BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14327
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum
          Length = 405

 Score = 29.6 bits (65), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 99  HHYQQVTSERGIGITLGILCIFSGALYLIDTVLS 132
             +++ T E  I +++G+ C   G L++ D+VL+
Sbjct: 21  REFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLN 54


>pdb|2H2N|A Chain A, Crystal Structure Of Human Soluble Calcium-activated
           Nucleotidase (scan) With Calcium Ion
 pdb|2H2N|B Chain B, Crystal Structure Of Human Soluble Calcium-activated
           Nucleotidase (scan) With Calcium Ion
          Length = 339

 Score = 27.3 bits (59), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 106 SERGIGITLGILCIFSGALYLIDTVLSFIHFIK 138
           +E+G G+ L  L +F+G LY +D     ++ I+
Sbjct: 97  AEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIE 129


>pdb|1S18|A Chain A, Structure And Protein Design Of Human Apyrase
 pdb|1S18|B Chain B, Structure And Protein Design Of Human Apyrase
 pdb|1S1D|A Chain A, Structure And Protein Design Of Human Apyrase
 pdb|1S1D|B Chain B, Structure And Protein Design Of Human Apyrase
          Length = 331

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 106 SERGIGITLGILCIFSGALYLIDTVLSFIHFIK 138
           +E+G G+ L  L +F+G LY +D     ++ I+
Sbjct: 89  AEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIE 121


>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
 pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
          Length = 402

 Score = 25.4 bits (54), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 9   LYRTGYGGQFLGVGGTWNLNEEKN--------PDVEIIASGVFVGYFVYTTVILISYGFG 60
           L R  YG   LG G      EEK+        P V  +A G  VGY V     + ++G G
Sbjct: 299 LGRAEYGRLGLGEGA-----EEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 353

Query: 61  TTQQ 64
           T  Q
Sbjct: 354 TNYQ 357


>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
 pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
 pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
          Length = 413

 Score = 25.4 bits (54), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 9   LYRTGYGGQFLGVGGTWNLNEEKN--------PDVEIIASGVFVGYFVYTTVILISYGFG 60
           L R  YG   LG G      EEK+        P V  +A G  VGY V     + ++G G
Sbjct: 310 LGRAEYGRLGLGEGA-----EEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 364

Query: 61  TTQQ 64
           T  Q
Sbjct: 365 TNYQ 368


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.149    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,422,761
Number of Sequences: 62578
Number of extensions: 174557
Number of successful extensions: 386
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 6
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)