=16 Identities=6% Similarity=-0.265 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14325 84 EDLQIDIAFETFNDFR 99 (103)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (103)
.+.+|..|+.|+.+-|
T Consensus 9 t~~~V~~WL~Wa~~ef 24 (75)
T cd08540 9 STDHVRQWLEWAVKEY 24 (75)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3778889998887654
No 272
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=28.71 E-value=59 Score=14.78 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=10.6
Q ss_pred CCcHHHHHHHHhcCCCcE
Q psy14325 13 GLAEPIRFILSYMEQDFE 30 (103)
Q Consensus 13 ~~~~~vr~~l~~~gi~~~ 30 (103)
-....+|-+|.+.||+|.
T Consensus 4 ltV~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 4 LTVAQLKRILDEHGIEFP 21 (35)
T ss_dssp --SHHHHHHHHHHT---S
T ss_pred CcHHHHHHHHHHcCCCCC
Confidence 345678889999999885
No 273
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=28.52 E-value=1e+02 Score=20.77 Aligned_cols=55 Identities=9% Similarity=0.193 Sum_probs=36.0
Q ss_pred HHHHhcCCCcEEEEecCCC---cc-ccCCCCCCCCCceEEECCEEEee--hHHHHHHHHHh
Q psy14325 20 FILSYMEQDFEDIRIEKDN---WP-ALKPKMPFGKMPVLEVDGKQLHQ--SAAICRYLAKQ 74 (103)
Q Consensus 20 ~~l~~~gi~~~~~~v~~~~---~~-~~~~~~p~~~vP~l~~~~~~l~e--S~aI~~yL~~~ 74 (103)
-.++..|+++++..+..++ .+ -|.--...+-+||-..++..+.+ ...+.+.|.+.
T Consensus 217 ela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~~i~~~~~~~~~~g~~t~~l~~~ 277 (290)
T PRK12400 217 SLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHLDGTAIQDGQVGPITKMLQRS 277 (290)
T ss_pred HHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEEEECCEECCCCCcCHHHHHHHHH
Confidence 3567789999999888642 22 35555567889999888766542 24555555443
No 274
>PRK05569 flavodoxin; Provisional
Probab=28.32 E-value=1.3e+02 Score=17.52 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=21.3
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHh----cCCCcEEEEe
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSY----MEQDFEDIRI 34 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~----~gi~~~~~~v 34 (103)
|.++.+.|++..+++.++--.+.+ .|.+.+...+
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~ 38 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHV 38 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 666666667668888766554443 5766655544
No 275
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.61 E-value=1.9e+02 Score=20.75 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 12 KGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 12 ~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
....+-++-+|+..|+++......-..-+++. ..+...+=++.... ....++++|.++||
T Consensus 184 ~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~-~~~~A~lniv~~~~----~~~~~a~~Le~~fG 243 (421)
T cd01976 184 GGDAWASRILLEEMGLRVVAQWSGDGTLNEME-NAHKAKLNLIHCYR----SMNYIARMMEEKYG 243 (421)
T ss_pred CccHHHHHHHHHHcCCeEEEEeCCCCCHHHHH-hcccCCEEEEECcH----HHHHHHHHHHHHhC
Confidence 34567788899999999874332212222332 23333332222110 01357899998886
No 276
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=27.55 E-value=1e+02 Score=18.05 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=19.7
Q ss_pred CCCCCCceEEE-CCEEEeehHHHHHHHHH
Q psy14325 46 MPFGKMPVLEV-DGKQLHQSAAICRYLAK 73 (103)
Q Consensus 46 ~p~~~vP~l~~-~~~~l~eS~aI~~yL~~ 73 (103)
..-.++|+++. +..+++....+.+-+..
