RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14325
(103 letters)
>gnl|CDD|239337 cd03039, GST_N_Sigma_like, GST_N family, Class Sigma_like;
composed of GSTs belonging to class Sigma and similar
proteins, including GSTs from class Mu, Pi and Alpha.
GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. Vertebrate class Sigma GSTs
are characterized as GSH-dependent hematopoietic
prostaglandin (PG) D synthases and are responsible for
the production of PGD2 by catalyzing the isomerization
of PGH2. The functions of PGD2 include the maintenance
of body temperature, inhibition of platelet
aggregation, bronchoconstriction, vasodilation and
mediation of allergy and inflammation. Other class
Sigma members include the class II insect GSTs,
S-crystallins from cephalopods and 28-kDa GSTs from
parasitic flatworms. Drosophila GST2 is associated with
indirect flight muscle and exhibits preference for
catalyzing GSH conjugation to lipid peroxidation
products, indicating an anti-oxidant role. S-crystallin
constitutes the major lens protein in cephalopod eyes
and is responsible for lens transparency and proper
refractive index. The 28-kDa GST from Schistosoma is a
multifunctional enzyme, exhibiting GSH transferase, GSH
peroxidase and PGD2 synthase activities, and may play
an important role in host-parasite interactions. Also
members are novel GSTs from the fungus Cunninghamella
elegans, designated as class Gamma, and from the
protozoan Blepharisma japonicum, described as a
light-inducible GST.
Length = 72
Score = 112 bits (283), Expect = 2e-34
Identities = 40/72 (55%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Query: 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPA--LKPKMPFGKMPVLEVDGKQL 61
YKL YF I+G EPIR +L+ ++ED+RI + WP LKP +PFG++PVLE+DGK+L
Sbjct: 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKL 60
Query: 62 HQSAAICRYLAK 73
QS AI RYLA+
Sbjct: 61 TQSNAILRYLAR 72
>gnl|CDD|239374 cd03076, GST_N_Pi, GST_N family, Class Pi subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Pi GST is a homodimeric eukaryotic
protein. The human GSTP1 is mainly found in
erythrocytes, kidney, placenta and fetal liver. It is
involved in stress responses and in cellular
proliferation pathways as an inhibitor of JNK (c-Jun
N-terminal kinase). Following oxidative stress,
monomeric GSTP1 dissociates from JNK and dimerizes,
losing its ability to bind JNK and causing an increase
in JNK activity, thereby promoting apoptosis. GSTP1 is
expressed in various tumors and is the predominant GST
in a wide range of cancer cells. It has been implicated
in the development of multidrug-resistant tumours.
Length = 73
Score = 88.5 bits (220), Expect = 8e-25
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWP-ALKPKMPFGKMPVLEVDGKQL 61
Y L YFP++G AE IR +L+ +E+ R+ + W +LKPKM FG++P + L
Sbjct: 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTL 60
Query: 62 HQSAAICRYLAK 73
QS AI R+L +
Sbjct: 61 VQSNAILRHLGR 72
>gnl|CDD|238319 cd00570, GST_N_family, Glutathione S-transferase (GST) family,
N-terminal domain; a large, diverse group of cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK
subfamily, a member of the DsbA family). Soluble GSTs
bear no structural similarity to microsomal GSTs (MAPEG
family) and display additional activities unique to
their group, such as catalyzing thiolysis, reduction
and isomerization of certain compounds. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. Based on sequence
similarity, different classes of GSTs have been
identified, which display varying tissue distribution,
substrate specificities and additional specific
activities. In humans, GSTs display polymorphisms which
may influence individual susceptibility to diseases
such as cancer, arthritis, allergy and sclerosis. Some
GST family members with non-GST functions include
glutaredoxin 2, the CLIC subfamily of anion channels,
prion protein Ure2p, crystallins, metaxin 2 and
stringent starvation protein A.
Length = 71
Score = 79.2 bits (196), Expect = 3e-21
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWP--ALKPKMPFGKMPVLEVDGKQL 61
KLYYFP + +R L +E + ++ P GK+PVLE G L
Sbjct: 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVL 60
Query: 62 HQSAAICRYLA 72
+S AI YLA
Sbjct: 61 TESLAILEYLA 71
>gnl|CDD|217234 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain.
Function: conjugation of reduced glutathione to a
variety of targets. Also included in the alignment, but
are not GSTs: * S-crystallins from squid. Similarity to
GST previously noted. * Eukaryotic elongation factors
1-gamma. Not known to have GST activity; similarity not
previously recognised. * HSP26 family of stress-related
proteins. including auxin-regulated proteins in plants
and stringent starvation proteins in E. coli. Not known
to have GST activity. Similarity not previously
recognised. The glutathione molecule binds in a cleft
between N and C-terminal domains - the catalytically
important residues are proposed to reside in the
N-terminal domain.
