Query psy14327
Match_columns 140
No_of_seqs 38 out of 40
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 17:02:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14327.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14327hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fc6a3 b.36.1.3 (A:157-248) P 52.7 4.4 0.00032 25.5 2.6 21 15-35 1-21 (92)
2 d1k8wa3 b.122.1.1 (A:251-312) 27.5 14 0.0011 22.2 1.9 10 15-24 38-47 (62)
3 d1gpua3 c.48.1.1 (A:535-680) T 23.0 13 0.00092 25.7 1.0 30 25-54 13-42 (146)
4 d1r9ja3 c.48.1.1 (A:527-669) T 21.4 11 0.0008 26.1 0.4 21 25-45 11-31 (143)
5 d2dk3a1 b.34.19.1 (A:8-80) E3 18.6 20 0.0015 22.9 1.2 10 9-18 56-65 (73)
6 d1itza3 c.48.1.1 (A:540-675) T 17.8 19 0.0014 23.8 1.0 26 29-54 20-45 (136)
7 d1b3qa1 a.30.2.1 (A:293-354) H 16.3 27 0.002 20.8 1.4 11 69-79 11-21 (62)
8 d2axte1 f.23.38.1 (E:3-84) Cyt 15.7 38 0.0028 22.2 2.1 29 65-94 5-47 (82)
9 d2r8oa3 c.48.1.1 (A:528-663) T 14.3 28 0.0021 22.7 1.1 29 29-57 19-47 (136)
10 d1sbqa_ c.124.1.6 (A:) 5,10-me 14.0 20 0.0014 24.3 0.2 9 10-18 114-122 (164)
No 1
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}
Probab=52.71 E-value=4.4 Score=25.46 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.3
Q ss_pred CCceeeeeeeecCCCCCCCCe
Q psy14327 15 GGQFLGVGGTWNLNEEKNPDV 35 (140)
Q Consensus 15 ~g~flgvGgt~nlne~~~~d~ 35 (140)
+|+|.|+|.+.+.+++.+..+
T Consensus 1 sG~~~GiGi~i~~~~~~~~~v 21 (92)
T d1fc6a3 1 AGSVTGVGLEITYDGGSGKDV 21 (92)
T ss_dssp SSSCBBCSEEEEECTTCSSCE
T ss_pred CCceEEEEEEEEEcCCCCceE
Confidence 599999999999887776553
No 2
>d1k8wa3 b.122.1.1 (A:251-312) Pseudouridine synthase II TruB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.54 E-value=14 Score=22.18 Aligned_cols=10 Identities=40% Similarity=1.056 Sum_probs=7.7
Q ss_pred CCceeeeeee
Q psy14327 15 GGQFLGVGGT 24 (140)
Q Consensus 15 ~g~flgvGgt 24 (140)
.+.|+|+|=-
T Consensus 38 ~~~FlGiGei 47 (62)
T d1k8wa3 38 NGKFIGMGEI 47 (62)
T ss_dssp TTEEEEEEEE
T ss_pred CCeEEEEEEE
Confidence 5789999843
No 3
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.99 E-value=13 Score=25.74 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=22.4
Q ss_pred ecCCCCCCCCeeEEEeeeeeeeehhhHHHH
Q psy14327 25 WNLNEEKNPDVEIIASGVFVGYFVYTTVIL 54 (140)
Q Consensus 25 ~nlne~~~~d~eivasGtfvGylIi~~~~l 54 (140)
|=+.|.++||+-++|||.-|.-.+=..-.|
T Consensus 13 YiL~~~~~pdvtiiAsGsev~~AleAa~~L 42 (146)
T d1gpua3 13 YVLQDVANPDIILVATGSEVSLSVEAAKTL 42 (146)
T ss_dssp EEEECCSSCSEEEEECTHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 556788899999999998776655444444
No 4
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}
Probab=21.44 E-value=11 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.0
Q ss_pred ecCCCCCCCCeeEEEeeeeee
Q psy14327 25 WNLNEEKNPDVEIIASGVFVG 45 (140)
Q Consensus 25 ~nlne~~~~d~eivasGtfvG 45 (140)
|-+.|.++||+-|+|||.-|.