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHHHHH
Confidence 45668999886 55788888777665543
No 277
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=27.23 E-value=43 Score=17.41 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=15.3
Q ss_pred cEEEee----CCCCCcHHHHHHHHh
Q psy14325 4 YKLYYF----PIKGLAEPIRFILSY 24 (103)
Q Consensus 4 ~~Ly~~----~~~~~~~~vr~~l~~ 24 (103)
++||-| ..+.+|.+|-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 677765 346789999888864
No 278
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=26.87 E-value=1.4e+02 Score=17.62 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCE
Q psy14325 16 EPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGK 59 (103)
Q Consensus 16 ~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~ 59 (103)
..+|-+|...|+.|....-.....+++ .++..++-+.+||.+
T Consensus 25 ~~lr~~L~~~G~rfR~q~~~lpg~pD~--~~~~~klaIfVDGcf 66 (117)
T TIGR00632 25 KALASLLTGLGLRFRLQDASLPGTPDI--VFDEYRCVIFIHGCF 66 (117)
T ss_pred HHHHHHHHhCCCEEEEecCCCCCcccE--EecCCCEEEEEcccc
Confidence 356778888999988765443333443 356667777777764
No 279
>KOG3131|consensus
Probab=26.35 E-value=37 Score=22.89 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=15.6
Q ss_pred ccEEEeeCCCCCcHHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFILS 23 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~ 23 (103)
.+|||+.|+||++.---++-.
T Consensus 155 kpTLyylPHcp~~LyeNiL~s 175 (281)
T KOG3131|consen 155 KPTLYYLPHCPYALYENILWS 175 (281)
T ss_pred ceeeEecCCCchHHHHHHHHH
Confidence 479999999998875444433
No 280
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=25.90 E-value=1.5e+02 Score=17.46 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=20.8
Q ss_pred eeCCCCCcH-HHHHHHHhcCCCcEEEEecC
Q psy14325 8 YFPIKGLAE-PIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 8 ~~~~~~~~~-~vr~~l~~~gi~~~~~~v~~ 36 (103)
.++.|+.|+ +.|++..+.|..++....+-
T Consensus 74 ~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~~ 103 (118)
T PF14427_consen 74 QYPPCNSCKGKMRRASEKSGATIQYTWPNG 103 (118)
T ss_pred ecCCCchhHHHHHHhhhccCcEEEEecCCC
Confidence 456788888 66777777888877766554
No 281
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=25.68 E-value=1.2e+02 Score=18.21 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=15.0
Q ss_pred ccEEEeeCCCCCcHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFIL 22 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l 22 (103)
++++||++.++++++.---|
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl 21 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKL 21 (134)
T ss_pred cEEEEEECCChhHHHHHHHh
Confidence 47899999999998653333
No 282
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=25.43 E-value=1.6e+02 Score=17.68 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHhcCC-----CcEEEEecCCCccccCCCCCCCCCceEEE--CCEEE
Q psy14325 13 GLAEPIRFILSYMEQ-----DFEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQL 61 (103)
Q Consensus 13 ~~~~~vr~~l~~~gi-----~~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~l 61 (103)
|.+.-+-.+|.+.-- .+....++.+..++......-..+|.|+. +|+.+
T Consensus 49 ~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v 104 (132)
T PRK11509 49 PEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR 104 (132)
T ss_pred CccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence 445555555544333 35566677777777777888889999885 77655
No 283
>PRK06852 aldolase; Validated
Probab=25.27 E-value=74 Score=22.03 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHhcCCCcEEEEecC----CCccccCCCCC-CCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 22 LSYMEQDFEDIRIEK----DNWPALKPKMP-FGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 22 l~~~gi~~~~~~v~~----~~~~~~~~~~p-~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
..+.|.++-.+.... .+.+.|.+..- .|.+||++-||... +...+++.+.+
T Consensus 197 aaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~-~~~e~L~~v~~ 252 (304)
T PRK06852 197 AACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST-DPEEFLKQLYE 252 (304)
T ss_pred HHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC-CHHHHHHHHHH
Confidence 456787777666552 12234554333 44899999988776 44556666654
No 284
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=25.12 E-value=1.2e+02 Score=19.78 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHhcCCCcEEEEecCCC---c-cccCCCCCCCCCceEEECCEEEeehHHHHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN---W-PALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~---~-~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~ 73 (103)
.++..|+++++..+..++ . +-|.--...|-+||-..++. -.....|.+.|-+
T Consensus 192 ~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id~~-~~~~~~~~~~l~~ 247 (249)
T cd01559 192 LAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDDH-DGPPGPLTRALRE 247 (249)
T ss_pred HHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEECCc-ccCccHHHHHHHH
Confidence 567789999998887643 2 23444456788899887652 1233455555533
No 285
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=25.11 E-value=1.1e+02 Score=18.23 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=19.4
Q ss_pred CCccEEEeeCCCCCcHHHHH-HHHhcCCC
Q psy14325 1 MPSYKLYYFPIKGLAEPIRF-ILSYMEQD 28 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~-~l~~~gi~ 28 (103)
|.++.++|+..++++..|-- +.+..|-.