Length = 74
Score = 69.2 bits (170), Expect = 3e-17
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDN------WPALKPKMPFGKMPVLEVD 57
L F +G AE R +L+ ++ED+R++ W L P M G++P LE
Sbjct: 1 STLTLFNGRGRAERCRILLAAKGVEYEDVRVDFSGEHKSPEWLKLNPLM--GQVPALEDG 58
Query: 58 GKQLHQSAAICRYLAK 73
GK+L +S AI RYLA+
Sbjct: 59 GKKLTESLAIARYLAR 74
>gnl|CDD|239354 cd03056, GST_N_4, GST_N family, unknown subfamily 4; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 54.9 bits (133), Expect = 1e-11
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW----PALKPKMPFGKMPVLEVDGK 59
KLY FP+ G +R +L+ + +E + ++ P P G++PVLE+DG+
Sbjct: 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGR 60
Query: 60 QLHQSAAICRYLA 72
L +S AI YLA
Sbjct: 61 VLAESNAILVYLA 73
>gnl|CDD|239373 cd03075, GST_N_Mu, GST_N family, Class Mu subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. The class Mu subfamily is composed of
eukaryotic GSTs. In rats, at least six distinct class
Mu subunits have been identified, with homologous genes
in humans for five of these subunits. Class Mu GSTs can
form homodimers and heterodimers, giving a large number
of possible isoenzymes that can be formed, all with
overlapping activities but different substrate
specificities. They are the most abundant GSTs in human
liver, skeletal muscle and brain, and are believed to
provide protection against diseases including cancer
and neurodegenerative disorders. Some isoenzymes have
additional specific functions. Human GST M1-1 acts as
an endogenous inhibitor of ASK1 (apoptosis
signal-regulating kinase 1), thereby suppressing
ASK1-mediated cell death. Human GSTM2-2 and 3-3 have
been identified as prostaglandin E2 synthases in the
brain and may play crucial roles in temperature and
sleep-wake regulation.
Length = 82
Score = 54.3 bits (131), Expect = 2e-11
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIRIE--------KDNWPALKPKM--PFGKMPVL 54
L Y+ I+GLA+PIR +L Y + +E+ R E + W K K+ F +P
Sbjct: 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYY 61
Query: 55 EVDGKQLHQSAAICRYLAKQ 74
+L QS AI RY+A++
Sbjct: 62 IDGDVKLTQSNAILRYIARK 81
>gnl|CDD|205595 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain.
Length = 75
Score = 51.4 bits (124), Expect = 3e-10
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 6 LYYFPIKGLAEPIRFILSYMEQDFEDIRIE-KDNWPALKPKMPFGKMPVLEVDGKQLHQS 64
LY P A +R L +E++ + D P L P GK+PVL DG+ L S
Sbjct: 1 LYGSPTSPYARKVRLALREKGLPYEEVEVPPGDKPPELLALNPLGKVPVLVDDGEVLTDS 60
Query: 65 AAICRYLAKQCG 76
AI YL +
Sbjct: 61 LAIIEYLEELFP 72
>gnl|CDD|173353 PTZ00057, PTZ00057, glutathione s-transferase; Provisional.
Length = 205
Score = 53.8 bits (129), Expect = 4e-10
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 6 LYYFPIKGLAEPIRFILSYMEQDFEDIR--------IEKDNWPALKPKMPFGKMPVLEVD 57
LYYF +G AE IR I +Y+ ++ D R IE N+ K PF ++P+LE+D
Sbjct: 7 LYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEK-DTPFEQVPILEMD 65
Query: 58 GKQLHQSAAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQRNN 103
QS AI RYL+K+ + G+ + D+ F D + N
Sbjct: 66 NIIFAQSQAIVRYLSKKYKICGESELNEFYADMIFCGVQDIHYKFN 111
>gnl|CDD|222110 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain.
This family is closely related to pfam02798.
Length = 68
Score = 47.6 bits (114), Expect = 8e-09
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 18 IRFILSYMEQDFEDIRIEKDNW---PALKPKMPFGKMPVLEV-DGKQLHQSAAICRYLAK 73
+R L +E + D W P L P GK+PVL + DG+ + S AI YL +
Sbjct: 8 VRLALELKGLPYEIEEVPLDPWDKPPELLALNPLGKVPVLVLDDGEVITDSLAILEYLEE 67
Query: 74 Q 74
Sbjct: 68 L 68
>gnl|CDD|239344 cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae
GTT1-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT1, and the
Schizosaccharomyces pombe GST-III. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT1, a
homodimer, exhibits GST activity with standard
substrates and associates with the endoplasmic
reticulum. Its expression is induced after diauxic
shift and remains high throughout the stationary phase.
