Query psy14327
Match_columns 140
No_of_seqs 38 out of 40
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 17:01:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1e_A Water soluble analogue 20.7 85 0.0029 20.9 3.1 18 110-127 66-83 (103)
2 3din_D Preprotein translocase 13.3 1.9E+02 0.0066 18.4 3.3 27 108-134 28-54 (65)
3 3dl8_C SECE; RECA-type ATPase 12.5 1.9E+02 0.0066 18.4 3.1 27 108-134 28-54 (65)
4 2lfu_A GNA2132; beta-barrel, a 11.2 91 0.0031 24.1 1.4 29 14-45 147-180 (193)
5 3j1z_P YIIP, cation efflux fam 10.0 6.3E+02 0.022 19.7 6.3 30 64-95 77-107 (306)
6 3clj_A Protein NRD1; CTD-inter 9.6 1.2E+02 0.0042 22.9 1.6 11 122-132 60-70 (157)
7 2dk3_A E3 ubiquitin-protein li 9.4 1E+02 0.0035 21.7 1.0 11 8-18 62-72 (86)
8 3arc_E Cytochrome B559 subunit 9.4 97 0.0033 21.8 0.9 29 65-94 6-48 (83)
9 3hy3_A 5-formyltetrahydrofolat 9.3 73 0.0025 23.9 0.2 9 10-18 144-152 (203)
10 3um7_A Potassium channel subfa 8.9 2.2E+02 0.0076 23.4 3.0 25 70-94 198-222 (309)
No 1
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=20.73 E-value=85 Score=20.94 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=11.7
Q ss_pred hhhhhhhHHhhhhHHHHH
Q psy14327 110 IGITLGILCIFSGALYLI 127 (140)
Q Consensus 110 ~gLA~GsL~IInGa~fLv 127 (140)
.|-....+.++-|..++.
T Consensus 66 ~gr~~~~~~~l~G~~~~~ 83 (103)
T 2k1e_A 66 EGRKVAEQVMKAGIEVFA 83 (103)
T ss_dssp SCTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455667777777776643
No 2
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=13.27 E-value=1.9e+02 Score=18.36 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred cchhhhhhhHHhhhhHHHHHHHHHHHH
Q psy14327 108 RGIGITLGILCIFSGALYLIDTVLSFI 134 (140)
Q Consensus 108 R~~gLA~GsL~IInGa~fLvDavlt~~ 134 (140)
++...-.....++-..++++|.+++.+
T Consensus 28 ~~T~vViv~~~i~~~~i~~vD~~~~~~ 54 (65)
T 3din_D 28 TSFGVVLVILAVTSVYFFVLDFIFSGV 54 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777788899999999873
No 3
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=12.50 E-value=1.9e+02 Score=18.37 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=20.1
Q ss_pred cchhhhhhhHHhhhhHHHHHHHHHHHH
Q psy14327 108 RGIGITLGILCIFSGALYLIDTVLSFI 134 (140)
Q Consensus 108 R~~gLA~GsL~IInGa~fLvDavlt~~ 134 (140)
++...-.....++-..++++|.+++.+
T Consensus 28 ~~T~vViv~v~i~~~~i~~vD~~~~~~ 54 (65)
T 3dl8_C 28 KATISVIIFSLAIGVYLWILDLTFTKI 54 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677778899999999873
No 4
>2lfu_A GNA2132; beta-barrel, antigen, membrane protein; NMR {Neisseria meningitidis}
Probab=11.23 E-value=91 Score=24.12 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=19.5
Q ss_pred cCCceee-----eeeeecCCCCCCCCeeEEEeeeeee
Q psy14327 14 YGGQFLG-----VGGTWNLNEEKNPDVEIIASGVFVG 45 (140)
Q Consensus 14 y~g~flg-----vGgt~nlne~~~~d~eivasGtfvG 45 (140)
+.|.|.| +||.+.+++.++.+. +.|+|.|
T Consensus 147 ~~G~FyGpnAeElgG~f~~~~~~~~~~---~fGVFgg 180 (193)
T 2lfu_A 147 VSGRFYGPAGEEVAGKYSYRPTDAEKG---GFGVFAG 180 (193)
T ss_dssp EEEEECSTTCCEEEEEEEECSSSSCCC---SCCEEEE
T ss_pred EEEEECCCCcHHheEEEEeCCCCCCcc---EEEEEEe