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~ 29 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD 29 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC
Confidence 77888999998999886543 33344444
No 286
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=25.10 E-value=1e+02 Score=18.08 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=34.0
Q ss_pred EeeCCCCCcHHHHHHHHhcCCC----cEEEEecCCCccccCCCCCCCCCceEEE--CCEE
Q psy14325 7 YYFPIKGLAEPIRFILSYMEQD----FEDIRIEKDNWPALKPKMPFGKMPVLEV--DGKQ 60 (103)
Q Consensus 7 y~~~~~~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~p~~~vP~l~~--~~~~ 60 (103)
++...||.|+.+-=+|++.--. ...-.|+.++-+++.+...-..+|..+. +|..
T Consensus 21 F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 21 FGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred EeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 4557799999886666554433 3344556666666666666566887664 6644
No 287
>KOG0742|consensus
Probab=25.02 E-value=79 Score=23.43 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=26.0
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEE
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFED 31 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~ 31 (103)
.+-+|+-|+.+-...+|-+.+..|++|-.
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~ 414 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAI 414 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceeh
Confidence 36788899999999999999999999964
No 288
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.87 E-value=3e+02 Score=20.52 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEeehHHHHHHHHHhcC
Q psy14325 12 KGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCG 76 (103)
Q Consensus 12 ~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~yL~~~~~ 76 (103)
....+-++-+|+..|+.+..+.-. ...-+=++..|...+=+..... .-..+++||.++||
T Consensus 179 ~~Dl~eikrLL~~~Gi~vn~v~~~-g~sl~di~~~~~A~~NIvl~~~----~g~~~A~~Le~~fg 238 (513)
T CHL00076 179 QHDCRELKRLLQDLGIEINQIIPE-GGSVEDLKNLPKAWFNIVPYRE----VGLMTAKYLEKEFG 238 (513)
T ss_pred cchHHHHHHHHHHCCCeEEEEECC-CCCHHHHHhcccCcEEEEechh----hhHHHHHHHHHHhC
Confidence 356688999999999999854422 2211112333443333333211 11468999999986
No 289
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=24.77 E-value=93 Score=18.75 Aligned_cols=30 Identities=13% Similarity=-0.115 Sum_probs=25.3
Q ss_pred CccEEEeeCCCCCcHHHHHHHHhcCCCcEE
Q psy14325 2 PSYKLYYFPIKGLAEPIRFILSYMEQDFED 31 (103)
Q Consensus 2 ~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~ 31 (103)
..+.|.+.++|+-+...+.+.+..|.++-.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 357788899999999999999999998644
No 290
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=24.74 E-value=1.6e+02 Score=19.36 Aligned_cols=49 Identities=12% Similarity=0.267 Sum_probs=33.1
Q ss_pred HHHhcCCCcEEEEecCCC---c-cccCCCCCCCCCceEEECCEEEeehHHHHHH
Q psy14325 21 ILSYMEQDFEDIRIEKDN---W-PALKPKMPFGKMPVLEVDGKQLHQSAAICRY 70 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~---~-~~~~~~~p~~~vP~l~~~~~~l~eS~aI~~y 70 (103)
.++..|+++++..+..++ . +-|.--.-.+-+||-..++..+.. ..+.+.