S. pombe GST-III is implicated in the detoxification of
various metals.
Length = 76
Score = 47.9 bits (115), Expect = 8e-09
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW----PALKPKMPFGKMPVLEVDGK 59
LY+ P + + I ++L + +E + ++ P P GK+PVL
Sbjct: 1 ITLYHLP-RSRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDL 59
Query: 60 QLHQSAAICRYLAKQCG 76
L +SAAI YLA++ G
Sbjct: 60 VLTESAAIILYLAEKYG 76
>gnl|CDD|239375 cd03077, GST_N_Alpha, GST_N family, Class Alpha subfamily; GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. The class Alpha subfamily is composed of
eukaryotic GSTs which can form homodimer and
heterodimers. There are at least six types of class
Alpha GST subunits in rats, four of which have human
counterparts, resulting in many possible isoenzymes
with different activities, tissue distribution and
substrate specificities. Human GSTA1-1 and GSTA2-2 show
high GSH peroxidase activity. GSTA3-3 catalyzes the
isomerization of intermediates in steroid hormone
biosynthesis. GSTA4-4 preferentially catalyzes the GSH
conjugation of alkenals.
Length = 79
Score = 45.6 bits (108), Expect = 6e-08
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 5 KLYYFPIKGLAEPIRFILSYMEQDFEDIRIE-KDNWPALKPK--MPFGKMPVLEVDGKQL 61
L+YF +G E IR++L+ +FE+ IE ++ LK + F ++P++E+DG +L
Sbjct: 3 VLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKL 62
Query: 62 HQSAAICRYLAKQCGL 77
Q+ AI Y+A + L
Sbjct: 63 VQTRAILNYIAGKYNL 78
>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones].
Length = 211
Score = 47.5 bits (113), Expect = 8e-08
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 4 YKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNW---PALKPKMPFGKMPVLEV-DGK 59
KLY P + +R L +E + ++ D P P GK+P L DG+
Sbjct: 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGE 60
Query: 60 QLHQSAAICRYLA 72
L +S AI YLA
Sbjct: 61 VLTESGAILEYLA 73
>gnl|CDD|239351 cd03053, GST_N_Phi, GST_N family, Class Phi subfamily; composed
of plant-specific class Phi GSTs and related fungal and
bacterial proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. The class Phi GST subfamily
has experience extensive gene duplication. The
Arabidopsis and Oryza genomes contain 13 and 16 Phi
GSTs, respectively. They are primarily responsible for
herbicide detoxification together with class Tau GSTs,
showing class specificity in substrate preference. Phi
enzymes are highly reactive toward chloroacetanilide
and thiocarbamate herbicides. Some Phi GSTs have other
functions including transport of flavonoid pigments to
the vacuole, shoot regeneration and GSH peroxidase
activity.
Length = 76
Score = 41.9 bits (99), Expect = 2e-06
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 47 PFGKMPVLEVDGKQLHQSAAICRYLAKQ 74
PFG++P LE +L +S AI RYLA++
Sbjct: 49 PFGQIPALEDGDLKLFESRAITRYLAEK 76
>gnl|CDD|239355 cd03057, GST_N_Beta, GST_N family, Class Beta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Unlike mammalian GSTs which detoxify a broad
range of compounds, the bacterial class Beta GSTs
exhibit limited GSH conjugating activity with a narrow
range of substrates. In addition to GSH conjugation,
they also bind antibiotics and reduce the antimicrobial
activity of beta-lactam drugs. The structure of the
Proteus mirabilis enzyme reveals that the cysteine in
the active site forms a covalent bond with GSH.
Length = 77
Score = 40.2 bits (95), Expect = 6e-06
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 4 YKLYYFPIKG-LAEPIRFILSYMEQDFEDIRIE-------KDNWPALKPKMPFGKMPVLE 55
KLYY P LA L + FE +R++ ++ A+ PK G++P L
Sbjct: 1 MKLYYSPGACSLA--PHIALEELGLPFELVRVDLRTKTQKGADYLAINPK---GQVPALV 55
Query: 56 V-DGKQLHQSAAICRYLAKQ 74
+ DG+ L +SAAI +YLA
Sbjct: 56 LDDGEVLTESAAILQYLADL 75
>gnl|CDD|166114 PLN02473, PLN02473, glutathione S-transferase.