T Consensus 11 Yil~~~~~~dvtiiAtGseV~ 31 (143)
T d1r9ja3 11 YSVVDVPDLQLVIVASGSEVS 31 (143)
T ss_dssp EEEECCTTCSEEEEECGGGHH
T ss_pred EEEeeCCCCCEEEEEccHHHH
Confidence 556688899999999997554
No 5
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.62 E-value=20 Score=22.92 Aligned_cols=10 Identities=50% Similarity=0.949 Sum_probs=8.4
Q ss_pred EEEeccCCce
Q psy14327 9 LYRTGYGGQF 18 (140)
Q Consensus 9 lyr~gy~g~f 18 (140)
.||.||.|.+
T Consensus 56 ~YR~G~~G~~ 65 (73)
T d2dk3a1 56 SYRMGAEGKF 65 (73)
T ss_dssp EEEBSTTSCB
T ss_pred cccccCCCCE
Confidence 6999999865
No 6
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}
Probab=17.77 E-value=19 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.1
Q ss_pred CCCCCCeeEEEeeeeeeeehhhHHHH
Q psy14327 29 EEKNPDVEIIASGVFVGYFVYTTVIL 54 (140)
Q Consensus 29 e~~~~d~eivasGtfvGylIi~~~~l 54 (140)
++++||+-++|||+.|.-.+=..-.|
T Consensus 20 ~~~~~dv~liasGs~v~~al~Aa~~L 45 (136)
T d1itza3 20 TGNKPDLIVMGTGSELEIAAKAADEL 45 (136)
T ss_dssp STTCCSEEEEECGGGHHHHHHHHHHH
T ss_pred CCCCCCEEEEEecHHHHHHHHHHHHH
Confidence 46789999999998887766555555
No 7
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=16.34 E-value=27 Score=20.76 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH
Q psy14327 69 VDIIMNFIAIF 79 (140)
Q Consensus 69 iDi~~nliGc~ 79 (140)
+|-+||++|=.
T Consensus 11 LD~LmnlvGEL 21 (62)
T d1b3qa1 11 LDNLMDLMGEL 21 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 8
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.75 E-value=38 Score=22.15 Aligned_cols=29 Identities=31% Similarity=0.561 Sum_probs=21.1
Q ss_pred chhhHHHHHH--------------HHHHHHHHHHhhhhhhhhcc
Q psy14327 65 NETLVDIIMN--------------FIAIFLWIAVGGIALHYWIG 94 (140)
Q Consensus 65 kr~~iDi~~n--------------liGc~LFIAvGal~l~~w~g 94 (140)
+|||.||+-| ++.-.|||.+| ++.|-+-.
T Consensus 5 ERpF~dIitsiRYWvIHsiTIPslFiaGwlFVstG-LAYdvFGt 47 (82)
T d2axte1 5 ERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTG-LAYDVFGT 47 (82)
T ss_dssp SSCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHTTC
T ss_pred cccHHhhhheeeEEEEEeecccHHHHhhhhheecc-cchhhcCC
Confidence 5688888765 46778888776 67777643
No 9
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}
Probab=14.32 E-value=28 Score=22.74 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=21.3
Q ss_pred CCCCCCeeEEEeeeeeeeehhhHHHHHHH
Q psy14327 29 EEKNPDVEIIASGVFVGYFVYTTVILISY 57 (140)
Q Consensus 29 e~~~~d~eivasGtfvGylIi~~~~ligy 57 (140)
.+++||+-+++||+.+...+=..-.|-..
T Consensus 19 ~~~~~dv~iiasGs~v~~aleAa~~L~~~ 47 (136)
T d2r8oa3 19 CAGQPELIFIATGSEVELAVAAYEKLTAE 47 (136)
T ss_dssp CSSSCSEEEEECGGGHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeeccchHHHHHHHHHHHhc
Confidence 36788999999998888766555555433
No 10
>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=13.99 E-value=20 Score=24.34 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=5.7
Q ss_pred EEeccCCce
Q psy14327 10 YRTGYGGQF 18 (140)
Q Consensus 10 yr~gy~g~f 18 (140)
||-||+|.|
T Consensus 114 ~RLGyGgGy 122 (164)
T d1sbqa_ 114 YRLGFGKGY 122 (164)
T ss_dssp CEECCSSCH
T ss_pred CccccccCh
Confidence 577777554
Done!