T Consensus 206 ~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id~~~~~~-~~~~~~ 258 (261)
T TIGR03461 206 LLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIGETSYPS-RTLTRL 258 (261)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEECCEEecc-hHHHHH
Confidence 567889999999887643 2 234445567888999988876644 244443
No 291
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=24.06 E-value=1.3e+02 Score=16.39 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCCcEEEEecCC
Q psy14325 16 EPIRFILSYMEQDFEDIRIEKD 37 (103)
Q Consensus 16 ~~vr~~l~~~gi~~~~~~v~~~ 37 (103)
.++.-+|++.|++++....+..
T Consensus 5 mkIk~~L~e~Gi~~~ve~~dis 26 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAVG 26 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeehh
Confidence 4788899999999888877763
No 292
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=24.00 E-value=2.3e+02 Score=19.05 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=53.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCC-CceEEECCEEEeehHHHHHHHHHhc-------
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGK-MPVLEVDGKQLHQSAAICRYLAKQC------- 75 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~-vP~l~~~~~~l~eS~aI~~yL~~~~------- 75 (103)
+-|..-..|+....+--.|.+.|.+.-..--..+.-+++....+.++ +|.-.| =.-.....+.+..+.+++
T Consensus 8 v~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~D-VtD~~~~~~~i~~~~~~~g~iDiLv 86 (246)
T COG4221 8 VALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALD-VTDRAAVEAAIEALPEEFGRIDILV 86 (246)
T ss_pred EEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeec-cCCHHHHHHHHHHHHHhhCcccEEE
Confidence 35666677999999999999999966554433332222322233233 333333 111122234556666666
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHH
Q psy14325 76 ---GLNGKDAWEDLQIDIAFETFN 96 (103)
Q Consensus 76 ---~l~~~~~~~~~~~~~~~~~~~ 96 (103)
|+.+.++...+..+.|-..++
T Consensus 87 NNAGl~~g~~~~~~~~~dw~~Mid 110 (246)
T COG4221 87 NNAGLALGDPLDEADLDDWDRMID 110 (246)
T ss_pred ecCCCCcCChhhhCCHHHHHHHHH
Confidence 355557777888888877765
No 293
>KOG0737|consensus
Probab=23.88 E-value=83 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=30.0
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
.+-||+-|+|+..+.+..+..++|..|..+.+..
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 3678999999999999999999999998877764
No 294
>PRK14528 adenylate kinase; Provisional
Probab=23.76 E-value=96 Score=19.31 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=25.0
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCc
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDF 29 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~ 29 (103)
|..+.+.+-|+|+-+.-++.+.+..|+++
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 67788999999999999999988888765
No 295
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=23.76 E-value=1.3e+02 Score=19.07 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=13.3
Q ss_pred CCCCCCceEEECCEEEee
Q psy14325 46 MPFGKMPVLEVDGKQLHQ 63 (103)
Q Consensus 46 ~p~~~vP~l~~~~~~l~e 63 (103)
..-..+|.++.+|..+..
T Consensus 163 ~gI~gtPtfiInGky~v~ 180 (207)
T PRK10954 163 LQLRGVPAMFVNGKYMVN 180 (207)
T ss_pred cCCCCCCEEEECCEEEEc
Confidence 445679999999886544
No 296
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=23.70 E-value=1.2e+02 Score=17.43 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=29.1
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecCC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD 37 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~ 37 (103)
+-|++-++++-+..++.+++..+.++..+.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~ 35 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSD 35 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccc
Confidence 5688999999999999999999999988888764
No 297
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=23.65 E-value=1.2e+02 Score=19.10 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=27.9
Q ss_pred CccEEEeeCCCCCcHHHHHHHHhcCCCcEEEE
Q psy14325 2 PSYKLYYFPIKGLAEPIRFILSYMEQDFEDIR 33 (103)
Q Consensus 2 ~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~ 33 (103)
..+.|.++.+++-+---|.+++..|.+|-+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 35889999999999999999999999986543
No 298
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=23.37 E-value=2.8e+02 Score=20.33 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHhcCCCcEE
Q psy14325 12 KGLAEPIRFILSYMEQDFED 31 (103)
Q Consensus 12 ~~~~~~vr~~l~~~gi~~~~ 31 (103)
.+..+-++-+|+..|+.+..