Length = 214
Score = 42.3 bits (99), Expect = 7e-06
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 15 AEPIRFILSYMEQD--FEDIRIEKDNWPALKP----KMPFGKMPVLEVDGKQLHQSAAIC 68
A P R +L ++E+ FE I ++ D KP + PFG++P +E +L +S AI
Sbjct: 12 ANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIA 71
Query: 69 RYLAKQCGLNGKD 81
RY A + G D
Sbjct: 72 RYYATKYADQGTD 84
>gnl|CDD|239353 cd03055, GST_N_Omega, GST_N family, Class Omega subfamily; GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Omega GSTs show little or no
GSH-conjugating activity towards standard GST
substrates. Instead, they catalyze the GSH dependent
reduction of protein disulfides, dehydroascorbate and
monomethylarsonate, activities which are more
characteristic of glutaredoxins. They contain a
conserved cysteine equivalent to the first cysteine in
the CXXC motif of glutaredoxins, which is a redox
active residue capable of reducing GSH mixed disulfides
in a monothiol mechanism. Polymorphisms of the class
Omega GST genes may be associated with the development
of some types of cancer and the age-at-onset of both
Alzheimer's and Parkinson's diseases.
Length = 89
Score = 38.9 bits (91), Expect = 3e-05
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 3 SYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKDNWPA-LKPKMPFGKMPVLEVD-GKQ 60
+LY A+ R +L+ E I I + P K P GK+P LE+D GK
Sbjct: 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKV 77
Query: 61 LHQSAAICRYL 71
+++S IC YL
Sbjct: 78 VYESLIICEYL 88
>gnl|CDD|239349 cd03051, GST_N_GTT2_like, GST_N family, Saccharomyces cerevisiae
GTT2-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT2. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT2, a
homodimer, exhibits GST activity with standard
substrates. Strains with deleted GTT2 genes are viable
but exhibit increased sensitivity to heat shock.
Length = 74
Score = 36.9 bits (86), Expect = 1e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 40 PALKPKMPFGKMPVLEV-DGKQLHQSAAICRYL 71
P K P G +PVLE+ DG + +S AICRYL
Sbjct: 41 PEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73
>gnl|CDD|239342 cd03044, GST_N_EF1Bgamma, GST_N family, Gamma subunit of
Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma
is part of the eukaryotic translation elongation
factor-1 (EF1) complex which plays a central role in
the elongation cycle during protein biosynthesis. EF1
consists of two functionally distinct units, EF1A and
EF1B. EF1A catalyzes the GTP-dependent binding of
aminoacyl-tRNA to the ribosomal A site concomitant with
the hydrolysis of GTP. The resulting inactive EF1A:GDP
complex is recycled to the active GTP form by the
guanine-nucleotide exchange factor EF1B, a complex
composed of at least two subunits, alpha and gamma.
Metazoan EFB1 contain a third subunit, beta. The EF1B
gamma subunit contains a GST fold consisting of an
N-terminal TRX-fold domain and a C-terminal alpha
helical domain. The GST-like domain of EF1Bgamma is
believed to mediate the dimerization of the EF1
complex, which in yeast is a dimer of the heterotrimer
EF1A:EF1Balpha:EF1Bgamma. In addition to its role in
protein biosynthesis, EF1Bgamma may also display other
functions. The recombinant rice protein has been shown
to possess GSH conjugating activity. The yeast
EF1Bgamma binds membranes in a calcium dependent manner
and is also part of a complex that binds to the msrA
(methionine sulfoxide reductase) promoter suggesting a
function in the regulation of its gene expression.
Length = 75
Score = 36.5 bits (85), Expect = 2e-04
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 40 PALKPKMPFGKMPVLE-VDGKQLHQSAAICRYLAKQ 74
P K P GK+P E DG L +S AI Y+A
Sbjct: 40 PEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVANL 75
>gnl|CDD|239340 cd03042, GST_N_Zeta, GST_N family, Class Zeta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Zeta GSTs, also known as
maleylacetoacetate (MAA) isomerases, catalyze the
isomerization of MAA to fumarylacetoacetate, the
penultimate step in tyrosine/phenylalanine catabolism,
using GSH as a cofactor. They show little
GSH-conjugating activity towards traditional GST
substrates but display modest GSH peroxidase activity.
They are also implicated in the detoxification of the
carcinogen dichloroacetic acid by catalyzing its
dechlorination to glyoxylic acid.