Confidence 4566766 788888887665543 3477776
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=9.96 E-value=6.3e+02 Score=19.75 Aligned_cols=30 Identities=3% Similarity=-0.087 Sum_probs=20.1
Q ss_pred cchhhHHHHHHHH-HHHHHHHHhhhhhhhhccc
Q psy14327 64 QNETLVDIIMNFI-AIFLWIAVGGIALHYWIGY 95 (140)
Q Consensus 64 ~kr~~iDi~~nli-Gc~LFIAvGal~l~~w~gy 95 (140)
++| .+.+-+++ |++|+.+.+.+..+.++.-
T Consensus 77 ~~R--~E~l~al~~~~~l~~~~~~i~~eai~~l 107 (306)
T 3j1z_P 77 HGK--AEPLAALAQSAFIMGSAFLLLFYGGERL 107 (306)
T ss_dssp CTT--HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhh--HHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 456 77777765 5666666666777777653
No 6
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=9.60 E-value=1.2e+02 Score=22.87 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=8.8
Q ss_pred hHHHHHHHHHH
Q psy14327 122 GALYLIDTVLS 132 (140)
Q Consensus 122 Ga~fLvDavlt 132 (140)
|++|++|++.=
T Consensus 60 ~~LYVvDSIvR 70 (157)
T 3clj_A 60 GSLYIIDSIGR 70 (157)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeeehHHHHH
Confidence 67899999863
No 7
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=9.42 E-value=1e+02 Score=21.65 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=9.1
Q ss_pred EEEEeccCCce
Q psy14327 8 ILYRTGYGGQF 18 (140)
Q Consensus 8 ilyr~gy~g~f 18 (140)
=.||.|+.|.|
T Consensus 62 n~YR~G~~G~~ 72 (86)
T 2dk3_A 62 NSYRMGAEGKF 72 (86)
T ss_dssp EEEEBSTTSCB
T ss_pred eeEEecCCCCE
Confidence 36999999877
No 8
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=9.35 E-value=97 Score=21.77 Aligned_cols=29 Identities=31% Similarity=0.561 Sum_probs=20.6
Q ss_pred chhhHHHHHH--------------HHHHHHHHHHhhhhhhhhcc
Q psy14327 65 NETLVDIIMN--------------FIAIFLWIAVGGIALHYWIG 94 (140)
Q Consensus 65 kr~~iDi~~n--------------liGc~LFIAvGal~l~~w~g 94 (140)
+|||.||+-| ++.-.|||.+| ++.|-+-.
T Consensus 6 ERpF~dIitsiRYWvIHsITIPslFiaGwLFVstG-LaYdvFGt 48 (83)
T 3arc_E 6 ERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTG-LAYDVFGT 48 (83)
T ss_dssp SCCHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHTC
T ss_pred cccHHHHhheeeeEEEEeeccchHHHhhhhhhccC-cceeccCC
Confidence 5688888754 46778888776 77777643
No 9
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=9.34 E-value=73 Score=23.95 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=6.4
Q ss_pred EEeccCCce
Q psy14327 10 YRTGYGGQF 18 (140)
Q Consensus 10 yr~gy~g~f 18 (140)
||-||+|.|
T Consensus 144 ~RLG~GgGy 152 (203)
T 3hy3_A 144 NRLGRGKGY 152 (203)
T ss_dssp CEECSSSCH
T ss_pred ceecCCCch
Confidence 677887764
No 10
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=8.90 E-value=2.2e+02 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcc
Q psy14327 70 DIIMNFIAIFLWIAVGGIALHYWIG 94 (140)
Q Consensus 70 Di~~nliGc~LFIAvGal~l~~w~g 94 (140)
-+++-+++|.+|+.+|+....++++
T Consensus 198 ~~l~~~~~~~~~l~~ga~~~~~~E~ 222 (309)
T 3um7_A 198 AMLFLLIGCLLFVLTPTFVFCYMED 222 (309)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567789999999999999887764
Done!