T Consensus 203 ~gd~~elk~lL~~~Gl~v~~ 222 (475)
T PRK14478 203 AGELWQVKPLLDRLGIRVVA 222 (475)
T ss_pred CCCHHHHHHHHHHcCCeEEE
Confidence 34556778888888888774
No 299
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=23.36 E-value=1.1e+02 Score=21.53 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=18.9
Q ss_pred CCCceEEEC-----C---EEEeehHHHHHHHHHhcCC
Q psy14325 49 GKMPVLEVD-----G---KQLHQSAAICRYLAKQCGL 77 (103)
Q Consensus 49 ~~vP~l~~~-----~---~~l~eS~aI~~yL~~~~~l 77 (103)
.+||+|+.+ | ...++...|++.|++.+||
T Consensus 339 ~RVP~ivISP~~k~G~v~~~~ydh~Silrtie~~~gL 375 (376)
T PF04185_consen 339 PRVPAIVISPYAKGGTVDHTPYDHTSILRTIEERFGL 375 (376)
T ss_dssp -B--EEEESTTB-TTEEE---EETHHHHHHHHHHHT-
T ss_pred ccCCeEEeCCCCCCCcEeCCccchhHHHHHHHHHhCC
Confidence 479998873 3 3478889999999998875
No 300
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=23.33 E-value=1.2e+02 Score=20.43 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCcEEEEecCCC---cc-ccCCCCCCCCCceEEECCEEEe
Q psy14325 17 PIRFILSYMEQDFEDIRIEKDN---WP-ALKPKMPFGKMPVLEVDGKQLH 62 (103)
Q Consensus 17 ~vr~~l~~~gi~~~~~~v~~~~---~~-~~~~~~p~~~vP~l~~~~~~l~ 62 (103)
.+.-.++..|+++++..+..++ .+ -|.--...+-+||-..++..+.
T Consensus 213 ~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~id~~~~~ 262 (286)
T PRK06680 213 TLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQIDGKQIG 262 (286)
T ss_pred HHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEECCEECC
Confidence 3444567789999998887643 22 3444456688899888876553
No 301
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=23.32 E-value=2.2e+02 Score=19.07 Aligned_cols=33 Identities=6% Similarity=0.053 Sum_probs=23.7
Q ss_pred cEEEeeCCCCCcH----HHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAE----PIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~----~vr~~l~~~gi~~~~~~v~~ 36 (103)
+-+++-..||+|. .++.+.+..|+++--+.+|-
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 3455567799998 46677778888877777664
No 302
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=23.20 E-value=1.4e+02 Score=16.06 Aligned_cols=16 Identities=6% Similarity=-0.253 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14325 84 EDLQIDIAFETFNDFR 99 (103)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (103)
.+..|..|+.|+..-|
T Consensus 9 t~~~V~~WL~Wa~~ef 24 (75)
T cd08531 9 TREHVRQWLEWAVKEY 24 (75)
T ss_pred CHHHHHHHHHHHHHHc
Confidence 3678888888886654
No 303
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=22.92 E-value=1.2e+02 Score=20.24 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=29.2
Q ss_pred HHHhcCCCcEEEEecCCC---cc-ccCCCCCCCCCceEEECCEEE
Q psy14325 21 ILSYMEQDFEDIRIEKDN---WP-ALKPKMPFGKMPVLEVDGKQL 61 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~---~~-~~~~~~p~~~vP~l~~~~~~l 61 (103)
.+...|+++++..++..+ .+ -|.--+..|-+||-..++..+
T Consensus 219 ~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i~~~~~ 263 (288)
T PRK08320 219 IAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKVDGRVI 263 (288)
T ss_pred HHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEEECCEEC
Confidence 566779999999888643 22 344456678999988877654
No 304
>KOG0730|consensus
Probab=22.80 E-value=89 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=26.8
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEE
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDI 32 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~ 32 (103)
.+-||+-|+|+....+|.+..+.+..|-.+
T Consensus 470 GVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred eEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 467899999999999999999999998766
No 305
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=22.21 E-value=1.5e+02 Score=20.04 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHhcCCCcEEEEecCCC----ccccCCCCCCCCCceEEECCEEEe
Q psy14325 21 ILSYMEQDFEDIRIEKDN----WPALKPKMPFGKMPVLEVDGKQLH 62 (103)
Q Consensus 21 ~l~~~gi~~~~~~v~~~~----~~~~~~~~p~~~vP~l~~~~~~l~ 62 (103)
.++..|+++++..+..++ .+-|.--...|-+||-..++..+.