Length = 73
Score = 36.4 bits (85), Expect = 2e-04
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 47 PFGKMPVLEVDGKQLHQSAAICRYL 71
P G +P L +DG L QS AI YL
Sbjct: 48 PQGLVPTLVIDGLVLTQSLAIIEYL 72
>gnl|CDD|239347 cd03049, GST_N_3, GST_N family, unknown subfamily 3; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 36.1 bits (84), Expect = 2e-04
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 5 KLYYFPIKGLAEPIRFILSYMEQ--DFEDIRIEK-DNWPALKPKMPFGKMPVLEV-DGKQ 60
KL Y P +R D E + + + +L P GK+P L + DG+
Sbjct: 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEA 61
Query: 61 LHQSAAICRYL 71
L S IC YL
Sbjct: 62 LFDSRVICEYL 72
>gnl|CDD|239348 cd03050, GST_N_Theta, GST_N family, Class Theta subfamily;
composed of eukaryotic class Theta GSTs and bacterial
dichloromethane (DCM) dehalogenase. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. Mammalian
class Theta GSTs show poor GSH conjugating activity
towards the standard substrates, CDNB and ethacrynic
acid, differentiating them from other mammalian GSTs.
GSTT1-1 shows similar cataytic activity as bacterial
DCM dehalogenase, catalyzing the GSH-dependent
hydrolytic dehalogenation of dihalomethanes. This is an
essential process in methylotrophic bacteria to enable
them to use chloromethane and DCM as sole carbon and
energy sources. The presence of polymorphisms in human
GSTT1-1 and its relationship to the onset of diseases
including cancer is subject of many studies. Human
GSTT2-2 exhibits a highly specific sulfatase activity,
catalyzing the cleavage of sulfate ions from aralkyl
sufate esters, but not from aryl or alkyl sulfate
esters.
Length = 76
Score = 36.1 bits (84), Expect = 3e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 5 KLYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKDNWPALKPKM----PFGKMPVLEVD 57
KLYY +++P R + +++ FE+ I+ L P+ PFGK+P +
Sbjct: 2 KLYYDL---MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDG 58
Query: 58 GKQLHQSAAICRYLAKQ 74
L +S AI RYLA++
Sbjct: 59 DFTLAESVAILRYLARK 75
>gnl|CDD|239376 cd03078, GST_N_Metaxin1_like, GST_N family, Metaxin subfamily,
Metaxin 1-like proteins; composed of metaxins 1 and 3,
and similar proteins including Tom37 from fungi.
Mammalian metaxin (or metaxin 1) and the fungal protein
Tom37 are components of preprotein import complexes of
the mitochondrial outer membrane. Metaxin extends to
the cytosol and is anchored to the mitochondrial
membrane through its C-terminal domain. In mice,
metaxin is required for embryonic development. Like the
murine gene, the human metaxin gene is located
downstream to the glucocerebrosidase (GBA) pseudogene
and is convergently transcribed. Inherited deficiency
of GBA results in Gaucher disease, which presents many
diverse clinical phenotypes. Alterations in the metaxin
gene, in addition to GBA mutations, may be associated
with Gaucher disease. Genome sequencing shows that a
third metaxin gene also exists in zebrafish, Xenopus,
chicken and mammals.
Length = 73
Score = 33.0 bits (76), Expect = 0.003
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 31 DIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74
+++ N P P GK+P L G ++ I YL KQ
Sbjct: 32 PLKVVPSNNPWRSPT---GKLPALLTSGTKISGPEKIIEYLRKQ 72
>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The sequence from
Burkholderia cepacia was identified as part of a gene
cluster involved in the degradation of
2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g.
Class Zeta and Delta) are known to catalyze
dechlorination reactions.
Length = 73
Score = 33.1 bits (76), Expect = 0.003
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 47 PFGKMPVLEVDGKQLHQSAAICRYLA 72
P G++PVLE L +S AI RYLA
Sbjct: 48 PNGRVPVLEDGDFVLWESNAILRYLA 73
>gnl|CDD|239352 cd03054, GST_N_Metaxin, GST_N family, Metaxin subfamily; composed
of metaxins and related proteins. Metaxin 1 is a
component of a preprotein import complex of the
mitochondrial outer membrane. It extends to the cytosol
and is anchored to the mitochondrial membrane through
its C-terminal domain. In mice, metaxin is required for
embryonic development. In humans, alterations in the
metaxin gene may be associated with Gaucher disease.
Metaxin 2 binds to metaxin 1 and may also play a role
in protein translocation into the mitochondria. Genome
sequencing shows that a third metaxin gene also exists
in zebrafish, Xenopus, chicken and mammals. Sequence
analysis suggests that all three metaxins share a
common ancestry and that they possess similarity to
GSTs. Also included in the subfamily are
uncharacterized proteins with similarity to metaxins,
including a novel GST from Rhodococcus with toluene
o-monooxygenase and glutamylcysteine synthetase
activities.
Length = 72
Score = 33.0 bits (76), Expect = 0.003
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 31 DIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74
+ + P P GK+P LE++G+++ S I YL K+
Sbjct: 32 PYEVVFSSNPWRSPT---GKLPFLELNGEKIADSEKIIEYLKKK 72
>gnl|CDD|233333 TIGR01262, maiA, maleylacetoacetate isomerase.
Maleylacetoacetate isomerase is an enzyme of tyrosine
and phenylalanine catabolism. It requires glutathione
and belongs by homology to the zeta family of
glutathione S-transferases. The enzyme (EC 5.2.1.2) is
described as active also on maleylpyruvate, and the
example from a Ralstonia sp. catabolic plasmid is
described as a maleylpyruvate isomerase involved in
gentisate catabolism [Energy metabolism, Amino acids
and amines].
Length = 210
Score = 33.5 bits (77), Expect = 0.010
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 32 IRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74
+R + P P G +P L++DG+ L QS AI YL +
Sbjct: 33 LRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEET 75
>gnl|CDD|239341 cd03043, GST_N_1, GST_N family, unknown subfamily 1; composed of
uncharacterized proteins, predominantly from bacteria,
with similarity to GSTs. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains.
Length = 73
Score = 31.4 bits (72), Expect = 0.016
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 28 DFEDIRIEKDNWPALKPKM----PFGKMPVLEVDGKQLHQSAAICRYLA 72
FE+I + P + ++ P GK+PVL G + S AIC YLA
Sbjct: 26 PFEEILVPLYT-PDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73
>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
Length = 215
Score = 31.4 bits (71), Expect = 0.053
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 15 AEPIRFILSYMEQ--DFEDIRIE----KDNWPALKPKMPFGKMPVLEVDGKQLHQSAAIC 68
A P R +++ +E+ +FE + ++ + P PFG +PV+ ++ +S AI
Sbjct: 11 ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIM 70
Query: 69 RYLAKQCGLNGKD 81
RY A++ G D
Sbjct: 71 RYYAEKYRSQGPD 83
>gnl|CDD|222627 pfam14254, DUF4348, Domain of unknown function (DUF4348).
Length = 273
Score = 30.0 bits (68), Expect = 0.15
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 9 FPIKGLAEPIRFILSYMEQDFEDIR--IEKDNWPALKPKMPFGKM 51
F + + EP+ F+ + +F + ++ + WPA KP++P G +
Sbjct: 186 FQSRHVHEPLAFVTPDPDDEFSILETTLDAEQWPAFKPELPKGMI 230
>gnl|CDD|185068 PRK15113, PRK15113, glutathione S-transferase; Provisional.
Length = 214
Score = 29.2 bits (66), Expect = 0.24
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 49 GKMPVLEVDGKQLHQSAAICRYL 71
++P L+ D +L +S+AI YL
Sbjct: 57 RRVPTLQHDDFELSESSAIAEYL 79
>gnl|CDD|239378 cd03080, GST_N_Metaxin_like, GST_N family, Metaxin subfamily,
Metaxin-like proteins; a heterogenous group of
proteins, predominantly uncharacterized, with
similarity to metaxins and GSTs. Metaxin 1 is a
component of a preprotein import complex of the
mitochondrial outer membrane. It extends to the cytosol
and is anchored to the mitochondrial membrane through
its C-terminal domain. In mice, metaxin is required for
embryonic development. In humans, alterations in the
metaxin gene may be associated with Gaucher disease.
One characterized member of this subgroup is a novel
GST from Rhodococcus with toluene o-monooxygenase and
gamma-glutamylcysteine synthetase activities. Also
members are the cadmium-inducible lysosomal protein
CDR-1 and its homologs from C. elegans, and the failed
axon connections (fax) protein from Drosophila. CDR-1
is an integral membrane protein that functions to
protect against cadmium toxicity and may also have a
role in osmoregulation to maintain salt balance in C.
elegans. The fax gene of Drosophila was identified as a
genetic modifier of Abelson (Abl) tyrosine kinase. The
fax protein is localized in cellular membranes and is
expressed in embryonic mesoderm and axons of the
central nervous system.
Length = 75
Score = 28.0 bits (63), Expect = 0.31
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 42 LKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQ 74
L + P GK+P +E++G+++ S I +L ++
Sbjct: 41 LAKRSPKGKLPFIELNGEKIADSELIIDHLEEK 73
>gnl|CDD|239339 cd03041, GST_N_2GST_N, GST_N family, 2 repeats of the N-terminal
domain of soluble GSTs (2 GST_N) subfamily; composed of
uncharacterized proteins. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins, and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains.
Length = 77
Score = 26.2 bits (58), Expect = 1.4
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 17 PIRFILSYMEQDFEDIRIEKDNWPALKPKMPFGKM--PVLEVD---GKQLHQSAAICRYL 71
+R +L+ +E D K + K GK+ P L VD G Q+ +SA I +YL
Sbjct: 15 LVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYL-VDPNTGVQMFESADIVKYL 73
Query: 72 AKQ 74
K
Sbjct: 74 FKT 76
>gnl|CDD|225879 COG3342, COG3342, Uncharacterized conserved protein [Function
unknown].