T Consensus 220 ~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~id~~~~~ 265 (299)
T PRK12479 220 LCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVDSREIG 265 (299)
T ss_pred HHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEECCEEcC
Confidence 556779999999888743 233555566788999888876653
No 306
>PLN02309 5'-adenylylsulfate reductase
Probab=22.21 E-value=2.2e+02 Score=21.01 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=31.3
Q ss_pred cEEEeeCCCCCcHHHHHHHHh-----cCCCcEEEEecCC-CccccCC-CCCCCCCceEEE
Q psy14325 4 YKLYYFPIKGLAEPIRFILSY-----MEQDFEDIRIEKD-NWPALKP-KMPFGKMPVLEV 56 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~-----~gi~~~~~~v~~~-~~~~~~~-~~p~~~vP~l~~ 56 (103)
+..||.+.|+.|+...-.++. .+-.+....++.+ ...++.. ...-..+|++..
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 557888999999876654433 2334555555554 3223322 345567898775
No 307
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=22.10 E-value=2.4e+02 Score=18.41 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=28.5
Q ss_pred EEEeeCCCCCcHHHHHHHHhcCCCcEEEE---ecCC-CccccCCCCCCCCCceEEE
Q psy14325 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIR---IEKD-NWPALKPKMPFGKMPVLEV 56 (103)
Q Consensus 5 ~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~---v~~~-~~~~~~~~~p~~~vP~l~~ 56 (103)
-||-......-.+||.-+...|||.+.+. |+.. +.-.+....-.|++|+++-
T Consensus 138 Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~g~lP~~l~ 193 (200)
T TIGR03759 138 DLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGLQGQLPAVVQ 193 (200)
T ss_pred eEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccCCCCCCEEEE
Confidence 34444434555677777777777754432 2221 1123333333788999875
No 308
>KOG3039|consensus
Probab=21.99 E-value=95 Score=21.07 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=18.6
Q ss_pred CCceEEECCEEEeehHHHHHHHHHhc
Q psy14325 50 KMPVLEVDGKQLHQSAAICRYLAKQC 75 (103)
Q Consensus 50 ~vP~l~~~~~~l~eS~aI~~yL~~~~ 75 (103)
.=||+..+| .|++-.||++|+-.+-
T Consensus 54 ~dPvit~~G-ylfdrEaILe~ilaqK 78 (303)
T KOG3039|consen 54 RDPVITPDG-YLFDREAILEYILAQK 78 (303)
T ss_pred cCCccCCCC-eeeeHHHHHHHHHHHH
Confidence 346655544 7899999999998764
No 309
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=21.99 E-value=63 Score=19.05 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=14.8
Q ss_pred ccEEEeeCCCCCcHHHHHHH
Q psy14325 3 SYKLYYFPIKGLAEPIRFIL 22 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l 22 (103)
.++.|....||+|.+..-.+
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 47788888999999875554
No 310
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=21.96 E-value=1.3e+02 Score=20.05 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=25.8
Q ss_pred ccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy14325 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRI 34 (103)
Q Consensus 3 ~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v 34 (103)
.+-||+-|+++-.--++++..+.|.++....-
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 47789999999999999999999999876543
No 311
>KOG2454|consensus
Probab=21.91 E-value=1.4e+02 Score=21.78 Aligned_cols=30 Identities=13% Similarity=-0.101 Sum_probs=24.7
Q ss_pred EEeeCCCCCcHHHHHHHHhcCCCcEEEEec