Length = 265
Score = 26.6 bits (59), Expect = 2.2
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 63 QSAAICRYLAKQCGLNGKDAWEDLQIDIAFETFNDFRQR 101
QSAA+ + G D + DL++D + + +
Sbjct: 161 QSAALIVVKPLGGYVGGPDYYVDLRVDDHPDPIPELERL 199
>gnl|CDD|198301 cd03192, GST_C_Sigma_like, C-terminal, alpha helical domain of
Class Sigma-like Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Class Sigma_like; composed of GSTs belonging to
class Sigma and similar proteins, including GSTs from
class Mu, Pi, and Alpha. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins, and products of oxidative stress.
The GST fold contains an N-terminal thioredoxin-fold
domain and a C-terminal alpha helical domain, with an
active site located in a cleft between the two domains.
GSH binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Vertebrate class Sigma GSTs are characterized as
GSH-dependent hematopoietic prostaglandin (PG) D
synthases and are responsible for the production of PGD2
by catalyzing the isomerization of PGH2. The functions
of PGD2 include the maintenance of body temperature,
inhibition of platelet aggregation, bronchoconstriction,
vasodilation, and mediation of allergy and inflammation.
Other class Sigma-like members include the class II
insect GSTs, S-crystallins from cephalopods,
nematode-specific GSTs, and 28-kDa GSTs from parasitic
flatworms. Drosophila GST2 is associated with indirect
flight muscle and exhibits preference for catalyzing GSH
conjugation to lipid peroxidation products, indicating
an anti-oxidant role. S-crystallin constitutes the major
lens protein in cephalopod eyes and is responsible for
lens transparency and proper refractive index. The
28-kDa GST from Schistosoma is a multifunctional enzyme,
exhibiting GSH transferase, GSH peroxidase, and PGD2
synthase activities, and may play an important role in
host-parasite interactions. Members also include novel
GSTs from the fungus Cunninghamella elegans, designated
as class Gamma, and from the protozoan Blepharisma
japonicum, described as a light-inducible GST.
Length = 104
Score = 26.0 bits (58), Expect = 2.3
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 83 WEDLQIDIAFETFNDFRQ 100
E+ ++D +T D R
Sbjct: 1 EEEARVDAIVDTIADLRA 18
>gnl|CDD|235127 PRK03467, PRK03467, hypothetical protein; Provisional.
Length = 144
Score = 26.1 bits (58), Expect = 2.9
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 65 AAICRYLAKQ-----CGLNGKDAW 83
AI R+LAKQ C + W
Sbjct: 8 TAISRWLAKQHVVTLCVGQEGELW 31
>gnl|CDD|239343 cd03045, GST_N_Delta_Epsilon, GST_N family, Class Delta and
Epsilon subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The class Delta and
Epsilon subfamily is made up primarily of insect GSTs,
which play major roles in insecticide resistance by
facilitating reductive dehydrochlorination of
insecticides or conjugating them with GSH to produce
water-soluble metabolites that are easily excreted.
They are also implicated in protection against cellular
damage by oxidative stress.
Length = 74
Score = 25.3 bits (56), Expect = 2.9
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 5 KLYYFPIKGLAEPIRFILSYMEQ---DFEDIRIEKDNWPALKP---KM-PFGKMPVLEVD 57
LYY P + P R +L + + + LKP K+ P +P L +
Sbjct: 2 DLYYLPG---SPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDN 58
Query: 58 GKQLHQSAAICRYLA 72
G L +S AI YL
Sbjct: 59 GFVLWESHAILIYLV 73
>gnl|CDD|132139 TIGR03095, rusti_cyanin, rusticyanin. Rusticyanin is a blue
copper protein, described in an obligate acidophilic
chemolithoautroph, Acidithiobacillus ferrooxidans, as
an electron transfer protein. It can constitute up to 5
percent of protein in cells grown on Fe(II) and is
thought to be part of an electron chain for Fe(II)
oxidation, with two c-type cytochromes, an aa3-type
cytochrome oxidase, and 02 as terminal electron
acceptor. It is rather closely related to sulfocyanin
(TIGR03094) [Energy metabolism, Electron transport].