Q psy14325 6 LYYFPIKGLAEPIRFILSYMEQDFEDIRIE 35 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~ 35 (103)
+-.|.+|.|++.+|.+|+.-|-+-+.+.+-
T Consensus 226 ~~~WS~~fy~e~ir~~L~a~g~~p~LVq~i 255 (583)
T KOG2454|consen 226 HASWSGCFYFEIIRAALAAVGAPPNLVQVI 255 (583)
T ss_pred ceeeehhhHHHHHHHHHHHcCCCcchhhee
Confidence 345778899999999999999998876553
No 312
>PRK08105 flavodoxin; Provisional
Probab=21.58 E-value=1.7e+02 Score=17.60 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=22.2
Q ss_pred CCccEEEeeCCCCCcHHH----HHHHHhcCCCcEEEEe
Q psy14325 1 MPSYKLYYFPIKGLAEPI----RFILSYMEQDFEDIRI 34 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~v----r~~l~~~gi~~~~~~v 34 (103)
|+++.++|..-++.++.+ .-.|...|++.+....
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEech
Confidence 777888877777877644 3455566776654443
No 313
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=21.14 E-value=1.8e+02 Score=16.72 Aligned_cols=32 Identities=19% Similarity=0.034 Sum_probs=23.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEecC
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEK 36 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~ 36 (103)
+.||..+ ..+...+..=|+..||+|-..++..
T Consensus 17 LvL~T~~-~~~~~~~~~rL~~~~I~y~iq~v~~ 48 (101)
T PF09633_consen 17 LVLHTLP-KRYEEFAIARLERQGIDYFIQPVGN 48 (101)
T ss_dssp EEEEEEE-GGGHHHHHHHHHHTT--EEEEE-TS
T ss_pred HhhhhCC-HhhHHHHHHHHHHCCCCEEEEEcCC
Confidence 5677777 5678888889999999999888754
No 314
>KOG0623|consensus
Probab=20.93 E-value=1.5e+02 Score=21.23 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCccEEEeeCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy14325 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRI 34 (103)
Q Consensus 1 m~~~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v 34 (103)
||-.+|..+. +++.+.+|-+|++.|.+.+.+.-
T Consensus 1 ~~vv~~ld~~-agn~~si~nal~hlg~~i~~v~~ 33 (541)
T KOG0623|consen 1 DSVVTLLDYG-AGNVRSIRNALRHLGFSIKDVQT 33 (541)
T ss_pred CceEEEEecC-CccHHHHHHHHHhcCceeeeccC
Confidence 5667777776 79999999999999988877654
No 315
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=20.91 E-value=1.3e+02 Score=16.51 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=20.2
Q ss_pred CCCCCCCCCceEEE---CCE-EE-------eehHHHHHHHHHhc
Q psy14325 43 KPKMPFGKMPVLEV---DGK-QL-------HQSAAICRYLAKQC 75 (103)
Q Consensus 43 ~~~~p~~~vP~l~~---~~~-~l-------~eS~aI~~yL~~~~ 75 (103)
....+.+++||..+ +|. .+ .|-.|..+-|.+..
T Consensus 6 V~Rt~~~~LPVY~~~k~~g~~~~T~IrkI~GD~~aL~~dL~~~l 49 (87)
T PF05046_consen 6 VRRTKSGNLPVYLDIKNGGNRKITVIRKIEGDIWALKKDLRKFL 49 (87)
T ss_pred EeecCCCcccEEEEEeCCCcEeEEEEEeecCCHHHHHHHHHHHh
Confidence 45688999999886 342 22 35555555555544
No 316
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.63 E-value=3.1e+02 Score=20.34 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=40.8
Q ss_pred CCcHHHHHHHHhcCCCcEEEEecCCCccccCCCCCCCCCceEEECCEEEe--ehHHHHHHHHHhcC--CCCCCHHHHHHH
Q psy14325 13 GLAEPIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLH--QSAAICRYLAKQCG--LNGKDAWEDLQI 88 (103)
Q Consensus 13 ~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~~~l~--eS~aI~~yL~~~~~--l~~~~~~~~~~~ 88 (103)
....-++-+|+..|+.+..+.-.-..-+++.+ .|...+=+ ++. .....++||.++|| +....|..-...