Length = 148
Score = 25.6 bits (56), Expect = 5.0
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 1 MPSYKLYYFPIKGLAEPIRFILSYMEQDFEDIRIEKD---NWPALKPKMPFGKMPVLEVD 57
MP +Y F I L P I + F I + D N+ K P+ MP ++
Sbjct: 36 MPGPSMYSFEIHDLKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL 95
Query: 58 G 58
G
Sbjct: 96 G 96
>gnl|CDD|218767 pfam05827, ATP-synt_S1, Vacuolar ATP synthase subunit S1 (ATP6S1).
This family consists of eukaryotic vacuolar ATP synthase
subunit S1 proteins.
Length = 277
Score = 25.4 bits (56), Expect = 5.8
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 25/85 (29%)
Query: 30 EDIRIEKDNWPALKPKM---------PFGKMPVLE-VDGKQLHQSAAICRYLAKQCGLNG 79
D EKDN+P L+ + P+ V ++ KQL + YL K+CG
Sbjct: 59 SDFTTEKDNFPNLEAYLTGSSSALRLPYVVNEVEGWLELKQLAE------YLKKKCGA-- 110
Query: 80 KDAWEDLQIDI---AFETFNDFRQR 101
ID+ N+ R
Sbjct: 111 ----SVEIIDVSDNKEHELNESEPR 131
>gnl|CDD|227246 COG4909, PduC, Propanediol dehydratase, large subunit [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 554
Score = 25.7 bits (56), Expect = 6.2
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 17 PIR---FILSYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAK 73
P+ F+ ++E+ F I +E N P KP + V+E+DGK H I ++A+
Sbjct: 13 PVNQDGFVKEWIEEGF--IAMESPNDP--KPSIKIKNGRVIELDGKLEHDFDLIDHFIAR 68
Query: 74 QCGLNGKDAWEDLQID 89
G++ + A E + +D
Sbjct: 69 Y-GIDLERAEEVMAMD 83
>gnl|CDD|133060 cd06438, EpsO_like, EpsO protein participates in the methanolan
synthesis. The Methylobacillus sp EpsO protein is
predicted to participate in the methanolan synthesis.
Methanolan is an exopolysaccharide (EPS), composed of
glucose, mannose and galactose. A 21 genes cluster was
predicted to participate in the methanolan synthesis.
Gene disruption analysis revealed that EpsO is one of
the glycosyltransferase enzymes involved in the
synthesis of repeating sugar units onto the lipid
carrier.
Length = 183
Score = 25.3 bits (56), Expect = 6.9
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 77 LNGKDAWEDLQIDIAFETFNDFRQR 101
N D+W AF FN R
Sbjct: 120 KNPDDSWITRLYAFAFLVFNRLRPL 144
>gnl|CDD|184818 PRK14779, PRK14779, lipoprotein signal peptidase; Provisional.
Length = 159
Score = 25.1 bits (55), Expect = 7.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 19 RFILSYMEQDFEDIRIEKDNWPA 41
RF L + +DF DI I +WPA
Sbjct: 109 RFFLGQV-RDFIDIYIGDFHWPA 130
>gnl|CDD|187830 cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain;
loosely associated with CRISPR/Cas systems.
Length = 360
Score = 24.9 bits (54), Expect = 9.3
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 18 IRFIL-SYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYL 71
F+L + + + ++ D P L + + P + K +S + YL
Sbjct: 219 AEFVLRAAIAKHLPELIYLDDGMPRLNREDKLEREPKIRCALKHPPKSFNVEWYL 273
>gnl|CDD|180750 PRK06921, PRK06921, hypothetical protein; Provisional.
Length = 266
Score = 24.7 bits (54), Expect = 9.8
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 27 QDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYLAKQCGL 77
+DFE I+ + N AL + GK H A L ++ G+
Sbjct: 107 KDFEKIQESRKNSIALLGQPGSGKT----------HLLTAAANELMRKKGV 147
>gnl|CDD|131720 TIGR02672, cas_csm6, CRISPR type III-A/MTUBE-associated protein
Csm6. Members of this family as found in
CRISPR-associated (cas) gene regions in Streptococcus
thermophilus CNRZ1066, Staphylococcus epidermidis RP62A,
and Mycobacterium tuberculosis (strains CDC1551 and
H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR
is a widespread form of direct repeat found in archaea
and bacteria, with distinctive subtypes each of which
has a characteristic sporadic distribution [Mobile and
extrachromosomal element functions, Other].
Length = 362
Score = 24.9 bits (54), Expect = 9.8
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 18 IRFIL-SYMEQDFEDIRIEKDNWPALKPKMPFGKMPVLEVDGKQLHQSAAICRYL 71
F+L + + + ++ D P L + + P + K +S + YL
Sbjct: 219 AEFVLRAAIAKHLPELIYLDDGMPRLNREDKLEREPKIRCALKHPPKSFNVEWYL 273
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.445
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,445,610
Number of extensions: 456124
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 49
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)