T Consensus 175 ~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NI------v~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~~T 247 (511)
T TIGR01278 175 HDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNI------CPYREIGLMAAEYLKEKFGQPYITTTPIGVNAT 247 (511)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEE------EechHHHHHHHHHHHHHhCCCcccccccCHHHH
Confidence 46688999999999998866322111122222 23222211 122 12457899998886 221233333344
Q ss_pred HHHHHHHHHH
Q psy14325 89 DIAFETFNDF 98 (103)
Q Consensus 89 ~~~~~~~~~~ 98 (103)
+.|+..+.++
T Consensus 248 ~~fL~~l~~~ 257 (511)
T TIGR01278 248 RRFIREIAAL 257 (511)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 317
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=20.59 E-value=1.7e+02 Score=16.40 Aligned_cols=22 Identities=9% Similarity=-0.215 Sum_probs=15.6
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHH
Q psy14325 78 NGKDAW--EDLQIDIAFETFNDFR 99 (103)
Q Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~ 99 (103)
.|.+|. .+..|..|+.|+.+-|
T Consensus 13 IP~DP~~Wt~~hV~~WL~Wa~~ef 36 (91)
T cd08541 13 VPADPTLWTQEHVRQWLEWAIKEY 36 (91)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHc
Confidence 456653 3778899999887654
No 318
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=20.28 E-value=1.3e+02 Score=16.57 Aligned_cols=19 Identities=0% Similarity=-0.122 Sum_probs=15.6
Q ss_pred cHHHHHHHHhcCCCcEEEE
Q psy14325 15 AEPIRFILSYMEQDFEDIR 33 (103)
Q Consensus 15 ~~~vr~~l~~~gi~~~~~~ 33 (103)
...+..+.+++|+||.++.
T Consensus 44 v~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 44 MTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 3477888999999998875
No 319
>KOG0335|consensus
Probab=20.11 E-value=1.1e+02 Score=22.77 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=47.6
Q ss_pred EEeeCCCCCcHHHHHHHHhcCCCcEEEEecCCC--ccccCCCCCCCCCceEEEC-----C--------EEEeeh-HHHHH
Q psy14325 6 LYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN--WPALKPKMPFGKMPVLEVD-----G--------KQLHQS-AAICR 69 (103)
Q Consensus 6 Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~p~~~vP~l~~~-----~--------~~l~eS-~aI~~ 69 (103)
+.....--.|-.+-.+|...|.+++.++.+..+ .+.-+..+-.|+.|+|+-. | .+.+|- ..|-+
T Consensus 341 lvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~ 420 (482)
T KOG0335|consen 341 LVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDD 420 (482)
T ss_pred EEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhh
Confidence 333343445677888899999999999988754 3456778899999999962 2 233442 33777
Q ss_pred HHHHh
Q psy14325 70 YLAKQ 74 (103)
Q Consensus 70 yL~~~ 74 (103)
|+-+-
T Consensus 421 YvHRI 425 (482)
T KOG0335|consen 421 YVHRI 425 (482)
T ss_pred HHHhc
Confidence 77764
No 320
>KOG0733|consensus
Probab=20.08 E-value=1.2e+02 Score=23.74 Aligned_cols=31 Identities=19% Similarity=-0.005 Sum_probs=27.2
Q ss_pred cEEEeeCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy14325 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRI 34 (103)
Q Consensus 4 ~~Ly~~~~~~~~~~vr~~l~~~gi~~~~~~v 34 (103)
+-|++-|+|+-..-++.++.+.|+||-.+.-
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isA 256 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISA 256 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEeecc
Confidence 6688889999999999999999999876644
Done!